diff --git a/.cache.tar.xz b/.cache.tar.xz index a819cb0546..dfb2454619 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 5596ca5ef5..411251c64e 100644 --- a/public/components.json +++ b/public/components.json @@ -4006,6 +4006,10 @@ "name": "rnafusion", "version": "3.0.1" }, + { + "name": "rnafusion", + "version": "3.0.1" + }, { "name": "rnafusion", "version": "3.0.1" @@ -15330,7 +15334,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -16602,7 +16606,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -24311,7 +24315,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -32589,7 +32593,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -37401,6 +37405,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -38834,6 +38842,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -43419,6 +43431,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -69422,7 +69438,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "crisprseq", @@ -72324,10 +72340,6 @@ "name": "callingcards", "version": "dev" }, - { - "name": "circdna", - "version": "1.0.4" - }, { "name": "circrna", "version": "dev" @@ -81981,7 +81993,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "cutandrun", @@ -92382,7 +92394,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "createpanelrefs", @@ -92836,7 +92848,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -93078,7 +93090,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -93347,7 +93359,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -93965,7 +93977,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -94155,7 +94167,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -94384,7 +94396,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -109656,7 +109668,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -117304,7 +117316,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "rnadnavar", @@ -118192,7 +118204,7 @@ }, { "name": "circdna", - "version": "1.0.4" + "version": "1.1.0" }, { "name": "circrna", @@ -122605,6 +122617,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" @@ -123454,6 +123470,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" @@ -124336,6 +124356,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" diff --git a/public/pipelines.json b/public/pipelines.json index ea8ed2d8f5..aa82a12f70 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -324,7 +324,7 @@ "forks_count": 92, "archived": false, "disabled": false, - "open_issues_count": 19, + "open_issues_count": 18, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -347,7 +347,7 @@ ], "visibility": "public", "forks": 92, - "open_issues": 19, + "open_issues": 18, "watchers": 147, "default_branch": "master", "custom_properties": {}, @@ -2489,7 +2489,7 @@ "url": "https://api.github.com/repos/nf-core/circdna", "created_at": "2021-11-02T09:45:33Z", "updated_at": "2024-02-07T09:32:00Z", - "pushed_at": "2024-02-08T11:32:30Z", + "pushed_at": "2024-02-10T09:02:00Z", "homepage": "https://nf-co.re/circdna", "size": 192865, "stargazers_count": 25, @@ -2504,7 +2504,7 @@ "forks_count": 12, "archived": false, "disabled": false, - "open_issues_count": 6, + "open_issues_count": 4, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -2521,17 +2521,17 @@ ], "visibility": "public", "forks": 12, - "open_issues": 6, + "open_issues": 4, "watchers": 25, "default_branch": "master", "custom_properties": {}, "network_count": 12, "subscribers_count": 127, - "open_pr_count": 2, + "open_pr_count": 0, "contributors": [ { "name": "DSchreyer", - "count": 636, + "count": 718, "avatar_url": "https://avatars.githubusercontent.com/u/44201984?v=4" }, { @@ -2546,6 +2546,38 @@ } ], "releases": [ + { + "tag_name": "1.1.0", + "published_at": "2024-02-10T09:02:00Z", + "tag_sha": "8e0e14c84f90c94d975c2bac6bde8e5a1d5bc8ab", + "has_schema": true, + "doc_files": [ + "docs/output.md", + "docs/usage.md" + ], + "components": { + "modules": [ + "bwa_index", + "cat_fastq", + "custom_dumpsoftwareversions", + "fastqc", + "minimap2_align", + "picard_markduplicates", + "samtools_faidx", + "samtools_flagstat", + "samtools_idxstats", + "samtools_index", + "samtools_sort", + "samtools_stats", + "samtools_view", + "trimgalore" + ], + "subworkflows": [ + "bam_markduplicates_picard", + "bam_stats_samtools" + ] + } + }, { "tag_name": "1.0.4", "published_at": "2023-06-27T08:31:03Z", @@ -6996,12 +7028,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/fetchngs", "created_at": "2021-06-03T09:26:41Z", - "updated_at": "2024-02-03T02:53:35Z", + "updated_at": "2024-02-10T14:00:29Z", "pushed_at": "2024-02-06T15:43:03Z", "homepage": "https://nf-co.re/fetchngs", "size": 3545, - "stargazers_count": 98, - "watchers_count": 98, + "stargazers_count": 99, + "watchers_count": 99, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -7028,7 +7060,7 @@ "visibility": "public", "forks": 53, "open_issues": 16, - "watchers": 98, + "watchers": 99, "default_branch": "master", "custom_properties": {}, "network_count": 53, @@ -8407,12 +8439,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/hic", "created_at": "2019-04-09T14:29:19Z", - "updated_at": "2024-01-31T03:30:11Z", + "updated_at": "2024-02-10T09:19:45Z", "pushed_at": "2024-01-29T14:52:06Z", "homepage": "https://nf-co.re/hic", "size": 3221, - "stargazers_count": 67, - "watchers_count": 67, + "stargazers_count": 68, + "watchers_count": 68, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -8420,7 +8452,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 49, + "forks_count": 50, "archived": false, "disabled": false, "open_issues_count": 31, @@ -8432,12 +8464,12 @@ "hi-c" ], "visibility": "public", - "forks": 49, + "forks": 50, "open_issues": 31, - "watchers": 67, + "watchers": 68, "default_branch": "master", "custom_properties": {}, - "network_count": 49, + "network_count": 50, "subscribers_count": 112, "open_pr_count": 3, "contributors": [ @@ -11606,9 +11638,9 @@ "url": "https://api.github.com/repos/nf-core/methylseq", "created_at": "2018-03-12T15:46:42Z", "updated_at": "2024-02-06T14:57:25Z", - "pushed_at": "2024-01-29T15:54:16Z", + "pushed_at": "2024-02-10T13:43:15Z", "homepage": "https://nf-co.re/methylseq", - "size": 20809, + "size": 20823, "stargazers_count": 125, "watchers_count": 125, "language": "Nextflow", @@ -13302,9 +13334,9 @@ "url": "https://api.github.com/repos/nf-core/nascent", "created_at": "2018-11-15T15:46:09Z", "updated_at": "2024-02-07T09:34:25Z", - "pushed_at": "2024-02-01T03:25:39Z", + "pushed_at": "2024-02-10T13:55:02Z", "homepage": "https://nf-co.re/nascent", - "size": 8098, + "size": 8090, "stargazers_count": 12, "watchers_count": 12, "language": "Nextflow", @@ -13317,7 +13349,7 @@ "forks_count": 8, "archived": false, "disabled": false, - "open_issues_count": 36, + "open_issues_count": 37, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -13331,13 +13363,13 @@ ], "visibility": "public", "forks": 8, - "open_issues": 36, + "open_issues": 37, "watchers": 12, "default_branch": "master", "custom_properties": {}, "network_count": 8, "subscribers_count": 129, - "open_pr_count": 3, + "open_pr_count": 4, "contributors": [ { "name": "edmundmiller",