diff --git a/.cache.tar.xz b/.cache.tar.xz index 7e13505f94..3cc1fe8f2c 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index ded948f360..279b85ecbc 100644 --- a/public/components.json +++ b/public/components.json @@ -7652,6 +7652,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -25043,6 +25047,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -106756,6 +106768,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" diff --git a/public/pipelines.json b/public/pipelines.json index 0c2c3f8c99..56cb67e769 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -10,12 +10,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/airrflow", "created_at": "2018-12-04T11:39:05Z", - "updated_at": "2024-09-12T10:38:12Z", - "pushed_at": "2024-09-30T07:33:57Z", + "updated_at": "2024-10-08T13:33:19Z", + "pushed_at": "2024-10-08T12:29:11Z", "homepage": "https://nf-co.re/airrflow", - "size": 8589, - "stargazers_count": 52, - "watchers_count": 52, + "size": 8611, + "stargazers_count": 53, + "watchers_count": 53, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -26,7 +26,7 @@ "forks_count": 34, "archived": false, "disabled": false, - "open_issues_count": 21, + "open_issues_count": 22, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -39,8 +39,8 @@ ], "visibility": "public", "forks": 34, - "open_issues": 21, - "watchers": 52, + "open_issues": 22, + "watchers": 53, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -73,7 +73,7 @@ } }, "network_count": 34, - "subscribers_count": 143, + "subscribers_count": 144, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -147,7 +147,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 4, + "open_pr_count": 5, "repository_url": "https://github.com/nf-core/airrflow", "contributors": [ { @@ -221,7 +221,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "0c0bcde09516df6dd5532e7eb88906673d00370b", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/airrflow/compare/0c0bcde09516df6dd5532e7eb88906673d00370b...0c0bcde09516df6dd5532e7eb88906673d00370b", @@ -519,9 +519,9 @@ "url": "https://api.github.com/repos/nf-core/ampliseq", "created_at": "2018-09-26T15:24:54Z", "updated_at": "2024-10-06T21:59:35Z", - "pushed_at": "2024-08-06T07:52:31Z", + "pushed_at": "2024-10-08T12:29:07Z", "homepage": "https://nf-co.re/ampliseq", - "size": 16612, + "size": 16483, "stargazers_count": 182, "watchers_count": 182, "language": "Nextflow", @@ -534,7 +534,7 @@ "forks_count": 115, "archived": false, "disabled": false, - "open_issues_count": 26, + "open_issues_count": 27, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -557,7 +557,7 @@ ], "visibility": "public", "forks": 115, - "open_issues": 26, + "open_issues": 27, "watchers": 182, "default_branch": "master", "temp_clone_token": "", @@ -591,7 +591,7 @@ } }, "network_count": 115, - "subscribers_count": 144, + "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -720,7 +720,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/ampliseq", "contributors": [ { @@ -849,7 +849,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "0473e157ac9a7b1d36845ff9f8fa7ac843d3b234", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/ampliseq/compare/0473e157ac9a7b1d36845ff9f8fa7ac843d3b234...0473e157ac9a7b1d36845ff9f8fa7ac843d3b234", @@ -1441,9 +1441,9 @@ "url": "https://api.github.com/repos/nf-core/atacseq", "created_at": "2018-11-05T17:49:32Z", "updated_at": "2024-10-07T05:50:54Z", - "pushed_at": "2024-09-26T09:14:21Z", + "pushed_at": "2024-10-08T12:29:00Z", "homepage": "https://nf-co.re/atacseq", - "size": 10054, + "size": 10075, "stargazers_count": 183, "watchers_count": 183, "language": "Nextflow", @@ -1456,7 +1456,7 @@ "forks_count": 116, "archived": false, "disabled": false, - "open_issues_count": 31, + "open_issues_count": 32, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -1466,7 +1466,7 @@ ], "visibility": "public", "forks": 116, - "open_issues": 31, + "open_issues": 32, "watchers": 183, "default_branch": "master", "temp_clone_token": "", @@ -1500,7 +1500,7 @@ } }, "network_count": 116, - "subscribers_count": 143, + "subscribers_count": 144, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -1579,7 +1579,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 4, + "open_pr_count": 5, "repository_url": "https://github.com/nf-core/atacseq", "contributors": [ { @@ -2023,9 +2023,9 @@ "url": "https://api.github.com/repos/nf-core/bacass", "created_at": "2019-01-31T08:03:31Z", "updated_at": "2024-09-05T12:48:42Z", - "pushed_at": "2024-09-28T14:18:31Z", + "pushed_at": "2024-10-08T12:29:00Z", "homepage": "https://nf-co.re/bacass", - "size": 5143, + "size": 5145, "stargazers_count": 60, "watchers_count": 60, "language": "Nextflow", @@ -2038,7 +2038,7 @@ "forks_count": 41, "archived": false, "disabled": false, - "open_issues_count": 18, + "open_issues_count": 19, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -2054,7 +2054,7 @@ ], "visibility": "public", "forks": 41, - "open_issues": 18, + "open_issues": 19, "watchers": 60, "default_branch": "master", "temp_clone_token": "", @@ -2088,7 +2088,7 @@ } }, "network_count": 41, - "subscribers_count": 143, + "subscribers_count": 144, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -2142,7 +2142,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/bacass", "contributors": [ { @@ -2211,7 +2211,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "c81202b7702c67d0e829085685083847b9e59435", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/bacass/compare/c81202b7702c67d0e829085685083847b9e59435...c81202b7702c67d0e829085685083847b9e59435", @@ -2544,7 +2544,7 @@ } }, "network_count": 30, - "subscribers_count": 136, + "subscribers_count": 137, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -2736,9 +2736,9 @@ "url": "https://api.github.com/repos/nf-core/bamtofastq", "created_at": "2020-08-03T15:02:23Z", "updated_at": "2024-09-03T11:25:17Z", - "pushed_at": "2024-06-02T07:09:48Z", + "pushed_at": "2024-10-08T12:29:45Z", "homepage": "https://nf-co.re/bamtofastq", - "size": 162026, + "size": 162048, "stargazers_count": 21, "watchers_count": 21, "language": "Nextflow", @@ -2751,7 +2751,7 @@ "forks_count": 13, "archived": false, "disabled": false, - "open_issues_count": 7, + "open_issues_count": 8, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -2762,7 +2762,7 @@ ], "visibility": "public", "forks": 13, - "open_issues": 7, + "open_issues": 8, "watchers": 21, "default_branch": "master", "temp_clone_token": "", @@ -2875,7 +2875,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/bamtofastq", "contributors": [ { @@ -3151,7 +3151,7 @@ } }, "network_count": 12, - "subscribers_count": 139, + "subscribers_count": 140, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -3366,9 +3366,9 @@ "url": "https://api.github.com/repos/nf-core/callingcards", "created_at": "2022-10-27T17:57:27Z", "updated_at": "2024-09-03T14:02:31Z", - "pushed_at": "2024-06-19T14:31:17Z", + "pushed_at": "2024-10-08T12:29:36Z", "homepage": "https://nf-co.re/callingcards", - "size": 40297, + "size": 40316, "stargazers_count": 4, "watchers_count": 4, "language": "Nextflow", @@ -3381,14 +3381,14 @@ "forks_count": 3, "archived": false, "disabled": false, - "open_issues_count": 5, + "open_issues_count": 6, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 3, - "open_issues": 5, + "open_issues": 6, "watchers": 4, "default_branch": "master", "temp_clone_token": "", @@ -3481,7 +3481,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/callingcards", "contributors": [ { @@ -3495,7 +3495,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/12273093?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "20b66e785a822028eaa125583aad0747d55bba61", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/callingcards/compare/20b66e785a822028eaa125583aad0747d55bba61...20b66e785a822028eaa125583aad0747d55bba61", @@ -3631,9 +3631,9 @@ "url": "https://api.github.com/repos/nf-core/chipseq", "created_at": "2018-04-24T15:42:59Z", "updated_at": "2024-10-07T15:14:09Z", - "pushed_at": "2024-10-07T15:14:21Z", + "pushed_at": "2024-10-08T12:30:09Z", "homepage": "https://nf-co.re/chipseq", - "size": 16529, + "size": 16549, "stargazers_count": 188, "watchers_count": 188, "language": "Nextflow", @@ -3646,7 +3646,7 @@ "forks_count": 145, "archived": false, "disabled": false, - "open_issues_count": 12, + "open_issues_count": 13, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -3659,7 +3659,7 @@ ], "visibility": "public", "forks": 145, - "open_issues": 12, + "open_issues": 13, "watchers": 188, "default_branch": "master", "temp_clone_token": "", @@ -3693,7 +3693,7 @@ } }, "network_count": 145, - "subscribers_count": 141, + "subscribers_count": 142, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -3757,7 +3757,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/chipseq", "contributors": [ { @@ -3861,7 +3861,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "76e2382b6d443db4dc2396e6831d1243256d80b0", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/chipseq/compare/76e2382b6d443db4dc2396e6831d1243256d80b0...76e2382b6d443db4dc2396e6831d1243256d80b0", @@ -4105,9 +4105,9 @@ "url": "https://api.github.com/repos/nf-core/circdna", "created_at": "2021-11-02T09:45:33Z", "updated_at": "2024-09-03T10:14:57Z", - "pushed_at": "2024-05-09T11:38:52Z", + "pushed_at": "2024-10-08T12:29:58Z", "homepage": "https://nf-co.re/circdna", - "size": 192929, + "size": 192968, "stargazers_count": 28, "watchers_count": 28, "language": "Python", @@ -4171,7 +4171,7 @@ } }, "network_count": 14, - "subscribers_count": 150, + "subscribers_count": 151, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -4621,7 +4621,7 @@ } }, "network_count": 21, - "subscribers_count": 104, + "subscribers_count": 105, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -4899,7 +4899,7 @@ } }, "network_count": 27, - "subscribers_count": 108, + "subscribers_count": 109, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -5122,7 +5122,7 @@ } }, "network_count": 2, - "subscribers_count": 70, + "subscribers_count": 71, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -5304,9 +5304,9 @@ "url": "https://api.github.com/repos/nf-core/createpanelrefs", "created_at": "2023-07-06T12:47:04Z", "updated_at": "2024-09-28T10:53:48Z", - "pushed_at": "2024-06-12T15:05:06Z", + "pushed_at": "2024-10-08T12:30:19Z", "homepage": "https://nf-co.re/createpanelrefs", - "size": 2780, + "size": 2801, "stargazers_count": 6, "watchers_count": 6, "language": "Nextflow", @@ -5319,14 +5319,14 @@ "forks_count": 7, "archived": false, "disabled": false, - "open_issues_count": 5, + "open_issues_count": 6, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 7, - "open_issues": 5, + "open_issues": 6, "watchers": 6, "default_branch": "dev", "temp_clone_token": "", @@ -5360,7 +5360,7 @@ } }, "network_count": 7, - "subscribers_count": 152, + "subscribers_count": 153, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -5417,7 +5417,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/createpanelrefs", "contributors": [ { @@ -5507,9 +5507,9 @@ "url": "https://api.github.com/repos/nf-core/createtaxdb", "created_at": "2023-10-24T08:41:35Z", "updated_at": "2024-10-08T04:15:18Z", - "pushed_at": "2024-10-08T04:15:14Z", + "pushed_at": "2024-10-08T14:34:46Z", "homepage": "https://nf-co.re/createtaxdb", - "size": 3046, + "size": 3083, "stargazers_count": 7, "watchers_count": 7, "language": "Nextflow", @@ -5522,7 +5522,7 @@ "forks_count": 3, "archived": false, "disabled": false, - "open_issues_count": 15, + "open_issues_count": 16, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -5536,7 +5536,7 @@ ], "visibility": "public", "forks": 3, - "open_issues": 15, + "open_issues": 16, "watchers": 7, "default_branch": "dev", "temp_clone_token": "", @@ -5570,7 +5570,7 @@ } }, "network_count": 3, - "subscribers_count": 161, + "subscribers_count": 162, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -5639,7 +5639,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/createtaxdb", "contributors": [ { @@ -5720,9 +5720,9 @@ "url": "https://api.github.com/repos/nf-core/crisprseq", "created_at": "2022-07-14T11:14:34Z", "updated_at": "2024-09-17T14:24:00Z", - "pushed_at": "2024-10-07T10:38:57Z", + "pushed_at": "2024-10-08T12:30:40Z", "homepage": "https://nf-co.re/crisprseq", - "size": 19095, + "size": 19096, "stargazers_count": 25, "watchers_count": 25, "language": "Nextflow", @@ -5781,7 +5781,7 @@ } }, "network_count": 25, - "subscribers_count": 138, + "subscribers_count": 139, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -5855,7 +5855,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/122266583?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "b2c583a3fda29d464be5e7d1957eac5bc11d49fa", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/crisprseq/compare/b2c583a3fda29d464be5e7d1957eac5bc11d49fa...b2c583a3fda29d464be5e7d1957eac5bc11d49fa", @@ -6211,7 +6211,7 @@ } }, "network_count": 5, - "subscribers_count": 138, + "subscribers_count": 139, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -6348,9 +6348,9 @@ "url": "https://api.github.com/repos/nf-core/cutandrun", "created_at": "2021-01-14T11:47:23Z", "updated_at": "2024-10-07T10:20:28Z", - "pushed_at": "2024-07-24T15:10:03Z", + "pushed_at": "2024-10-08T12:30:50Z", "homepage": "https://nf-co.re/cutandrun", - "size": 9018, + "size": 9047, "stargazers_count": 80, "watchers_count": 80, "language": "Nextflow", @@ -6409,7 +6409,7 @@ } }, "network_count": 46, - "subscribers_count": 150, + "subscribers_count": 151, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -6958,9 +6958,9 @@ "url": "https://api.github.com/repos/nf-core/datasync", "created_at": "2024-02-26T10:30:52Z", "updated_at": "2024-09-03T10:14:55Z", - "pushed_at": "2024-05-09T11:40:26Z", + "pushed_at": "2024-10-08T12:30:45Z", "homepage": "https://nf-co.re/datasync", - "size": 447, + "size": 486, "stargazers_count": 7, "watchers_count": 7, "language": "Nextflow", @@ -7998,9 +7998,9 @@ "url": "https://api.github.com/repos/nf-core/demo", "created_at": "2024-05-05T12:11:15Z", "updated_at": "2024-09-26T12:16:09Z", - "pushed_at": "2024-07-18T13:39:08Z", + "pushed_at": "2024-10-08T12:30:40Z", "homepage": "https://nf-co.re/demo", - "size": 483, + "size": 505, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -8013,7 +8013,7 @@ "forks_count": 6, "archived": false, "disabled": false, - "open_issues_count": 2, + "open_issues_count": 3, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -8024,7 +8024,7 @@ ], "visibility": "public", "forks": 6, - "open_issues": 2, + "open_issues": 3, "watchers": 3, "default_branch": "master", "temp_clone_token": "", @@ -8098,7 +8098,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/demo", "contributors": [ { @@ -8112,7 +8112,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/6169021?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "705f18e4b1540f207cf8ffdc97ee5bd70a0b022c", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/demo/compare/705f18e4b1540f207cf8ffdc97ee5bd70a0b022c...705f18e4b1540f207cf8ffdc97ee5bd70a0b022c", @@ -8184,9 +8184,9 @@ "url": "https://api.github.com/repos/nf-core/demultiplex", "created_at": "2020-03-05T15:48:10Z", "updated_at": "2024-10-07T14:39:02Z", - "pushed_at": "2024-10-07T19:12:23Z", + "pushed_at": "2024-10-08T12:30:51Z", "homepage": "https://nf-co.re/demultiplex", - "size": 13763, + "size": 13775, "stargazers_count": 43, "watchers_count": 43, "language": "Nextflow", @@ -8199,7 +8199,7 @@ "forks_count": 36, "archived": false, "disabled": false, - "open_issues_count": 20, + "open_issues_count": 21, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -8212,7 +8212,7 @@ ], "visibility": "public", "forks": 36, - "open_issues": 20, + "open_issues": 21, "watchers": 43, "default_branch": "master", "temp_clone_token": "", @@ -8246,7 +8246,7 @@ } }, "network_count": 36, - "subscribers_count": 88, + "subscribers_count": 89, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -8293,7 +8293,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/demultiplex", "contributors": [ { @@ -8407,7 +8407,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "ebefeef236f0e566e2c874f483535c70d198c862", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/demultiplex/compare/ebefeef236f0e566e2c874f483535c70d198c862...ebefeef236f0e566e2c874f483535c70d198c862", @@ -9201,9 +9201,9 @@ "url": "https://api.github.com/repos/nf-core/denovotranscript", "created_at": "2024-06-27T04:30:51Z", "updated_at": "2024-09-03T10:11:45Z", - "pushed_at": "2024-08-18T23:26:03Z", + "pushed_at": "2024-10-08T12:29:50Z", "homepage": "https://nf-co.re/denovotranscript/", - "size": 1279, + "size": 1300, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -9216,7 +9216,7 @@ "forks_count": 2, "archived": false, "disabled": false, - "open_issues_count": 1, + "open_issues_count": 2, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -9227,7 +9227,7 @@ ], "visibility": "public", "forks": 2, - "open_issues": 1, + "open_issues": 2, "watchers": 3, "default_branch": "master", "temp_clone_token": "", @@ -9261,7 +9261,7 @@ } }, "network_count": 2, - "subscribers_count": 185, + "subscribers_count": 186, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -9325,7 +9325,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/denovotranscript", "contributors": [ { @@ -9339,7 +9339,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/76944764?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "27bb1e7924f01fa1e9cd624aeddc7d11b7a8c5fe", "last_release_is_head": false, "last_release_vs_default_compare_url": "https://github.com/nf-core/denovotranscript/compare/27bb1e7924f01fa1e9cd624aeddc7d11b7a8c5fe...558ff4b639039ac8ec9bece3490841aa17eec971", @@ -9435,9 +9435,9 @@ "url": "https://api.github.com/repos/nf-core/detaxizer", "created_at": "2023-10-30T14:11:55Z", "updated_at": "2024-09-03T11:25:15Z", - "pushed_at": "2024-09-05T12:51:45Z", + "pushed_at": "2024-10-08T12:30:02Z", "homepage": "https://nf-co.re/detaxizer", - "size": 5509, + "size": 5529, "stargazers_count": 13, "watchers_count": 13, "language": "Nextflow", @@ -9450,7 +9450,7 @@ "forks_count": 4, "archived": false, "disabled": false, - "open_issues_count": 1, + "open_issues_count": 2, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -9472,7 +9472,7 @@ ], "visibility": "public", "forks": 4, - "open_issues": 1, + "open_issues": 2, "watchers": 13, "default_branch": "master", "temp_clone_token": "", @@ -9506,7 +9506,7 @@ } }, "network_count": 4, - "subscribers_count": 162, + "subscribers_count": 163, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -9560,7 +9560,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/detaxizer", "contributors": [ { @@ -9724,7 +9724,7 @@ } }, "network_count": 12, - "subscribers_count": 68, + "subscribers_count": 69, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -9981,9 +9981,9 @@ "url": "https://api.github.com/repos/nf-core/differentialabundance", "created_at": "2022-10-12T08:49:25Z", "updated_at": "2024-09-25T10:45:18Z", - "pushed_at": "2024-10-07T13:39:18Z", + "pushed_at": "2024-10-08T12:29:58Z", "homepage": "https://nf-co.re/differentialabundance", - "size": 8538, + "size": 8470, "stargazers_count": 57, "watchers_count": 57, "language": "Nextflow", @@ -9996,7 +9996,7 @@ "forks_count": 32, "archived": false, "disabled": false, - "open_issues_count": 45, + "open_issues_count": 46, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -10014,7 +10014,7 @@ ], "visibility": "public", "forks": 32, - "open_issues": 45, + "open_issues": 46, "watchers": 57, "default_branch": "master", "temp_clone_token": "", @@ -10048,7 +10048,7 @@ } }, "network_count": 32, - "subscribers_count": 142, + "subscribers_count": 143, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -10112,7 +10112,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 5, + "open_pr_count": 6, "repository_url": "https://github.com/nf-core/differentialabundance", "contributors": [ { @@ -10517,9 +10517,9 @@ "url": "https://api.github.com/repos/nf-core/drugresponseeval", "created_at": "2023-08-24T10:02:01Z", "updated_at": "2024-10-03T05:37:01Z", - "pushed_at": "2024-10-04T14:33:25Z", + "pushed_at": "2024-10-08T12:31:33Z", "homepage": "", - "size": 4821, + "size": 4990, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -10532,7 +10532,7 @@ "forks_count": 0, "archived": false, "disabled": false, - "open_issues_count": 4, + "open_issues_count": 5, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -10553,7 +10553,7 @@ ], "visibility": "public", "forks": 0, - "open_issues": 4, + "open_issues": 5, "watchers": 3, "default_branch": "dev", "temp_clone_token": "", @@ -10627,7 +10627,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/drugresponseeval", "contributors": [ { @@ -10686,9 +10686,9 @@ "url": "https://api.github.com/repos/nf-core/dualrnaseq", "created_at": "2020-11-04T11:26:18Z", "updated_at": "2024-09-03T10:14:53Z", - "pushed_at": "2024-05-09T11:40:42Z", + "pushed_at": "2024-10-08T12:30:22Z", "homepage": "https://nf-co.re/dualrnaseq", - "size": 40637, + "size": 40684, "stargazers_count": 18, "watchers_count": 18, "language": "Nextflow", @@ -10913,9 +10913,9 @@ "url": "https://api.github.com/repos/nf-core/eager", "created_at": "2018-06-03T15:52:24Z", "updated_at": "2024-09-26T14:50:40Z", - "pushed_at": "2024-10-04T10:18:47Z", + "pushed_at": "2024-10-08T12:30:07Z", "homepage": "https://nf-co.re/eager", - "size": 67323, + "size": 67344, "stargazers_count": 143, "watchers_count": 143, "language": "Nextflow", @@ -10928,7 +10928,7 @@ "forks_count": 81, "archived": false, "disabled": false, - "open_issues_count": 45, + "open_issues_count": 46, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -10943,7 +10943,7 @@ ], "visibility": "public", "forks": 81, - "open_issues": 45, + "open_issues": 46, "watchers": 143, "default_branch": "master", "temp_clone_token": "", @@ -10977,7 +10977,7 @@ } }, "network_count": 81, - "subscribers_count": 152, + "subscribers_count": 153, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -11091,7 +11091,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/eager", "contributors": [ { @@ -11205,7 +11205,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/61977721?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "65055295800d081fb5c5b9ae14267906c7c55b80", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/eager/compare/65055295800d081fb5c5b9ae14267906c7c55b80...65055295800d081fb5c5b9ae14267906c7c55b80", @@ -11611,9 +11611,9 @@ "url": "https://api.github.com/repos/nf-core/epitopeprediction", "created_at": "2018-11-28T15:37:41Z", "updated_at": "2024-09-18T22:31:44Z", - "pushed_at": "2024-05-17T12:05:03Z", + "pushed_at": "2024-10-08T12:31:07Z", "homepage": "https://nf-co.re/epitopeprediction", - "size": 4476, + "size": 4501, "stargazers_count": 42, "watchers_count": 42, "language": "Nextflow", @@ -11626,7 +11626,7 @@ "forks_count": 22, "archived": false, "disabled": false, - "open_issues_count": 15, + "open_issues_count": 16, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -11637,7 +11637,7 @@ ], "visibility": "public", "forks": 22, - "open_issues": 15, + "open_issues": 16, "watchers": 42, "default_branch": "master", "temp_clone_token": "", @@ -11725,7 +11725,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/epitopeprediction", "contributors": [ { @@ -11779,7 +11779,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "cfbfeb56b2224ae603539e88088ff4170a01dba6", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/epitopeprediction/compare/cfbfeb56b2224ae603539e88088ff4170a01dba6...cfbfeb56b2224ae603539e88088ff4170a01dba6", @@ -12019,7 +12019,7 @@ } }, "network_count": 28, - "subscribers_count": 173, + "subscribers_count": 174, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -12117,9 +12117,9 @@ "url": "https://api.github.com/repos/nf-core/fastquorum", "created_at": "2022-09-10T06:39:22Z", "updated_at": "2024-09-16T21:12:21Z", - "pushed_at": "2024-10-07T15:07:32Z", + "pushed_at": "2024-10-08T12:31:11Z", "homepage": "https://nf-co.re/fastquorum", - "size": 5039, + "size": 5059, "stargazers_count": 20, "watchers_count": 20, "language": "Nextflow", @@ -12132,7 +12132,7 @@ "forks_count": 9, "archived": false, "disabled": false, - "open_issues_count": 13, + "open_issues_count": 14, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -12144,7 +12144,7 @@ ], "visibility": "public", "forks": 9, - "open_issues": 13, + "open_issues": 14, "watchers": 20, "default_branch": "master", "temp_clone_token": "", @@ -12178,7 +12178,7 @@ } }, "network_count": 9, - "subscribers_count": 151, + "subscribers_count": 152, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -12232,7 +12232,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/fastquorum", "contributors": [ { @@ -12256,7 +12256,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/1739?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "6d6395110984ff658748a4ee827fbe0d5cdb7530", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/fastquorum/compare/6d6395110984ff658748a4ee827fbe0d5cdb7530...6d6395110984ff658748a4ee827fbe0d5cdb7530", @@ -12361,9 +12361,9 @@ "url": "https://api.github.com/repos/nf-core/fetchngs", "created_at": "2021-06-03T09:26:41Z", "updated_at": "2024-09-30T18:44:14Z", - "pushed_at": "2024-09-24T20:27:23Z", + "pushed_at": "2024-10-08T12:31:16Z", "homepage": "https://nf-co.re/fetchngs", - "size": 4026, + "size": 4048, "stargazers_count": 149, "watchers_count": 149, "language": "Nextflow", @@ -12425,7 +12425,7 @@ } }, "network_count": 72, - "subscribers_count": 92, + "subscribers_count": 93, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -12883,9 +12883,9 @@ "url": "https://api.github.com/repos/nf-core/funcscan", "created_at": "2021-12-13T10:35:54Z", "updated_at": "2024-10-08T04:25:53Z", - "pushed_at": "2024-09-06T12:06:52Z", + "pushed_at": "2024-10-08T12:31:14Z", "homepage": "https://nf-co.re/funcscan", - "size": 18622, + "size": 18644, "stargazers_count": 71, "watchers_count": 71, "language": "Nextflow", @@ -12898,7 +12898,7 @@ "forks_count": 20, "archived": false, "disabled": false, - "open_issues_count": 13, + "open_issues_count": 14, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -12921,7 +12921,7 @@ ], "visibility": "public", "forks": 20, - "open_issues": 13, + "open_issues": 14, "watchers": 71, "default_branch": "master", "temp_clone_token": "", @@ -12955,7 +12955,7 @@ } }, "network_count": 20, - "subscribers_count": 90, + "subscribers_count": 91, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -13139,7 +13139,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/funcscan", "contributors": [ { @@ -13203,7 +13203,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/31576?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "66e7a337def880472b06eaf0a2b2dc09e32ce399", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/funcscan/compare/66e7a337def880472b06eaf0a2b2dc09e32ce399...66e7a337def880472b06eaf0a2b2dc09e32ce399", @@ -13848,7 +13848,7 @@ } }, "network_count": 12, - "subscribers_count": 155, + "subscribers_count": 156, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -13984,9 +13984,9 @@ "url": "https://api.github.com/repos/nf-core/genomeassembler", "created_at": "2022-03-24T14:41:45Z", "updated_at": "2024-09-27T12:44:42Z", - "pushed_at": "2024-05-09T11:42:43Z", + "pushed_at": "2024-10-08T12:31:31Z", "homepage": "https://nf-co.re/genomeassembler", - "size": 2712, + "size": 2761, "stargazers_count": 16, "watchers_count": 16, "language": "Nextflow", @@ -14198,9 +14198,9 @@ "url": "https://api.github.com/repos/nf-core/genomeskim", "created_at": "2022-08-09T10:36:07Z", "updated_at": "2024-09-26T05:05:08Z", - "pushed_at": "2024-05-13T07:38:03Z", + "pushed_at": "2024-10-08T12:31:39Z", "homepage": "https://nf-co.re/genomeskim", - "size": 2564, + "size": 2607, "stargazers_count": 3, "watchers_count": 3, "language": null, @@ -14260,7 +14260,7 @@ } }, "network_count": 3, - "subscribers_count": 161, + "subscribers_count": 160, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -14350,9 +14350,9 @@ "url": "https://api.github.com/repos/nf-core/gwas", "created_at": "2020-07-13T13:58:04Z", "updated_at": "2024-09-18T22:31:32Z", - "pushed_at": "2024-05-09T11:41:12Z", + "pushed_at": "2024-10-08T12:31:28Z", "homepage": "https://nf-co.re/gwas", - "size": 2821, + "size": 2842, "stargazers_count": 22, "watchers_count": 22, "language": "Nextflow", @@ -14572,9 +14572,9 @@ "url": "https://api.github.com/repos/nf-core/hgtseq", "created_at": "2022-04-12T14:05:05Z", "updated_at": "2024-09-05T09:35:22Z", - "pushed_at": "2024-05-09T12:21:39Z", + "pushed_at": "2024-10-08T12:30:32Z", "homepage": "https://nf-co.re/hgtseq", - "size": 5355, + "size": 5377, "stargazers_count": 21, "watchers_count": 21, "language": "Nextflow", @@ -14869,9 +14869,9 @@ "url": "https://api.github.com/repos/nf-core/hic", "created_at": "2019-04-09T14:29:19Z", "updated_at": "2024-10-03T19:59:42Z", - "pushed_at": "2024-07-18T20:38:33Z", + "pushed_at": "2024-10-08T12:30:42Z", "homepage": "https://nf-co.re/hic", - "size": 3790, + "size": 3814, "stargazers_count": 90, "watchers_count": 90, "language": "Nextflow", @@ -14884,7 +14884,7 @@ "forks_count": 54, "archived": false, "disabled": false, - "open_issues_count": 29, + "open_issues_count": 30, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -14894,7 +14894,7 @@ ], "visibility": "public", "forks": 54, - "open_issues": 29, + "open_issues": 30, "watchers": 90, "default_branch": "master", "temp_clone_token": "", @@ -14992,7 +14992,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/hic", "contributors": [ { @@ -15225,9 +15225,9 @@ "url": "https://api.github.com/repos/nf-core/hicar", "created_at": "2021-08-12T15:11:34Z", "updated_at": "2024-09-07T16:36:28Z", - "pushed_at": "2024-07-12T20:23:44Z", + "pushed_at": "2024-10-08T12:30:44Z", "homepage": "https://nf-co.re/hicar", - "size": 36291, + "size": 36255, "stargazers_count": 6, "watchers_count": 6, "language": "Nextflow", @@ -15537,9 +15537,9 @@ "url": "https://api.github.com/repos/nf-core/hlatyping", "created_at": "2018-07-11T12:42:26Z", "updated_at": "2024-09-18T22:32:04Z", - "pushed_at": "2024-08-05T06:31:07Z", + "pushed_at": "2024-10-08T12:30:51Z", "homepage": "https://nf-co.re/hlatyping", - "size": 41204, + "size": 41225, "stargazers_count": 61, "watchers_count": 61, "language": "Nextflow", @@ -15552,7 +15552,7 @@ "forks_count": 30, "archived": false, "disabled": false, - "open_issues_count": 8, + "open_issues_count": 9, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -15567,7 +15567,7 @@ ], "visibility": "public", "forks": 30, - "open_issues": 8, + "open_issues": 9, "watchers": 61, "default_branch": "master", "temp_clone_token": "", @@ -15665,7 +15665,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/hlatyping", "contributors": [ { @@ -15885,9 +15885,9 @@ "url": "https://api.github.com/repos/nf-core/imcyto", "created_at": "2019-07-23T12:12:42Z", "updated_at": "2024-09-24T18:52:23Z", - "pushed_at": "2024-05-09T12:21:38Z", + "pushed_at": "2024-10-08T12:30:39Z", "homepage": "https://nf-co.re/imcyto", - "size": 9200, + "size": 9232, "stargazers_count": 25, "watchers_count": 25, "language": "Python", @@ -16092,12 +16092,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/isoseq", "created_at": "2022-06-03T10:07:33Z", - "updated_at": "2024-09-26T21:11:09Z", - "pushed_at": "2024-09-05T16:19:40Z", + "updated_at": "2024-10-08T15:00:26Z", + "pushed_at": "2024-10-08T12:31:50Z", "homepage": "https://nf-co.re/isoseq", - "size": 5259, - "stargazers_count": 28, - "watchers_count": 28, + "size": 5280, + "stargazers_count": 29, + "watchers_count": 29, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -16108,7 +16108,7 @@ "forks_count": 13, "archived": false, "disabled": false, - "open_issues_count": 3, + "open_issues_count": 4, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -16121,8 +16121,8 @@ ], "visibility": "public", "forks": 13, - "open_issues": 3, - "watchers": 28, + "open_issues": 4, + "watchers": 29, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -16155,7 +16155,7 @@ } }, "network_count": 13, - "subscribers_count": 78, + "subscribers_count": 79, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -16219,7 +16219,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/isoseq", "contributors": [ { @@ -16228,7 +16228,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/4322805?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "c7536ab0e18a27460476d4e8557845950292f070", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/isoseq/compare/c7536ab0e18a27460476d4e8557845950292f070...c7536ab0e18a27460476d4e8557845950292f070", @@ -16573,7 +16573,7 @@ } }, "network_count": 11, - "subscribers_count": 140, + "subscribers_count": 141, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -17582,9 +17582,9 @@ "url": "https://api.github.com/repos/nf-core/mag", "created_at": "2018-05-22T06:06:58Z", "updated_at": "2024-10-04T07:27:02Z", - "pushed_at": "2024-10-04T07:57:32Z", + "pushed_at": "2024-10-08T13:28:05Z", "homepage": "https://nf-co.re/mag", - "size": 21046, + "size": 21074, "stargazers_count": 209, "watchers_count": 209, "language": "Nextflow", @@ -17597,7 +17597,7 @@ "forks_count": 107, "archived": false, "disabled": false, - "open_issues_count": 61, + "open_issues_count": 62, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -17613,7 +17613,7 @@ ], "visibility": "public", "forks": 107, - "open_issues": 61, + "open_issues": 62, "watchers": 209, "default_branch": "master", "temp_clone_token": "", @@ -17647,7 +17647,7 @@ } }, "network_count": 107, - "subscribers_count": 153, + "subscribers_count": 154, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -17791,7 +17791,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 6, + "open_pr_count": 7, "repository_url": "https://github.com/nf-core/mag", "contributors": [ { @@ -17950,7 +17950,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "cf931af514a7606d82e98b38260147a7cddbdbee", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/mag/compare/cf931af514a7606d82e98b38260147a7cddbdbee...cf931af514a7606d82e98b38260147a7cddbdbee", @@ -18944,8 +18944,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-04T07:57:29Z", - "tag_sha": "23bf9dfb0fb7d6542580cb258b104f4d758b572b", + "published_at": "2024-10-08T13:25:05Z", + "tag_sha": "1d3eff9d18ded8032dcf2af97b28a6178a8463e2", "has_schema": true, "doc_files": [ "docs/output.md", @@ -19023,9 +19023,9 @@ "url": "https://api.github.com/repos/nf-core/magmap", "created_at": "2022-09-07T08:56:06Z", "updated_at": "2024-10-01T15:16:02Z", - "pushed_at": "2024-10-08T07:48:48Z", + "pushed_at": "2024-10-08T12:31:53Z", "homepage": null, - "size": 3290, + "size": 3303, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -19038,14 +19038,14 @@ "forks_count": 4, "archived": false, "disabled": false, - "open_issues_count": 6, + "open_issues_count": 8, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 4, - "open_issues": 6, + "open_issues": 8, "watchers": 3, "default_branch": "master", "temp_clone_token": "", @@ -19079,7 +19079,7 @@ } }, "network_count": 4, - "subscribers_count": 174, + "subscribers_count": 175, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -19119,7 +19119,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/magmap", "contributors": [], "released_after_tools": false, @@ -19189,9 +19189,9 @@ "url": "https://api.github.com/repos/nf-core/marsseq", "created_at": "2021-07-20T20:57:04Z", "updated_at": "2024-08-06T07:24:57Z", - "pushed_at": "2024-05-09T11:43:46Z", + "pushed_at": "2024-10-08T12:32:01Z", "homepage": "https://nf-co.re/marsseq", - "size": 3122, + "size": 3143, "stargazers_count": 5, "watchers_count": 5, "language": "Nextflow", @@ -19252,7 +19252,7 @@ } }, "network_count": 3, - "subscribers_count": 159, + "subscribers_count": 158, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -19516,9 +19516,9 @@ "url": "https://api.github.com/repos/nf-core/mcmicro", "created_at": "2023-06-21T18:40:14Z", "updated_at": "2024-09-18T22:25:17Z", - "pushed_at": "2024-08-19T20:47:01Z", + "pushed_at": "2024-10-08T12:30:47Z", "homepage": "https://nf-co.re/mcmicro", - "size": 2761, + "size": 2778, "stargazers_count": 8, "watchers_count": 8, "language": "Nextflow", @@ -19531,7 +19531,7 @@ "forks_count": 15, "archived": false, "disabled": false, - "open_issues_count": 21, + "open_issues_count": 22, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -19551,7 +19551,7 @@ ], "visibility": "public", "forks": 15, - "open_issues": 21, + "open_issues": 22, "watchers": 8, "default_branch": "dev", "temp_clone_token": "", @@ -19585,7 +19585,7 @@ } }, "network_count": 15, - "subscribers_count": 146, + "subscribers_count": 147, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -19649,7 +19649,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/mcmicro", "contributors": [ { @@ -19734,9 +19734,9 @@ "url": "https://api.github.com/repos/nf-core/meerpipe", "created_at": "2023-05-24T00:09:36Z", "updated_at": "2024-10-05T06:01:47Z", - "pushed_at": "2024-05-13T07:23:39Z", + "pushed_at": "2024-10-08T12:32:02Z", "homepage": "", - "size": 2989, + "size": 3029, "stargazers_count": 5, "watchers_count": 5, "language": "Nextflow", @@ -19790,7 +19790,7 @@ } }, "network_count": 2, - "subscribers_count": 199, + "subscribers_count": 198, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -19891,9 +19891,9 @@ "url": "https://api.github.com/repos/nf-core/metaboigniter", "created_at": "2020-03-26T14:38:21Z", "updated_at": "2024-09-03T10:13:16Z", - "pushed_at": "2024-05-22T08:19:42Z", + "pushed_at": "2024-10-08T12:30:58Z", "homepage": "https://nf-co.re/metaboigniter", - "size": 48419, + "size": 48440, "stargazers_count": 16, "watchers_count": 16, "language": "Nextflow", @@ -19906,7 +19906,7 @@ "forks_count": 14, "archived": false, "disabled": false, - "open_issues_count": 3, + "open_issues_count": 4, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -19920,7 +19920,7 @@ ], "visibility": "public", "forks": 14, - "open_issues": 3, + "open_issues": 4, "watchers": 16, "default_branch": "master", "temp_clone_token": "", @@ -19954,7 +19954,7 @@ } }, "network_count": 14, - "subscribers_count": 32, + "subscribers_count": 33, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -20018,7 +20018,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/metaboigniter", "contributors": [ { @@ -20157,9 +20157,9 @@ "url": "https://api.github.com/repos/nf-core/metapep", "created_at": "2021-12-13T08:45:24Z", "updated_at": "2024-09-30T08:39:54Z", - "pushed_at": "2024-09-30T08:39:48Z", + "pushed_at": "2024-10-08T12:30:54Z", "homepage": "https://nf-co.re/metapep", - "size": 8630, + "size": 8582, "stargazers_count": 8, "watchers_count": 8, "language": "Nextflow", @@ -20172,14 +20172,14 @@ "forks_count": 5, "archived": false, "disabled": false, - "open_issues_count": 15, + "open_issues_count": 16, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 5, - "open_issues": 15, + "open_issues": 16, "watchers": 8, "default_branch": "dev", "temp_clone_token": "", @@ -20213,7 +20213,7 @@ } }, "network_count": 5, - "subscribers_count": 58, + "subscribers_count": 59, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -20377,7 +20377,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 3, + "open_pr_count": 4, "repository_url": "https://github.com/nf-core/metapep", "contributors": [ { @@ -20448,9 +20448,9 @@ "url": "https://api.github.com/repos/nf-core/metatdenovo", "created_at": "2021-10-19T18:58:24Z", "updated_at": "2024-10-01T15:15:40Z", - "pushed_at": "2024-09-06T13:57:56Z", + "pushed_at": "2024-10-08T12:30:53Z", "homepage": "https://nf-co.re/metatdenovo", - "size": 13884, + "size": 13905, "stargazers_count": 22, "watchers_count": 22, "language": "Nextflow", @@ -20463,7 +20463,7 @@ "forks_count": 10, "archived": false, "disabled": false, - "open_issues_count": 9, + "open_issues_count": 10, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -20476,7 +20476,7 @@ ], "visibility": "public", "forks": 10, - "open_issues": 9, + "open_issues": 10, "watchers": 22, "default_branch": "master", "temp_clone_token": "", @@ -20510,7 +20510,7 @@ } }, "network_count": 10, - "subscribers_count": 144, + "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -20574,7 +20574,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/metatdenovo", "contributors": [ { @@ -20752,9 +20752,9 @@ "url": "https://api.github.com/repos/nf-core/methylarray", "created_at": "2024-08-29T12:05:47Z", "updated_at": "2024-10-06T15:06:36Z", - "pushed_at": "2024-10-06T15:06:32Z", + "pushed_at": "2024-10-08T12:32:06Z", "homepage": null, - "size": 20147, + "size": 20320, "stargazers_count": 1, "watchers_count": 1, "language": "Nextflow", @@ -20767,14 +20767,14 @@ "forks_count": 0, "archived": false, "disabled": false, - "open_issues_count": 0, + "open_issues_count": 1, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 0, - "open_issues": 0, + "open_issues": 1, "watchers": 1, "default_branch": "dev", "temp_clone_token": "", @@ -20838,7 +20838,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": -1, "has_required_topics": false, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/methylarray", "contributors": [ { @@ -20901,9 +20901,9 @@ "url": "https://api.github.com/repos/nf-core/methylseq", "created_at": "2018-03-12T15:46:42Z", "updated_at": "2024-10-04T11:42:38Z", - "pushed_at": "2024-10-01T16:40:29Z", + "pushed_at": "2024-10-08T12:32:03Z", "homepage": "https://nf-co.re/methylseq", - "size": 21291, + "size": 21303, "stargazers_count": 137, "watchers_count": 137, "language": "Nextflow", @@ -20916,7 +20916,7 @@ "forks_count": 142, "archived": false, "disabled": false, - "open_issues_count": 44, + "open_issues_count": 45, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -20932,7 +20932,7 @@ ], "visibility": "public", "forks": 142, - "open_issues": 44, + "open_issues": 45, "watchers": 137, "default_branch": "master", "temp_clone_token": "", @@ -20966,7 +20966,7 @@ } }, "network_count": 142, - "subscribers_count": 143, + "subscribers_count": 144, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -21013,7 +21013,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 4, + "open_pr_count": 5, "repository_url": "https://github.com/nf-core/methylseq", "contributors": [ { @@ -21571,9 +21571,9 @@ "url": "https://api.github.com/repos/nf-core/mhcquant", "created_at": "2018-10-24T14:28:19Z", "updated_at": "2024-09-03T15:48:04Z", - "pushed_at": "2024-09-19T13:00:28Z", + "pushed_at": "2024-10-08T13:38:42Z", "homepage": "https://nf-co.re/mhcquant", - "size": 26515, + "size": 26437, "stargazers_count": 32, "watchers_count": 32, "language": "Nextflow", @@ -21634,7 +21634,7 @@ } }, "network_count": 25, - "subscribers_count": 80, + "subscribers_count": 81, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -21767,7 +21767,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "1b3069246d10ec305ec2f478f490ec05aa734ce5", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/mhcquant/compare/1b3069246d10ec305ec2f478f490ec05aa734ce5...1b3069246d10ec305ec2f478f490ec05aa734ce5", @@ -22074,8 +22074,8 @@ }, { "tag_name": "dev", - "published_at": "2024-09-19T13:00:27Z", - "tag_sha": "da9fc4d0c4e86f59434bae6d73041112cf4d1685", + "published_at": "2024-10-08T13:38:42Z", + "tag_sha": "2b89f80de1b58ef1f38495dcf236e7c18d66315c", "has_schema": true, "doc_files": [ "docs/output.md", @@ -22087,6 +22087,7 @@ "multiqc", "openms_decoydatabase", "openms_idfilter", + "openms_idmassaccuracy", "openms_idmerger", "openms_idripper", "openms_idscoreswitcher", @@ -22174,7 +22175,7 @@ } }, "network_count": 9, - "subscribers_count": 134, + "subscribers_count": 135, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -22316,9 +22317,9 @@ "url": "https://api.github.com/repos/nf-core/molkart", "created_at": "2023-06-26T13:35:52Z", "updated_at": "2024-09-25T09:40:05Z", - "pushed_at": "2024-09-24T15:25:00Z", + "pushed_at": "2024-10-08T12:31:18Z", "homepage": "https://nf-co.re/molkart", - "size": 5446, + "size": 5477, "stargazers_count": 10, "watchers_count": 10, "language": "Nextflow", @@ -22331,7 +22332,7 @@ "forks_count": 7, "archived": false, "disabled": false, - "open_issues_count": 10, + "open_issues_count": 11, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -22347,7 +22348,7 @@ ], "visibility": "public", "forks": 7, - "open_issues": 10, + "open_issues": 11, "watchers": 10, "default_branch": "master", "temp_clone_token": "", @@ -22381,7 +22382,7 @@ } }, "network_count": 7, - "subscribers_count": 146, + "subscribers_count": 147, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -22428,7 +22429,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/molkart", "contributors": [ { @@ -22523,9 +22524,9 @@ "url": "https://api.github.com/repos/nf-core/multiplesequencealign", "created_at": "2023-07-24T14:30:12Z", "updated_at": "2024-10-07T12:15:15Z", - "pushed_at": "2024-10-04T08:56:23Z", + "pushed_at": "2024-10-08T12:31:09Z", "homepage": "https://nf-co.re/multiplesequencealign", - "size": 15172, + "size": 15185, "stargazers_count": 17, "watchers_count": 17, "language": "Nextflow", @@ -22538,14 +22539,14 @@ "forks_count": 11, "archived": false, "disabled": false, - "open_issues_count": 2, + "open_issues_count": 3, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 11, - "open_issues": 2, + "open_issues": 3, "watchers": 17, "default_branch": "master", "temp_clone_token": "", @@ -22579,7 +22580,7 @@ } }, "network_count": 11, - "subscribers_count": 142, + "subscribers_count": 143, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -22658,7 +22659,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/multiplesequencealign", "contributors": [ { @@ -22692,7 +22693,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/61584065?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "970b3129a9caeebdf122c8daed5399c400155eef", "last_release_is_head": false, "last_release_vs_default_compare_url": "https://github.com/nf-core/multiplesequencealign/compare/970b3129a9caeebdf122c8daed5399c400155eef...9e83630c5a40fe48694db80bd855d1dac429ee87", @@ -22808,9 +22809,9 @@ "url": "https://api.github.com/repos/nf-core/nanoseq", "created_at": "2019-09-09T11:23:29Z", "updated_at": "2024-10-07T19:46:05Z", - "pushed_at": "2024-09-19T09:21:57Z", + "pushed_at": "2024-10-08T12:32:22Z", "homepage": "https://nf-co.re/nanoseq", - "size": 7064, + "size": 7086, "stargazers_count": 176, "watchers_count": 176, "language": "Nextflow", @@ -22823,7 +22824,7 @@ "forks_count": 80, "archived": false, "disabled": false, - "open_issues_count": 36, + "open_issues_count": 37, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -22835,7 +22836,7 @@ ], "visibility": "public", "forks": 80, - "open_issues": 36, + "open_issues": 37, "watchers": 176, "default_branch": "master", "temp_clone_token": "", @@ -22869,7 +22870,7 @@ } }, "network_count": 80, - "subscribers_count": 131, + "subscribers_count": 132, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -22943,7 +22944,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/nanoseq", "contributors": [ { @@ -23212,9 +23213,9 @@ "url": "https://api.github.com/repos/nf-core/nanostring", "created_at": "2022-01-10T14:24:34Z", "updated_at": "2024-09-03T10:11:30Z", - "pushed_at": "2024-09-24T14:39:04Z", + "pushed_at": "2024-10-08T12:32:21Z", "homepage": "https://nf-co.re/nanostring", - "size": 4530, + "size": 4552, "stargazers_count": 13, "watchers_count": 13, "language": "Nextflow", @@ -23227,7 +23228,7 @@ "forks_count": 6, "archived": false, "disabled": false, - "open_issues_count": 3, + "open_issues_count": 4, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -23237,7 +23238,7 @@ ], "visibility": "public", "forks": 6, - "open_issues": 3, + "open_issues": 4, "watchers": 13, "default_branch": "master", "temp_clone_token": "", @@ -23271,7 +23272,7 @@ } }, "network_count": 6, - "subscribers_count": 152, + "subscribers_count": 153, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -23325,7 +23326,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/nanostring", "contributors": [ { @@ -23354,7 +23355,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/7051479?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "e765843c16d2bfe90c72e31a7a3719466d1bdfb0", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/nanostring/compare/e765843c16d2bfe90c72e31a7a3719466d1bdfb0...e765843c16d2bfe90c72e31a7a3719466d1bdfb0", @@ -23504,9 +23505,9 @@ "url": "https://api.github.com/repos/nf-core/nascent", "created_at": "2018-11-15T15:46:09Z", "updated_at": "2024-09-06T05:39:17Z", - "pushed_at": "2024-10-08T02:58:11Z", + "pushed_at": "2024-10-08T12:32:19Z", "homepage": "https://nf-co.re/nascent", - "size": 8598, + "size": 8618, "stargazers_count": 18, "watchers_count": 18, "language": "Nextflow", @@ -23519,7 +23520,7 @@ "forks_count": 10, "archived": false, "disabled": false, - "open_issues_count": 41, + "open_issues_count": 42, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -23533,7 +23534,7 @@ ], "visibility": "public", "forks": 10, - "open_issues": 41, + "open_issues": 42, "watchers": 18, "default_branch": "master", "temp_clone_token": "", @@ -23567,7 +23568,7 @@ } }, "network_count": 10, - "subscribers_count": 149, + "subscribers_count": 150, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -23631,7 +23632,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 5, + "open_pr_count": 6, "repository_url": "https://github.com/nf-core/nascent", "contributors": [ { @@ -24091,7 +24092,7 @@ } }, "network_count": 7, - "subscribers_count": 172, + "subscribers_count": 173, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -24299,7 +24300,7 @@ } }, "network_count": 4, - "subscribers_count": 187, + "subscribers_count": 188, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -24405,9 +24406,9 @@ "url": "https://api.github.com/repos/nf-core/oncoanalyser", "created_at": "2022-12-22T05:01:49Z", "updated_at": "2024-09-15T18:34:09Z", - "pushed_at": "2024-10-08T05:34:57Z", + "pushed_at": "2024-10-08T12:31:18Z", "homepage": "https://nf-co.re/oncoanalyser", - "size": 4921, + "size": 4943, "stargazers_count": 40, "watchers_count": 40, "language": "Nextflow", @@ -24420,14 +24421,14 @@ "forks_count": 7, "archived": false, "disabled": false, - "open_issues_count": 13, + "open_issues_count": 14, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 7, - "open_issues": 13, + "open_issues": 14, "watchers": 40, "default_branch": "master", "temp_clone_token": "", @@ -24461,7 +24462,7 @@ } }, "network_count": 7, - "subscribers_count": 164, + "subscribers_count": 165, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -24525,7 +24526,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/oncoanalyser", "contributors": [ { @@ -24544,7 +24545,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/13191541?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "4227bc1083209d79c8735d32e6c75f762a640006", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/oncoanalyser/compare/4227bc1083209d79c8735d32e6c75f762a640006...4227bc1083209d79c8735d32e6c75f762a640006", @@ -24626,9 +24627,9 @@ "url": "https://api.github.com/repos/nf-core/pairgenomealign", "created_at": "2024-05-24T01:40:57Z", "updated_at": "2024-09-25T15:25:20Z", - "pushed_at": "2024-10-02T00:37:04Z", + "pushed_at": "2024-10-08T12:32:26Z", "homepage": "https://nf-co.re/pairgenomealign", - "size": 1632, + "size": 1779, "stargazers_count": 6, "watchers_count": 6, "language": "Nextflow", @@ -24641,7 +24642,7 @@ "forks_count": 2, "archived": false, "disabled": false, - "open_issues_count": 1, + "open_issues_count": 2, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -24656,7 +24657,7 @@ ], "visibility": "public", "forks": 2, - "open_issues": 1, + "open_issues": 2, "watchers": 6, "default_branch": "master", "temp_clone_token": "", @@ -24690,7 +24691,7 @@ } }, "network_count": 2, - "subscribers_count": 183, + "subscribers_count": 184, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -24754,7 +24755,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/pairgenomealign", "contributors": [ { @@ -24768,7 +24769,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/143203715?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "95a1effadad83ea714577b3438e31775b2b7fa52", "last_release_is_head": false, "last_release_vs_default_compare_url": "https://github.com/nf-core/pairgenomealign/compare/95a1effadad83ea714577b3438e31775b2b7fa52...c493be3ba884299576f4f91c2064b1aa8c7aa8f6", @@ -24854,9 +24855,9 @@ "url": "https://api.github.com/repos/nf-core/pangenome", "created_at": "2020-11-08T18:02:43Z", "updated_at": "2024-09-27T15:29:24Z", - "pushed_at": "2024-07-08T08:26:27Z", + "pushed_at": "2024-10-08T12:31:27Z", "homepage": "https://nf-co.re/pangenome", - "size": 4360, + "size": 4389, "stargazers_count": 65, "watchers_count": 65, "language": "Nextflow", @@ -24912,7 +24913,7 @@ } }, "network_count": 16, - "subscribers_count": 52, + "subscribers_count": 53, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -25234,9 +25235,9 @@ "url": "https://api.github.com/repos/nf-core/pathogensurveillance", "created_at": "2023-01-12T17:57:12Z", "updated_at": "2024-09-03T10:11:58Z", - "pushed_at": "2024-08-07T07:58:39Z", + "pushed_at": "2024-10-08T12:32:50Z", "homepage": "https://nf-co.re/pathogensurveillance", - "size": 262577, + "size": 262596, "stargazers_count": 11, "watchers_count": 11, "language": "HTML", @@ -25290,7 +25291,7 @@ } }, "network_count": 5, - "subscribers_count": 168, + "subscribers_count": 169, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -25918,9 +25919,9 @@ "url": "https://api.github.com/repos/nf-core/phageannotator", "created_at": "2023-07-14T20:36:38Z", "updated_at": "2024-09-06T10:36:41Z", - "pushed_at": "2024-07-09T18:20:47Z", + "pushed_at": "2024-10-08T12:31:36Z", "homepage": "https://nf-co.re/phageannotator", - "size": 5281, + "size": 5314, "stargazers_count": 10, "watchers_count": 10, "language": "Nextflow", @@ -26136,9 +26137,9 @@ "url": "https://api.github.com/repos/nf-core/phaseimpute", "created_at": "2023-07-12T14:41:51Z", "updated_at": "2024-08-31T21:13:27Z", - "pushed_at": "2024-08-31T21:13:23Z", + "pushed_at": "2024-10-08T12:31:32Z", "homepage": null, - "size": 10554, + "size": 10575, "stargazers_count": 16, "watchers_count": 16, "language": "Nextflow", @@ -26151,14 +26152,14 @@ "forks_count": 13, "archived": false, "disabled": false, - "open_issues_count": 14, + "open_issues_count": 15, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 13, - "open_issues": 14, + "open_issues": 15, "watchers": 16, "default_branch": "dev", "temp_clone_token": "", @@ -26192,7 +26193,7 @@ } }, "network_count": 13, - "subscribers_count": 157, + "subscribers_count": 158, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -26221,7 +26222,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/phaseimpute", "contributors": [ { @@ -26337,9 +26338,9 @@ "url": "https://api.github.com/repos/nf-core/phyloplace", "created_at": "2022-08-12T07:24:52Z", "updated_at": "2024-09-03T10:35:26Z", - "pushed_at": "2024-08-28T15:07:25Z", + "pushed_at": "2024-10-08T12:31:30Z", "homepage": "https://nf-co.re/phyloplace", - "size": 3048, + "size": 3073, "stargazers_count": 7, "watchers_count": 7, "language": "Groovy", @@ -26400,7 +26401,7 @@ } }, "network_count": 3, - "subscribers_count": 154, + "subscribers_count": 155, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -26564,9 +26565,9 @@ "url": "https://api.github.com/repos/nf-core/pixelator", "created_at": "2022-09-17T18:27:29Z", "updated_at": "2024-09-03T10:12:04Z", - "pushed_at": "2024-08-01T19:05:23Z", + "pushed_at": "2024-10-08T12:31:44Z", "homepage": "https://nf-co.re/pixelator", - "size": 4624, + "size": 4646, "stargazers_count": 8, "watchers_count": 8, "language": "Nextflow", @@ -26579,7 +26580,7 @@ "forks_count": 3, "archived": false, "disabled": false, - "open_issues_count": 0, + "open_issues_count": 1, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -26593,7 +26594,7 @@ ], "visibility": "public", "forks": 3, - "open_issues": 0, + "open_issues": 1, "watchers": 8, "default_branch": "master", "temp_clone_token": "", @@ -26681,7 +26682,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/pixelator", "contributors": [ { @@ -26710,7 +26711,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/1019628?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "511dd17fc4bf61e773584b879afde194f14fbdf2", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/pixelator/compare/511dd17fc4bf61e773584b879afde194f14fbdf2...511dd17fc4bf61e773584b879afde194f14fbdf2", @@ -26903,9 +26904,9 @@ "url": "https://api.github.com/repos/nf-core/proteinfold", "created_at": "2022-03-03T10:41:35Z", "updated_at": "2024-09-18T22:25:36Z", - "pushed_at": "2024-10-04T10:25:26Z", + "pushed_at": "2024-10-08T12:31:36Z", "homepage": "https://nf-co.re/proteinfold", - "size": 7103, + "size": 7125, "stargazers_count": 51, "watchers_count": 51, "language": "Nextflow", @@ -26918,7 +26919,7 @@ "forks_count": 36, "archived": false, "disabled": false, - "open_issues_count": 13, + "open_issues_count": 14, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -26931,7 +26932,7 @@ ], "visibility": "public", "forks": 36, - "open_issues": 13, + "open_issues": 14, "watchers": 51, "default_branch": "master", "temp_clone_token": "", @@ -26965,7 +26966,7 @@ } }, "network_count": 36, - "subscribers_count": 155, + "subscribers_count": 156, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -27024,7 +27025,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/proteinfold", "contributors": [ { @@ -27098,7 +27099,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/6259184?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "9bea0dc4ebb26358142afbcab3d7efd962d3a820", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/proteinfold/compare/9bea0dc4ebb26358142afbcab3d7efd962d3a820...9bea0dc4ebb26358142afbcab3d7efd962d3a820", @@ -27282,7 +27283,7 @@ } }, "network_count": 19, - "subscribers_count": 135, + "subscribers_count": 136, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -27994,9 +27995,9 @@ "url": "https://api.github.com/repos/nf-core/radseq", "created_at": "2022-11-11T04:10:08Z", "updated_at": "2024-09-03T10:14:41Z", - "pushed_at": "2024-05-09T11:42:48Z", + "pushed_at": "2024-10-08T12:31:42Z", "homepage": "https://nf-co.re/radseq", - "size": 2632, + "size": 2666, "stargazers_count": 6, "watchers_count": 6, "language": "Nextflow", @@ -28050,7 +28051,7 @@ } }, "network_count": 4, - "subscribers_count": 157, + "subscribers_count": 156, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -28247,7 +28248,7 @@ } }, "network_count": 3, - "subscribers_count": 169, + "subscribers_count": 170, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -28359,9 +28360,9 @@ "url": "https://api.github.com/repos/nf-core/raredisease", "created_at": "2021-06-21T09:40:29Z", "updated_at": "2024-09-18T12:29:08Z", - "pushed_at": "2024-10-08T07:45:07Z", + "pushed_at": "2024-10-08T12:32:53Z", "homepage": "https://nf-co.re/raredisease", - "size": 13496, + "size": 13514, "stargazers_count": 84, "watchers_count": 84, "language": "Nextflow", @@ -28374,7 +28375,7 @@ "forks_count": 34, "archived": false, "disabled": false, - "open_issues_count": 33, + "open_issues_count": 34, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -28390,7 +28391,7 @@ ], "visibility": "public", "forks": 34, - "open_issues": 33, + "open_issues": 34, "watchers": 84, "default_branch": "master", "temp_clone_token": "", @@ -28424,7 +28425,7 @@ } }, "network_count": 34, - "subscribers_count": 149, + "subscribers_count": 150, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -28518,7 +28519,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/raredisease", "contributors": [ { @@ -28642,7 +28643,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/15126788?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "fa61a657257a14a6433e3d751c577ab4c9d2eda4", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/raredisease/compare/fa61a657257a14a6433e3d751c577ab4c9d2eda4...fa61a657257a14a6433e3d751c577ab4c9d2eda4", @@ -29533,9 +29534,9 @@ "url": "https://api.github.com/repos/nf-core/readsimulator", "created_at": "2023-09-26T03:28:00Z", "updated_at": "2024-09-09T12:25:55Z", - "pushed_at": "2024-05-09T12:21:33Z", + "pushed_at": "2024-10-08T12:32:48Z", "homepage": "https://nf-co.re/readsimulator", - "size": 7899, + "size": 7921, "stargazers_count": 27, "watchers_count": 27, "language": "Nextflow", @@ -29830,7 +29831,7 @@ } }, "network_count": 4, - "subscribers_count": 163, + "subscribers_count": 164, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -29889,7 +29890,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/23131457?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "42b305199b903365b71e7a8554cfcc6a822da8a8", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/reportho/compare/42b305199b903365b71e7a8554cfcc6a822da8a8...42b305199b903365b71e7a8554cfcc6a822da8a8", @@ -29992,9 +29993,9 @@ "url": "https://api.github.com/repos/nf-core/riboseq", "created_at": "2023-10-18T00:45:36Z", "updated_at": "2024-09-03T10:12:02Z", - "pushed_at": "2024-08-05T14:45:11Z", + "pushed_at": "2024-10-08T12:32:49Z", "homepage": "https://nf-co.re/riboseq", - "size": 20422, + "size": 20451, "stargazers_count": 6, "watchers_count": 6, "language": "Nextflow", @@ -30007,14 +30008,14 @@ "forks_count": 4, "archived": false, "disabled": false, - "open_issues_count": 15, + "open_issues_count": 16, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 4, - "open_issues": 15, + "open_issues": 16, "watchers": 6, "default_branch": "master", "temp_clone_token": "", @@ -30112,7 +30113,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/riboseq", "contributors": [ { @@ -30364,9 +30365,9 @@ "url": "https://api.github.com/repos/nf-core/rnadnavar", "created_at": "2022-06-30T12:35:12Z", "updated_at": "2024-09-18T22:31:58Z", - "pushed_at": "2024-07-23T07:35:26Z", + "pushed_at": "2024-10-08T12:32:02Z", "homepage": "https://nf-co.re/rnadnavar", - "size": 4226, + "size": 4247, "stargazers_count": 5, "watchers_count": 5, "language": "Nextflow", @@ -30379,14 +30380,14 @@ "forks_count": 6, "archived": false, "disabled": false, - "open_issues_count": 4, + "open_issues_count": 5, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 6, - "open_issues": 4, + "open_issues": 5, "watchers": 5, "default_branch": "dev", "temp_clone_token": "", @@ -30420,7 +30421,7 @@ } }, "network_count": 6, - "subscribers_count": 150, + "subscribers_count": 151, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -30489,7 +30490,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/rnadnavar", "contributors": [ { @@ -30627,9 +30628,9 @@ "url": "https://api.github.com/repos/nf-core/rnafusion", "created_at": "2018-10-05T13:05:57Z", "updated_at": "2024-09-04T04:34:53Z", - "pushed_at": "2024-10-08T07:48:19Z", + "pushed_at": "2024-10-08T12:33:01Z", "homepage": "https://nf-co.re/rnafusion", - "size": 19589, + "size": 19607, "stargazers_count": 138, "watchers_count": 138, "language": "Nextflow", @@ -30642,7 +30643,7 @@ "forks_count": 93, "archived": false, "disabled": false, - "open_issues_count": 22, + "open_issues_count": 23, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -30655,7 +30656,7 @@ ], "visibility": "public", "forks": 93, - "open_issues": 22, + "open_issues": 23, "watchers": 138, "default_branch": "master", "temp_clone_token": "", @@ -30689,7 +30690,7 @@ } }, "network_count": 93, - "subscribers_count": 143, + "subscribers_count": 144, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -30743,7 +30744,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 3, + "open_pr_count": 4, "repository_url": "https://github.com/nf-core/rnafusion", "contributors": [ { @@ -31369,9 +31370,9 @@ "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", "updated_at": "2024-10-07T16:24:30Z", - "pushed_at": "2024-10-02T15:08:26Z", + "pushed_at": "2024-10-08T13:25:21Z", "homepage": "https://nf-co.re/rnaseq", - "size": 71873, + "size": 71964, "stargazers_count": 880, "watchers_count": 880, "language": "Nextflow", @@ -31381,10 +31382,10 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 699, + "forks_count": 700, "archived": false, "disabled": false, - "open_issues_count": 67, + "open_issues_count": 68, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -31393,8 +31394,8 @@ "rna-seq" ], "visibility": "public", - "forks": 699, - "open_issues": 67, + "forks": 700, + "open_issues": 68, "watchers": 880, "default_branch": "master", "temp_clone_token": "", @@ -31429,8 +31430,8 @@ "status": "disabled" } }, - "network_count": 699, - "subscribers_count": 150, + "network_count": 700, + "subscribers_count": 151, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -31918,7 +31919,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/12799326?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "33df0c05ef99d1d9af97d1d74681ab0452612abb", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/rnaseq/compare/33df0c05ef99d1d9af97d1d74681ab0452612abb...33df0c05ef99d1d9af97d1d74681ab0452612abb", @@ -33413,8 +33414,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-02T12:21:02Z", - "tag_sha": "00a0857b9292d15f65fa99fb853282367e0bfb19", + "published_at": "2024-10-08T13:25:21Z", + "tag_sha": "224655a5511af7e51b2b49a37770705cd9e6738e", "has_schema": true, "doc_files": [ "docs/output.md", @@ -33509,9 +33510,9 @@ "url": "https://api.github.com/repos/nf-core/rnasplice", "created_at": "2022-08-22T14:25:09Z", "updated_at": "2024-09-22T04:25:11Z", - "pushed_at": "2024-08-21T19:26:03Z", + "pushed_at": "2024-10-08T12:32:17Z", "homepage": "https://nf-co.re/rnasplice", - "size": 167320, + "size": 167342, "stargazers_count": 42, "watchers_count": 42, "language": "Nextflow", @@ -33570,7 +33571,7 @@ } }, "network_count": 24, - "subscribers_count": 144, + "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -33984,9 +33985,9 @@ "url": "https://api.github.com/repos/nf-core/rnavar", "created_at": "2021-05-12T07:25:10Z", "updated_at": "2024-10-01T02:55:47Z", - "pushed_at": "2024-08-28T10:35:25Z", + "pushed_at": "2024-10-08T12:31:58Z", "homepage": "https://nf-co.re/rnavar", - "size": 3930, + "size": 3952, "stargazers_count": 35, "watchers_count": 35, "language": "Nextflow", @@ -33999,7 +34000,7 @@ "forks_count": 32, "archived": false, "disabled": false, - "open_issues_count": 41, + "open_issues_count": 42, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -34012,7 +34013,7 @@ ], "visibility": "public", "forks": 32, - "open_issues": 41, + "open_issues": 42, "watchers": 35, "default_branch": "master", "temp_clone_token": "", @@ -34046,7 +34047,7 @@ } }, "network_count": 32, - "subscribers_count": 103, + "subscribers_count": 104, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -34135,7 +34136,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/rnavar", "contributors": [ { @@ -34351,7 +34352,7 @@ } }, "network_count": 3, - "subscribers_count": 155, + "subscribers_count": 156, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -34503,12 +34504,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/sarek", "created_at": "2019-04-30T15:43:00Z", - "updated_at": "2024-10-04T08:44:41Z", - "pushed_at": "2024-10-08T10:15:58Z", + "updated_at": "2024-10-08T13:25:03Z", + "pushed_at": "2024-10-08T15:35:33Z", "homepage": "https://nf-co.re/sarek", - "size": 92053, - "stargazers_count": 395, - "watchers_count": 395, + "size": 92073, + "stargazers_count": 396, + "watchers_count": 396, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -34519,7 +34520,7 @@ "forks_count": 403, "archived": false, "disabled": false, - "open_issues_count": 279, + "open_issues_count": 280, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -34538,8 +34539,8 @@ ], "visibility": "public", "forks": 403, - "open_issues": 279, - "watchers": 395, + "open_issues": 280, + "watchers": 396, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": true, @@ -34574,7 +34575,7 @@ } }, "network_count": 403, - "subscribers_count": 127, + "subscribers_count": 128, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -34917,7 +34918,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/14319935?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "5cc30494a6b8e7e53be64d308b582190ca7d2585", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/sarek/compare/5cc30494a6b8e7e53be64d308b582190ca7d2585...5cc30494a6b8e7e53be64d308b582190ca7d2585", @@ -37032,9 +37033,9 @@ "url": "https://api.github.com/repos/nf-core/scdownstream", "created_at": "2024-06-11T06:38:31Z", "updated_at": "2024-10-08T08:45:16Z", - "pushed_at": "2024-10-03T15:05:36Z", + "pushed_at": "2024-10-08T12:32:01Z", "homepage": "https://nf-co.re/scdownstream", - "size": 1854, + "size": 1924, "stargazers_count": 31, "watchers_count": 31, "language": "Nextflow", @@ -37047,7 +37048,7 @@ "forks_count": 7, "archived": false, "disabled": false, - "open_issues_count": 18, + "open_issues_count": 19, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -37061,7 +37062,7 @@ ], "visibility": "public", "forks": 7, - "open_issues": 18, + "open_issues": 19, "watchers": 31, "default_branch": "dev", "temp_clone_token": "", @@ -37095,7 +37096,7 @@ } }, "network_count": 7, - "subscribers_count": 173, + "subscribers_count": 174, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -37125,7 +37126,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": -1, "has_required_topics": false, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/scdownstream", "contributors": [ { @@ -37632,9 +37633,9 @@ "url": "https://api.github.com/repos/nf-core/scnanoseq", "created_at": "2022-04-08T15:41:14Z", "updated_at": "2024-10-08T01:43:12Z", - "pushed_at": "2024-10-07T17:36:29Z", + "pushed_at": "2024-10-08T12:33:38Z", "homepage": "https://nf-co.re/scnanoseq/", - "size": 23302, + "size": 23323, "stargazers_count": 15, "watchers_count": 15, "language": "Nextflow", @@ -37647,7 +37648,7 @@ "forks_count": 4, "archived": false, "disabled": false, - "open_issues_count": 0, + "open_issues_count": 2, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -37660,7 +37661,7 @@ ], "visibility": "public", "forks": 4, - "open_issues": 0, + "open_issues": 2, "watchers": 15, "default_branch": "master", "temp_clone_token": "", @@ -37694,7 +37695,7 @@ } }, "network_count": 4, - "subscribers_count": 16, + "subscribers_count": 17, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -37758,7 +37759,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/scnanoseq", "contributors": [ { @@ -37777,7 +37778,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/91611978?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "35da74af5daae60ade2920c84a48f833a4c3c2a1", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/scnanoseq/compare/35da74af5daae60ade2920c84a48f833a4c3c2a1...35da74af5daae60ade2920c84a48f833a4c3c2a1", @@ -37893,9 +37894,9 @@ "url": "https://api.github.com/repos/nf-core/scrnaseq", "created_at": "2019-04-08T13:12:00Z", "updated_at": "2024-10-01T06:38:16Z", - "pushed_at": "2024-10-07T07:21:39Z", + "pushed_at": "2024-10-08T12:32:07Z", "homepage": "https://nf-co.re/scrnaseq", - "size": 44054, + "size": 44075, "stargazers_count": 210, "watchers_count": 210, "language": "Nextflow", @@ -37908,7 +37909,7 @@ "forks_count": 167, "archived": false, "disabled": false, - "open_issues_count": 49, + "open_issues_count": 50, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -37925,7 +37926,7 @@ ], "visibility": "public", "forks": 167, - "open_issues": 49, + "open_issues": 50, "watchers": 210, "default_branch": "master", "temp_clone_token": "", @@ -37959,7 +37960,7 @@ } }, "network_count": 167, - "subscribers_count": 127, + "subscribers_count": 128, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -38103,7 +38104,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 3, + "open_pr_count": 4, "repository_url": "https://github.com/nf-core/scrnaseq", "contributors": [ { @@ -38262,7 +38263,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/58985504?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "4171377f40d629d43d4ca71654a7ea06e5619a09", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/scrnaseq/compare/4171377f40d629d43d4ca71654a7ea06e5619a09...4171377f40d629d43d4ca71654a7ea06e5619a09", @@ -38716,9 +38717,9 @@ "url": "https://api.github.com/repos/nf-core/seqinspector", "created_at": "2024-03-14T10:40:33Z", "updated_at": "2024-09-03T10:11:40Z", - "pushed_at": "2024-09-17T16:02:58Z", + "pushed_at": "2024-10-08T12:33:13Z", "homepage": "https://nf-co.re/seqinspector", - "size": 418, + "size": 423, "stargazers_count": 4, "watchers_count": 4, "language": "Nextflow", @@ -38731,7 +38732,7 @@ "forks_count": 14, "archived": false, "disabled": false, - "open_issues_count": 12, + "open_issues_count": 13, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -38741,7 +38742,7 @@ ], "visibility": "public", "forks": 14, - "open_issues": 12, + "open_issues": 13, "watchers": 4, "default_branch": "master", "temp_clone_token": "", @@ -38775,7 +38776,7 @@ } }, "network_count": 14, - "subscribers_count": 169, + "subscribers_count": 170, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -38844,7 +38845,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 3, + "open_pr_count": 4, "repository_url": "https://github.com/nf-core/seqinspector", "contributors": [ { @@ -39772,9 +39773,9 @@ "url": "https://api.github.com/repos/nf-core/smrnaseq", "created_at": "2018-07-11T14:56:59Z", "updated_at": "2024-10-02T13:44:02Z", - "pushed_at": "2024-10-08T11:31:45Z", + "pushed_at": "2024-10-08T15:00:28Z", "homepage": "https://nf-co.re/smrnaseq", - "size": 8828, + "size": 8850, "stargazers_count": 73, "watchers_count": 73, "language": "Nextflow", @@ -39831,7 +39832,7 @@ } }, "network_count": 124, - "subscribers_count": 140, + "subscribers_count": 141, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -39885,7 +39886,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/smrnaseq", "contributors": [ { @@ -40402,9 +40403,9 @@ "url": "https://api.github.com/repos/nf-core/spatialvi", "created_at": "2022-02-23T20:44:38Z", "updated_at": "2024-09-16T14:40:00Z", - "pushed_at": "2024-09-19T15:17:18Z", + "pushed_at": "2024-10-08T12:32:07Z", "homepage": "https://nf-co.re/spatialvi", - "size": 7213, + "size": 7187, "stargazers_count": 49, "watchers_count": 49, "language": "Nextflow", @@ -40417,7 +40418,7 @@ "forks_count": 18, "archived": false, "disabled": false, - "open_issues_count": 6, + "open_issues_count": 7, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -40436,7 +40437,7 @@ ], "visibility": "public", "forks": 18, - "open_issues": 6, + "open_issues": 7, "watchers": 49, "default_branch": "dev", "temp_clone_token": "", @@ -40470,7 +40471,7 @@ } }, "network_count": 18, - "subscribers_count": 152, + "subscribers_count": 153, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -40539,7 +40540,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/spatialvi", "contributors": [ { @@ -40618,9 +40619,9 @@ "url": "https://api.github.com/repos/nf-core/spinningjenny", "created_at": "2023-03-27T09:54:15Z", "updated_at": "2024-09-03T10:13:18Z", - "pushed_at": "2024-05-13T07:49:38Z", + "pushed_at": "2024-10-08T12:33:17Z", "homepage": "https://nf-co.re/spinningjenny", - "size": 2556, + "size": 2586, "stargazers_count": 2, "watchers_count": 2, "language": "Nextflow", @@ -40863,7 +40864,7 @@ } }, "network_count": 4, - "subscribers_count": 100, + "subscribers_count": 101, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -41011,9 +41012,9 @@ "url": "https://api.github.com/repos/nf-core/taxprofiler", "created_at": "2022-02-18T06:56:10Z", "updated_at": "2024-10-03T16:54:18Z", - "pushed_at": "2024-10-04T09:16:17Z", + "pushed_at": "2024-10-08T12:32:12Z", "homepage": "https://nf-co.re/taxprofiler", - "size": 14862, + "size": 14626, "stargazers_count": 127, "watchers_count": 127, "language": "Nextflow", @@ -41026,7 +41027,7 @@ "forks_count": 35, "archived": false, "disabled": false, - "open_issues_count": 41, + "open_issues_count": 42, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -41045,7 +41046,7 @@ ], "visibility": "public", "forks": 35, - "open_issues": 41, + "open_issues": 42, "watchers": 127, "default_branch": "master", "temp_clone_token": "", @@ -41079,7 +41080,7 @@ } }, "network_count": 35, - "subscribers_count": 144, + "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -41333,7 +41334,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/taxprofiler", "contributors": [ { @@ -41432,7 +41433,7 @@ "avatar_url": "https://avatars.githubusercontent.com/u/47026226?v=4" } ], - "released_after_tools": true, + "released_after_tools": false, "head_sha": "68938940f3c95f53f6c71c9742ab0d947ccba821", "last_release_is_head": true, "last_release_vs_default_compare_url": "https://github.com/nf-core/taxprofiler/compare/68938940f3c95f53f6c71c9742ab0d947ccba821...68938940f3c95f53f6c71c9742ab0d947ccba821", @@ -42308,9 +42309,9 @@ "url": "https://api.github.com/repos/nf-core/tbanalyzer", "created_at": "2024-05-06T15:00:51Z", "updated_at": "2024-09-09T12:48:45Z", - "pushed_at": "2024-05-22T09:06:39Z", + "pushed_at": "2024-10-08T12:32:29Z", "homepage": "https://nf-co.re/tbanalyzer", - "size": 305, + "size": 341, "stargazers_count": 5, "watchers_count": 5, "language": "Nextflow", @@ -42367,7 +42368,7 @@ } }, "network_count": 1, - "subscribers_count": 185, + "subscribers_count": 186, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -42458,9 +42459,9 @@ "url": "https://api.github.com/repos/nf-core/tfactivity", "created_at": "2024-03-03T07:02:10Z", "updated_at": "2024-09-03T10:10:20Z", - "pushed_at": "2024-09-20T12:04:53Z", + "pushed_at": "2024-10-08T12:32:27Z", "homepage": "https://nf-co.re/tfactivity", - "size": 7367, + "size": 7389, "stargazers_count": 9, "watchers_count": 9, "language": "Nextflow", @@ -42473,7 +42474,7 @@ "forks_count": 1, "archived": false, "disabled": false, - "open_issues_count": 3, + "open_issues_count": 4, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -42484,7 +42485,7 @@ ], "visibility": "public", "forks": 1, - "open_issues": 3, + "open_issues": 4, "watchers": 9, "default_branch": "dev", "temp_clone_token": "", @@ -42518,7 +42519,7 @@ } }, "network_count": 1, - "subscribers_count": 163, + "subscribers_count": 164, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -42592,7 +42593,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 1, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/tfactivity", "contributors": [ { @@ -42668,9 +42669,9 @@ "url": "https://api.github.com/repos/nf-core/troughgraph", "created_at": "2024-08-12T12:08:15Z", "updated_at": "2024-09-03T10:11:53Z", - "pushed_at": "2024-08-12T12:08:51Z", + "pushed_at": "2024-10-08T12:32:18Z", "homepage": null, - "size": 323, + "size": 344, "stargazers_count": 2, "watchers_count": 2, "language": "Nextflow", @@ -42683,14 +42684,14 @@ "forks_count": 0, "archived": false, "disabled": false, - "open_issues_count": 0, + "open_issues_count": 1, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 0, - "open_issues": 0, + "open_issues": 1, "watchers": 2, "default_branch": "dev", "temp_clone_token": "", @@ -42762,7 +42763,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": false, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/troughgraph", "contributors": [ { @@ -42820,9 +42821,9 @@ "url": "https://api.github.com/repos/nf-core/variantbenchmarking", "created_at": "2023-12-07T10:56:32Z", "updated_at": "2024-09-18T22:23:57Z", - "pushed_at": "2024-09-25T13:01:10Z", + "pushed_at": "2024-10-08T12:32:25Z", "homepage": "https://nf-co.re/variantbenchmarking", - "size": 3765, + "size": 3786, "stargazers_count": 10, "watchers_count": 10, "language": "Nextflow", @@ -42835,7 +42836,7 @@ "forks_count": 6, "archived": false, "disabled": false, - "open_issues_count": 13, + "open_issues_count": 14, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -42847,7 +42848,7 @@ ], "visibility": "public", "forks": 6, - "open_issues": 13, + "open_issues": 14, "watchers": 10, "default_branch": "dev", "temp_clone_token": "", @@ -42881,7 +42882,7 @@ } }, "network_count": 6, - "subscribers_count": 163, + "subscribers_count": 164, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -42945,7 +42946,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/variantbenchmarking", "contributors": [ { @@ -43041,9 +43042,9 @@ "url": "https://api.github.com/repos/nf-core/variantcatalogue", "created_at": "2022-12-24T02:26:49Z", "updated_at": "2024-09-03T10:14:22Z", - "pushed_at": "2024-05-09T12:20:28Z", + "pushed_at": "2024-10-08T12:32:27Z", "homepage": "https://nf-co.re/variantcatalogue", - "size": 192948, + "size": 192997, "stargazers_count": 8, "watchers_count": 8, "language": "Nextflow", @@ -43097,7 +43098,7 @@ } }, "network_count": 3, - "subscribers_count": 153, + "subscribers_count": 152, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -43310,7 +43311,7 @@ } }, "network_count": 12, - "subscribers_count": 183, + "subscribers_count": 184, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -43524,7 +43525,7 @@ } }, "network_count": 8, - "subscribers_count": 152, + "subscribers_count": 153, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -43720,9 +43721,9 @@ "url": "https://api.github.com/repos/nf-core/viralrecon", "created_at": "2020-03-30T11:14:12Z", "updated_at": "2024-09-28T13:18:21Z", - "pushed_at": "2024-08-27T08:02:15Z", + "pushed_at": "2024-10-08T12:33:29Z", "homepage": "https://nf-co.re/viralrecon", - "size": 10265, + "size": 10286, "stargazers_count": 118, "watchers_count": 118, "language": "Nextflow", @@ -43735,7 +43736,7 @@ "forks_count": 108, "archived": false, "disabled": false, - "open_issues_count": 34, + "open_issues_count": 35, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -43758,7 +43759,7 @@ ], "visibility": "public", "forks": 108, - "open_issues": 34, + "open_issues": 35, "watchers": 118, "default_branch": "master", "temp_clone_token": "", @@ -43792,7 +43793,7 @@ } }, "network_count": 108, - "subscribers_count": 98, + "subscribers_count": 99, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -43856,7 +43857,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 3, + "open_pr_count": 4, "repository_url": "https://github.com/nf-core/viralrecon", "contributors": [ {