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tests.yml
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name: Stable tests
# This file tests the claimed support range of nipype including
#
# * Operating systems: Linux, OSX
# * Dependencies: minimum requirements, optional requirements
# * Installation methods: setup.py, sdist, wheel, archive
on:
push:
branches:
- master
- maint/*
tags:
- "*"
pull_request:
branches:
- master
- maint/*
schedule:
# 8am EST / 9am EDT Mondays
- cron: "0 13 * * 1"
defaults:
run:
shell: bash
concurrency:
group: tests-${{ github.ref }}
cancel-in-progress: true
permissions: {}
jobs:
build:
permissions:
contents: read # to fetch code (actions/checkout)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: actions/setup-python@v5
with:
python-version: 3
- run: pip install --upgrade build twine
- name: Build sdist and wheel
run: python -m build
- run: twine check dist/*
- uses: actions/upload-artifact@v4
with:
name: dist
path: dist/
test-package:
runs-on: ubuntu-latest
needs: [build]
strategy:
matrix:
package: ["wheel", "sdist"]
steps:
- uses: actions/download-artifact@v4
with:
name: dist
path: dist/
- uses: actions/setup-python@v5
with:
python-version: 3
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Update pip
run: pip install --upgrade pip
- name: Install wheel
run: pip install dist/nipype-*.whl
if: matrix.package == 'wheel'
- name: Install sdist
run: pip install dist/nipype-*.tar.gz
if: matrix.package == 'sdist'
- run: python -c 'import nipype; print(nipype.__version__)'
- name: Install test extras
run: pip install nipype[tests]
- name: Run tests
run: pytest --doctest-modules -v --pyargs nipype
stable:
# Check each OS, all supported Python, minimum versions and latest releases
permissions:
contents: read # to fetch code (actions/checkout)
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: ["ubuntu-22.04"]
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
check: ["test"]
pip-flags: [""]
depends: ["REQUIREMENTS"]
deb-depends: [false]
nipype-extras: ["doc,tests,profiler"]
include:
- os: ubuntu-22.04
python-version: "3.8"
check: test
pip-flags: ""
depends: REQUIREMENTS
deb-depends: true
nipype-extras: doc,tests,profiler,duecredit,ssh
- os: ubuntu-20.04
python-version: 3.8
check: test
pip-flags: ""
depends: REQUIREMENTS
deb-depends: true
nipype-extras: doc,tests,nipy,profiler,duecredit,ssh
env:
DEPENDS: ${{ matrix.depends }}
CHECK_TYPE: ${{ matrix.check }}
EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }}
INSTALL_DEB_DEPENDENCIES: ${{ matrix.deb-depends }}
NIPYPE_EXTRAS: ${{ matrix.nipype-extras }}
INSTALL_TYPE: pip
CI_SKIP_TEST: 1
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Create virtual environment
run: tools/ci/create_venv.sh
- name: Build archive
run: |
source tools/ci/build_archive.sh
echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV
- name: Install Debian dependencies
run: tools/ci/install_deb_dependencies.sh
if: ${{ matrix.os == 'ubuntu-latest' }}
- name: Install dependencies
run: tools/ci/install_dependencies.sh
- name: Install Nipype
run: tools/ci/install.sh
- name: Run tests
run: tools/ci/check.sh
if: ${{ matrix.check != 'skiptests' }}
- uses: codecov/codecov-action@v4
with:
file: coverage.xml
token: ${{ secrets.CODECOV_TOKEN }}
if: ${{ always() }}
- name: Upload pytest test results
uses: actions/upload-artifact@v4
with:
name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.deb-depends }}
path: test-results.xml
if: ${{ always() && matrix.check == 'test' }}
publish:
runs-on: ubuntu-latest
environment: "Package deployment"
needs: [stable, test-package]
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/')
steps:
- uses: actions/download-artifact@v4
with:
name: dist
path: dist/
- uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.PYPI_API_TOKEN }}