diff --git a/.cache.tar.xz b/.cache.tar.xz index 7980ec443f..e101a46c79 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 0d37ca3bba..38ba0865f7 100644 --- a/public/components.json +++ b/public/components.json @@ -7826,6 +7826,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -25740,6 +25744,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -108096,6 +108108,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" @@ -200225,6 +200241,10 @@ "name": "spatialvi", "version": "dev" }, + { + "name": "tbanalyzer", + "version": "dev" + }, { "name": "variantbenchmarking", "version": "dev" @@ -200464,10 +200484,6 @@ "name": "taxprofiler", "version": "1.2.0" }, - { - "name": "tbanalyzer", - "version": "dev" - }, { "name": "tfactivity", "version": "dev" diff --git a/public/pipelines.json b/public/pipelines.json index 303eecc026..f50c92a82f 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -8369,9 +8369,9 @@ "url": "https://api.github.com/repos/nf-core/demultiplex", "created_at": "2020-03-05T15:48:10Z", "updated_at": "2024-10-07T14:39:02Z", - "pushed_at": "2024-10-24T15:11:51Z", + "pushed_at": "2024-10-26T04:24:41Z", "homepage": "https://nf-co.re/demultiplex", - "size": 14026, + "size": 14027, "stargazers_count": 43, "watchers_count": 43, "language": "Nextflow", @@ -8384,7 +8384,7 @@ "forks_count": 36, "archived": false, "disabled": false, - "open_issues_count": 20, + "open_issues_count": 19, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -8397,7 +8397,7 @@ ], "visibility": "public", "forks": 36, - "open_issues": 20, + "open_issues": 19, "watchers": 43, "default_branch": "master", "temp_clone_token": "", @@ -8478,7 +8478,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 0, "repository_url": "https://github.com/nf-core/demultiplex", "contributors": [ { @@ -8935,8 +8935,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-22T21:16:28Z", - "tag_sha": "4d2875943a2f147acd0f43d868493dedc5975485", + "published_at": "2024-10-26T04:24:41Z", + "tag_sha": "9e11c07aaa298d0dd18771d4ca20e7dc8e952b4d", "has_schema": true, "doc_files": [ "docs/output.md", @@ -12372,18 +12372,17 @@ } }, "network_count": 1, - "subscribers_count": 240, + "subscribers_count": 238, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, "team_core_permission_admin": true, "master_branch_exists": true, - "master_branch_protection_up_to_date": -1, "master_branch_protection_status_checks": -1, - "master_branch_protection_required_reviews": -1, - "master_branch_protection_require_codeowner_review": -1, - "master_branch_protection_require_non_stale_review": -1, - "master_branch_protection_enforce_admins": -1, + "master_branch_protection_required_reviews": 1, + "master_branch_protection_require_codeowner_review": false, + "master_branch_protection_require_non_stale_review": false, + "master_branch_protection_enforce_admins": false, "master_restrict_push": -1, "dev_branch_exists": true, "dev_branch_protection_up_to_date": -1, @@ -18096,9 +18095,9 @@ "url": "https://api.github.com/repos/nf-core/mag", "created_at": "2018-05-22T06:06:58Z", "updated_at": "2024-10-22T08:42:20Z", - "pushed_at": "2024-10-25T14:16:00Z", + "pushed_at": "2024-10-26T13:23:31Z", "homepage": "https://nf-co.re/mag", - "size": 23136, + "size": 23139, "stargazers_count": 213, "watchers_count": 213, "language": "Nextflow", @@ -19478,8 +19477,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-25T14:15:56Z", - "tag_sha": "78d95030d5adf0ab6a7d46a3a2782b3a1cc03af4", + "published_at": "2024-10-26T13:23:30Z", + "tag_sha": "2963ba0050da439ebb667769116f98ffa22b9a45", "has_schema": true, "doc_files": [ "docs/output.md", @@ -21439,9 +21438,9 @@ "url": "https://api.github.com/repos/nf-core/methylseq", "created_at": "2018-03-12T15:46:42Z", "updated_at": "2024-10-25T15:13:47Z", - "pushed_at": "2024-10-25T06:52:49Z", + "pushed_at": "2024-10-26T07:39:13Z", "homepage": "https://nf-co.re/methylseq", - "size": 22450, + "size": 22509, "stargazers_count": 140, "watchers_count": 140, "language": "Nextflow", @@ -22118,8 +22117,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-25T06:52:49Z", - "tag_sha": "f84ee8e257cb968834fd3241c216c4e684c79623", + "published_at": "2024-10-26T07:39:13Z", + "tag_sha": "345f43b8c1d9281335ab9e6ca240884f9d21bbab", "has_schema": true, "doc_files": [ "docs/output.md", @@ -22935,7 +22934,7 @@ "forks_count": 7, "archived": false, "disabled": false, - "open_issues_count": 13, + "open_issues_count": 14, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -22951,7 +22950,7 @@ ], "visibility": "public", "forks": 7, - "open_issues": 13, + "open_issues": 14, "watchers": 10, "default_branch": "master", "temp_clone_token": "", @@ -23412,12 +23411,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/nanoseq", "created_at": "2019-09-09T11:23:29Z", - "updated_at": "2024-10-20T21:31:45Z", + "updated_at": "2024-10-26T06:48:27Z", "pushed_at": "2024-10-11T12:34:01Z", "homepage": "https://nf-co.re/nanoseq", "size": 7106, - "stargazers_count": 178, - "watchers_count": 178, + "stargazers_count": 179, + "watchers_count": 179, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -23441,7 +23440,7 @@ "visibility": "public", "forks": 79, "open_issues": 37, - "watchers": 178, + "watchers": 179, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -27554,7 +27553,7 @@ "forks_count": 36, "archived": false, "disabled": false, - "open_issues_count": 21, + "open_issues_count": 22, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -27567,7 +27566,7 @@ ], "visibility": "public", "forks": 36, - "open_issues": 21, + "open_issues": 22, "watchers": 54, "default_branch": "master", "temp_clone_token": "", @@ -32012,12 +32011,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", - "updated_at": "2024-10-25T10:33:39Z", + "updated_at": "2024-10-26T09:33:00Z", "pushed_at": "2024-10-24T11:32:08Z", "homepage": "https://nf-co.re/rnaseq", "size": 72419, - "stargazers_count": 890, - "watchers_count": 890, + "stargazers_count": 891, + "watchers_count": 891, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -32039,7 +32038,7 @@ "visibility": "public", "forks": 703, "open_issues": 66, - "watchers": 890, + "watchers": 891, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -38708,12 +38707,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/scrnaseq", "created_at": "2019-04-08T13:12:00Z", - "updated_at": "2024-10-01T06:38:16Z", + "updated_at": "2024-10-26T09:28:07Z", "pushed_at": "2024-10-18T07:22:53Z", "homepage": "https://nf-co.re/scrnaseq", "size": 44114, - "stargazers_count": 210, - "watchers_count": 210, + "stargazers_count": 211, + "watchers_count": 211, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -38742,7 +38741,7 @@ "visibility": "public", "forks": 168, "open_issues": 56, - "watchers": 210, + "watchers": 211, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -41211,10 +41210,10 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/spatialvi", "created_at": "2022-02-23T20:44:38Z", - "updated_at": "2024-10-25T13:38:17Z", - "pushed_at": "2024-10-25T21:12:29Z", + "updated_at": "2024-10-26T11:05:35Z", + "pushed_at": "2024-10-26T11:05:33Z", "homepage": "https://nf-co.re/spatialvi", - "size": 7254, + "size": 7257, "stargazers_count": 50, "watchers_count": 50, "language": "Nextflow", @@ -41227,7 +41226,7 @@ "forks_count": 18, "archived": false, "disabled": false, - "open_issues_count": 5, + "open_issues_count": 3, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -41246,7 +41245,7 @@ ], "visibility": "public", "forks": 18, - "open_issues": 5, + "open_issues": 3, "watchers": 50, "default_branch": "dev", "temp_clone_token": "", @@ -41349,12 +41348,12 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 0, "repository_url": "https://github.com/nf-core/spatialvi", "contributors": [ { "name": "fasterius", - "count": 444, + "count": 448, "avatar_url": "https://avatars.githubusercontent.com/u/12528765?v=4" }, { @@ -41364,7 +41363,7 @@ }, { "name": "cavenel", - "count": 50, + "count": 58, "avatar_url": "https://avatars.githubusercontent.com/u/6164758?v=4" }, { @@ -41379,9 +41378,9 @@ } ], "released_after_tools": false, - "head_sha": "aa3472a7990ad3fd497bc01371f76e2e67cf4ea2", + "head_sha": "0b1c35afb1deaf753868d04b6c0c9362e475e4a7", "last_release_is_head": false, - "last_release_vs_default_compare_url": "https://github.com/nf-core/spatialvi/compare/aa3472a7990ad3fd497bc01371f76e2e67cf4ea2...undefined", + "last_release_vs_default_compare_url": "https://github.com/nf-core/spatialvi/compare/0b1c35afb1deaf753868d04b6c0c9362e475e4a7...undefined", "commits_to_dev": 30, "is_DSL2": true, "has_nf_test": true, @@ -41393,8 +41392,8 @@ "releases": [ { "tag_name": "dev", - "published_at": "2024-10-25T13:38:11Z", - "tag_sha": "aa3472a7990ad3fd497bc01371f76e2e67cf4ea2", + "published_at": "2024-10-26T11:05:30Z", + "tag_sha": "0b1c35afb1deaf753868d04b6c0c9362e475e4a7", "has_schema": true, "doc_files": [ "docs/output.md", @@ -43097,8 +43096,8 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/tbanalyzer", "created_at": "2024-05-06T15:00:51Z", - "updated_at": "2024-10-16T15:43:29Z", - "pushed_at": "2024-10-11T12:35:14Z", + "updated_at": "2024-10-26T13:46:58Z", + "pushed_at": "2024-10-26T13:52:32Z", "homepage": "https://nf-co.re/tbanalyzer", "size": 361, "stargazers_count": 6, @@ -43113,7 +43112,7 @@ "forks_count": 1, "archived": false, "disabled": false, - "open_issues_count": 2, + "open_issues_count": 1, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -43123,7 +43122,7 @@ ], "visibility": "public", "forks": 1, - "open_issues": 2, + "open_issues": 1, "watchers": 6, "default_branch": "dev", "temp_clone_token": "", @@ -43185,12 +43184,12 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 0, "repository_url": "https://github.com/nf-core/tbanalyzer", "contributors": [ { "name": "abhi18av", - "count": 1, + "count": 3, "avatar_url": "https://avatars.githubusercontent.com/u/12799326?v=4" }, { @@ -43200,10 +43199,10 @@ } ], "released_after_tools": false, - "head_sha": "0d59290e5b1eabe26484d93ea1dad97b38bd6038", + "head_sha": "37ac93a0eeb3e806bc858fe4d56ad487c5894b14", "last_release_is_head": false, - "last_release_vs_default_compare_url": "https://github.com/nf-core/tbanalyzer/compare/0d59290e5b1eabe26484d93ea1dad97b38bd6038...undefined", - "commits_to_dev": 4, + "last_release_vs_default_compare_url": "https://github.com/nf-core/tbanalyzer/compare/37ac93a0eeb3e806bc858fe4d56ad487c5894b14...undefined", + "commits_to_dev": 9, "is_DSL2": true, "has_nf_test": false, "has_nf_test_dev": false, @@ -43211,13 +43210,13 @@ "nf-validation@1.1.3" ], "dev_nextflow_config_plugins": [ - "nf-validation@1.1.3" + "nf-schema@2.1.1" ], "releases": [ { "tag_name": "dev", - "published_at": "2024-05-22T09:06:38Z", - "tag_sha": "0d59290e5b1eabe26484d93ea1dad97b38bd6038", + "published_at": "2024-10-26T13:46:53Z", + "tag_sha": "37ac93a0eeb3e806bc858fe4d56ad487c5894b14", "has_schema": true, "doc_files": [ "docs/output.md", @@ -43231,7 +43230,7 @@ "subworkflows": [ "utils_nextflow_pipeline", "utils_nfcore_pipeline", - "utils_nfvalidation_plugin" + "utils_nfschema_plugin" ] } }