diff --git a/man/cbp_add_expression.Rd b/man/cbp_add_expression.Rd index 3b930650..25a16c34 100644 --- a/man/cbp_add_expression.Rd +++ b/man/cbp_add_expression.Rd @@ -8,6 +8,8 @@ cbp_add_expression(expression_data, verbose = TRUE) } \arguments{ \item{expression_data}{Syn id of gene expression data.} + +\item{verbose}{Whether to be chatty.} } \description{ This should be run in an existing dataset package root. diff --git a/man/make_meta_genomic_generic.Rd b/man/make_meta_genomic_generic.Rd index 1f73cc17..0538b7df 100644 --- a/man/make_meta_genomic_generic.Rd +++ b/man/make_meta_genomic_generic.Rd @@ -8,10 +8,10 @@ make_meta_genomic_generic( cancer_study_identifier, genetic_alteration_type, datatype, - reference_genome_id, - stable_id, - profile_name, - profile_description, + stable_id = NULL, + reference_genome_id = NULL, + profile_name = NULL, + profile_description = NULL, data_filename ) } @@ -22,10 +22,10 @@ make_meta_genomic_generic( \item{datatype}{The cBioPortal data type of \code{data_filename}.} -\item{reference_genome_id}{Reference genome id, e.g. 'hg19'.} - \item{stable_id}{Stable id.} +\item{reference_genome_id}{Reference genome id, e.g. 'hg19'.} + \item{profile_name}{Name of the genomic profiling. This is set by the more specific \code{make_meta} utility. For example, "Mutations" for \verb{make_*_maf} and "Copy-number alterations" for \verb{make_*_cna}.}