diff --git a/.cache.tar.xz b/.cache.tar.xz index a4630d681d..62e5d20c12 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index e779ed9720..3f616ab3bb 100644 --- a/public/components.json +++ b/public/components.json @@ -7628,6 +7628,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -24783,6 +24787,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -106333,6 +106345,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" diff --git a/public/pipelines.json b/public/pipelines.json index f649e6ae67..6eb4fb19b8 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -4468,9 +4468,9 @@ "url": "https://api.github.com/repos/nf-core/circrna", "created_at": "2021-02-10T14:28:49Z", "updated_at": "2024-09-26T13:31:31Z", - "pushed_at": "2024-09-29T10:31:22Z", + "pushed_at": "2024-09-29T17:50:41Z", "homepage": "https://nf-co.re/circrna", - "size": 73528, + "size": 73530, "stargazers_count": 44, "watchers_count": 44, "language": "Nextflow", @@ -20535,12 +20535,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/methylseq", "created_at": "2018-03-12T15:46:42Z", - "updated_at": "2024-09-21T13:49:18Z", - "pushed_at": "2024-09-27T13:03:09Z", + "updated_at": "2024-09-29T15:26:37Z", + "pushed_at": "2024-09-29T14:29:20Z", "homepage": "https://nf-co.re/methylseq", - "size": 21194, - "stargazers_count": 137, - "watchers_count": 137, + "size": 21198, + "stargazers_count": 138, + "watchers_count": 138, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -20568,7 +20568,7 @@ "visibility": "public", "forks": 142, "open_issues": 44, - "watchers": 137, + "watchers": 138, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -21150,8 +21150,8 @@ }, { "tag_name": "dev", - "published_at": "2024-09-27T13:03:01Z", - "tag_sha": "0f2dad7cea115e5c616999e8675472114ff1ee78", + "published_at": "2024-09-29T14:29:13Z", + "tag_sha": "cee7d7aed301ba9e919e1ebf0c75891a8912231d", "has_schema": true, "doc_files": [ "docs/output.md", @@ -23996,9 +23996,9 @@ "url": "https://api.github.com/repos/nf-core/oncoanalyser", "created_at": "2022-12-22T05:01:49Z", "updated_at": "2024-09-15T18:34:09Z", - "pushed_at": "2024-09-26T15:23:35Z", + "pushed_at": "2024-09-30T00:16:11Z", "homepage": "https://nf-co.re/oncoanalyser", - "size": 4909, + "size": 4917, "stargazers_count": 40, "watchers_count": 40, "language": "Nextflow", @@ -30959,12 +30959,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", - "updated_at": "2024-09-24T01:36:20Z", + "updated_at": "2024-09-30T01:09:22Z", "pushed_at": "2024-09-20T15:52:33Z", "homepage": "https://nf-co.re/rnaseq", "size": 71422, - "stargazers_count": 873, - "watchers_count": 873, + "stargazers_count": 874, + "watchers_count": 874, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -30986,7 +30986,7 @@ "visibility": "public", "forks": 697, "open_issues": 64, - "watchers": 873, + "watchers": 874, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -33017,7 +33017,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 23, + "forks_count": 24, "archived": false, "disabled": false, "open_issues_count": 11, @@ -33031,7 +33031,7 @@ "splicing" ], "visibility": "public", - "forks": 23, + "forks": 24, "open_issues": 11, "watchers": 42, "default_branch": "master", @@ -33065,7 +33065,7 @@ "status": "disabled" } }, - "network_count": 23, + "network_count": 24, "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -40462,12 +40462,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/taxprofiler", "created_at": "2022-02-18T06:56:10Z", - "updated_at": "2024-09-23T04:39:07Z", + "updated_at": "2024-09-30T00:31:49Z", "pushed_at": "2024-09-27T09:02:05Z", "homepage": "https://nf-co.re/taxprofiler", "size": 14721, - "stargazers_count": 121, - "watchers_count": 121, + "stargazers_count": 124, + "watchers_count": 124, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -40475,7 +40475,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 34, + "forks_count": 35, "archived": false, "disabled": false, "open_issues_count": 44, @@ -40496,9 +40496,9 @@ "taxonomic-profiling" ], "visibility": "public", - "forks": 34, + "forks": 35, "open_issues": 44, - "watchers": 121, + "watchers": 124, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -40530,7 +40530,7 @@ "status": "disabled" } }, - "network_count": 34, + "network_count": 35, "subscribers_count": 145, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -42839,7 +42839,7 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/viralintegration", "created_at": "2022-04-01T19:30:55Z", - "updated_at": "2024-09-28T13:27:13Z", + "updated_at": "2024-09-30T01:27:00Z", "pushed_at": "2024-05-09T17:18:21Z", "homepage": "https://nf-co.re/viralintegration", "size": 3531,