diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
new file mode 100644
index 0000000..ea4b9e5
--- /dev/null
+++ b/.github/CODEOWNERS
@@ -0,0 +1,8 @@
+# See https://help.github.com/articles/about-codeowners/
+# for more info about CODEOWNERS file
+
+# It uses the same pattern rule for gitignore file
+# https://git-scm.com/docs/gitignore#_pattern_format
+
+# Core
+* @nsyzrantsev
\ No newline at end of file
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 0000000..35695cf
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,22 @@
+version: 2
+updates:
+  # Maintain dependencies for Cargo
+  - package-ecosystem: cargo
+    directory: "/"
+    schedule:
+      interval: daily
+    open-pull-requests-limit: 10
+
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: github-actions
+    directory: "/"
+    schedule:
+      interval: daily
+    open-pull-requests-limit: 10
+    groups:
+      minor:
+        update-types:
+          - "minor"
+      patch:
+        update-types:
+          - "patch"
\ No newline at end of file
diff --git a/.github/mergify.yml b/.github/mergify.yml
new file mode 100644
index 0000000..ff93477
--- /dev/null
+++ b/.github/mergify.yml
@@ -0,0 +1,7 @@
+pull_request_rules:
+  - name: Automatic merge for Dependabot pull requests
+    conditions:
+      - author=dependabot[bot]
+    actions:
+      merge:
+        method: squash
\ No newline at end of file
diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml
new file mode 100644
index 0000000..7d6b881
--- /dev/null
+++ b/.github/workflows/cd.yml
@@ -0,0 +1,234 @@
+name: Continuous Deployment
+
+on:
+  push:
+    tags:
+      - "v*.*.*"
+
+jobs:
+  generate-changelog:
+    name: Generate changelog
+    runs-on: ubuntu-22.04
+    outputs:
+      release_body: ${{ steps.git-cliff.outputs.content }}
+    steps:
+      - name: Install Rust toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          profile: minimal
+          toolchain: stable
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: Install git-cliff
+        uses: actions-rs/cargo@v1
+        id: git-cliff
+        with:
+          command: install
+          args: git-cliff
+      - name: Run git-cliff to generate changelog
+        run: git-cliff -vv --latest --no-exec --github-repo ${{ github.repository }} --config cliff.toml
+        id: barkit
+
+  publish-binaries:
+    name: Publish binaries
+    needs: generate-changelog
+    runs-on: ${{ matrix.build.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        build:
+          - {
+              NAME: linux-x64-glibc,
+              OS: ubuntu-22.04,
+              TOOLCHAIN: stable,
+              TARGET: x86_64-unknown-linux-gnu,
+              NPM_PUBLISH: true,
+            }
+          - {
+              NAME: linux-x64-musl,
+              OS: ubuntu-22.04,
+              TOOLCHAIN: stable,
+              TARGET: x86_64-unknown-linux-musl,
+              NPM_PUBLISH: false,
+            }
+          - {
+              NAME: linux-x86-glibc,
+              OS: ubuntu-22.04,
+              TOOLCHAIN: stable,
+              TARGET: i686-unknown-linux-gnu,
+              NPM_PUBLISH: false,
+            }
+          - {
+              NAME: linux-x86-musl,
+              OS: ubuntu-22.04,
+              TOOLCHAIN: stable,
+              TARGET: i686-unknown-linux-musl,
+              NPM_PUBLISH: false,
+            }
+          - {
+              NAME: linux-arm64-glibc,
+              OS: ubuntu-22.04,
+              TOOLCHAIN: stable,
+              TARGET: aarch64-unknown-linux-gnu,
+              NPM_PUBLISH: true,
+            }
+          - {
+              NAME: linux-arm64-musl,
+              OS: ubuntu-22.04,
+              TOOLCHAIN: stable,
+              TARGET: aarch64-unknown-linux-musl,
+              NPM_PUBLISH: false,
+            }
+          - {
+              NAME: win32-x64-mingw,
+              OS: windows-2022,
+              TOOLCHAIN: stable,
+              TARGET: x86_64-pc-windows-gnu,
+              NPM_PUBLISH: false,
+            }
+          - {
+              NAME: win32-x64-msvc,
+              OS: windows-2022,
+              TOOLCHAIN: stable,
+              TARGET: x86_64-pc-windows-msvc,
+              NPM_PUBLISH: true,
+            }
+          - {
+              NAME: win32-x86-msvc,
+              OS: windows-2022,
+              TOOLCHAIN: stable,
+              TARGET: i686-pc-windows-msvc,
+              NPM_PUBLISH: false,
+            }
+          - {
+              NAME: win32-arm64-msvc,
+              OS: windows-2022,
+              TOOLCHAIN: stable,
+              TARGET: aarch64-pc-windows-msvc,
+              NPM_PUBLISH: true,
+            }
+          - {
+              NAME: darwin-x64,
+              OS: macos-14,
+              TOOLCHAIN: stable,
+              TARGET: x86_64-apple-darwin,
+              NPM_PUBLISH: true,
+            }
+          - {
+              NAME: darwin-arm64,
+              OS: macos-14,
+              TOOLCHAIN: stable,
+              TARGET: aarch64-apple-darwin,
+              NPM_PUBLISH: true,
+            }
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Set the release version
+        shell: bash
+        run: echo "RELEASE_VERSION=${GITHUB_REF:11}" >> "$GITHUB_ENV"
+      - name: Install dependencies
+        shell: bash
+        run: |
+          if [[ "${{ matrix.build.NAME }}" == *"-musl" ]]; then
+            sudo apt-get update
+            sudo apt-get install -y --no-install-recommends \
+              --allow-unauthenticated musl-tools
+          fi
+      - name: Install Rust toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: ${{ matrix.build.TOOLCHAIN }}
+          target: ${{ matrix.build.TARGET }}
+          override: true
+      - name: Build (linux/macos)
+        if: matrix.build.OS != 'windows-2022'
+        uses: actions-rs/cargo@v1
+        with:
+          use-cross: true
+          command: build
+          args: --release --locked --target ${{ matrix.build.TARGET }}
+      - name: Build (windows)
+        if: matrix.build.OS == 'windows-2022'
+        uses: actions-rs/cargo@v1
+        with:
+          command: build
+          args: --release --locked --target ${{ matrix.build.TARGET }} # --no-default-features
+      - name: Prepare release assets
+        shell: bash
+        run: |
+          mkdir -p release/
+          cp {LICENSE,README.md,CHANGELOG.md} release/
+          for bin in 'barkit'; do
+            if [ "${{ matrix.build.OS }}" = "windows-2022" ]; then
+              bin="${bin}.exe"
+            fi
+            cp "target/${{ matrix.build.TARGET }}/release/${bin}" release/
+          done
+          mv release/ barkit-${{ env.RELEASE_VERSION }}/
+      - name: Create release artifacts
+        shell: bash
+        run: |
+          if [ "${{ matrix.build.OS }}" = "windows-2022" ]; then
+            7z a -tzip "barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}.zip" \
+              barkit-${{ env.RELEASE_VERSION }}/
+          else
+            tar -czvf barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}.tar.gz \
+              barkit-${{ env.RELEASE_VERSION }}/
+            shasum -a 512 barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}.tar.gz \
+              > barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}.tar.gz.sha512
+          fi
+      - name: Sign the release
+        if: matrix.build.OS == 'ubuntu-22.04' || matrix.build.OS == 'macos-14'
+        run: |
+          echo "${{ secrets.GPG_RELEASE_KEY }}" | base64 --decode > private.key
+          echo "${{ secrets.GPG_PASSPHRASE }}" | gpg --pinentry-mode=loopback \
+            --passphrase-fd 0 --import private.key
+          echo "${{ secrets.GPG_PASSPHRASE }}" | gpg --pinentry-mode=loopback \
+            --passphrase-fd 0 --detach-sign \
+            barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}.tar.gz
+      - name: Publish to GitHub
+        if: ${{ !contains(github.ref, '-') }}
+        uses: svenstaro/upload-release-action@v2
+        with:
+          repo_token: ${{ secrets.API_TOKEN }}
+          file: barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}*
+          file_glob: true
+          overwrite: true
+          tag: ${{ github.ref }}
+          release_name: "Release v${{ env.RELEASE_VERSION }}"
+          body: "${{ needs.generate-changelog.outputs.release_body }}"
+      - name: Publish to GitHub (pre-release)
+        if: ${{ contains(github.ref, '-') }}
+        uses: svenstaro/upload-release-action@v2
+        with:
+          repo_token: ${{ secrets.API_TOKEN }}
+          file: barkit-${{ env.RELEASE_VERSION }}-${{ matrix.build.TARGET }}*
+          file_glob: true
+          overwrite: true
+          tag: ${{ github.ref }}
+          release_name: "Pre-release v${{ env.RELEASE_VERSION }}"
+          prerelease: true
+
+  publish-crates-io:
+    name: Publish on crates.io
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Set the release version
+        run: echo "RELEASE_VERSION=${GITHUB_REF:11}" >> "$GITHUB_ENV"
+      - name: Install Rust toolchain
+        uses: dtolnay/rust-toolchain@stable
+        with:
+          targets: x86_64-unknown-linux-gnu
+      - name: Publish the barkit-extract binary
+        run: |
+          cargo publish --manifest-path barkit-extract/Cargo.toml \
+            --locked --token ${{ secrets.CARGO_REGISTRY_TOKEN }}
+      - name: Publish the barkit binary
+        run: |
+          cargo publish --manifest-path Cargo.toml \
+            --locked --token ${{ secrets.CARGO_REGISTRY_TOKEN }}
\ No newline at end of file
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..1b4ffa1
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,128 @@
+name: Continuous Integration
+
+on:
+  pull_request:
+  push:
+    branches:
+      - main
+  schedule:
+    - cron: "0 0 * * 0"
+
+permissions:
+  pull-requests: write
+
+jobs:
+  check:
+    name: Check
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Install toolchain
+        uses: dtolnay/rust-toolchain@stable
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Check
+        uses: actions-rs/cargo@v1
+        with:
+          command: check
+          args: --locked --verbose
+      - name: Check without default features
+        uses: actions-rs/cargo@v1
+        with:
+          command: check
+          args: --locked --no-default-features --verbose
+
+  typos:
+    name: Typos
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Check typos
+        uses: crate-ci/typos@master
+
+  test:
+    name: Test suite
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Install toolchain
+        uses: dtolnay/rust-toolchain@nightly
+      - name: Checkout
+        if: github.event_name != 'pull_request'
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: Checkout
+        if: github.event_name == 'pull_request'
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.pull_request.head.sha }}
+          fetch-depth: 0
+      - name: Setup cargo-tarpaulin
+        uses: taiki-e/install-action@cargo-tarpaulin
+      - name: Run tests
+        run: |
+          cargo test --all --no-default-features \
+            -- --skip "repo::test::git_upstream_remote"
+      - name: Run tests
+        run: |
+          cargo tarpaulin --out xml --verbose --all-features \
+            -- --skip "repo::test::git_upstream_remote"
+      - name: Upload reports to codecov
+        uses: codecov/codecov-action@v4
+        with:
+          name: code-coverage-report
+          file: cobertura.xml
+          flags: unit-tests
+          fail_ci_if_error: true
+          verbose: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+  clippy:
+    name: Lints
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Install toolchain
+        uses: dtolnay/rust-toolchain@nightly
+        with:
+          components: clippy
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Check the lints
+        uses: actions-rs/cargo@v1
+        with:
+          command: clippy
+          args: --tests --verbose -- -D warnings
+
+  rustfmt:
+    name: Formatting
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Install toolchain
+        uses: dtolnay/rust-toolchain@nightly
+        with:
+          components: rustfmt
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Check the formatting
+        uses: actions-rs/cargo@v1
+        with:
+          command: fmt
+          args: --all -- --check --verbose
+
+  msrv:
+    name: Check Rust version
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Install cargo-binstall
+        uses: taiki-e/install-action@cargo-binstall
+      - name: Install cargo-msrv
+        run: cargo binstall -y cargo-msrv
+      - name: Run cargo-msrv
+        shell: bash
+        run: |
+          for package in barkit-extract; do
+            printf "Checking MSRV for %s..." "$package"
+            cargo msrv --output-format json --path "$package" verify | tail -n 1 | jq --exit-status '.success'
+          done
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index 196e176..a3040a7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,10 +3,6 @@
 debug/
 target/
 
-# Remove Cargo.lock from gitignore if creating an executable, leave it for libraries
-# More information here https://doc.rust-lang.org/cargo/guide/cargo-toml-vs-cargo-lock.html
-Cargo.lock
-
 # These are backup files generated by rustfmt
 **/*.rs.bk
 
diff --git a/Cargo.lock b/Cargo.lock
new file mode 100644
index 0000000..a26daed
--- /dev/null
+++ b/Cargo.lock
@@ -0,0 +1,1117 @@
+# This file is automatically @generated by Cargo.
+# It is not intended for manual editing.
+version = 3
+
+[[package]]
+name = "adler"
+version = "1.0.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
+
+[[package]]
+name = "aho-corasick"
+version = "1.1.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916"
+dependencies = [
+ "memchr",
+]
+
+[[package]]
+name = "anstream"
+version = "0.6.14"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "418c75fa768af9c03be99d17643f93f79bbba589895012a80e3452a19ddda15b"
+dependencies = [
+ "anstyle",
+ "anstyle-parse",
+ "anstyle-query",
+ "anstyle-wincon",
+ "colorchoice",
+ "is_terminal_polyfill",
+ "utf8parse",
+]
+
+[[package]]
+name = "anstyle"
+version = "1.0.7"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "038dfcf04a5feb68e9c60b21c9625a54c2c0616e79b72b0fd87075a056ae1d1b"
+
+[[package]]
+name = "anstyle-parse"
+version = "0.2.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c03a11a9034d92058ceb6ee011ce58af4a9bf61491aa7e1e59ecd24bd40d22d4"
+dependencies = [
+ "utf8parse",
+]
+
+[[package]]
+name = "anstyle-query"
+version = "1.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ad186efb764318d35165f1758e7dcef3b10628e26d41a44bc5550652e6804391"
+dependencies = [
+ "windows-sys",
+]
+
+[[package]]
+name = "anstyle-wincon"
+version = "3.0.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "61a38449feb7068f52bb06c12759005cf459ee52bb4adc1d5a7c4322d716fb19"
+dependencies = [
+ "anstyle",
+ "windows-sys",
+]
+
+[[package]]
+name = "autocfg"
+version = "1.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0c4b4d0bd25bd0b74681c0ad21497610ce1b7c91b1022cd21c80c6fbdd9476b0"
+
+[[package]]
+name = "barkit"
+version = "0.1.0"
+dependencies = [
+ "barkit-extract",
+ "clap",
+]
+
+[[package]]
+name = "barkit-extract"
+version = "0.1.0"
+dependencies = [
+ "clap",
+ "console",
+ "fancy-regex",
+ "flate2",
+ "gzp",
+ "indicatif",
+ "lz4",
+ "rayon",
+ "regex",
+ "rstest",
+ "seq_io",
+ "thiserror",
+]
+
+[[package]]
+name = "bit-set"
+version = "0.5.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0700ddab506f33b20a03b13996eccd309a48e5ff77d0d95926aa0210fb4e95f1"
+dependencies = [
+ "bit-vec",
+]
+
+[[package]]
+name = "bit-vec"
+version = "0.6.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb"
+
+[[package]]
+name = "buffer-redux"
+version = "1.0.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4e8acf87c5b9f5897cd3ebb9a327f420e0cae9dd4e5c1d2e36f2c84c571a58f1"
+dependencies = [
+ "memchr",
+]
+
+[[package]]
+name = "bumpalo"
+version = "3.16.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "79296716171880943b8470b5f8d03aa55eb2e645a4874bdbb28adb49162e012c"
+
+[[package]]
+name = "byteorder"
+version = "1.5.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
+
+[[package]]
+name = "bytes"
+version = "1.7.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "8318a53db07bb3f8dca91a600466bdb3f2eaadeedfdbcf02e1accbad9271ba50"
+
+[[package]]
+name = "cc"
+version = "1.1.7"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "26a5c3fd7bfa1ce3897a3a3501d362b2d87b7f2583ebcb4a949ec25911025cbc"
+
+[[package]]
+name = "cfg-if"
+version = "1.0.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
+
+[[package]]
+name = "clap"
+version = "4.5.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "84b3edb18336f4df585bc9aa31dd99c036dfa5dc5e9a2939a722a188f3a8970d"
+dependencies = [
+ "clap_builder",
+ "clap_derive",
+]
+
+[[package]]
+name = "clap_builder"
+version = "4.5.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c1c09dd5ada6c6c78075d6fd0da3f90d8080651e2d6cc8eb2f1aaa4034ced708"
+dependencies = [
+ "anstream",
+ "anstyle",
+ "clap_lex",
+ "strsim",
+]
+
+[[package]]
+name = "clap_derive"
+version = "4.5.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "2bac35c6dafb060fd4d275d9a4ffae97917c13a6327903a8be2153cd964f7085"
+dependencies = [
+ "heck",
+ "proc-macro2",
+ "quote",
+ "syn",
+]
+
+[[package]]
+name = "clap_lex"
+version = "0.7.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4b82cf0babdbd58558212896d1a4272303a57bdb245c2bf1147185fb45640e70"
+
+[[package]]
+name = "cmake"
+version = "0.1.50"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a31c789563b815f77f4250caee12365734369f942439b7defd71e18a48197130"
+dependencies = [
+ "cc",
+]
+
+[[package]]
+name = "colorchoice"
+version = "1.0.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0b6a852b24ab71dffc585bcb46eaf7959d175cb865a7152e35b348d1b2960422"
+
+[[package]]
+name = "console"
+version = "0.15.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0e1f83fc076bd6dd27517eacdf25fef6c4dfe5f1d7448bafaaf3a26f13b5e4eb"
+dependencies = [
+ "encode_unicode",
+ "lazy_static",
+ "libc",
+ "unicode-width",
+ "windows-sys",
+]
+
+[[package]]
+name = "core_affinity"
+version = "0.8.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "622892f5635ce1fc38c8f16dfc938553ed64af482edb5e150bf4caedbfcb2304"
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+ "memchr",
+ "scoped_threadpool",
+ "serde",
+ "serde_derive",
+]
+
+[[package]]
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+ "winnow",
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+ "bumpalo",
+ "log",
+ "once_cell",
+ "proc-macro2",
+ "quote",
+ "syn",
+ "wasm-bindgen-shared",
+]
+
+[[package]]
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+ "quote",
+ "wasm-bindgen-macro-support",
+]
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+ "quote",
+ "syn",
+ "wasm-bindgen-backend",
+ "wasm-bindgen-shared",
+]
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+ "winapi-i686-pc-windows-gnu",
+ "winapi-x86_64-pc-windows-gnu",
+]
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+ "windows-targets",
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+dependencies = [
+ "windows_aarch64_gnullvm",
+ "windows_aarch64_msvc",
+ "windows_i686_gnu",
+ "windows_i686_gnullvm",
+ "windows_i686_msvc",
+ "windows_x86_64_gnu",
+ "windows_x86_64_gnullvm",
+ "windows_x86_64_msvc",
+]
+
+[[package]]
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+
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+
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+checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
+
+[[package]]
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+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
+
+[[package]]
+name = "winnow"
+version = "0.5.40"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f593a95398737aeed53e489c785df13f3618e41dbcd6718c6addbf1395aa6876"
+dependencies = [
+ "memchr",
+]
diff --git a/Cargo.toml b/Cargo.toml
index a4477c3..da0ab88 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,16 +1,23 @@
 [package]
 name = "barkit"
-version = "0.1.0"
+version = "0.1.0" # managed by release.sh
 edition = "2021"
+authors = ["Nikita Syzrantsev syzrantsev.n@yandex.ru"]
+description = "Tool to process barcodes in FASTQ"
+license = "GPL-3.0"
+readme = "README.md"
+homepage = "https://github.com/nsyzrantsev/barkit"
+repository = "https://github.com/nsyzrantsev/barkit"
+keywords = ["bioinformatics", "sequencing", "barcodes"]
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 
 [workspace]
-members = ["extract"]
+members = ["barkit-extract"]
 
 [dependencies]
 clap = { version = "4.5.4", features = ["env", "derive"] }
-extract = { path = "extract" }
+barkit-extract = { version = "0.1.0", path = "barkit-extract" }
 
 [profile.dev]
 opt-level = 0
diff --git a/README.md b/README.md
index d37e05e..8b04636 100644
--- a/README.md
+++ b/README.md
@@ -5,11 +5,10 @@
 
 BarKit (Barcodes Toolkit) is a toolkit designed for manipulating FASTQ barcodes.
 
-## Building from Source
+## Installation
 
 ```bash
-cargo build --release
-sudo mv barkit /usr/local/bin/
+cargo install barkit
 ```
 
 ## Extract Command
diff --git a/barkit-extract/Cargo.toml b/barkit-extract/Cargo.toml
new file mode 100644
index 0000000..8d4a3b1
--- /dev/null
+++ b/barkit-extract/Cargo.toml
@@ -0,0 +1,28 @@
+[package]
+name = "barkit-extract"
+version = "0.1.0" # managed by release.sh
+edition = "2021"
+authors = ["Nikita Syzrantsev syzrantsev.n@yandex.ru"]
+description = "Tool to extract barcodes"
+license = "GPL-3.0"
+readme = "../README.md"
+homepage = "https://github.com/nsyzrantsev/barkit"
+repository = "https://github.com/nsyzrantsev/barkit"
+keywords = ["bioinformatics", "sequencing", "barcodes"]
+rust-version = "1.80.0"
+
+[dependencies]
+clap = { version = "4.5.4", features = ["derive", "env"] }
+flate2 = "1.0.30"
+regex = "1.10.4"
+seq_io = "0.3.2"
+thiserror = "1.0.61"
+rayon = "1.10.0"
+fancy-regex = "0.13.0"
+lz4 = "1.26.0"
+gzp = "0.11.3"
+indicatif = "0.17.8"
+console = "0.15.8"
+
+[dev-dependencies]
+rstest = "0.22.0"
diff --git a/extract/src/barcode.rs b/barkit-extract/src/barcode.rs
similarity index 97%
rename from extract/src/barcode.rs
rename to barkit-extract/src/barcode.rs
index 381404d..c332523 100644
--- a/extract/src/barcode.rs
+++ b/barkit-extract/src/barcode.rs
@@ -33,7 +33,7 @@ const TRANSLATION_TABLE: [u8; 256] = {
 pub enum BarcodeType {
     Umi,
     Sample,
-    Cell
+    Cell,
 }
 
 impl fmt::Display for BarcodeType {
@@ -84,7 +84,12 @@ impl BarcodeRegex {
 
     fn parse_capture_groups(regex: &Regex) -> Result<Vec<BarcodeType>, Error> {
         let mut capture_groups = Vec::<BarcodeType>::new();
-        for capture_group in regex.capture_names().collect::<Vec<_>>().into_iter().flatten() {
+        for capture_group in regex
+            .capture_names()
+            .collect::<Vec<_>>()
+            .into_iter()
+            .flatten()
+        {
             capture_groups.push(BarcodeType::get_barcode_type(capture_group)?)
         }
         if capture_groups.is_empty() {
diff --git a/extract/src/error.rs b/barkit-extract/src/error.rs
similarity index 100%
rename from extract/src/error.rs
rename to barkit-extract/src/error.rs
diff --git a/extract/src/fastq.rs b/barkit-extract/src/fastq.rs
similarity index 99%
rename from extract/src/fastq.rs
rename to barkit-extract/src/fastq.rs
index 09c119f..3778398 100644
--- a/extract/src/fastq.rs
+++ b/barkit-extract/src/fastq.rs
@@ -137,7 +137,7 @@ pub fn create_writer(
     file: &str,
     compression: &CompressionType,
     threads_num: usize,
-    force: bool
+    force: bool,
 ) -> Result<WriterType, error::Error> {
     let path = Path::new(file);
 
@@ -146,7 +146,8 @@ pub fn create_writer(
         return Err(io::Error::new(
             io::ErrorKind::AlreadyExists,
             format!("File {} already exists and force is set to false", file),
-        ).into());
+        )
+        .into());
     }
 
     let file = if force {
diff --git a/extract/src/lib.rs b/barkit-extract/src/lib.rs
similarity index 100%
rename from extract/src/lib.rs
rename to barkit-extract/src/lib.rs
diff --git a/extract/src/logger.rs b/barkit-extract/src/logger.rs
similarity index 100%
rename from extract/src/logger.rs
rename to barkit-extract/src/logger.rs
diff --git a/extract/src/pattern.rs b/barkit-extract/src/pattern.rs
similarity index 100%
rename from extract/src/pattern.rs
rename to barkit-extract/src/pattern.rs
diff --git a/extract/src/run.rs b/barkit-extract/src/run.rs
similarity index 84%
rename from extract/src/run.rs
rename to barkit-extract/src/run.rs
index cde85fa..e26fe0c 100644
--- a/extract/src/run.rs
+++ b/barkit-extract/src/run.rs
@@ -23,7 +23,7 @@ pub fn run(
     max_error: usize,
     output_compression: CompressionType,
     quiet: bool,
-    force: bool
+    force: bool,
 ) {
     match (fq2, out_fq2, pattern1, pattern2) {
         (Some(fq2), Some(out_fq2), pattern1, pattern2) => process_pair_end_fastq(
@@ -73,9 +73,8 @@ fn process_single_end_fastq(
     max_error: usize,
     output_compression: CompressionType,
     quiet: bool,
-    force: bool
+    force: bool,
 ) {
-    
     let mut reader =
         fastq::create_reader(&read, threads, max_memory).expect("Failed to create reader");
     let writer = fastq::create_writer(&out_read, &output_compression, threads, force)
@@ -88,7 +87,8 @@ fn process_single_end_fastq(
         );
     }
 
-    let barcode_re = BarcodeRegex::new(&pattern, max_error).expect("Failed to create barcode regex with the provided pattern and max error.");
+    let barcode_re = BarcodeRegex::new(&pattern, max_error)
+        .expect("Failed to create barcode regex with the provided pattern and max error.");
 
     let progress_bar = match quiet {
         false => {
@@ -101,7 +101,6 @@ fn process_single_end_fastq(
         true => None,
     };
 
-
     if !quiet {
         println!(
             "{} Extracting barcodes from reads...",
@@ -133,11 +132,15 @@ fn process_single_end_fastq(
             let writer = writer.lock().unwrap();
             fastq::save_single_end_reads_to_file(result_reads, writer);
 
-            if let Some(ref pb) = progress_bar { pb.inc(records.len() as u64) }
+            if let Some(ref pb) = progress_bar {
+                pb.inc(records.len() as u64)
+            }
         }
     }
 
-    if let Some(pb) = progress_bar { pb.finish_with_message("all reads successfully processed") }
+    if let Some(pb) = progress_bar {
+        pb.finish_with_message("all reads successfully processed")
+    }
 }
 
 #[allow(clippy::too_many_arguments)]
@@ -155,12 +158,12 @@ fn process_pair_end_fastq(
     max_error: usize,
     output_compression: CompressionType,
     quiet: bool,
-    force: bool
+    force: bool,
 ) {
-    let mut reader1 =
-        fastq::create_reader(&fq1, threads, max_memory).expect("Failed to read input forward reads");
-    let mut reader2 =
-        fastq::create_reader(&fq2, threads, max_memory).expect("Failed to read input reverse reads");
+    let mut reader1 = fastq::create_reader(&fq1, threads, max_memory)
+        .expect("Failed to read input forward reads");
+    let mut reader2 = fastq::create_reader(&fq2, threads, max_memory)
+        .expect("Failed to read input reverse reads");
 
     let writer1 = fastq::create_writer(&out_fq1, &output_compression, threads, force)
         .expect("Failed to write output forward reads");
@@ -175,11 +178,15 @@ fn process_pair_end_fastq(
     }
 
     let barcode1 = pattern1.as_ref().map(|pat| {
-        BarcodeRegex::new(pat, max_error).expect("Failed to create barcode regex for pattern1 with the provided pattern and max error")
+        BarcodeRegex::new(pat, max_error).expect(
+            "Failed to create barcode regex for pattern1 with the provided pattern and max error",
+        )
     });
 
     let barcode2 = pattern2.as_ref().map(|pat| {
-        BarcodeRegex::new(pat, max_error).expect("Failed to create barcode regex for pattern2 with the provided pattern and max error")
+        BarcodeRegex::new(pat, max_error).expect(
+            "Failed to create barcode regex for pattern2 with the provided pattern and max error",
+        )
     });
 
     let started = Instant::now();
@@ -245,12 +252,16 @@ fn process_pair_end_fastq(
             let writer2 = writer2.lock().unwrap();
             fastq::save_pair_end_reads_to_file(result_read_pairs, writer1, writer2);
 
-            if let Some(ref pb) = progress_bar { pb.inc(records1.len() as u64) }
+            if let Some(ref pb) = progress_bar {
+                pb.inc(records1.len() as u64)
+            }
         }
     }
-    if progress_bar.is_some() { println!(
-        "{} Done in {}",
-        logger::SPARKLE,
-        HumanDuration(started.elapsed())
-    )}
+    if progress_bar.is_some() {
+        println!(
+            "{} Done in {}",
+            logger::SPARKLE,
+            HumanDuration(started.elapsed())
+        )
+    }
 }
diff --git a/cliff.toml b/cliff.toml
new file mode 100644
index 0000000..03308cb
--- /dev/null
+++ b/cliff.toml
@@ -0,0 +1,108 @@
+# git-cliff ~ default configuration file
+# https://git-cliff.org/docs/configuration
+#
+# Lines starting with "#" are comments.
+# Configuration options are organized into tables and keys.
+# See documentation for more information on available options.
+
+
+[remote.github]
+owner = "nsyzrantsev"
+repo = "barkit"
+
+[changelog]
+# template for the changelog header
+header = """
+# Changelog\n
+All notable changes to this project will be documented in this file.\n
+"""
+# template for the changelog body
+# https://keats.github.io/tera/docs/#introduction
+body = """
+{%- macro remote_url() -%}
+  https://github.com/{{ remote.github.owner }}/{{ remote.github.repo }}
+{%- endmacro -%}
+
+{% macro print_commit(commit) -%}
+    - {% if commit.scope %}*({{ commit.scope }})* {% endif %}\
+        {% if commit.breaking %}[**breaking**] {% endif %}\
+        {{ commit.message | upper_first }} - \
+        ([{{ commit.id | truncate(length=7, end="") }}]({{ self::remote_url() }}/commit/{{ commit.id }}))\
+{% endmacro -%}
+
+{% if version %}\
+    {% if previous.version %}\
+        ## [{{ version | trim_start_matches(pat="v") }}]\
+          ({{ self::remote_url() }}/compare/{{ previous.version }}..{{ version }}) - {{ timestamp | date(format="%Y-%m-%d") }}
+    {% else %}\
+        ## [{{ version | trim_start_matches(pat="v") }}] - {{ timestamp | date(format="%Y-%m-%d") }}
+    {% endif %}\
+{% else %}\
+    ## [unreleased]
+{% endif %}\
+
+{% for group, commits in commits | group_by(attribute="group") %}
+    ### {{ group | striptags | trim | upper_first }}
+    {% for commit in commits
+    | filter(attribute="scope")
+    | sort(attribute="scope") %}
+        {{ self::print_commit(commit=commit) }}
+    {%- endfor -%}
+    {% raw %}\n{% endraw %}\
+    {%- for commit in commits %}
+        {%- if not commit.scope -%}
+            {{ self::print_commit(commit=commit) }}
+        {% endif -%}
+    {% endfor -%}
+{% endfor -%}
+{% raw %}\n{% endraw -%}
+"""
+# template for the changelog footer
+footer = """
+<!-- generated by git-cliff -->
+"""
+# remove the leading and trailing s
+trim = true
+# postprocessors
+postprocessors = [
+  { pattern = '<REPO>', replace = "https://github.com/nsyzrantsev/barkit" }, # replace repository URL
+]
+
+[git]
+# parse the commits based on https://www.conventionalcommits.org
+conventional_commits = true
+# filter out the commits that are not conventional
+filter_unconventional = true
+# process each line of a commit as an individual commit
+split_commits = false
+# regex for preprocessing the commit messages
+commit_preprocessors = [
+  # Replace issue numbers
+  { pattern = '\((\w+\s)?#([0-9]+)\)', replace = "([#${2}](<REPO>/issues/${2}))"},
+  # Check spelling of the commit with https://github.com/crate-ci/typos
+  # If the spelling is incorrect, it will be automatically fixed.
+  { pattern = '.*', replace_command = 'typos --write-changes -' },
+]
+# regex for parsing and grouping commits
+commit_parsers = [
+  { message = "^feat", group = "<!-- 0 -->🚀 Features" },
+  { message = "^fix", group = "<!-- 1 -->🐛 Bug Fixes" },
+  { message = "^doc", group = "<!-- 3 -->📚 Documentation" },
+  { message = "^perf", group = "<!-- 4 -->⚡ Performance" },
+  { message = "^refactor", group = "<!-- 2 -->🚜 Refactor" },
+  { message = "^style", group = "<!-- 5 -->🎨 Styling" },
+  { message = "^test", group = "<!-- 6 -->🧪 Testing" },
+  { message = "^chore\\(release\\): prepare for", skip = true },
+  { message = "^chore\\(deps.*\\)", skip = true },
+  { message = "^chore\\(pr\\)", skip = true },
+  { message = "^chore\\(pull\\)", skip = true },
+  { message = "^chore|^ci", group = "<!-- 7 -->⚙️ Miscellaneous Tasks" },
+  { body = ".*security", group = "<!-- 8 -->🛡️ Security" },
+  { message = "^revert", group = "<!-- 9 -->◀️ Revert" },
+]
+# filter out the commits that are not matched by commit parsers
+filter_commits = false
+# sort the tags topologically
+topo_order = false
+# sort the commits inside sections by oldest/newest order
+sort_commits = "newest"
diff --git a/extract/Cargo.toml b/extract/Cargo.toml
deleted file mode 100644
index d052a65..0000000
--- a/extract/Cargo.toml
+++ /dev/null
@@ -1,22 +0,0 @@
-[package]
-name = "extract"
-version = "0.1.0"
-edition = "2021"
-
-# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
-
-[dependencies]
-clap = { version = "4.5.4", features = ["derive", "env"] }
-flate2 = "1.0.30"
-regex = "1.10.4"
-seq_io = "0.3.2"
-thiserror = "1.0.61"
-rayon = "1.10.0"
-fancy-regex = "0.13.0"
-lz4 = "1.26.0"
-gzp = "0.11.3"
-indicatif = "0.17.8"
-console = "0.15.8"
-
-[dev-dependencies]
-rstest = "0.22.0"
diff --git a/release.sh b/release.sh
new file mode 100755
index 0000000..6c83be4
--- /dev/null
+++ b/release.sh
@@ -0,0 +1,47 @@
+#!/usr/bin/env bash
+
+if ! command -v typos &>/dev/null; then
+  echo "typos is not installed. Run 'cargo install typos-cli' to install it, otherwise the typos won't be fixed"
+fi
+
+if ! command -v git-cliff &>/dev/null; then
+  echo "git-cliff is not installed. Run 'cargo install git-cliff' to install it, otherwise the CHANGELOG.md won't be updated"
+fi
+
+if [ -z "$1" ]; then
+	echo "Please provide a tag."
+	echo "Usage: ./release.sh v[X.Y.Z]"
+	exit
+fi
+
+echo "Preparing $1..."
+
+# update the version
+msg="# managed by release.sh"
+sed -E -i "s/^version = .* $msg$/version = \"${1#v}\" $msg/" barkit*/Cargo.toml
+sed -E -i "s/^version = .* $msg$/version = \"${1#v}\" $msg/" Cargo.toml
+sed -E -i "s/(barkit-extract = \{ version = \")[^\"]+/\1${1#v}/" Cargo.toml
+
+# update the changelog
+git cliff --config cliff.toml --tag "$1" >CHANGELOG.md
+git add -A && git commit -m "chore(release): prepare for $1"
+git show
+
+# generate a changelog for the tag message
+export GIT_CLIFF_TEMPLATE="\
+	{% for group, commits in commits | group_by(attribute=\"group\") %}
+	{{ group | upper_first }}\
+	{% for commit in commits %}
+		- {% if commit.breaking %}(breaking) {% endif %}{{ commit.message | upper_first }} ({{ commit.id | truncate(length=7, end=\"\") }})\
+	{% endfor %}
+	{% endfor %}"
+changelog=$(git cliff --config examples/detailed.toml --unreleased --strip all)
+
+# create a signed tag
+git -c user.name="barkit" \
+	-c user.email="barkit-contributors@protonmail.com" \
+	-c user.signingkey="61C056A107882D500B82BA561094E39B2BF14539" \
+	tag -s -a "$1" -m "Release $1" -m "$changelog"
+git tag -v "$1"
+echo "Done!"
+echo "Now push the commit (git push) and the tag (git push --tags)."
\ No newline at end of file
diff --git a/rustfmt.yml b/rustfmt.yml
new file mode 100644
index 0000000..5c6ef4c
--- /dev/null
+++ b/rustfmt.yml
@@ -0,0 +1,15 @@
+edition = "2018"
+max_width = 85
+newline_style = "Unix"
+hard_tabs = true
+tab_spaces = 4
+use_field_init_shorthand = true
+reorder_imports = true
+binop_separator = "Back"
+format_code_in_doc_comments = true
+format_strings = true
+imports_layout = "Vertical"
+normalize_doc_attributes = true
+overflow_delimited_expr = true
+struct_field_align_threshold = 20
+wrap_comments = true
\ No newline at end of file
diff --git a/src/lib.rs b/src/lib.rs
index ae9a8d7..750d688 100644
--- a/src/lib.rs
+++ b/src/lib.rs
@@ -47,7 +47,7 @@ pub enum Commands {
         #[arg(short = 's', long, action=ArgAction::SetTrue)]
         skip_trimming: bool,
 
-        /// Max error (mistmatch) between provided pattern and read sequence
+        /// Max error (mismatch) between provided pattern and read sequence
         #[arg(short = 'e', long, default_value = "1")]
         max_error: usize,
 
diff --git a/src/main.rs b/src/main.rs
index 124d9f8..acaa0f7 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -20,11 +20,13 @@ fn main() {
             mgz,
             lz4,
             quiet,
-            force
+            force,
         } => {
             let output_compression =
-                extract::fastq::CompressionType::get_output_compression_type(gz, bgz, mgz, lz4);
-            extract::run::run(
+                barkit_extract::fastq::CompressionType::get_output_compression_type(
+                    gz, bgz, mgz, lz4,
+                );
+            barkit_extract::run::run(
                 fq1.to_string(),
                 fq2.clone(),
                 patterns.pattern1.clone(),
@@ -38,7 +40,7 @@ fn main() {
                 *max_error,
                 output_compression,
                 *quiet,
-                *force
+                *force,
             );
         }
     }
diff --git a/typos.toml b/typos.toml
new file mode 100644
index 0000000..9cd6455
--- /dev/null
+++ b/typos.toml
@@ -0,0 +1,5 @@
+[type.md]
+extend-ignore-re = [
+  "\\[[[:xdigit:]]{7}\\]\\(https://github.com/nsyzrantsev/barkit/commit/[[:xdigit:]]{40}\\)",
+  "\\[halp\\]\\(https://github.com/orhun/halp\\)",
+]
\ No newline at end of file