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Util to create normalized clinical data #125

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anngvu opened this issue Aug 30, 2023 · 0 comments
Open

Util to create normalized clinical data #125

anngvu opened this issue Aug 30, 2023 · 0 comments

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@anngvu
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anngvu commented Aug 30, 2023

This is related to nf-osi/nf-metadata-dictionary#334. Once the target normalized clinical data is defined, provide a util to create data in the shape of this target table given denormalized data, possibly from several tables/sources. Probably will need to handle things like:

  • Missing specimenIDs.
  • Coalescing data, e.g. in some tables there will be more clinical data than others
  • Resolving inconsistent data, e.g. same individualID and specimenID, but different sex or age, etc.
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