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Update test data for nf-test/summary_report #37

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alyssa-ab opened this issue Nov 16, 2022 · 2 comments

Open

1 of 2 tasks

Update test data for nf-test/summary_report #37

alyssa-ab opened this issue Nov 16, 2022 · 2 comments

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alyssa-ab commented Nov 16, 2022 •

edited by edmundmiller

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Description of feature

https://github.com/nf-core/viralintegration/blob/summaryreport/tests/modules/summary_report/main.nf.test
https://github.com/nf-core/test-datasets/tree/viralintegration/testdata/summary_report

Use inputs from updated runs with full reference

Nextflow full GRCh38
CTAT/Cromwell full GRCh38

alyssa-ab added the enhancement label

alyssa-ab self-assigned this

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chimeric_contig / summary_report #34

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alyssa-ab commented Nov 17, 2022

For CTAT/Cromwell run, use Docker container (v1.4.0) which was updated with the latest release 4 months ago

Singularity version run initially was v1.01

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alyssa-ab commented Nov 21, 2022

Nextflow inputs added: #38

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