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CARO has ~8k floating FBbt IDs #32

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cmungall opened this issue Aug 19, 2022 · 1 comment
Open

CARO has ~8k floating FBbt IDs #32

cmungall opened this issue Aug 19, 2022 · 1 comment

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@cmungall
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There are 8k FBbt nodes in CARO. They are CUNNINGLY HIDDEN as uncommitted rdf types which means they have been able to stay undetected - til now!

curl -L -s $OBO/caro.owl | egrep -A15 '<rdf:Desc.*FBbt'

    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FBbt_00000000">
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/fbbt#cur"/>
        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00000000</oboInOwl:id>
        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fly_anatomy.ontology</oboInOwl:hasOBONamespace>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/fbbt#EmbDevSlim"/>
    </rdf:Description>
    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FBbt_00000001">
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/fbbt#cur"/>
        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCBITaxon:7227</oboInOwl:hasDbXref>
        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Drosophila</oboInOwl:hasRelatedSynonym>
        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An individual member of the species Drosophila melanogaster.</obo:IAO_0000115>
        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">whole organism</oboInOwl:hasRelatedSynonym>
        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00000001</oboInOwl:id>
        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CARO:0000012</oboInOwl:hasDbXref>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/fbbt#EmbDevSlim"/>
        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fly_anatomy.ontology</oboInOwl:hasOBONamespace>
    </rdf:Description>
    <owl:Axiom>
        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00000001"/>
        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An individual member of the species Drosophila melanogaster.</owl:annotatedTarget>
        <oboInOwl:hasDbXref>FBC:DOS</oboInOwl:hasDbXref>
--

@balhoff
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balhoff commented Aug 19, 2022

The jig is up.

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