From 39c6c85db8603336563d29c123c2d81fecb9317d Mon Sep 17 00:00:00 2001
From: Taylor Salo <salot@pennmedicine.upenn.edu>
Date: Sat, 9 Nov 2024 11:19:23 -0500
Subject: [PATCH] Add mrtrix3 to environment.

---
 env.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/env.yml b/env.yml
index d680f3a6..0be66d83 100644
--- a/env.yml
+++ b/env.yml
@@ -2,6 +2,7 @@ name: fmriprep
 channels:
   - https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
   - conda-forge
+  - mrtrix3
 # Update this ~yearly; last updated Jan 2024
 dependencies:
   - python=3.11
@@ -37,6 +38,8 @@ dependencies:
   - fsl-mcflirt=2111.0
   - fsl-miscmaths=2203.2
   - fsl-topup=2203.5
+  # Workflow dependencies: mrtrix3
+  - mrtrix3=3.0.4
   - pip
   - pip:
     - -r requirements.txt