diff --git a/.cache.tar.xz b/.cache.tar.xz index 1ce3feb508..4e5059e1be 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index d6b893e625..36cc94df5f 100644 --- a/public/components.json +++ b/public/components.json @@ -7834,6 +7834,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -21511,7 +21515,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -21668,7 +21672,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -21779,7 +21783,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -21872,7 +21876,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -22050,7 +22054,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -22164,7 +22168,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -22282,7 +22286,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -25764,6 +25768,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -27620,7 +27632,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -27712,7 +27724,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -28547,7 +28559,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nascent", @@ -53307,7 +53319,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nanoseq", @@ -82334,7 +82346,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "mhcquant", @@ -108128,6 +108140,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" @@ -111251,7 +111267,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -111369,7 +111385,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -117474,7 +117490,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "mhcquant", @@ -126837,7 +126853,8 @@ "@sateeshperi" ], "maintainers": [ - "@sateeshperi" + "@sateeshperi", + "@gallvp" ] } }, @@ -131928,7 +131945,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "pathogensurveillance", @@ -137734,7 +137751,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nascent", @@ -142397,7 +142414,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "raredisease", @@ -142522,7 +142539,7 @@ "pipelines": [ { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" } ] }, @@ -150982,7 +150999,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nanoseq", @@ -151564,7 +151581,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nanoseq", @@ -152188,7 +152205,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nanoseq", @@ -153257,7 +153274,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nanoseq", @@ -153476,7 +153493,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "nanoseq", @@ -177932,7 +177949,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "riboseq", @@ -181739,7 +181756,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "multiplesequencealign", @@ -199753,7 +199770,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "mhcquant", @@ -200030,7 +200047,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "mhcquant", @@ -200231,7 +200248,7 @@ }, { "name": "methylseq", - "version": "2.7.0" + "version": "2.7.1" }, { "name": "phaseimpute", diff --git a/public/pipelines.json b/public/pipelines.json index e2c7f26730..98b1244aa8 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -3613,12 +3613,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/chipseq", "created_at": "2018-04-24T15:42:59Z", - "updated_at": "2024-10-25T15:11:36Z", + "updated_at": "2024-10-27T11:46:58Z", "pushed_at": "2024-10-14T14:37:54Z", "homepage": "https://nf-co.re/chipseq", "size": 16603, - "stargazers_count": 192, - "watchers_count": 192, + "stargazers_count": 193, + "watchers_count": 193, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -3643,7 +3643,7 @@ "visibility": "public", "forks": 148, "open_issues": 15, - "watchers": 192, + "watchers": 193, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -8172,7 +8172,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 7, + "forks_count": 8, "archived": false, "disabled": false, "open_issues_count": 2, @@ -8186,7 +8186,7 @@ "tutorial" ], "visibility": "public", - "forks": 7, + "forks": 8, "open_issues": 2, "watchers": 3, "default_branch": "master", @@ -8220,7 +8220,7 @@ "status": "disabled" } }, - "network_count": 7, + "network_count": 8, "subscribers_count": 182, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -10169,9 +10169,9 @@ "url": "https://api.github.com/repos/nf-core/differentialabundance", "created_at": "2022-10-12T08:49:25Z", "updated_at": "2024-10-25T15:12:21Z", - "pushed_at": "2024-10-26T00:18:00Z", + "pushed_at": "2024-10-27T11:08:51Z", "homepage": "https://nf-co.re/differentialabundance", - "size": 8993, + "size": 8995, "stargazers_count": 61, "watchers_count": 61, "language": "Nextflow", @@ -10181,7 +10181,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 33, + "forks_count": 34, "archived": false, "disabled": false, "open_issues_count": 59, @@ -10201,7 +10201,7 @@ "shiny" ], "visibility": "public", - "forks": 33, + "forks": 34, "open_issues": 59, "watchers": 61, "default_branch": "master", @@ -10235,7 +10235,7 @@ "status": "disabled" } }, - "network_count": 33, + "network_count": 34, "subscribers_count": 142, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -12372,7 +12372,7 @@ } }, "network_count": 1, - "subscribers_count": 233, + "subscribers_count": 226, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -18095,9 +18095,9 @@ "url": "https://api.github.com/repos/nf-core/mag", "created_at": "2018-05-22T06:06:58Z", "updated_at": "2024-10-22T08:42:20Z", - "pushed_at": "2024-10-26T13:23:31Z", + "pushed_at": "2024-10-27T05:33:15Z", "homepage": "https://nf-co.re/mag", - "size": 23153, + "size": 23165, "stargazers_count": 213, "watchers_count": 213, "language": "Nextflow", @@ -18107,7 +18107,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 109, + "forks_count": 110, "archived": false, "disabled": false, "open_issues_count": 65, @@ -18125,7 +18125,7 @@ "nanopore-sequencing" ], "visibility": "public", - "forks": 109, + "forks": 110, "open_issues": 65, "watchers": 213, "default_branch": "master", @@ -18159,7 +18159,7 @@ "status": "disabled" } }, - "network_count": 109, + "network_count": 110, "subscribers_count": 154, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -19477,8 +19477,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-26T13:23:30Z", - "tag_sha": "2963ba0050da439ebb667769116f98ffa22b9a45", + "published_at": "2024-10-27T05:33:14Z", + "tag_sha": "4ec184db8b0620ccdb0e0853d74132da1976d0f1", "has_schema": true, "doc_files": [ "docs/output.md", @@ -20132,13 +20132,18 @@ "url": "https://api.github.com/repos/nf-core/mcmicro/branches/master/protection/required_status_checks", "strict": false, "contexts": [ - "nf-core" + "nf-core", + "pre-commit" ], "contexts_url": "https://api.github.com/repos/nf-core/mcmicro/branches/master/protection/required_status_checks/contexts", "checks": [ { "context": "nf-core", "app_id": 15368 + }, + { + "context": "pre-commit", + "app_id": 15368 } ] }, @@ -20153,7 +20158,6 @@ "strict": false, "contexts": [ "nf-core", - "Run pipeline with test data (23.04.0)", "pre-commit" ], "contexts_url": "https://api.github.com/repos/nf-core/mcmicro/branches/dev/protection/required_status_checks/contexts", @@ -20162,10 +20166,6 @@ "context": "nf-core", "app_id": 15368 }, - { - "context": "Run pipeline with test data (23.04.0)", - "app_id": 15368 - }, { "context": "pre-commit", "app_id": 15368 @@ -21437,10 +21437,10 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/methylseq", "created_at": "2018-03-12T15:46:42Z", - "updated_at": "2024-10-25T15:13:47Z", - "pushed_at": "2024-10-26T07:39:13Z", + "updated_at": "2024-10-27T07:44:12Z", + "pushed_at": "2024-10-27T10:47:20Z", "homepage": "https://nf-co.re/methylseq", - "size": 22509, + "size": 22470, "stargazers_count": 140, "watchers_count": 140, "language": "Nextflow", @@ -21453,7 +21453,7 @@ "forks_count": 144, "archived": false, "disabled": false, - "open_issues_count": 35, + "open_issues_count": 31, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -21469,7 +21469,7 @@ ], "visibility": "public", "forks": 144, - "open_issues": 35, + "open_issues": 31, "watchers": 140, "default_branch": "master", "temp_clone_token": "", @@ -21550,7 +21550,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 4, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/methylseq", "contributors": [ { @@ -21560,7 +21560,7 @@ }, { "name": "sateeshperi", - "count": 201, + "count": 218, "avatar_url": "https://avatars.githubusercontent.com/u/33637490?v=4" }, { @@ -21705,9 +21705,9 @@ } ], "released_after_tools": true, - "head_sha": "aac172df2c1c6558683885d3d52157bed3b6bbab", + "head_sha": "d16f8f81e812d86f4d297e69de3f001628dfd5b4", "last_release_is_head": true, - 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"published_at": "2024-10-26T07:39:13Z", - "tag_sha": "345f43b8c1d9281335ab9e6ca240884f9d21bbab", + "published_at": "2024-10-27T10:33:10Z", + "tag_sha": "d1eb8b1dedad96818645046aa8ff76d7ab3c99c2", "has_schema": true, "doc_files": [ "docs/output.md", @@ -32011,12 +32056,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", - "updated_at": "2024-10-26T23:04:37Z", + "updated_at": "2024-10-27T13:03:25Z", "pushed_at": "2024-10-24T11:32:08Z", "homepage": "https://nf-co.re/rnaseq", "size": 72419, - "stargazers_count": 892, - "watchers_count": 892, + "stargazers_count": 893, + "watchers_count": 893, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -32038,7 +32083,7 @@ "visibility": "public", "forks": 704, "open_issues": 66, - "watchers": 892, + "watchers": 893, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -37844,7 +37889,7 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/scdownstream", "created_at": "2024-06-11T06:38:31Z", - "updated_at": "2024-10-23T17:06:58Z", + "updated_at": "2024-10-27T13:26:07Z", "pushed_at": "2024-10-18T06:02:39Z", "homepage": "https://nf-co.re/scdownstream", "size": 1910, @@ -37860,7 +37905,7 @@ "forks_count": 9, "archived": false, "disabled": false, - "open_issues_count": 19, + "open_issues_count": 33, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -37874,7 +37919,7 @@ ], "visibility": "public", "forks": 9, - "open_issues": 19, + "open_issues": 33, "watchers": 36, "default_branch": "dev", "temp_clone_token": "",