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Thomas edited this page Jan 10, 2015 · 16 revisions

What is needed to be install: In respect to python module:

  • Biopython
  • Beautiful Soup to support scholar.py

Required dataset:

INPUT: KEYWORD
OUTPUT: CSV file

NCBI Journal search module

Requirement: Biopython module
INPUT: Journal_title[str] Return: Full Abstract & Keywords

Gene Ontology search module

Requirement: Need to parse the obo file INPUT: KEYWORD[str], degree of association[int] OUTPUT: a list of synonyms within given degree of association [comma-separated]

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