diff --git a/.cache.tar.xz b/.cache.tar.xz index a9aa75fb4b..67f8e6648c 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index d27f622ecf..732cbbb28c 100644 --- a/public/components.json +++ b/public/components.json @@ -5984,6 +5984,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -19145,6 +19149,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -70606,6 +70618,10 @@ "name": "isoseq", "version": "1.1.5" }, + { + "name": "isoseq", + "version": "1.1.5" + }, { "name": "isoseq", "version": "1.1.5" @@ -82101,6 +82117,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" diff --git a/public/pipelines.json b/public/pipelines.json index 3b79d4aee2..074ec26f72 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -531,7 +531,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 111, + "forks_count": 112, "archived": false, "disabled": false, "open_issues_count": 22, @@ -556,7 +556,7 @@ "taxonomic-profiling" ], "visibility": "public", - "forks": 111, + "forks": 112, "open_issues": 22, "watchers": 177, "default_branch": "master", @@ -590,7 +590,7 @@ "status": "disabled" } }, - "network_count": 111, + "network_count": 112, "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -9387,7 +9387,7 @@ } }, "network_count": 4, - "subscribers_count": 166, + "subscribers_count": 165, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -11829,9 +11829,9 @@ "url": "https://api.github.com/repos/nf-core/fastquorum", "created_at": "2022-09-10T06:39:22Z", "updated_at": "2024-09-03T19:19:37Z", - "pushed_at": "2024-08-23T19:42:54Z", + "pushed_at": "2024-09-04T20:31:39Z", "homepage": "https://nf-co.re/fastquorum", - "size": 5008, + "size": 5011, "stargazers_count": 18, "watchers_count": 18, "language": "Nextflow", @@ -11890,7 +11890,7 @@ } }, "network_count": 9, - "subscribers_count": 152, + "subscribers_count": 151, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -12020,8 +12020,8 @@ }, { "tag_name": "dev", - "published_at": "2024-08-02T05:15:51Z", - "tag_sha": "2fdb822a6292cadacc58bfbf275bf4e1c8d8b1b1", + "published_at": "2024-09-04T20:31:34Z", + "tag_sha": "02a34f31295a921b1b9e7758e9f6e495f25fb2f8", "has_schema": true, "doc_files": [ "docs/output.md", @@ -20446,7 +20446,7 @@ "forks_count": 136, "archived": false, "disabled": false, - "open_issues_count": 50, + "open_issues_count": 51, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -20462,7 +20462,7 @@ ], "visibility": "public", "forks": 136, - "open_issues": 50, + "open_issues": 51, "watchers": 137, "default_branch": "master", "temp_clone_token": "", @@ -30737,7 +30737,7 @@ "forks_count": 687, "archived": false, "disabled": false, - "open_issues_count": 62, + "open_issues_count": 63, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -30747,7 +30747,7 @@ ], "visibility": "public", "forks": 687, - "open_issues": 62, + "open_issues": 63, "watchers": 854, "default_branch": "master", "temp_clone_token": "", @@ -33594,7 +33594,7 @@ "forks_count": 401, "archived": false, "disabled": false, - "open_issues_count": 264, + "open_issues_count": 265, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -33613,7 +33613,7 @@ ], "visibility": "public", "forks": 401, - "open_issues": 264, + "open_issues": 265, "watchers": 380, "default_branch": "master", "temp_clone_token": "", @@ -33708,7 +33708,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 29, + "open_pr_count": 30, "repository_url": "https://github.com/nf-core/sarek", "contributors": [ { @@ -37793,7 +37793,7 @@ } }, "network_count": 14, - "subscribers_count": 177, + "subscribers_count": 176, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -38790,9 +38790,9 @@ "url": "https://api.github.com/repos/nf-core/smrnaseq", "created_at": "2018-07-11T14:56:59Z", "updated_at": "2024-09-03T10:10:37Z", - "pushed_at": "2024-09-04T14:48:36Z", + "pushed_at": "2024-09-04T20:20:20Z", "homepage": "https://nf-co.re/smrnaseq", - "size": 8402, + "size": 8444, "stargazers_count": 72, "watchers_count": 72, "language": "Nextflow", @@ -38805,7 +38805,7 @@ "forks_count": 121, "archived": false, "disabled": false, - "open_issues_count": 31, + "open_issues_count": 28, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -38815,7 +38815,7 @@ ], "visibility": "public", "forks": 121, - "open_issues": 31, + "open_issues": 28, "watchers": 72, "default_branch": "master", "temp_clone_token": "", @@ -38903,7 +38903,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/smrnaseq", "contributors": [ { @@ -39354,8 +39354,8 @@ }, { "tag_name": "dev", - "published_at": "2024-09-04T14:48:33Z", - "tag_sha": "8a64f1968baa1b37c36c5b5d4e01e1f4a7781f30", + "published_at": "2024-09-04T20:20:20Z", + "tag_sha": "874ef646adb9f93ebf000788e1f48225a0efff2f", "has_schema": true, "doc_files": [ "docs/output.md", @@ -39363,16 +39363,19 @@ ], "components": { "modules": [ + "blat", "cat_cat", "cat_fastq", "fastp", "fastqc", + "gawk", "multiqc", "samtools_flagstat", "samtools_idxstats", "samtools_index", "samtools_sort", "samtools_stats", + "seqkit_grep", "umicollapse", "umitools_extract", "untarfiles"