diff --git a/.cache.tar.xz b/.cache.tar.xz index 38ce1bd52d..166a5f7750 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 699a98bf07..d05975b3ac 100644 --- a/public/components.json +++ b/public/components.json @@ -8445,6 +8445,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -27401,6 +27405,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -107088,6 +107100,22 @@ "name": "pathogensurveillance", "version": "dev" }, + { + "name": "phyloplace", + "version": "1.0.0" + }, + { + "name": "ampliseq", + "version": "2.12.0" + }, + { + "name": "multiplesequencealign", + "version": "1.0.0" + }, + { + "name": "pathogensurveillance", + "version": "dev" + }, { "name": "phyloplace", "version": "1.0.0" @@ -113282,6 +113310,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" @@ -132162,6 +132194,10 @@ "name": "viralrecon", "version": "2.6.0" }, + { + "name": "viralrecon", + "version": "2.6.0" + }, { "name": "viralrecon", "version": "2.6.0" @@ -206145,6 +206181,10 @@ "name": "phageannotator", "version": "dev" }, + { + "name": "phageannotator", + "version": "dev" + }, { "name": "phageannotator", "version": "dev" @@ -209719,6 +209759,10 @@ "name": "riboseq", "version": "1.0.1" }, + { + "name": "riboseq", + "version": "1.0.1" + }, { "name": "riboseq", "version": "1.0.1" diff --git a/public/pipelines.json b/public/pipelines.json index f829140fef..453b723cf8 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -5218,7 +5218,7 @@ "url": "https://api.github.com/repos/nf-core/coproid", "created_at": "2019-04-23T15:38:41Z", "updated_at": "2024-09-03T10:14:56Z", - "pushed_at": "2024-12-12T13:46:55Z", + "pushed_at": "2024-12-17T13:12:57Z", "homepage": "https://nf-co.re/coproid", "size": 116005, "stargazers_count": 9, @@ -8494,9 +8494,9 @@ "url": "https://api.github.com/repos/nf-core/demo", "created_at": "2024-05-05T12:11:15Z", "updated_at": "2024-10-21T11:41:32Z", - "pushed_at": "2024-12-17T11:39:20Z", + "pushed_at": "2024-12-17T13:56:01Z", "homepage": "https://nf-co.re/demo", - "size": 687, + "size": 709, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -10712,7 +10712,7 @@ "updated_at": "2024-12-05T19:05:56Z", "pushed_at": "2024-12-17T12:19:11Z", "homepage": "https://nf-co.re/differentialabundance", - "size": 9145, + "size": 9150, "stargazers_count": 66, "watchers_count": 66, "language": "Nextflow", @@ -18829,7 +18829,7 @@ "updated_at": "2024-12-16T17:01:37Z", "pushed_at": "2024-12-17T12:11:28Z", "homepage": "https://nf-co.re/mag", - "size": 24933, + "size": 26294, "stargazers_count": 219, "watchers_count": 219, "language": "Nextflow", @@ -26544,7 +26544,7 @@ } }, "network_count": 2, - "subscribers_count": 181, + "subscribers_count": 180, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -26745,7 +26745,7 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/pangenome", "created_at": "2020-11-08T18:02:43Z", - "updated_at": "2024-11-18T03:16:39Z", + "updated_at": "2024-12-17T13:38:58Z", "pushed_at": "2024-12-12T11:25:33Z", "homepage": "https://nf-co.re/pangenome", "size": 4444, @@ -31895,9 +31895,9 @@ "url": "https://api.github.com/repos/nf-core/reportho", "created_at": "2024-02-26T10:23:32Z", "updated_at": "2024-10-21T17:45:17Z", - "pushed_at": "2024-12-17T12:20:58Z", + "pushed_at": "2024-12-17T13:37:14Z", "homepage": "", - "size": 2025, + "size": 2050, "stargazers_count": 9, "watchers_count": 9, "language": "Nextflow", @@ -32122,7 +32122,7 @@ "url": "https://api.github.com/repos/nf-core/riboseq", "created_at": "2023-10-18T00:45:36Z", "updated_at": "2024-11-19T10:32:03Z", - "pushed_at": "2024-12-17T10:13:39Z", + "pushed_at": "2024-12-17T13:23:25Z", "homepage": "https://nf-co.re/riboseq", "size": 20684, "stargazers_count": 11, @@ -32769,7 +32769,7 @@ "url": "https://api.github.com/repos/nf-core/rnafusion", "created_at": "2018-10-05T13:05:57Z", "updated_at": "2024-12-17T08:45:02Z", - "pushed_at": "2024-12-12T11:24:27Z", + "pushed_at": "2024-12-17T13:48:34Z", "homepage": "https://nf-co.re/rnafusion", "size": 19886, "stargazers_count": 147, @@ -32784,7 +32784,7 @@ "forks_count": 98, "archived": false, "disabled": false, - "open_issues_count": 48, + "open_issues_count": 49, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -32797,7 +32797,7 @@ ], "visibility": "public", "forks": 98, - "open_issues": 48, + "open_issues": 49, "watchers": 147, "default_branch": "master", "temp_clone_token": "", @@ -32885,7 +32885,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 7, + "open_pr_count": 8, "repository_url": "https://github.com/nf-core/rnafusion", "contributors": [ { @@ -36873,7 +36873,7 @@ "forks_count": 417, "archived": false, "disabled": false, - "open_issues_count": 298, + "open_issues_count": 299, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -36892,7 +36892,7 @@ ], "visibility": "public", "forks": 417, - "open_issues": 298, + "open_issues": 299, "watchers": 412, "default_branch": "master", "temp_clone_token": "", @@ -43869,7 +43869,7 @@ "updated_at": "2024-12-14T13:31:55Z", "pushed_at": "2024-12-17T12:02:18Z", "homepage": "https://nf-co.re/taxprofiler", - "size": 16474, + "size": 16481, "stargazers_count": 132, "watchers_count": 132, "language": "Nextflow",