diff --git a/docs/output.md b/docs/output.md index 704b9dd3..53b74719 100644 --- a/docs/output.md +++ b/docs/output.md @@ -750,8 +750,7 @@ For example, DIAMOND output does not have a dedicated section in the MultiQC HTM ### Downstream samplesheets -The pipeline can also generate input files for the following downstream -pipelines: +The pipeline can also generate input files for the following downstream pipelines: - [nf-core/mag](https://nf-co.re/mag) @@ -759,7 +758,7 @@ pipelines: Output files - `downstream_samplesheets/` - - `mag.csv`: input sheet for nf-core/mag with paths to nf-core/taxprofiler preprocessed (corresponding to what is saved with `--save_analysis_ready_fastqs`) + - `mag.csv`: input sheet for that contains paths to preprocessed FASTQs (corresponding to what is saved with `--save_analysis_ready_fastqs`) that can be used to skip read preprocessing steps in nf-core/mag