From 903338b6fa5f5dbb6652d7ebdc2f6a5e679b482d Mon Sep 17 00:00:00 2001 From: NiPreps Bot Date: Mon, 23 Dec 2024 13:00:42 +0000 Subject: [PATCH] docs(master): Update docs of development line --- master/_modules/niworkflows/viz/plots.html | 3 +-- master/api/niworkflows-anat-ants-1.pdf | Bin 20450 -> 20450 bytes master/api/niworkflows-anat-ants-2.pdf | Bin 16179 -> 16179 bytes master/api/niworkflows-anat-ants-3.pdf | Bin 11748 -> 11748 bytes .../api/niworkflows-anat-coregistration-1.pdf | Bin 10523 -> 10523 bytes master/api/niworkflows-anat-freesurfer-1.pdf | Bin 13597 -> 13597 bytes master/api/niworkflows-anat-skullstrip-1.pdf | Bin 12656 -> 12656 bytes master/api/niworkflows-func-util-1.pdf | Bin 10183 -> 10183 bytes master/api/niworkflows-func-util-2.pdf | Bin 15599 -> 15599 bytes master/api/niworkflows-func-util-3.pdf | Bin 12276 -> 12276 bytes .../niworkflows-workflows-epi-refmap-1.pdf | Bin 9669 -> 9669 bytes .../api/niworkflows.interfaces.confounds.html | 20 +++++++++--------- 12 files changed, 11 insertions(+), 12 deletions(-) diff --git a/master/_modules/niworkflows/viz/plots.html b/master/_modules/niworkflows/viz/plots.html index 34397396b95..a034040f948 100644 --- a/master/_modules/niworkflows/viz/plots.html +++ b/master/_modules/niworkflows/viz/plots.html @@ -354,12 +354,11 @@

Source code for niworkflows.viz.plots

 #
 """Plotting tools shared across MRIQC and fMRIPrep."""
 
-import matplotlib.cm as cm
 import matplotlib.pyplot as plt
 import nibabel as nb
 import numpy as np
 import pandas as pd
-from matplotlib import colormaps
+from matplotlib import cm, colormaps
 from matplotlib import gridspec as mgs
 from matplotlib.colorbar import ColorbarBase
 from matplotlib.colors import Normalize
diff --git a/master/api/niworkflows-anat-ants-1.pdf b/master/api/niworkflows-anat-ants-1.pdf
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diff --git a/master/api/niworkflows-anat-freesurfer-1.pdf b/master/api/niworkflows-anat-freesurfer-1.pdf
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diff --git a/master/api/niworkflows-anat-skullstrip-1.pdf b/master/api/niworkflows-anat-skullstrip-1.pdf
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diff --git a/master/api/niworkflows-func-util-1.pdf b/master/api/niworkflows-func-util-1.pdf
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diff --git a/master/api/niworkflows-func-util-3.pdf b/master/api/niworkflows-func-util-3.pdf
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diff --git a/master/api/niworkflows-workflows-epi-refmap-1.pdf b/master/api/niworkflows-workflows-epi-refmap-1.pdf
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diff --git a/master/api/niworkflows.interfaces.confounds.html b/master/api/niworkflows.interfaces.confounds.html
index da55178d993..84eaad2b5d8 100644
--- a/master/api/niworkflows.interfaces.confounds.html
+++ b/master/api/niworkflows.interfaces.confounds.html
@@ -450,14 +450,14 @@
 indicates that the first and second exponential terms should be added.
 To retain the original terms, 1 must be included in the list.

 
  • variables (list of str) – List of variables for which exponential terms should be computed.
    • 
-
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
+
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
 
 
 
    Returns:
    
 
      
 
    • variables_exp (list) – A list of variables to include in the final data frame after adding
 the specified exponential terms.
      • 
-
    • data_exp (DataFrame) – Table of values of all observations of all variables, including any
+
    • data_exp (DataFrame) – Table of values of all observations of all variables, including any
 specified exponential terms.
      • 
 
    
 
    
@@ -474,13 +474,13 @@
 
      
 
    • expression (str) – Formula expression: either a single variable or a variable group
 paired with an operation (exponentiation or differentiation).
      • 
-
    • parent_data (DataFrame) – The source data for the model expansion.
      • 
+
    • parent_data (DataFrame) – The source data for the model expansion.
      • 
 
    
 
    
 
    Returns:
    
 
      
 
    • variables (list) – A list of variables in the provided formula expression.
      • 
-
    • data (DataFrame) – A tabulation of all terms in the provided formula expression.
      • 
+
    • data (DataFrame) – A tabulation of all terms in the provided formula expression.
      • 
 
    
 
    
 
    
@@ -524,7 +524,7 @@
 
    Temporal derivatives and exponential terms are computed for all terms
 in the grouping symbols that they adjoin.
    
 
-
  • parent_data (DataFrame) – A tabulation of all values usable in the model formula. Each additive
+
  • parent_data (DataFrame) – A tabulation of all values usable in the model formula. Each additive
 term in model_formula should correspond either to a variable in this
 data frame or to instructions for operating on a variable (for
 instance, computing temporal derivatives or exponential terms).
    • 
@@ -534,7 +534,7 @@
 
      
 
    • variables (list of str) – A list of variables included in the model parsed from the provided
 formula.
      • 
-
    • data (DataFrame) – All values in the complete model.
      • 
+
    • data (DataFrame) – All values in the complete model.
      • 
 
    
 
    
 
    
@@ -548,7 +548,7 @@
 
    
 
    Parameters:
    
 
      
-
    • data (DataFrame) – A tabulation of observations from which spike regressors should be
+
    • data (DataFrame) – A tabulation of observations from which spike regressors should be
 estimated.
      • 
 
    • criteria (dict of (str, '>' or '<' or float)) – Criteria for generating a spike regressor. If, for a given frame, the
 value of the variable corresponding to the key exceeds the threshold
@@ -575,7 +575,7 @@
 
      data – The input DataFrame with a column for each spike regressor.
      
 
      
 
      Return type:
      
-
      DataFrame
      
+
      DataFrame
      
 
      
 
    
 
    References
    
@@ -601,14 +601,14 @@
 To retain the original terms, 0 must be included in the list.
    
 
  • variables (list of str) – List of variables for which temporal derivative terms should be
 computed.
    • 
-
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
+
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
 
 
 
    Returns:
    
 
      
 
    • variables_deriv (list) – A list of variables to include in the final data frame after adding
 the specified derivative terms.
      • 
-
    • data_deriv (DataFrame) – Table of values of all observations of all variables, including any
+
    • data_deriv (DataFrame) – Table of values of all observations of all variables, including any
 specified derivative terms.
      •