testslurm.yml

name: SLURM

on:
  push:
    branches:
      - master
  pull_request:

jobs:
  build:
    runs-on: ubuntu-latest
    env:
      DOCKER_IMAGE: giovtorres/docker-centos7-slurm:latest

    steps:
    - name: Disable etelemetry
      run: echo "NO_ET=TRUE" >> $GITHUB_ENV
    - uses: actions/checkout@v4
    - name: Pull docker image
      run: |
        docker pull $DOCKER_IMAGE
        # Have image running in the background
        docker run `bash <(curl -s https://codecov.io/env)` -itd -h slurmctl --cap-add sys_admin -d --name slurm -v `pwd`:/pydra -e NO_ET=$NO_ET $DOCKER_IMAGE
    - name: Display previous jobs with sacct
      run: |
        echo "Allowing ports/daemons time to start" && sleep 10
        docker exec slurm bash -c "sacctmgr -i add cluster name=linux \
          && supervisorctl restart slurmdbd \
          && supervisorctl restart slurmctld \
          && sacctmgr -i add account none,test Cluster=linux Description='none' Organization='none'"
        docker exec slurm bash -c "sacct && sinfo && squeue" 2&> /dev/null
        if [ $? -ne 0 ]; then
            echo "Slurm docker image error"
            exit 1
        fi
    - name: Setup Python
      run: |
        docker exec slurm bash -c "echo $NO_ET"
        docker exec slurm bash -c "ls -la && echo list top level dir"
        docker exec slurm bash -c "ls -la /pydra && echo list pydra dir"
        docker exec slurm bash -c "pip3.9 install --upgrade pip && pip3.9 install -e /pydra[test] && python3.9 -c 'import pydra; print(pydra.__version__)'"
    - name: Run pytest
      run: |
        docker exec slurm bash -c "pytest --color=yes -vs -n auto --cov pydra --cov-config /pydra/.coveragerc --cov-report xml:/pydra/cov.xml --doctest-modules /pydra/pydra/ -k 'not test_audit_prov and not test_audit_prov_messdir_1 and not test_audit_prov_messdir_2 and not test_audit_prov_wf and not test_audit_all'"
    - name: Upload to codecov
      run: |
        docker exec slurm bash -c "pip3.9 install urllib3==1.26.6"
        docker exec slurm bash -c "codecov --root /pydra -f /pydra/cov.xml -F unittests"
        docker rm -f slurm