files input at calculate_tpm.py are causing error

[KeyTals]

Description of the bug

counts.clean.tsv which is coming combine.py and gtf.anno.tsv is not assistant

my input count matrix has 34848 rows which is consistent with gtf.txt but issue is when combine.py runs script to keep existing_symbols derived from gtf.anno.tsv the counts.clean.tsv is now 17130 rows so following line from calculate_tpm.py erring out

df_lengths = df_lengths.loc[df_counts.index]

Thank you,
Keyur

Command used and terminal output

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Relevant files

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System information

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