Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

custom codon usage tables, integrate with CoCoPUTs #65

Open
chenhijy opened this issue Jul 3, 2024 · 2 comments
Open

custom codon usage tables, integrate with CoCoPUTs #65

chenhijy opened this issue Jul 3, 2024 · 2 comments

Comments

@chenhijy
Copy link

chenhijy commented Jul 3, 2024

Would be cool to allow users to input custom codon usage tables and/or draw from the database here https://dnahive.fda.gov/dna.cgi?cmd=cuts_main

@nleroy917
Copy link
Owner

Would be cool to allow users to input custom codon usage tables

Yes, I totally agree this would be a great feature! For the database... this is the source of our codon usage data: https://doi.org/10.1186/s12859-017-1793-7

Which (totally correct me if I am wrong), is the same as you linked?

@chenhijy
Copy link
Author

chenhijy commented Jul 3, 2024

I see -- yes, same database but I guess your backend hasn't been updated to include the latest data for newer species? I'm interested in optimizing for Marchantia polymorpha (for which I can find usage tables at CoCoPUT but not at https://www.optipyzer.com/).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants