diff --git a/public/components.json b/public/components.json index 3f616ab3bb..f0fc449ff1 100644 --- a/public/components.json +++ b/public/components.json @@ -7584,54 +7584,6 @@ "name": "rnafusion", "version": "3.0.2" }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, - { - "name": "rnafusion", - "version": "3.0.2" - }, { "name": "rnafusion", "version": "3.0.2" @@ -24699,102 +24651,6 @@ "name": "genomeassembler", "version": "dev" }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "pathogensurveillance", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, { "name": "pathogensurveillance", "version": "dev" @@ -75117,10 +74973,6 @@ "name": "chipseq", "version": "2.0.0" }, - { - "name": "circrna", - "version": "dev" - }, { "name": "hicar", "version": "1.0.0" @@ -104158,7 +104010,11 @@ } }, { - "*_bin.tar.gz": null + "*_bin.tar.gz": { + "type": "file", + "description": "Marker bins", + "pattern": "*_bin.tar.gz" + } } ] }, @@ -106301,54 +106157,6 @@ "name": "genomeassembler", "version": "dev" }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, - { - "name": "genomeassembler", - "version": "dev" - }, { "name": "genomeassembler", "version": "dev" @@ -110759,13 +110567,24 @@ { "outputs": [ { - "meta": {} + "meta": { + "type": "map", + "description": "Groovy Map containing sample information, e.g. `[ id:'sample1', single_end:false ]`" + } }, { - "*.fa": {} + "*.fa": { + "type": "file", + "description": "Collapsed reads in FASTA format.", + "pattern": "*.fa" + } }, { - "*.arf": {} + "*.arf": { + "type": "file", + "description": "Alignment Read Format (ARF) file containing the mapping of reads to the genome.", + "pattern": "*.arf" + } } ] }, diff --git a/sites/modules-subworkflows/astro.config.mjs b/sites/modules-subworkflows/astro.config.mjs index 9c61b72c26..dafa3ec396 100644 --- a/sites/modules-subworkflows/astro.config.mjs +++ b/sites/modules-subworkflows/astro.config.mjs @@ -2,7 +2,6 @@ import admonitionsPlugin from '../../bin/remark-admonitions'; import mermaid from '../../bin/remark-mermaid'; import { rehypeCheckboxParser } from '../../bin/rehype-checkbox-parser.ts'; import { rehypeHeadingNumbers } from '../../bin/rehype-heading-numbers.ts'; -import pipelines_json from './public/pipelines.json'; import mdx from '@astrojs/mdx'; import netlify from '@astrojs/netlify'; import partytown from '@astrojs/partytown'; @@ -27,19 +26,12 @@ import remarkDescription from 'astro-remark-description'; import markdownIntegration from '@astropub/md'; import icon from 'astro-icon'; -let latestPipelineReleases = {}; -pipelines_json.remote_workflows.map( - (pipeline) => (latestPipelineReleases[pipeline.name] = `/${pipeline.name}/${pipeline.releases[0].tag_name}/`), -); // https://astro.build/config export default defineConfig({ site: 'https://nf-co.re/', output: 'static', adapter: netlify(), prefetch: false, - redirects: { - ...latestPipelineReleases, - }, integrations: [ svelte(), icon({