_pkgdown.yml

url: https://github.com/noaa-afsc/sdmgamindex/
csl: 'https://raw.githubusercontent.com/citation-style-language/styles/master/apa-no-ampersand.csl'
bibliography: 'https://raw.githubusercontent.com/afsc-gap-products/citations/main/cite/bibliography.bib'


template:
  bootstrap: 5
  bslib:
    pkgdown-nav-height: 100px
    
navbar:
  structure:
    left: [reference, vignettes, articles, citation, news]
  components:
    reference:
      text: Functions
      href: reference/index.html
    vignettes:
      text: Vignettes
      menu:
      - text: Intro to GAMs
        href: articles/A-gam-basics.html
      - text: Fitting a spatiotemporal model and deriving an abundance index
        href: articles/B_gam_sdmTMB_example.html
      - text: Compare {sdmgamindex} to regular GAMs
        href: articles/C-model-comparisons.html
      - text: sdmgamindex case study with and without covariates for the Eastern Bering Sea
        href: articles/D-ebs-case-study.html
      - text: sdmgamindex case study with and without covariates fot the Gulf of Alaska
        href: articles/D-goa-case-study.html
    news:
     text: Release Notes
     menu:
      - text: "v 2022.09.26"
        href: "https://github.com/noaa-afsc/sdmgamindex/releases/tag/2022.09.26"
    
footer:
  structure: 
    right: FALSE
    left: built_with
    
home:
  sidebar: FALSE
    
reference:
  - title: Get Data Format
    contents:
      - starts_with("get_")
  - title: Functions
    contents:
      - "anova_likelihood_ratio_test"
      - "calc_distance"
      - "concentration_transform"
      - "consistency_external"
      - "consistency_internal"
      - "convert_crs"
      - "convert_deg_rad"
      - "export_surveyidx"
      - "fix_age_group"
      - "qres_tweedie"
      - "redo_surveyidx"
  - title: Plot Functions
    contents:
      - starts_with("plot_")
  - title: Data
    contents:
      - "noaa_afsc_public_foss"
      - "noaa_afsc_biomass_estimates"
      - "pred_grid_ebs"