diff --git a/.cache.tar.xz b/.cache.tar.xz index 1435eaafe7..a4ccea7d76 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 78a716207b..ca4a3c1985 100644 --- a/public/components.json +++ b/public/components.json @@ -3994,6 +3994,10 @@ "name": "rnafusion", "version": "3.0.1" }, + { + "name": "rnafusion", + "version": "3.0.1" + }, { "name": "rnafusion", "version": "3.0.1" @@ -37377,6 +37381,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -38798,6 +38806,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -43371,6 +43383,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -53236,7 +53252,9 @@ "homepage": "https://github.com/pha4ge/hAMRonization/", "documentation": "https://github.com/pha4ge/hAMRonization/", "tool_dev_url": "https://github.com/pha4ge/hAMRonization", - "licence": "['GNU Lesser General Public v3 (LGPL v3)']" + "licence": [ + "GNU Lesser General Public v3 (LGPL v3)" + ] } } ], @@ -53256,21 +53274,21 @@ }, { "format": { - "type": "value", + "type": "string", "description": "Type of report file to be produced", "pattern": "tsv|json" } }, { "software_version": { - "type": "value", + "type": "string", "description": "Version of AMRfinder used", "pattern": "[0-9].[0-9].[0-9]" } }, { "reference_db_version": { - "type": "value", + "type": "string", "description": "Database version of ncbi_AMRfinder used", "pattern": "[0-9]-[0-9]-[0-9].[0-9]" } @@ -53361,21 +53379,21 @@ }, { "format": { - "type": "value", + "type": "string", "description": "Type of report file to be produced", "pattern": "tsv|json" } }, { "software_version": { - "type": "value", + "type": "string", "description": "Version of DeepARG used", "pattern": "[0-9].[0-9].[0-9]" } }, { "reference_db_version": { - "type": "value", + "type": "integer", "description": "Database version of DeepARG used", "pattern": "[0-9]" } @@ -53446,7 +53464,9 @@ "homepage": "https://github.com/pha4ge/hAMRonization/", "documentation": "https://github.com/pha4ge/hAMRonization/", "tool_dev_url": "https://github.com/pha4ge/hAMRonization", - "licence": "['GNU Lesser General Public v3 (LGPL v3)']" + "licence": [ + "GNU Lesser General Public v3 (LGPL v3)" + ] } } ], @@ -53466,21 +53486,21 @@ }, { "format": { - "type": "value", + "type": "string", "description": "Type of report file to be produced", "pattern": "tsv|json" } }, { "software_version": { - "type": "value", + "type": "string", "description": "Version of fARGene used", "pattern": "[0-9].[0-9].[0-9]" } }, { "reference_db_version": { - "type": "value", + "type": "string", "description": "Database version of fARGene used", "pattern": "[0-9].[0-9].[0-9]" } @@ -53551,7 +53571,9 @@ "homepage": "https://github.com/pha4ge/hAMRonization/", "documentation": "https://github.com/pha4ge/hAMRonization/", "tool_dev_url": "https://github.com/pha4ge/hAMRonization", - "licence": "['GNU Lesser General Public v3 (LGPL v3)']" + "licence": [ + "GNU Lesser General Public v3 (LGPL v3)" + ] } } ], @@ -53571,21 +53593,21 @@ }, { "format": { - "type": "value", + "type": "string", "description": "Type of report file to be produced", "pattern": "tsv|json" } }, { "software_version": { - "type": "value", + "type": "string", "description": "Version of DeepARG used", "pattern": "[0-9].[0-9].[0-9]" } }, { "reference_db_version": { - "type": "value", + "type": "string", "description": "Database version of DeepARG used", "pattern": "[0-9].[0-9].[0-9]" } @@ -53669,7 +53691,7 @@ }, { "format": { - "type": "value", + "type": "string", "description": "Type of final combined report file to be produced", "pattern": "tsv|json|interactive" } @@ -109950,6 +109972,159 @@ ] } }, + { + "name": "tximeta_tximport", + "path": "modules/nf-core/tximeta/tximport/meta.yml", + "type": "module", + "meta": { + "name": "tximeta_tximport", + "description": "Import transcript-level abundances and estimated counts for gene-level\nanalysis packages\n", + "keywords": [ + "gene", + "kallisto", + "pseudoalignment", + "salmon", + "transcript" + ], + "tools": [ + { + "tximeta": { + "description": "Transcript Quantification Import with Automatic Metadata", + "homepage": "https://bioconductor.org/packages/release/bioc/html/tximeta.html", + "documentation": "https://bioconductor.org/packages/release/bioc/vignettes/tximeta/inst/doc/tximeta.html", + "tool_dev_url": "https://github.com/thelovelab/tximeta", + "doi": "10.1371/journal.pcbi.1007664", + "licence": [ + "GPL-2" + ] + } + } + ], + "input": [ + { + "meta": { + "type": "map", + "description": "Groovy Map containing information related to the experiment as a whole\ne.g. `[ id:'SRP123456' ]`\n" + } + }, + { + "quants": { + "type": "directory", + "description": "Paths to subdirectories corresponding to sample-wise runs of Salmon or Kallisto" + } + }, + { + "meta2": { + "type": "map", + "description": "Groovy Map containing reference information related to the species\nreference e.g. `[ id:'yeast' ]`\n" + } + }, + { + "tx2gene": { + "type": "file", + "description": "A transcript to gene mapping table such as those generated by custom/tx2gene", + "pattern": "*.{csv,tsv}" + } + }, + { + "meta3": { + "type": "map", + "description": "Groovy Map containing information related to the experiment as a whole\ne.g. `[ id:'SRP123456' ]`\n" + } + }, + { + "coldata": { + "type": "file", + "description": "Optional 'coldata' file equivalent to a sample sheet where the first\ncolumn corresponds to the sample names (directory names in the input\nsalmon/ kallisto results)\n", + "pattern": "*.{csv,tsv}" + } + }, + { + "quant_type": { + "type": "string", + "description": "Quantification type, 'kallisto' or 'salmon'" + } + } + ], + "output": [ + { + "meta": { + "type": "map", + "description": "Groovy Map containing information related to the experiment as a whole\ne.g. `[ id:'SRP123456' ]`\n" + } + }, + { + "tpm_gene": { + "type": "file", + "description": "Abundance (TPM) values derived from tximport output after\nsummarizeToGene(), without a 'countsFromAbundance' specification\n", + "pattern": "*gene_tpm.tsv" + } + }, + { + "counts_gene": { + "type": "file", + "description": "Count values derived from tximport output after\nsummarizeToGene(), without a 'countsFromAbundance' specification\n", + "pattern": "*gene_counts.tsv" + } + }, + { + "counts_gene_length_scaled": { + "type": "file", + "description": "Count values derived from tximport output after summarizeToGene(), with\na 'countsFromAbundance' specification of 'lengthScaledTPM'\n", + "pattern": "*gene_counts_length_scaled.tsv" + } + }, + { + "counts_gene_scaled": { + "type": "file", + "description": "Count values derived from tximport output after summarizeToGene(), with\na 'countsFromAbundance' specification of 'scaledTPM'\n", + "pattern": "*gene_counts_scaled.tsv" + } + }, + { + "gene_lengths": { + "type": "file", + "description": "Length values derived from tximport output after summarizeToGene(),\nwithout a 'countsFromAbundance' specification\n", + "pattern": "*gene_lengths.tsv" + } + }, + { + "tpm_transcript": { + "type": "file", + "description": "Abundance (TPM) values derived from tximport output without\nsummarizeToGene(), without a 'countsFromAbundance' specification\n", + "pattern": "*transcript_tpm.tsv" + } + }, + { + "counts_transcript": { + "type": "file", + "description": "Count values derived from tximport output without\nsummarizeToGene(), without a 'countsFromAbundance' specification\n", + "pattern": "*transcript_counts.tsv" + } + }, + { + "transcript_lengths": { + "type": "file", + "description": "Length values derived from tximport output without summarizeToGene(),\nwithout a 'countsFromAbundance' specification\n", + "pattern": "*gene_lengths.tsv" + } + }, + { + "versions": { + "type": "file", + "description": "File containing software versions", + "pattern": "versions.yml" + } + } + ], + "authors": [ + "@pinin4fjords" + ], + "maintainers": [ + "@pinin4fjords" + ] + } + }, { "name": "ucsc_bedclip", "path": "modules/nf-core/ucsc/bedclip/meta.yml", @@ -122183,6 +122358,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" @@ -123020,6 +123199,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" @@ -123890,6 +124073,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" diff --git a/public/pipelines.json b/public/pipelines.json index b11a93a2b7..6114635ab0 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -11,9 +11,9 @@ "url": "https://api.github.com/repos/nf-core/airrflow", "created_at": "2018-12-04T11:39:05Z", "updated_at": "2024-01-25T05:20:30Z", - "pushed_at": "2024-02-08T03:18:09Z", + "pushed_at": "2024-02-08T14:54:25Z", "homepage": "https://nf-co.re/airrflow", - "size": 6554, + "size": 6472, "stargazers_count": 40, "watchers_count": 40, "language": "Nextflow", @@ -308,12 +308,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/ampliseq", "created_at": "2018-09-26T15:24:54Z", - "updated_at": "2024-02-01T22:50:31Z", + "updated_at": "2024-02-08T15:41:50Z", "pushed_at": "2024-02-08T12:57:16Z", "homepage": "https://nf-co.re/ampliseq", "size": 13707, - "stargazers_count": 146, - "watchers_count": 146, + "stargazers_count": 147, + "watchers_count": 147, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -348,7 +348,7 @@ "visibility": "public", "forks": 92, "open_issues": 19, - "watchers": 146, + "watchers": 147, "default_branch": "master", "custom_properties": {}, "network_count": 92, @@ -2809,12 +2809,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/circrna", "created_at": "2021-02-10T14:28:49Z", - "updated_at": "2024-02-08T09:03:28Z", + "updated_at": "2024-02-08T20:55:12Z", "pushed_at": "2024-02-03T18:29:19Z", "homepage": "https://nf-co.re/circrna", "size": 64719, - "stargazers_count": 34, - "watchers_count": 34, + "stargazers_count": 35, + "watchers_count": 35, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -2843,7 +2843,7 @@ "visibility": "public", "forks": 16, "open_issues": 10, - "watchers": 34, + "watchers": 35, "default_branch": "dev", "custom_properties": {}, "network_count": 16, @@ -5647,9 +5647,9 @@ "url": "https://api.github.com/repos/nf-core/differentialabundance", "created_at": "2022-10-12T08:49:25Z", "updated_at": "2024-02-07T09:34:37Z", - "pushed_at": "2024-02-08T08:59:01Z", + "pushed_at": "2024-02-08T14:12:03Z", "homepage": "https://nf-co.re/differentialabundance", - "size": 7889, + "size": 7895, "stargazers_count": 38, "watchers_count": 38, "language": "Nextflow", @@ -5662,7 +5662,7 @@ "forks_count": 19, "archived": false, "disabled": false, - "open_issues_count": 33, + "open_issues_count": 32, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -5680,13 +5680,13 @@ ], "visibility": "public", "forks": 19, - "open_issues": 33, + "open_issues": 32, "watchers": 38, "default_branch": "master", "custom_properties": {}, "network_count": 19, "subscribers_count": 128, - "open_pr_count": 5, + "open_pr_count": 4, "contributors": [ { "name": "WackerO", @@ -5989,8 +5989,8 @@ }, { "tag_name": "dev", - "published_at": "2024-02-02T10:46:45Z", - "tag_sha": "3c21229a5ec095e8c094711e8ba527cabccac4a0", + "published_at": "2024-02-08T14:12:02Z", + "tag_sha": "5421e4e21c0570825f734b4789f5870c9b5fa4dd", "has_schema": true, "doc_files": [ "docs/output.md", @@ -6139,9 +6139,9 @@ "url": "https://api.github.com/repos/nf-core/eager", "created_at": "2018-06-03T15:52:24Z", "updated_at": "2024-01-29T11:17:56Z", - "pushed_at": "2024-02-07T16:05:34Z", + "pushed_at": "2024-02-08T14:07:45Z", "homepage": "https://nf-co.re/eager", - "size": 66328, + "size": 66330, "stargazers_count": 117, "watchers_count": 117, "language": "Nextflow", @@ -6154,7 +6154,7 @@ "forks_count": 72, "archived": false, "disabled": false, - "open_issues_count": 63, + "open_issues_count": 62, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -6169,13 +6169,13 @@ ], "visibility": "public", "forks": 72, - "open_issues": 63, + "open_issues": 62, "watchers": 117, "default_branch": "master", "custom_properties": {}, "network_count": 72, "subscribers_count": 134, - "open_pr_count": 8, + "open_pr_count": 7, "contributors": [ { "name": "jfy133", @@ -6561,8 +6561,8 @@ }, { "tag_name": "dev", - "published_at": "2024-02-02T12:46:43Z", - "tag_sha": "63bf3e7d03a35c47d83873a45eb5d0cbc82218d4", + "published_at": "2024-02-08T14:06:56Z", + "tag_sha": "2a10626e4e30d473c06fd2779b3051c61449c353", "has_schema": true, "doc_files": [ "docs/output.md", @@ -7383,9 +7383,9 @@ "url": "https://api.github.com/repos/nf-core/funcscan", "created_at": "2021-12-13T10:35:54Z", "updated_at": "2024-01-25T05:18:28Z", - "pushed_at": "2024-02-08T14:00:32Z", + "pushed_at": "2024-02-08T14:47:39Z", "homepage": "https://nf-co.re/funcscan", - "size": 12596, + "size": 12600, "stargazers_count": 49, "watchers_count": 49, "language": "Nextflow", @@ -7398,7 +7398,7 @@ "forks_count": 14, "archived": false, "disabled": false, - "open_issues_count": 24, + "open_issues_count": 23, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -7421,7 +7421,7 @@ ], "visibility": "public", "forks": 14, - "open_issues": 24, + "open_issues": 23, "watchers": 49, "default_branch": "master", "custom_properties": {}, @@ -10147,7 +10147,7 @@ "url": "https://api.github.com/repos/nf-core/mag", "created_at": "2018-05-22T06:06:58Z", "updated_at": "2024-02-08T08:55:53Z", - "pushed_at": "2024-02-05T23:42:20Z", + "pushed_at": "2024-02-09T00:00:47Z", "homepage": "https://nf-co.re/mag", "size": 19477, "stargazers_count": 170, @@ -10162,7 +10162,7 @@ "forks_count": 94, "archived": false, "disabled": false, - "open_issues_count": 47, + "open_issues_count": 48, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -10178,7 +10178,7 @@ ], "visibility": "public", "forks": 94, - "open_issues": 47, + "open_issues": 48, "watchers": 170, "default_branch": "master", "custom_properties": {}, @@ -11499,9 +11499,9 @@ "url": "https://api.github.com/repos/nf-core/metatdenovo", "created_at": "2021-10-19T18:58:24Z", "updated_at": "2024-02-08T05:52:29Z", - "pushed_at": "2024-02-08T13:45:25Z", + "pushed_at": "2024-02-08T15:03:57Z", "homepage": "https://nf-co.re/metatdenovo", - "size": 13668, + "size": 13714, "stargazers_count": 5, "watchers_count": 5, "language": "Nextflow", @@ -11514,24 +11514,24 @@ "forks_count": 8, "archived": false, "disabled": false, - "open_issues_count": 8, + "open_issues_count": 7, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 8, - "open_issues": 8, + "open_issues": 7, "watchers": 5, "default_branch": "dev", "custom_properties": {}, "network_count": 8, "subscribers_count": 129, - "open_pr_count": 2, + "open_pr_count": 1, "contributors": [ { "name": "danilodileo", - "count": 320, + "count": 325, "avatar_url": "https://avatars.githubusercontent.com/u/78909156?v=4" }, { @@ -11553,8 +11553,8 @@ "releases": [ { "tag_name": "dev", - "published_at": "2024-02-08T12:35:08Z", - "tag_sha": "f3c9479cca76a00092d3a695f13521c7d3ae86ca", + "published_at": "2024-02-08T15:03:53Z", + "tag_sha": "88cf82c28a7119a640c8baf3cb79b7a06ca66603", "has_schema": true, "doc_files": [ "docs/output.md", @@ -14363,7 +14363,7 @@ "url": "https://api.github.com/repos/nf-core/phageannotator", "created_at": "2023-07-14T20:36:38Z", "updated_at": "2024-01-25T05:42:41Z", - "pushed_at": "2024-02-06T20:02:11Z", + "pushed_at": "2024-02-08T23:55:07Z", "homepage": "https://nf-co.re/phageannotator", "size": 4787, "stargazers_count": 7, @@ -14378,20 +14378,20 @@ "forks_count": 3, "archived": false, "disabled": false, - "open_issues_count": 47, + "open_issues_count": 48, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 3, - "open_issues": 47, + "open_issues": 48, "watchers": 7, "default_branch": "dev", "custom_properties": {}, "network_count": 3, "subscribers_count": 135, - "open_pr_count": 0, + "open_pr_count": 1, "contributors": [ { "name": "CarsonJM", @@ -14687,7 +14687,7 @@ "url": "https://api.github.com/repos/nf-core/pixelator", "created_at": "2022-09-17T18:27:29Z", "updated_at": "2023-11-27T08:19:46Z", - "pushed_at": "2024-01-29T15:12:27Z", + "pushed_at": "2024-02-08T15:26:14Z", "homepage": "https://nf-co.re/pixelator", "size": 3960, "stargazers_count": 4, @@ -15403,9 +15403,9 @@ "url": "https://api.github.com/repos/nf-core/raredisease", "created_at": "2021-06-21T09:40:29Z", "updated_at": "2024-02-07T11:50:30Z", - "pushed_at": "2024-02-07T14:23:54Z", + "pushed_at": "2024-02-08T14:19:58Z", "homepage": "https://nf-co.re/raredisease", - "size": 8833, + "size": 8823, "stargazers_count": 65, "watchers_count": 65, "language": "Nextflow", @@ -15418,7 +15418,7 @@ "forks_count": 30, "archived": false, "disabled": false, - "open_issues_count": 25, + "open_issues_count": 23, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -15434,13 +15434,13 @@ ], "visibility": "public", "forks": 30, - "open_issues": 25, + "open_issues": 23, "watchers": 65, "default_branch": "master", "custom_properties": {}, "network_count": 30, "subscribers_count": 129, - "open_pr_count": 1, + "open_pr_count": 0, "contributors": [ { "name": "ramprasadn", @@ -15815,8 +15815,8 @@ }, { "tag_name": "dev", - "published_at": "2024-02-07T08:49:31Z", - "tag_sha": "e8ac0756b9c1d7eaa7ea4b2d59d065490d1abe87", + "published_at": "2024-02-08T14:19:58Z", + "tag_sha": "c2237fee3deec1b6bb5425117aeae84c78254cd6", "has_schema": true, "doc_files": [ "docs/output.md", @@ -15894,6 +15894,7 @@ "picard_sortvcf", "qualimap_bamqc", "rhocall_annotate", + "rhocall_viz", "rtgtools_format", "rtgtools_vcfeval", "samtools_faidx", @@ -16910,12 +16911,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", - "updated_at": "2024-02-07T04:08:37Z", - "pushed_at": "2024-02-08T12:09:51Z", + "updated_at": "2024-02-08T17:24:37Z", + "pushed_at": "2024-02-08T15:30:51Z", "homepage": "https://nf-co.re/rnaseq", - "size": 66520, - "stargazers_count": 728, - "watchers_count": 728, + "size": 66532, + "stargazers_count": 729, + "watchers_count": 729, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -16937,7 +16938,7 @@ "visibility": "public", "forks": 634, "open_issues": 94, - "watchers": 728, + "watchers": 729, "default_branch": "master", "custom_properties": { "slack": "https://nfcore.slack.com/archives/CE8SSJV3N" @@ -18914,7 +18915,7 @@ "url": "https://api.github.com/repos/nf-core/rnavar", "created_at": "2021-05-12T07:25:10Z", "updated_at": "2024-02-07T09:28:55Z", - "pushed_at": "2024-02-02T08:17:09Z", + "pushed_at": "2024-02-08T16:01:02Z", "homepage": "https://nf-co.re/rnavar", "size": 3742, "stargazers_count": 24, @@ -18929,7 +18930,7 @@ "forks_count": 25, "archived": false, "disabled": false, - "open_issues_count": 40, + "open_issues_count": 42, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -18942,13 +18943,13 @@ ], "visibility": "public", "forks": 25, - "open_issues": 40, + "open_issues": 42, "watchers": 24, "default_branch": "master", "custom_properties": {}, "network_count": 25, "subscribers_count": 79, - "open_pr_count": 2, + "open_pr_count": 3, "contributors": [ { "name": "praveenraj2018", @@ -19197,7 +19198,7 @@ "forks_count": 348, "archived": false, "disabled": false, - "open_issues_count": 187, + "open_issues_count": 188, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -19216,7 +19217,7 @@ ], "visibility": "public", "forks": 348, - "open_issues": 187, + "open_issues": 188, "watchers": 309, "default_branch": "master", "custom_properties": { @@ -21367,10 +21368,10 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 115, + "forks_count": 116, "archived": false, "disabled": false, - "open_issues_count": 40, + "open_issues_count": 42, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -21386,12 +21387,12 @@ "star-solo" ], "visibility": "public", - "forks": 115, - "open_issues": 40, + "forks": 116, + "open_issues": 42, "watchers": 123, "default_branch": "master", "custom_properties": {}, - "network_count": 115, + "network_count": 116, "subscribers_count": 107, "open_pr_count": 7, "contributors": [ @@ -22443,7 +22444,7 @@ "url": "https://api.github.com/repos/nf-core/smrnaseq", "created_at": "2018-07-11T14:56:59Z", "updated_at": "2024-02-07T08:43:11Z", - "pushed_at": "2024-02-06T16:28:14Z", + "pushed_at": "2024-02-08T16:27:30Z", "homepage": "https://nf-co.re/smrnaseq", "size": 8095, "stargazers_count": 64, @@ -22458,7 +22459,7 @@ "forks_count": 110, "archived": false, "disabled": false, - "open_issues_count": 24, + "open_issues_count": 25, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -22468,13 +22469,13 @@ ], "visibility": "public", "forks": 110, - "open_issues": 24, + "open_issues": 25, "watchers": 64, "default_branch": "master", "custom_properties": {}, "network_count": 110, "subscribers_count": 123, - "open_pr_count": 2, + "open_pr_count": 3, "contributors": [ { "name": "apeltzer", @@ -23121,9 +23122,9 @@ "url": "https://api.github.com/repos/nf-core/taxprofiler", "created_at": "2022-02-18T06:56:10Z", "updated_at": "2024-02-08T08:57:54Z", - "pushed_at": "2024-02-08T13:43:33Z", + "pushed_at": "2024-02-08T16:09:33Z", "homepage": "https://nf-co.re/taxprofiler", - "size": 11443, + "size": 11491, "stargazers_count": 81, "watchers_count": 81, "language": "Nextflow",