-
Notifications
You must be signed in to change notification settings - Fork 12
/
README.windows
40 lines (20 loc) · 1.1 KB
/
README.windows
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
For details about installation and use on Windows, please see
http://circos.ca/tutorials/lessons/configuration/unix_vs_windows/
http://circos.ca/tutorials/lessons/configuration/distribution_and_installation/
Specifically, be aware of the following:
1. Windows file paths use "\" as a directory separator, whereas UNIX
uses "/". The UNIX convention is used throughout the tutorials. Thus
when you see
tutorials/2/2/circos.conf
in any of the tutorials or documents, read
tutorials\2\2\circos.conf
2. From the command line, you'll need to run perl and use the circos script as the argument
perl bin\circos -conf tutorials\2\2\circos.conf
Windows won't know what to do with the bin\circos file otherwise.
3. By default, tutorial images are created in /tmp, a directory that
does not exist on Windows. You'll need to either (a) create this
directory or override the output directory by using the -outputdir
parameter
perl bin\circos -conf tutorials\2\2\circos.conf -outputdir c:\path\to\image\directory
You can change the output filename using -outputfile.
perl bin\circos [...] -outputfile myfile.png