[Feature Request] Process visualisation

[Freymaurer]

Goal: Visualisation of process graph displaying IOType cell values.

@HLWeil @Brilator @bfrommer

ARCtrl

• Move query model API to ARCtrl.
• Implement Graph based View on data model in ARCtrl.
• .. find start nodes
• .. find processes based on nodes

Visualisation

• Preferred tool: Cytoscape
• display as nodes and edges.
• FileGraph: Displays Invstigation -> Study -> Assay graph
• IOType graph: Displays input/output cell values in processes
• Legend for process names for highlighting.

FileView

graph LR

i["ARC(Investigation)"]
s1["study 1"]
s2["study 2"]
s3["study 3"]

a1["assay 1"]
a2["assay 2"]
a3["assay 3"]

i --> s1
i --> s2
i --> s3

s1 --> a1
s2 --> a2
s2 --> a3
s3 --> a3

Loading

SampleView

WIP

[Brilator]

User feature request: "search for all information related to a specific sample within an ARC"

This probably asks for more than "just visualization", but would be cool to be able to search for and follow the graph for a single or set of sample(s).

[HLWeil]

Some work on this in

https://github.com/nfdi4plants/ARC-Symposium/tree/main/Process-GraphViz