From 347d3415329ad9ab9a8ad11a107eac354d972395 Mon Sep 17 00:00:00 2001 From: Rob Syme Date: Fri, 7 Jul 2023 15:10:08 -0400 Subject: [PATCH] No need to check outdir for existence - Nextflow can create it on demand Signed-off-by: Rob Syme --- workflows/taxprofiler.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf index 99e7f8a8..9c7157b2 100644 --- a/workflows/taxprofiler.nf +++ b/workflows/taxprofiler.nf @@ -17,7 +17,7 @@ WorkflowTaxprofiler.initialise(params, log) // Check input path parameters to see if they exist def checkPathParamList = [ params.input, params.genome, params.databases, - params.outdir, params.longread_hostremoval_index, + params.longread_hostremoval_index, params.hostremoval_reference, params.shortread_hostremoval_index, params.multiqc_config, params.shortread_qc_adapterlist, params.krona_taxonomy_directory,