From fe7477b66503479aa68551b9490aae073897f271 Mon Sep 17 00:00:00 2001 From: Luis Pedro Coelho Date: Thu, 25 Jul 2024 14:10:53 +1000 Subject: [PATCH] TST Update tests to newer versions of tools --- tests/map-minimap2/expected.sam | 2 +- tests/regression-cigar-filter/texpected.sam | 2 +- tests/samfile-select-sort/texpected.name_sorted.sam | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/map-minimap2/expected.sam b/tests/map-minimap2/expected.sam index 057564f8..099a0e4f 100644 --- a/tests/map-minimap2/expected.sam +++ b/tests/map-minimap2/expected.sam @@ -3,7 +3,7 @@ @SQ SN:B LN:3437 @SQ SN:C LN:11798 @SQ SN:D LN:3620 -@PG ID:minimap2 PN:minimap2 VN:2.26-r1175 CL:minimap2 -t 1 -a ref.fna - +@PG ID:minimap2 PN:minimap2 VN:2.28-r1209 CL:minimap2 -t 1 -a ref.fna - ReadP 0 A 189 38 80M * 0 0 CTCGAACCTCCAATCTTCGGATCCGAAGTCCGACGCCCCCGCGTCGGATGCGTTGTTACCACTGCTTTTGGTATCATTGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NM:i:0 ms:i:160 AS:i:160 nn:i:0 tp:A:P cm:i:8 s1:i:62 s2:i:0 de:f:0 rl:i:0 ReadP 0 A 69 49 80M * 0 0 TATATATATATTTCTTGTAATTTGTTGGAATACGAGAACATCGTCAATAATATATCGTATGAATTGAACCACACGGCACA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NM:i:0 ms:i:160 AS:i:160 nn:i:0 tp:A:P cm:i:9 s1:i:68 s2:i:0 de:f:0 rl:i:0 readS 0 C 35 50 80M * 0 0 TCTTGGGAACCTACAGAACTGGTTATTGGTGTCGTGGAACCTCTTACTGCTTTCAATACACGATTAGTAATCAACTGTTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NM:i:0 ms:i:160 AS:i:160 nn:i:0 tp:A:P cm:i:12 s1:i:69 s2:i:0 de:f:0 rl:i:0 diff --git a/tests/regression-cigar-filter/texpected.sam b/tests/regression-cigar-filter/texpected.sam index e0fba3c7..a45cc916 100644 --- a/tests/regression-cigar-filter/texpected.sam +++ b/tests/regression-cigar-filter/texpected.sam @@ -1,4 +1,4 @@ -@HD VN:1.6 SO:queryname +@HD VN:1.6 SO:queryname SS:queryname:natural @SQ SN:JPJG01000058 LN:30739 @SQ SN:JPJG01000046 LN:31516 @SQ SN:JPJG01000064 LN:32447 diff --git a/tests/samfile-select-sort/texpected.name_sorted.sam b/tests/samfile-select-sort/texpected.name_sorted.sam index 3ccdb0b2..382e0c77 100644 --- a/tests/samfile-select-sort/texpected.name_sorted.sam +++ b/tests/samfile-select-sort/texpected.name_sorted.sam @@ -1,4 +1,4 @@ -@HD VN:1.6 SO:queryname +@HD VN:1.6 SO:queryname SS:queryname:natural @SQ SN:122_DCM_0d2-0d45_scaffold97490_1_gene122702 LN:30803 H8:D1BN1ACXX:7:1103:3626:94786 1 122_DCM_0d2-0d45_scaffold97490_1_gene122702 17908 60 98M = 17966 156 TGTGTCTAATGTAAAAAATATTTATCCTGGTGGTCAAAGTGATTTTGCAATCACTTTAAACGATGATACAGTTGAATATTGGAGTGCAATTAACCAAA DDFEFHHHGHHFHIIJJIIJJJJHICGIJJIJIJIJIJIHIJJFHIIJGIHHIIJJHGGHII@FHCGGEGGGEHCACEDB;?;BCE@@CECCDD;>A9 NM:i:5 MD:Z:6C28T5G7G34C13 AS:i:73 XS:i:50 H8:D1BN1ACXX:7:1104:15929:33048 1 122_DCM_0d2-0d45_scaffold97490_1_gene122702 268 11 60S38M * 609 0 TGGATCCATTGTAGCTTGGGGTGATTCGACTACTGGTGGTTCTACAACCAATGGTGGTGGTTATACTGGTGCCCCTAGTAGTGTGACAAATGCAAGTA ACCCCDCDACCDDDDB?>;DCCCEBCDDCFFHHHHHGGCIHJIHHGHJJIJJJIIHJIJIJJJJIIIJIJJJIHJJJJJJJIJJJIJJHHHHHFFFFF NM:i:1 MD:Z:28G9 AS:i:33 XS:i:30