From 152ad45a02461a7fad806a4193bd2ba2cc4686df Mon Sep 17 00:00:00 2001 From: paolaroncaglia Date: Thu, 9 Sep 2021 12:41:36 +0200 Subject: [PATCH 1/2] New terms and edits for SCA Addresses #974 , #975 , #987 , #988 and #1254 --- src/ontology/cl-edit.owl | 89 +++++++++++++++++++++++++++++----------- 1 file changed, 64 insertions(+), 25 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 919a83499..ad0e12258 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -1924,8 +1924,11 @@ Declaration(Class(obo:CL_0009056)) Declaration(Class(obo:CL_0009057)) Declaration(Class(obo:CL_0009058)) Declaration(Class(obo:CL_0009059)) +Declaration(Class(obo:CL_0009060)) Declaration(Class(obo:CL_0009061)) +Declaration(Class(obo:CL_0009062)) Declaration(Class(obo:CL_0009063)) +Declaration(Class(obo:CL_0009064)) Declaration(Class(obo:CL_0009065)) Declaration(Class(obo:CL_0009066)) Declaration(Class(obo:CL_0010000)) @@ -3162,7 +3165,7 @@ SubClassOf(obo:CL_0000028 obo:CL_0000540) SubClassOf(obo:CL_0000028 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017)) SubClassOf(obo:CL_0000028 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000338)) -# Class: obo:CL_0000029 (neural crest derived neuron) +# Class: obo:CL_0000029 (neuron neural crest derived) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000029 "neuron neural crest derived"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000029 "cell"^^xsd:string) @@ -4124,7 +4127,7 @@ EquivalentClasses(obo:CL_0000118 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeV # Class: obo:CL_0000119 (cerebellar Golgi cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NIFSTD:sao1415726815"^^xsd:string) obo:IAO_0000115 obo:CL_0000119 "Large intrinsic neuron located in the granule layer of the cerebellar cortex that extends its dendrites into the molecular layer where they receive contact from parallel fibers. The axon of the Golgi cell enters ramifies densely in the granule layer and enters into a complex arrangement with mossy fiber terminals and granule cell dendrites to form the cerebellar glomerulus. Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th ed. 2004.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NIFSTD:sao1415726815"^^xsd:string) obo:IAO_0000115 obo:CL_0000119 "Large intrinsic neuron located in the granule layer of the cerebellar cortex that extends its dendrites into the molecular layer where they receive contact from parallel fibers. The axon of the Golgi cell ramifies densely in the granule layer and enters into a complex arrangement with mossy fiber terminals and granule cell dendrites to form the cerebellar glomerulus. Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th ed. 2004.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "Golgi cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "Golgi neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "cerebellar Golgi neuron") @@ -11002,16 +11005,19 @@ SubClassOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000843)) # Class: obo:CL_0000845 (marginal zone B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add"^^xsd:string) Annotation(oboInOwl:hasDbXref "GOC:dsd"^^xsd:string) Annotation(oboInOwl:hasDbXref "ISBN:0781735149"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:10933592"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:20933013"^^xsd:string) Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Marginal-zone_B_cell"^^xsd:string) obo:IAO_0000115 obo:CL_0000845 "A mature B cell that is located in the marginal zone of the spleen with the phenotype CD23-negative and CD21-positive and expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL. This cell type is also described as being CD19-positive, B220-positive, IgM-high, AA4-negative, CD35-high."^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "MZ B cell"^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "MZ B lymphocyte"^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "MZ B-cell"^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "MZ B-lymphocyte"^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "marginal zone B lymphocyte"^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "marginal zone B-cell"^^xsd:string) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "marginal zone B-lymphocyte"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "MZ B cell"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "MZ B lymphocyte"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "MZ B-cell"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "MZ B-lymphocyte"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "marginal zone B cell"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "marginal zone B lymphocyte"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "marginal zone B-cell"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000845 "marginal zone B-lymphocyte"^^xsd:string) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "B cell of marginal zone of spleen") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000845 "marginal zone of spleen B cell") AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000845 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000845 "MZ B cells are reportedly CD1-positive (mice), CD20-positive, CD48-positive, CD84-positive, CD150-positive, CD229-positive, and CD352-positive."^^xsd:string) -AnnotationAssertion(rdfs:label obo:CL_0000845 "marginal zone B cell"^^xsd:string) +AnnotationAssertion(rdfs:label obo:CL_0000845 "marginal zone B cell of spleen") EquivalentClasses(obo:CL_0000845 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742) ObjectSomeValuesFrom( obo:GO_0071753) ObjectSomeValuesFrom( obo:PR_000001880) ObjectSomeValuesFrom( obo:PR_000002037))) SubClassOf(Annotation(oboInOwl:is_inferred "true"^^xsd:string) obo:CL_0000845 obo:CL_0000785) @@ -14170,7 +14176,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true"^^xsd:string) obo:CL_0002037 ob # Class: obo:CL_0002038 (T follicular helper cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:19855402"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:20107805"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:22043829"^^xsd:string) obo:IAO_0000115 obo:CL_0002038 "A CD4-positive, CXCR5-positive, CCR7-negative alpha-beta T cell located in follicles of secondary lymph nodes that expresses is BCL6-high, ICOS-high and PD1-high, and stimulates follicular B cells to undergo class-switching and antibody production."^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:19855402"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:20107805"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:22043829"^^xsd:string) obo:IAO_0000115 obo:CL_0002038 "A CD4-positive, CXCR5-positive, CCR7-negative alpha-beta T cell located in follicles of secondary lymph nodes that is BCL6-high, ICOS-high and PD1-high, and stimulates follicular B cells to undergo class-switching and antibody production."^^xsd:string) AnnotationAssertion(oboInOwl:created_by obo:CL_0002038 "tmeehan"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002038 "2009-10-29T04:01:27Z"^^xsd:string) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20207847"^^xsd:string) oboInOwl:hasExactSynonym obo:CL_0002038 "T(FH)"^^xsd:string) @@ -22272,7 +22278,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009008 ) @@ -22296,7 +22302,7 @@ AnnotationAssertion(rdfs:label obo:CL_0009010 "transit amplifying cell") SubClassOf(obo:CL_0009010 obo:CL_0000003) SubClassOf(obo:CL_0009010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000034)) -# Class: obo:CL_0009011 (transit amplifying cell of colon) +# Class: obo:CL_0009011 (transit amplifying cell of large intestine) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20801415"^^xsd:string) Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-4183-8865"^^xsd:string) obo:IAO_0000115 obo:CL_0009011 "A rapidly proliferating population of cells that differentiate from stem cells of the intestinal crypt of the colon. Stem cells located in the crypts of Lieberkühn give rise to proliferating progenitor or transit amplifying cells that differentiate into the four major epithelial cell types. These include columnar absorptive cells or enterocytes, mucous secreting goblet cells, enteroendocrine cells and paneth cells.") AnnotationAssertion(oboInOwl:created_by obo:CL_0009011 ) @@ -22438,7 +22444,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009024 ) @@ -22572,7 +22578,7 @@ EquivalentClasses(obo:CL_0009036 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeV # Class: obo:CL_0009037 (lymph node mantle zone B cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:8011279"^^xsd:string) Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-4183-8865/"^^xsd:string) Annotation(oboInOwl:hasDbXref "https://www.arppress.org/v/vspfiles/assets/images/Chapter1T25LymphNodes.pdf") obo:IAO_0000115 obo:CL_0009037 "A B lymphocyte that resides in the mantle zone of the lymph node germinal center. These are generally IgM and IgD positive activated B cells that form a 'corona' around the germinal center and are part of the establishment of a secondary lymphatic follicule.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:8011279"^^xsd:string) Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-4183-8865/"^^xsd:string) Annotation(oboInOwl:hasDbXref "https://www.arppress.org/v/vspfiles/assets/images/Chapter1T25LymphNodes.pdf"^^xsd:string) obo:IAO_0000115 obo:CL_0009037 "A B lymphocyte that resides in the mantle zone of the lymph node germinal center. These are generally IgM and IgD positive activated B cells that form a 'corona' around the germinal center and are part of the establishment of a secondary lymphatic follicule.") AnnotationAssertion(oboInOwl:created_by obo:CL_0009037 ) AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0009037 "mantle zone B cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009037 "mantle zone B cell of lymph node") @@ -22679,13 +22685,14 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009048 ) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009049 "high endothelial venule smooth muscle cell") -AnnotationAssertion(rdfs:label obo:CL_0009049 "smooth muscle cell of high endothelial venule") -EquivalentClasses(obo:CL_0009049 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410037))) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0009049 "high endothelial venule smooth muscle cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009049 "high endothelial venule of lymph node smooth muscle cell") +AnnotationAssertion(rdfs:label obo:CL_0009049 "smooth muscle cell of high endothelial venule of lymph node") +EquivalentClasses(obo:CL_0009049 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410038))) # Class: obo:CL_0009050 (B cell of anorectum) @@ -22776,6 +22783,16 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009059 ) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0009060 "marginal zone B cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009060 "lymph node marginal zone B cell") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009060 ) +AnnotationAssertion(rdfs:label obo:CL_0009060 "marginal zone B cell of lymph node") +EquivalentClasses(obo:CL_0009060 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410065))) + # Class: obo:CL_0009061 (intestinal crypt stem cell of anorectum) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876"^^xsd:string) obo:IAO_0000115 obo:CL_0009061 "An intestinal crypt stem cell that is located in the anorectum.") @@ -22785,6 +22802,17 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009061 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009062 "T follicular helper cell of germinal center of lymph node") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009062 "T follicular helper cell of lymph node germinal center") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009062 "lymph node germinal center T follicular helper cell") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009062 ) +AnnotationAssertion(rdfs:label obo:CL_0009062 "germinal center T cell") +EquivalentClasses(obo:CL_0009062 ObjectIntersectionOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009039))) + # Class: obo:CL_0009063 (enteroendocrine cell of anorectum) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876"^^xsd:string) obo:IAO_0000115 obo:CL_0009063 "An enteroendocrine cell that is located in the anorectum.") @@ -22794,6 +22822,17 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009063 ) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0009064 "paracortex T cell") +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0009064 "paracortical T cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009064 "T cell of lymph node paracortex") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009064 ) +AnnotationAssertion(rdfs:label obo:CL_0009064 "lymph node paracortex T cell") +EquivalentClasses(obo:CL_0009064 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410066))) + # Class: obo:CL_0009065 (tuft cell of anorectum) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876"^^xsd:string) obo:IAO_0000115 obo:CL_0009065 "An intestinal tuft cell that is located in the anorectum.") @@ -22969,7 +23008,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0011002 "Need to MIREOT in 'spinal cord AnnotationAssertion(rdfs:label obo:CL_0011002 "lateral motor column neuron") SubClassOf(obo:CL_0011002 obo:CL_0011001) -# Class: obo:CL_0011003 (magnocellular neurosecretory cell) +# Class: obo:CL_0011003 (magnocellular neurosecretory cell (duplicate class)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:nv"^^xsd:string) Annotation(oboInOwl:hasDbXref "MP:0009467"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:10711808"^^xsd:string) obo:IAO_0000115 obo:CL_0011003 "A neurosecretory neuron residing mainly in the hypothalamic supraoptic and paraventricular nuclei and in a number of smaller accessory cell groups between these two nuclei, that is capable of secreting the hormones oxytocin or vasopressin, and sometimes both, into the systemic circulation.") AnnotationAssertion( obo:CL_0011003 "https://orcid.org/0000-0001-7258-9596") @@ -23233,7 +23272,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0011106 "This type of cell is found in m AnnotationAssertion(rdfs:label obo:CL_0011106 "GABAnergic interplexiform cell") EquivalentClasses(obo:CL_0011106 ObjectIntersectionOf(obo:CL_0011104 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) -# Class: obo:CL_0011107 (obsolete Muller cell) +# Class: obo:CL_0011107 (Muller cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:21911394"^^xsd:string) obo:IAO_0000115 obo:CL_0011107 "OBSOLETE: Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer.") AnnotationAssertion(obo:IAO_0100001 obo:CL_0011107 "CL:0000636") @@ -23275,7 +23314,7 @@ AnnotationAssertion(rdfs:label obo:CL_0011111 "gonadotropin releasing neuron") EquivalentClasses(obo:CL_0011111 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032274))) SubClassOf(obo:CL_0011111 obo:CL_0000540) -# Class: obo:CL_0011112 (obsolete magnocellular neurosecretory cell) +# Class: obo:CL_0011112 (magnocellular neurosecretory cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:10711808"^^xsd:string) obo:IAO_0000115 obo:CL_0011112 "OBSOLETE: Neurons part of the hypothalamic supraoptic and paraventricular nuclei that secrete the hormones, oxytocin and vasopressin into the systemic circulation from the posterior pituitary gland.") AnnotationAssertion(obo:IAO_0100001 obo:CL_0011112 "CL:0011003") @@ -27867,7 +27906,7 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000095 "CL:2000095"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_2000095 "cord blood hematopoietic stem cell"^^xsd:string) EquivalentClasses(obo:CL_2000095 ObjectIntersectionOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012168))) -# Class: obo:CL_2000096 (fibroblast of the reticular layer of dermis) +# Class: obo:CL_2000096 (reticular layer of dermis fibroblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie"^^xsd:string) obo:IAO_0000115 obo:CL_2000096 "Any fibroblast that is part of a reticular layer of dermis."^^xsd:string) AnnotationAssertion(oboInOwl:created_by obo:CL_2000096 "TermGenie"^^xsd:string) @@ -28948,4 +28987,4 @@ SubClassOf(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 obo:GO_0005634) SubClassOf(Annotation(oboInOwl:hasDbXref ) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031)) -) \ No newline at end of file +) From dd9597edaa156614e21934ab811789003186a020 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Thu, 9 Sep 2021 12:25:52 +0100 Subject: [PATCH 2/2] Revert wrong commits --- src/ontology/cl-edit.owl | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index ad0e12258..2dba03c0a 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3165,7 +3165,7 @@ SubClassOf(obo:CL_0000028 obo:CL_0000540) SubClassOf(obo:CL_0000028 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017)) SubClassOf(obo:CL_0000028 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000338)) -# Class: obo:CL_0000029 (neuron neural crest derived) +# Class: obo:CL_0000029 (neural crest derived neuron) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000029 "neuron neural crest derived"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000029 "cell"^^xsd:string) @@ -22278,7 +22278,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009008 ) @@ -22302,7 +22302,7 @@ AnnotationAssertion(rdfs:label obo:CL_0009010 "transit amplifying cell") SubClassOf(obo:CL_0009010 obo:CL_0000003) SubClassOf(obo:CL_0009010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000034)) -# Class: obo:CL_0009011 (transit amplifying cell of large intestine) +# Class: obo:CL_0009011 (transit amplifying cell of colon) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20801415"^^xsd:string) Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-4183-8865"^^xsd:string) obo:IAO_0000115 obo:CL_0009011 "A rapidly proliferating population of cells that differentiate from stem cells of the intestinal crypt of the colon. Stem cells located in the crypts of Lieberkühn give rise to proliferating progenitor or transit amplifying cells that differentiate into the four major epithelial cell types. These include columnar absorptive cells or enterocytes, mucous secreting goblet cells, enteroendocrine cells and paneth cells.") AnnotationAssertion(oboInOwl:created_by obo:CL_0009011 ) @@ -22444,7 +22444,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009024 ) @@ -23008,7 +23008,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0011002 "Need to MIREOT in 'spinal cord AnnotationAssertion(rdfs:label obo:CL_0011002 "lateral motor column neuron") SubClassOf(obo:CL_0011002 obo:CL_0011001) -# Class: obo:CL_0011003 (magnocellular neurosecretory cell (duplicate class)) +# Class: obo:CL_0011003 (magnocellular neurosecretory cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:nv"^^xsd:string) Annotation(oboInOwl:hasDbXref "MP:0009467"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:10711808"^^xsd:string) obo:IAO_0000115 obo:CL_0011003 "A neurosecretory neuron residing mainly in the hypothalamic supraoptic and paraventricular nuclei and in a number of smaller accessory cell groups between these two nuclei, that is capable of secreting the hormones oxytocin or vasopressin, and sometimes both, into the systemic circulation.") AnnotationAssertion( obo:CL_0011003 "https://orcid.org/0000-0001-7258-9596") @@ -23272,7 +23272,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0011106 "This type of cell is found in m AnnotationAssertion(rdfs:label obo:CL_0011106 "GABAnergic interplexiform cell") EquivalentClasses(obo:CL_0011106 ObjectIntersectionOf(obo:CL_0011104 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) -# Class: obo:CL_0011107 (Muller cell) +# Class: obo:CL_0011107 (obsolete Muller cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:21911394"^^xsd:string) obo:IAO_0000115 obo:CL_0011107 "OBSOLETE: Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer.") AnnotationAssertion(obo:IAO_0100001 obo:CL_0011107 "CL:0000636") @@ -23314,7 +23314,7 @@ AnnotationAssertion(rdfs:label obo:CL_0011111 "gonadotropin releasing neuron") EquivalentClasses(obo:CL_0011111 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032274))) SubClassOf(obo:CL_0011111 obo:CL_0000540) -# Class: obo:CL_0011112 (magnocellular neurosecretory cell) +# Class: obo:CL_0011112 (obsolete magnocellular neurosecretory cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:10711808"^^xsd:string) obo:IAO_0000115 obo:CL_0011112 "OBSOLETE: Neurons part of the hypothalamic supraoptic and paraventricular nuclei that secrete the hormones, oxytocin and vasopressin into the systemic circulation from the posterior pituitary gland.") AnnotationAssertion(obo:IAO_0100001 obo:CL_0011112 "CL:0011003") @@ -27906,7 +27906,7 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000095 "CL:2000095"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_2000095 "cord blood hematopoietic stem cell"^^xsd:string) EquivalentClasses(obo:CL_2000095 ObjectIntersectionOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012168))) -# Class: obo:CL_2000096 (reticular layer of dermis fibroblast) +# Class: obo:CL_2000096 (fibroblast of the reticular layer of dermis) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie"^^xsd:string) obo:IAO_0000115 obo:CL_2000096 "Any fibroblast that is part of a reticular layer of dermis."^^xsd:string) AnnotationAssertion(oboInOwl:created_by obo:CL_2000096 "TermGenie"^^xsd:string) @@ -28987,4 +28987,4 @@ SubClassOf(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 obo:GO_0005634) SubClassOf(Annotation(oboInOwl:hasDbXref ) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031)) -) +) \ No newline at end of file