change dontrun to donttest

Author: nvelden

R/cluster_blast.R

@@ -205,7 +205,7 @@ synteny_score <- function(order1, order2, identity, i = 0.5) {
 #'   additional columns for BLAST results (identity, similarity).
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' path_to_folder <- "path/to/gbk/folder/"
 #' data_updated <- protein_blast(
 #'                          path_to_folder,

R/mummer_alignment.R

@@ -28,7 +28,7 @@
 #'   during processing.
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' # Basic alignment with default options
 #' mummer_alignment(
 #'   path = "/path/to/sequences",
@@ -362,7 +362,7 @@ parse_procmer <- function(path, reference, query){
 #' @return None explicitly, but writes the FASTA formatted data to a file.
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' genbank_to_fasta("path/to/input.gb")
 #' }
 #'