Update website

Author: nvelden

docs/404.html

@@ -1,16 +1,16 @@
 dependencies:
   - name: geneviewerwidget
-    version: 0.1.8
+    version: 0.1.10
     src: htmlwidgets
     script: geneviewerwidget.js
   - name: Themes
-    version: 0.1.8
+    version: 0.1.10
     src: htmlwidgets
-    script: ./lib/geneviewer-0.1.8/Themes.js
+    script: ./lib/geneviewer-0.1.10/Themes.js
   - name: geneviewer
-    version: 0.1.8
+    version: 0.1.10
     src: htmlwidgets
-    script: ./lib/geneviewer-0.1.8/geneviewer.js
+    script: ./lib/geneviewer-0.1.10/geneviewer.js
   - name: D3
     version: 7.8.5
     src: htmlwidgets

docs/LICENSE-text.html

@@ -351,8 +351,6 @@ function mergeOptions(defaultOptions, themeOptionsKey, userOptions) {
 function getColorScale(colorScheme, customColors, uniqueGroups) {
   let colorScale;
 
-  //customColors = { ...(customColors || {}), null: "#FFF" };
-
   const schemeCategory30 = [
     "#1f77b4", "#ff7f0e", "#2ca02c", "#d62728", "#9467bd",
     "#8c564b", "#e377c2", "#7f7f7f", "#bcbd22", "#17becf",
@@ -362,9 +360,18 @@ function getColorScale(colorScheme, customColors, uniqueGroups) {
     "#8c6d31", "#e7cb94", "#e7969c", "#7b4173", "#a55194"
   ];
 
-  // Check if customColors is an object and not an array
-  if (customColors && typeof customColors === 'object' && !Array.isArray(customColors)) {
-    // Create a color scale based on the customColors object
+  if (customColors && typeof customColors === "string") {
+    // Handle customColors as a single color
+    colorScale = d3.scaleOrdinal()
+      .domain(uniqueGroups)
+      .range(uniqueGroups.map(() => customColors));
+  } else if (customColors && Array.isArray(customColors)) {
+    // Handle customColors as an array
+    colorScale = d3.scaleOrdinal()
+      .domain(uniqueGroups)
+      .range(uniqueGroups.map((group, index) => customColors[index % customColors.length] || "#FFF"));
+  } else if (customColors && typeof customColors === 'object') {
+    // Handle customColors as an object
     colorScale = d3.scaleOrdinal()
       .domain(uniqueGroups)
       .range(uniqueGroups.map(group => customColors[group] || "#FFF"));
@@ -381,15 +388,18 @@ function getColorScale(colorScheme, customColors, uniqueGroups) {
       }
     }
   } else {
+    // Default to schemeCategory30
     colorScale = d3.scaleOrdinal(schemeCategory30)
       .domain(uniqueGroups)
       .range(uniqueGroups.map(group =>
         group === "No Hit" || group === null ? "#FFF" : schemeCategory30[uniqueGroups.indexOf(group) % schemeCategory30.length]
       ));
   }
+
   return colorScale;
 }
 
+
 function isInAnyDiscontinuity(value, breaks) {
   for (let gap of breaks) {
     if (value >= gap.start && value <= gap.end) {

docs/LICENSE.html

@@ -1,16 +1,16 @@
 dependencies:
   - name: geneviewerwidget
-    version: 0.1.8
+    version: 0.1.10
     src: htmlwidgets
     script: geneviewerwidget.js
   - name: Themes
-    version: 0.1.8
+    version: 0.1.10
     src: htmlwidgets
-    script: ./lib/geneviewer-0.1.8/Themes.js
+    script: ./lib/geneviewer-0.1.10/Themes.js
   - name: geneviewer
-    version: 0.1.8
+    version: 0.1.10
     src: htmlwidgets
-    script: ./lib/geneviewer-0.1.8/geneviewer.js
+    script: ./lib/geneviewer-0.1.10/geneviewer.js
   - name: D3
     version: 7.8.5
     src: htmlwidgets

docs/articles/BLASTP.html

@@ -351,8 +351,6 @@ function mergeOptions(defaultOptions, themeOptionsKey, userOptions) {
 function getColorScale(colorScheme, customColors, uniqueGroups) {
   let colorScale;
 
-  //customColors = { ...(customColors || {}), null: "#FFF" };
-
   const schemeCategory30 = [
     "#1f77b4", "#ff7f0e", "#2ca02c", "#d62728", "#9467bd",
     "#8c564b", "#e377c2", "#7f7f7f", "#bcbd22", "#17becf",
@@ -362,9 +360,18 @@ function getColorScale(colorScheme, customColors, uniqueGroups) {
     "#8c6d31", "#e7cb94", "#e7969c", "#7b4173", "#a55194"
   ];
 
-  // Check if customColors is an object and not an array
-  if (customColors && typeof customColors === 'object' && !Array.isArray(customColors)) {
-    // Create a color scale based on the customColors object
+  if (customColors && typeof customColors === "string") {
+    // Handle customColors as a single color
+    colorScale = d3.scaleOrdinal()
+      .domain(uniqueGroups)
+      .range(uniqueGroups.map(() => customColors));
+  } else if (customColors && Array.isArray(customColors)) {
+    // Handle customColors as an array
+    colorScale = d3.scaleOrdinal()
+      .domain(uniqueGroups)
+      .range(uniqueGroups.map((group, index) => customColors[index % customColors.length] || "#FFF"));
+  } else if (customColors && typeof customColors === 'object') {
+    // Handle customColors as an object
     colorScale = d3.scaleOrdinal()
       .domain(uniqueGroups)
       .range(uniqueGroups.map(group => customColors[group] || "#FFF"));
@@ -381,15 +388,18 @@ function getColorScale(colorScheme, customColors, uniqueGroups) {
       }
     }
   } else {
+    // Default to schemeCategory30
     colorScale = d3.scaleOrdinal(schemeCategory30)
       .domain(uniqueGroups)
       .range(uniqueGroups.map(group =>
         group === "No Hit" || group === null ? "#FFF" : schemeCategory30[uniqueGroups.indexOf(group) % schemeCategory30.length]
       ));
   }
+
   return colorScale;
 }
 
+
 function isInAnyDiscontinuity(value, breaks) {
   for (let gap of breaks) {
     if (value >= gap.start && value <= gap.end) {

docs/articles/BLASTP_files/D3-7.8.5/geneviewer.yaml

@@ -0,0 +1,26 @@
+dependencies:
+  - name: geneviewerwidget
+    version: 0.1.10
+    src: htmlwidgets
+    script: geneviewerwidget.js
+  - name: Themes
+    version: 0.1.10
+    src: htmlwidgets
+    script: ./lib/geneviewer-0.1.10/Themes.js
+  - name: geneviewer
+    version: 0.1.10
+    src: htmlwidgets
+    script: ./lib/geneviewer-0.1.10/geneviewer.js
+  - name: D3
+    version: 7.8.5
+    src: htmlwidgets
+    script: ./lib/D3-7.8.5/d3.min.js
+    stylesheet: ./lib/styles.css
+  - name: html2canvas
+    version: 1.4.1
+    src: htmlwidgets
+    script: ./lib/html2canvas-1.4.1/html2canvas.min.js
+  - name: FileSaver-2.0.4
+    version: 2.0.4
+    src: htmlwidgets
+    script: ./lib/FileSaver-2.0.4/FileSaver.min.js