chore: move to pixi

.gitattributes

@@ -0,0 +1,2 @@
+# GitHub syntax highlighting
+pixi.lock linguist-language=YAML linguist-generated=true

.github/workflows/codecov.yml

@@ -19,27 +19,14 @@ jobs:
         with:
           lfs: true
 
-      - name: Install miniconda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          miniconda-version: "latest"
-          auto-update-conda: true
-          python-version: "3.12"
-
-      - name: Initialize conda environment
-        run: make conda-create
-
-      - name: Setup conda
-        run: make conda-setup
-
-      - name: Install conda dependencies
-        run: make from-conda-lock
+      - name: Install pixi
+        uses: prefix-dev/[email protected]
 
-      - name: Install package dependencies
-        run: make install
+      - name: Setup environment
+        run: pixi install
 
-      - name: Run tests and coverage
-        run: make test
+      - name: Get test coverage
+        run: pixi run tests
 
       - name: Upload to Codecov
         uses: codecov/codecov-action@v4

.github/workflows/docs.yml

@@ -33,27 +33,14 @@ jobs:
         with:
           fetch-depth: 0
 
-      - name: Install miniconda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          miniconda-version: "latest"
-          auto-update-conda: true
-          python-version: "3.12"
-
-      - name: Initialize conda environment
-        run: make conda-create
-
-      - name: Setup conda
-        run: make conda-setup
-
-      - name: Install conda dependencies
-        run: make from-conda-lock
+      - name: Install pixi
+        uses: prefix-dev/[email protected]
 
-      - name: Install docs dependenices
-        run: make docs-env
+      - name: Setup environment
+        run: pixi install
 
       - name: Build documentation
-        run: make docs
+        run: pixi run docs
 
       - name: Setup Pages
         uses: actions/configure-pages@v5

.github/workflows/tests.yml

@@ -11,25 +11,16 @@ on:
 jobs:
   build:
     runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ["3.11"]
 
     steps:
       - name: Checkout repo
         uses: actions/checkout@v4
 
-      - name: Install miniconda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          miniconda-version: "latest"
-          auto-update-conda: true
-          python-version: ${{ matrix.python-version }}
+      - name: Install pixi
+        uses: prefix-dev/[email protected]
 
-      - name: Install package
-        run: |
-          pip install pytest pytest-cov pytest-html coverage colorama
-          pip install .
+      - name: Setup environment
+        run: pixi install
 
       - name: Run tests
-        run: pytest -c pyproject.toml --cov=vaxstats --cov-report=xml --junit-xml=report.xml --color=yes tests/
+        run: pixi run tests

.gitignore

@@ -629,3 +629,7 @@ psi.*.clean
 
 tests/tmp/*
 !tests/tmp/.gitkeep
+
+# pixi environments
+.pixi
+*.egg-info