diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 5d165a871..2a6512105 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2772,6 +2772,7 @@ Declaration(Class(obo:CL_4023031)) Declaration(Class(obo:CL_4023032)) Declaration(Class(obo:CL_4023033)) Declaration(Class(obo:CL_4023034)) +Declaration(Class(obo:CL_4023035)) Declaration(Class(obo:CL_4023036)) Declaration(Class(obo:CL_4023038)) Declaration(Class(obo:CL_4023039)) @@ -3220,7 +3221,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition") AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to") -# Annotation Property: obo:IAO_0000700 (preferred_root) +# Annotation Property: obo:IAO_0000700 (has ontology root term) AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root") @@ -3314,11 +3315,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym") AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference") -# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym) +# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym) AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym") -# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym) +# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym) AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym") @@ -29373,6 +29374,15 @@ AnnotationAssertion(rdfs:comment obo:CL_4023034 "Moved to PCL. Use PCL:1000002 i AnnotationAssertion(rdfs:label obo:CL_4023034 "obsolete L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)") AnnotationAssertion(owl:deprecated obo:CL_4023034 "true"^^xsd:boolean) +# Class: obo:CL_4023035 (lateral ganglionic eminence derived neuron) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "wikipediaversioned:Ganglionic_eminence&oldid=1186824360") obo:IAO_0000115 obo:CL_4023035 "A neuron that is derived from a precursor cell in the lateral ganglion eminence.") +AnnotationAssertion( obo:CL_4023035 "https://orcid.org/0000-0001-7258-9596") +AnnotationAssertion( obo:CL_4023035 "https://orcid.org/0000-0002-7073-9172") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10377350") oboInOwl:hasExactSynonym obo:CL_4023035 "LGE-derived neuron") +AnnotationAssertion(rdfs:label obo:CL_4023035 "lateral ganglionic eminence derived neuron"@en) +EquivalentClasses(obo:CL_4023035 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002202 obo:UBERON_0004025))) + # Class: obo:CL_4023036 (chandelier pvalb GABAergic cortical interneuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023036 "chandelier PV interneuron") diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index e475feeec..70bc4e9bd 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-01-16") + +Annotation(owl:versionInfo "2024-01-30") Declaration(Class()) Declaration(Class()) @@ -32,7 +32,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -101,6 +100,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -111,7 +111,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1615,7 +1614,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1733,8 +1731,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1866,12 +1862,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2347,7 +2341,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2357,7 +2350,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2644,8 +2636,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3176,7 +3166,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3658,7 +3647,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3858,7 +3846,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3883,8 +3870,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3906,8 +3891,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4146,8 +4129,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5629,6 +5610,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5667,7 +5649,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5727,8 +5708,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6011,7 +5990,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6094,6 +6072,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6284,16 +6265,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6332,7 +6309,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6365,15 +6341,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6524,6 +6496,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6534,11 +6507,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6566,6 +6539,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6864,6 +6838,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7049,9 +7024,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7213,8 +7185,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7434,7 +7404,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7671,9 +7640,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9987,6 +9953,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10745,6 +10712,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12410,6 +12378,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12765,6 +12734,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13019,6 +12989,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13451,6 +13424,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13698,7 +13672,13 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -14037,8 +14017,10 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -14091,9 +14073,9 @@ Declaration(AnnotationProperty() Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -14115,11 +14097,9 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -14228,6 +14208,9 @@ Declaration(AnnotationProperty(owl:deprecated)) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(Datatype(xsd:date)) ############################ # Annotation Properties @@ -14378,6 +14361,10 @@ AnnotationAssertion( "abbreviation") SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -14392,6 +14379,10 @@ AnnotationAssertion( "plural form") SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: (never in taxon) AnnotationAssertion( "tooth SubClassOf 'never in taxon' value 'Aves'") @@ -14565,6 +14556,10 @@ SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -14573,10 +14568,6 @@ SubAnnotationPropertyOf( ) -# Annotation Property: () - -SubAnnotationPropertyOf( ) - # Annotation Property: () SubAnnotationPropertyOf( ) @@ -14657,10 +14648,6 @@ SubAnnotationPropertyOf( ) -# Annotation Property: () - -SubAnnotationPropertyOf( ) - # Annotation Property: () SubAnnotationPropertyOf( ) @@ -14673,10 +14660,6 @@ SubAnnotationPropertyOf( ) -# Annotation Property: () - -SubAnnotationPropertyOf( ) - # Annotation Property: (a mis-spelling that is in common use and thus recorded) AnnotationAssertion(rdfs:label "a mis-spelling that is in common use and thus recorded") @@ -16239,8 +16222,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002203") +AnnotationAssertion( "uberon") +AnnotationAssertion( "develops_into") AnnotationAssertion( ) +AnnotationAssertion( "develops_into") AnnotationAssertion(rdfs:label "develops into"@en) +AnnotationAssertion(rdfs:label "develops into") SubObjectPropertyOf( ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -18736,26 +18724,26 @@ AnnotationAssertion(rdfs:label (transitively anteriorly connected to) -AnnotationAssertion(Annotation( "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern") ".") AnnotationAssertion( "uberon") AnnotationAssertion( "transitively_anteriorly_connected_to") AnnotationAssertion(rdfs:label "transitively anteriorly connected to") +AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"^^xsd:anyURI) TransitiveObjectProperty() # Object Property: (transitively distally connected to) -AnnotationAssertion(Annotation( "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern") ".") AnnotationAssertion( "uberon") AnnotationAssertion( "transitively_distally_connected_to") AnnotationAssertion(rdfs:label "transitively distally connected to") +AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"^^xsd:anyURI) TransitiveObjectProperty() # Object Property: (transitively proximally connected to) -AnnotationAssertion(Annotation( "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern") ".") AnnotationAssertion( "uberon") AnnotationAssertion( "transitively_proximally_connected_to") AnnotationAssertion(rdfs:label "transitively proximally connected to") +AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"^^xsd:anyURI) TransitiveObjectProperty() # Object Property: (trunk_part_of) @@ -23419,7 +23407,6 @@ AnnotationAssertion( "GO:0002537") AnnotationAssertion(rdfs:label "nitric oxide production involved in inflammatory response") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (arachidonic acid metabolite production involved in inflammatory response) @@ -28081,8 +28068,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -28134,8 +28121,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "RNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -28988,7 +28975,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules.") AnnotationAssertion(rdfs:label "transporter activity") SubClassOf( ) @@ -29353,7 +29340,7 @@ EquivalentClasses( ObjectIntersection # Class: (cellular_component) -AnnotationAssertion(Annotation( "GOC:pdt") "A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).") +AnnotationAssertion(Annotation( "GOC:pdt") "A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/17729"^^xsd:anyURI) AnnotationAssertion( "GO:0008372") AnnotationAssertion( "NIF_Subcellular:sao1337158144") @@ -29389,8 +29376,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'.") AnnotationAssertion(rdfs:label "extracellular region") SubClassOf( ) @@ -29488,7 +29475,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that for multicellular organisms, the extracellular space refers to everything outside a cell, but still within the organism (excluding the extracellular matrix). Gene products from a multi-cellular organism that are secreted from a cell into the interstitial fluid or blood can therefore be annotated to this term.") AnnotationAssertion(rdfs:label "extracellular space") SubClassOf( ) @@ -29589,8 +29576,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore.") AnnotationAssertion(rdfs:label "chromosome") SubClassOf( ) @@ -29627,8 +29614,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cytoplasm") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -29790,8 +29777,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ribosome") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -29813,8 +29800,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cytoskeleton") SubClassOf( ) @@ -29922,8 +29909,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "plasma membrane") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -30090,8 +30077,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "carbohydrate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -30279,8 +30266,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "generation of precursor metabolites and energy") SubClassOf( ) @@ -30417,8 +30404,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA recombination") SubClassOf( ) @@ -30521,7 +30508,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "translation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -30697,13 +30684,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amino acid metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (regulation of cellular amino acid metabolic process) @@ -30815,7 +30800,7 @@ AnnotationAssertion( "GO:0006575") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular modified amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -30916,8 +30901,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lipid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -31165,27 +31150,16 @@ EquivalentClasses( ObjectIntersection # Class: (nitrogen compound metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "nitrogen compound metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006807") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nitrogen compound metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (nitric oxide biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.") -AnnotationAssertion( "nitric oxide anabolism") -AnnotationAssertion( "nitric oxide biosynthesis") -AnnotationAssertion( "nitric oxide formation") -AnnotationAssertion( "nitric oxide synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0006809") -AnnotationAssertion(rdfs:label "nitric oxide biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (transport) AnnotationAssertion(Annotation( "GOC:dos") Annotation( "GOC:dph") Annotation( "GOC:jl") Annotation( "GOC:mah") "The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or a transporter complex, a pore or a motor protein.") @@ -31204,7 +31178,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term, for e.g. to transmembrane transport, to microtubule-based transport or to vesicle-mediated transport.") AnnotationAssertion(rdfs:label "transport") SubClassOf( ) @@ -31397,7 +31371,7 @@ AnnotationAssertion( "GOC:al") "copper-induced intracellular protein transport") AnnotationAssertion( "GO:0006886") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intracellular protein transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) @@ -31839,8 +31813,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cytoskeleton organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -32056,8 +32030,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chromosome segregation") SubClassOf( ) SubClassOf( ) @@ -32218,7 +32192,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell adhesion") SubClassOf( ) @@ -32264,7 +32238,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "establishment or maintenance of cell polarity") SubClassOf( ) @@ -32697,29 +32671,6 @@ AnnotationAssertion(rdfs:label "bord EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (ovarian nurse cell to oocyte transport) - -AnnotationAssertion(Annotation( "GOC:mtg_sensu") Annotation( "ISBN:0879694238") "Transfer of constituents synthesized in the ovarian nurse cells to the oocyte, through the ring canals, as the egg chamber is growing. An example of this is found in Drosophila melanogaster.") -AnnotationAssertion( "nurse cell to oocyte transport") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0007300") -AnnotationAssertion(rdfs:label "ovarian nurse cell to oocyte transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (cytoplasmic transport, nurse cell to oocyte) - -AnnotationAssertion(Annotation( "ISBN:0879694238") "The directed movement of cytoplasmic constituents synthesized in the nurse cells to the oocyte.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0007303") -AnnotationAssertion(rdfs:label "cytoplasmic transport, nurse cell to oocyte") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (oocyte construction) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:ems") Annotation( "GOC:mtg_sensu") Annotation( "GOC:tb") Annotation( "ISBN:0198506732") "The synthesis, deposition, and organization of the materials in a cell of an ovary; where the cell can then undergo meiosis and form an ovum. An example of this is found in Drosophila melanogaster.") @@ -33434,7 +33385,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0007596") AnnotationAssertion(rdfs:label "blood coagulation") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -33700,8 +33651,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cytoskeletal protein binding") SubClassOf( ) @@ -33916,7 +33867,7 @@ AnnotationAssertion( "necrosis") AnnotationAssertion( "GO:0008219") AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation, it is currently kept in GO as a placeholder for describing cell death phenotypes in uPHENO. When information is provided on a programmed cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Unintentional cell death, i.e. cell death caused by injury, ageing, or cell phenotypes observed as a result of a pathological mutation in an essential gene should NOT be annotated using GO terms.") +AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation, it is currently kept in GO as a placeholder for describing cell death phenotypes in uPHENO. When information is provided on a programmed cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Unintentional cell death, i.e. cell death caused by injury, ageing, or cell phenotypes observed as a result of a pathological mutation in an essential gene should NOT be annotated using GO terms.") AnnotationAssertion(rdfs:label "cell death") SubClassOf( ) @@ -34032,8 +33983,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lipid binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -34378,21 +34329,6 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "hexose transmembrane transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -# Class: (amino acid biosynthetic process) - -AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/17904"^^xsd:anyURI) -AnnotationAssertion( "Wikipedia:Amino_acid_synthesis") -AnnotationAssertion( "amino acid anabolism") -AnnotationAssertion( "amino acid biosynthesis") -AnnotationAssertion( "amino acid formation") -AnnotationAssertion( "amino acid synthesis") -AnnotationAssertion( "cellular amino acid biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0008652") -AnnotationAssertion(rdfs:label "amino acid biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (catabolic process) AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.") @@ -34475,19 +34411,6 @@ SubClassOf( ) SubClassOf( ) -# Class: (amino acid catabolic process) - -AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/17904"^^xsd:anyURI) -AnnotationAssertion( "amino acid breakdown") -AnnotationAssertion( "amino acid catabolism") -AnnotationAssertion( "amino acid degradation") -AnnotationAssertion( "cellular amino acid catabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0009063") -AnnotationAssertion(rdfs:label "amino acid catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (glutamine family amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline.") @@ -36977,7 +36900,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term should be used to annotate gene products in the organism undergoing the programmed cell death. To annotate genes in another organism whose products modulate programmed cell death in a host organism, consider the term 'modulation by symbiont of host programmed cell death ; GO:0052040'. Also, note that 'programmed cell death ; GO:0012501' should be used to refer to instances of caspase-independent cell death mechanisms, in the absence of further indications on the process taking place. At present, caspase-independent cell death is not yet represented in GO due to the lack of consensus and in-depth research on the topic. 'programmed cell death ; GO:0012501' may also be used to annotate gene products in taxa where apoptosis as defined in GO:0006915 does not occur, such as plants. You may also consider these specific children: GO:0097468 'programmed cell death in response to reactive oxygen species' (with descendants GO:0010421 'hydrogen peroxide-mediated programmed cell death' and GO:0010343 'singlet oxygen-mediated programmed cell death'), and GO:0009626 'plant-type hypersensitive response' and its children.") AnnotationAssertion(rdfs:label "programmed cell death") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -38706,7 +38629,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "photosynthesis") SubClassOf( ) SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) @@ -38933,7 +38856,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "RNA metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -39112,6 +39035,7 @@ DisjointClasses( ObjectSomeValuesFrom # Class: (cytosolic transport) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of substances or organelles within the cytosol.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26386"^^xsd:anyURI) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0016482") AnnotationAssertion(rdfs:label "cytosolic transport") @@ -39226,8 +39150,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "transferase activity") SubClassOf( ) @@ -39275,8 +39199,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hydrolase activity") SubClassOf( ) @@ -39759,7 +39683,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0019722") AnnotationAssertion(rdfs:label "calcium-mediated signaling") -SubClassOf( ) +SubClassOf( ) # Class: (B cell mediated immunity) @@ -39799,7 +39723,7 @@ AnnotationAssertion( "GO:0019730") AnnotationAssertion(rdfs:label "antimicrobial humoral response") SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (secondary metabolic process) @@ -39817,14 +39741,6 @@ AnnotationAssertion( "secondary metabolic process") SubClassOf( ) -# Class: (cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte) - -AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of substances along cytoskeletal elements, such as microfilaments or microtubules, from a nurse cell to an oocyte.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0019749") -AnnotationAssertion(rdfs:label "cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte") -EquivalentClasses( ObjectIntersectionOf( )) - # Class: (carboxylic acid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).") @@ -39926,21 +39842,6 @@ AnnotationAssertion( "antigen processing and presentation of exogenous antigen") SubClassOf( ) -# Class: (second-messenger-mediated signaling) - -AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "ISBN:0815316194") Annotation( "PMID:15221855") Annotation( "Wikipedia:Second_messenger_system") "Any intracellular signal transduction in which the signal is passed on within the cell via a second messenger; a small molecule or ion that can be quickly generated or released from intracellular stores, and can diffuse within the cell. Second-messenger signaling includes production or release of the second messenger, and effectors downstream of the second messenger that further transmit the signal within the cell.") -AnnotationAssertion( "second messenger mediated signaling") -AnnotationAssertion( "second messenger mediated signalling") -AnnotationAssertion( "second messenger-mediated signaling") -AnnotationAssertion( "second messenger-mediated signalling") -AnnotationAssertion(Annotation( "GOC:signaling") "second-messenger-mediated signal transduction") -AnnotationAssertion( "second-messenger-mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0019932") -AnnotationAssertion(rdfs:label "second-messenger-mediated signaling") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (sexual reproduction) AnnotationAssertion(Annotation( "Wikipedia:Sexual_reproduction") "A type of reproduction that combines the genetic material of two gametes (such as a sperm or egg cell or fungal spores). The gametes have an haploid genome (with a single set of chromosomes, the product of a meiotic division) and combines with one another to produce a zygote (diploid).") @@ -42748,8 +42649,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.") AnnotationAssertion(rdfs:label "signaling") SubClassOf( ) @@ -42856,7 +42757,7 @@ AnnotationAssertion( "GOC:mah") "cell projection organization and biogenesis") AnnotationAssertion(Annotation( "GOC:mah") "cell surface structure organization and biogenesis") AnnotationAssertion( "GO:0030030") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell projection organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -43122,7 +43023,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.") AnnotationAssertion(rdfs:label "protein catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -43187,25 +43088,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) -# Class: (nitric oxide transmembrane transporter activity) - -AnnotationAssertion(Annotation( "GOC:mah") "Enables the transfer of nitric oxide, nitrogen monoxide, from one side of a membrane to the other.") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0030184") -AnnotationAssertion(rdfs:label "nitric oxide transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (nitric oxide transport) - -AnnotationAssertion(Annotation( "GOC:mah") "The directed movement of nitric oxide, nitrogen monoxide, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0030185") -AnnotationAssertion(rdfs:label "nitric oxide transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (melatonin metabolic process) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving melatonin (N-acetyl-5-methoxytryptamine).") @@ -44570,7 +44452,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "extracellular matrix") SubClassOf( ) DisjointClasses( ) @@ -49891,18 +49773,6 @@ AnnotationAssertion( "granzyme B localization to T cell secretory granule") SubClassOf( ) -# Class: (intracellular nitric oxide homeostasis) - -AnnotationAssertion(Annotation( "GOC:mah") "A homeostatic process involved in the maintenance of a steady state level of nitric oxide within a cell.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24224"^^xsd:anyURI) -AnnotationAssertion( "NO homeostasis") -AnnotationAssertion( "nitric oxide homeostasis") -AnnotationAssertion( "cellular nitric oxide homeostasis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033484") -AnnotationAssertion(rdfs:label "intracellular nitric oxide homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (carbohydrate homeostasis) AnnotationAssertion(Annotation( "GOC:mah") "A homeostatic process involved in the maintenance of an internal steady state of a carbohydrate within an organism or cell.") @@ -50642,9 +50512,11 @@ SubClassOf( ObjectSomeValuesFrom( (cellular nitrogen compound metabolic process) AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "cellular nitrogen compound metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0034641") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular nitrogen compound metabolic process") SubClassOf( ) @@ -51596,15 +51468,11 @@ AnnotationAssertion( "GO:0007243") AnnotationAssertion( "GO:0023013") AnnotationAssertion( "GO:0023034") -AnnotationAssertion(Annotation( "ISBN:3527303782") "intracellular signaling chain") -AnnotationAssertion(Annotation( "GOC:signaling") "intracellular protein kinase cascade") AnnotationAssertion( "intracellular signal transduction pathway") -AnnotationAssertion(Annotation( "GOC:signaling") "protein kinase cascade") AnnotationAssertion( "signal transmission via intracellular cascade") AnnotationAssertion( "biological_process") AnnotationAssertion(Annotation( "GOC:signaling") "intracellular signaling cascade") AnnotationAssertion( "intracellular signaling pathway") -AnnotationAssertion( "signal transduction via intracellular signaling cascade") AnnotationAssertion( "GO:0035556") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intracellular signal transduction") @@ -52921,7 +52789,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein modification process") SubClassOf( ) SubClassOf( ) @@ -54262,7 +54130,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ribosome biogenesis") SubClassOf( ) @@ -55574,7 +55442,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell projection") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -55797,21 +55665,10 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0043062") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "extracellular structure organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (intercellular bridge organization) - -AnnotationAssertion(Annotation( "GOC:jid") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the intracellular bridge. An intracellular bridge is a direct link between the cytoplasms of sister cells that allows cells to communicate with one another.") -AnnotationAssertion( "intercellular bridge organisation") -AnnotationAssertion( "biological_process") -AnnotationAssertion(Annotation( "GOC:mah") "intercellular bridge organization and biogenesis") -AnnotationAssertion( "GO:0043063") -AnnotationAssertion(rdfs:label "intercellular bridge organization") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (positive regulation of apoptotic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:mtg_apoptosis") "Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.") @@ -56033,6 +55890,7 @@ EquivalentClasses( ObjectIntersection # Class: (macromolecule metabolic process) AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "GO:0034960") AnnotationAssertion( "GO:0043283") AnnotationAssertion( "GO:0044259") @@ -56042,6 +55900,7 @@ AnnotationAssertion( "multicellular organismal macromolecule metabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043170") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "macromolecule metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -56162,7 +56021,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organelle") SubClassOf( ) @@ -57891,9 +57750,11 @@ SubClassOf( (primary metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "http://www.metacyc.org") "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "primary metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044238") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "primary metabolic process") SubClassOf( ) @@ -58019,7 +57880,7 @@ AnnotationAssertion( AnnotationAssertion( "small molecule biosynthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044283") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides.") AnnotationAssertion(rdfs:label "small molecule biosynthetic process") SubClassOf( ) @@ -58269,22 +58130,6 @@ AnnotationAssertion( "chitosome") SubClassOf( ) -# Class: (negative regulation of nitric oxide biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.") -AnnotationAssertion( "down regulation of nitric oxide biosynthetic process") -AnnotationAssertion( "down-regulation of nitric oxide biosynthetic process") -AnnotationAssertion( "downregulation of nitric oxide biosynthetic process") -AnnotationAssertion( "negative regulation of nitric oxide anabolism") -AnnotationAssertion( "negative regulation of nitric oxide biosynthesis") -AnnotationAssertion( "negative regulation of nitric oxide formation") -AnnotationAssertion( "negative regulation of nitric oxide synthesis") -AnnotationAssertion( "inhibition of nitric oxide biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0045019") -AnnotationAssertion(rdfs:label "negative regulation of nitric oxide biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (plasma membrane fusion) AnnotationAssertion(Annotation( "GOC:elh") Annotation( "GOC:mtg_muscle") "The joining of the lipid bilayer membrane that surround a cell with that of another cell, producing a single cell.") @@ -58397,7 +58242,7 @@ AnnotationAssertion( "GO:0045087") AnnotationAssertion(rdfs:label "innate immune response") SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (regulation of innate immune response) @@ -58550,24 +58395,6 @@ AnnotationAssertion( "cell-cell signaling involved in cell fate commitment") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (intercellular bridge) - -AnnotationAssertion(Annotation( "PMID:9635420") "A direct connection between the cytoplasm of two cells that is formed following the completion of cleavage furrow ingression during cell division. They are usually present only briefly prior to completion of cytokinesis. However, in some cases, such as the bridges between germ cells during their development, they become stabilised.") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "GO:0045171") -AnnotationAssertion(rdfs:label "intercellular bridge") -SubClassOf( ) - -# Class: (germline ring canal) - -AnnotationAssertion(Annotation( "GOC:mtg_sensu") Annotation( "PMID:9635420") Annotation( "PMID:9655801") "Germline specific intercellular bridge. During cyst formation in insects, ring canals interconnect the cells of the cyst, facilitating the passage of cytoplasmic components between cells.") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "GO:0045172") -AnnotationAssertion(rdfs:label "germline ring canal") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectAllValuesFrom( )) - # Class: (establishment of protein localization) AnnotationAssertion(Annotation( "GOC:bf") "The directed movement of a protein to a specific location.") @@ -58851,35 +58678,6 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectAllValuesFrom( )) -# Class: (regulation of nitric oxide biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.") -AnnotationAssertion( "regulation of nitric oxide anabolism") -AnnotationAssertion( "regulation of nitric oxide biosynthesis") -AnnotationAssertion( "regulation of nitric oxide formation") -AnnotationAssertion( "regulation of nitric oxide synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0045428") -AnnotationAssertion(rdfs:label "regulation of nitric oxide biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of nitric oxide biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.") -AnnotationAssertion( "positive regulation of nitric oxide anabolism") -AnnotationAssertion( "positive regulation of nitric oxide biosynthesis") -AnnotationAssertion( "positive regulation of nitric oxide formation") -AnnotationAssertion( "positive regulation of nitric oxide synthesis") -AnnotationAssertion( "up regulation of nitric oxide biosynthetic process") -AnnotationAssertion( "up-regulation of nitric oxide biosynthetic process") -AnnotationAssertion( "upregulation of nitric oxide biosynthetic process") -AnnotationAssertion( "activation of nitric oxide biosynthetic process") -AnnotationAssertion( "stimulation of nitric oxide biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0045429") -AnnotationAssertion(rdfs:label "positive regulation of nitric oxide biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (juvenile hormone secretion) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198547684") "The regulated release of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis.") @@ -62130,27 +61928,6 @@ AnnotationAssertion( "phenol-containing compound biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (nitric oxide metabolic process) - -AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.") -AnnotationAssertion( "nitric oxide metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0046209") -AnnotationAssertion(rdfs:label "nitric oxide metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (nitric oxide catabolic process) - -AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.") -AnnotationAssertion( "nitric oxide breakdown") -AnnotationAssertion( "nitric oxide catabolism") -AnnotationAssertion( "nitric oxide degradation") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0046210") -AnnotationAssertion(rdfs:label "nitric oxide catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (ecdysteroid catabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development.") @@ -63033,11 +62810,13 @@ EquivalentClasses( ObjectIntersection # Class: (hydroxyapatite binding) AnnotationAssertion(Annotation( "PMID:2438276") "Binding to hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentin.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21211"^^xsd:anyURI) AnnotationAssertion(Annotation( "GOC:vk") "hydroxylapatite binding") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0046848") AnnotationAssertion(rdfs:label "hydroxyapatite binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) # Class: (bone remodeling) @@ -64403,9 +64182,11 @@ SubClassOf( (developmental cell growth) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:isa_complete") "The growth of a cell, where growth contributes to the progression of the cell over time from one condition to another.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "developmental growth of a unicellular organism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048588") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "developmental cell growth") SubClassOf( ) SubClassOf( ) @@ -65588,9 +65369,11 @@ SubClassOf( ObjectSomeValuesFrom( (anatomical structure development) AnnotationAssertion(Annotation( "GO_REF:0000021") "The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "development of an anatomical structure") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048856") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -65680,7 +65463,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell motility") SubClassOf( ) @@ -67294,7 +67077,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "response to stimulus") SubClassOf( ) @@ -69375,11 +69158,13 @@ SubClassOf( (epinephrine binding) AnnotationAssertion(Annotation( "GOC:ai") "Binding to epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21211"^^xsd:anyURI) AnnotationAssertion( "adrenaline binding") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0051379") AnnotationAssertion(rdfs:label "epinephrine binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) # Class: (norepinephrine binding) @@ -69822,8 +69607,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein maturation") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -71804,7 +71589,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "molecular transducer activity") SubClassOf( ) @@ -71820,7 +71605,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "molecular adaptor activity") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -75711,7 +75496,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "membrane organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -78969,7 +78754,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein-containing complex assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -79895,6 +79680,18 @@ AnnotationAssertion( "regulation of microtubule cytoskeleton organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (calcium ion import) + +AnnotationAssertion(Annotation( "GOC:mah") "The directed movement of calcium ions into a cell or organelle.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/23015"^^xsd:anyURI) +AnnotationAssertion(Annotation( "GOC:mah") "calcium ion uptake") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:tb") "transmembrane calcium influx") +AnnotationAssertion( "GO:0070509") +AnnotationAssertion(rdfs:label "calcium ion import") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (protein secretion by platelet) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:mah") "The regulated release of proteins by a platelet or group of platelets.") @@ -80395,17 +80192,6 @@ AnnotationAssertion( "cellular response to amino acid stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular response to inorganic substance) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.") -AnnotationAssertion( "mah") -AnnotationAssertion( "2009-12-03T02:35:49Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0071241") -AnnotationAssertion(rdfs:label "cellular response to inorganic substance") -SubClassOf( ) -SubClassOf( ) - # Class: (cellular response to ammonium ion) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000071") Annotation( "PMID:23509267") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ammonium stimulus.") @@ -80998,6 +80784,7 @@ EquivalentClasses( ObjectIntersection # Class: (organic substance metabolic process) AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "mah") AnnotationAssertion( "2010-03-08T03:32:18Z") AnnotationAssertion( "organic molecular entity metabolic process") @@ -81005,6 +80792,7 @@ AnnotationAssertion( "organic substance metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071704") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organic substance metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -81085,27 +80873,6 @@ AnnotationAssertion(rdfs:label "base EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (response to nitric oxide) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:yaf") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.") -AnnotationAssertion( "mah") -AnnotationAssertion( "2010-03-17T04:03:38Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0071731") -AnnotationAssertion(rdfs:label "response to nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (cellular response to nitric oxide) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:yaf") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.") -AnnotationAssertion( "mah") -AnnotationAssertion( "2010-03-17T04:12:52Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0071732") -AnnotationAssertion(rdfs:label "cellular response to nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (IgG immunoglobulin complex) AnnotationAssertion(Annotation( "GOC:add") Annotation( "ISBN:0781765196") "A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgG immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.") @@ -81514,13 +81281,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nitrogen cycle metabolic process") SubClassOf( ) # Class: (cell periphery) -AnnotationAssertion(Annotation( "GOC:pdt") "The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.") +AnnotationAssertion(Annotation( "GOC:pdt") "The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.") AnnotationAssertion( "mah") AnnotationAssertion( "2010-10-04T01:51:47Z") AnnotationAssertion( "cellular_component") @@ -84306,7 +84073,7 @@ AnnotationAssertion(Annotation( "protein localization in membrane") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0072657") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein localization to membrane") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -84562,16 +84329,6 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (regulation of nitric oxide metabolic process) - -AnnotationAssertion(Annotation( "GOC:DHL") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.") -AnnotationAssertion( "dhl") -AnnotationAssertion( "2010-09-23T04:02:50Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0080164") -AnnotationAssertion(rdfs:label "regulation of nitric oxide metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (lytic vacuole organization) AnnotationAssertion(Annotation( "PMID:20729380") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lytic vacuole.") @@ -85536,6 +85293,39 @@ SubClassOf( ) SubClassOf( ) +# Class: (regulation of calcium ion import) + +AnnotationAssertion(Annotation( "GOC:BHF") "Any process that modulates the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle.") +AnnotationAssertion( "tb") +AnnotationAssertion( "2010-02-08T05:11:20Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:tb") "regulation of transmembrane calcium influx") +AnnotationAssertion( "GO:0090279") +AnnotationAssertion(rdfs:label "regulation of calcium ion import") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of calcium ion import) + +AnnotationAssertion(Annotation( "GOC:BHF") "Any process that increases the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle.") +AnnotationAssertion( "tb") +AnnotationAssertion( "2010-02-08T05:11:20Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:tb") "positive regulation of transmembrane calcium influx") +AnnotationAssertion( "GO:0090280") +AnnotationAssertion(rdfs:label "positive regulation of calcium ion import") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of calcium ion import) + +AnnotationAssertion(Annotation( "GOC:BHF") "Any process that decreases the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle.") +AnnotationAssertion( "tb") +AnnotationAssertion( "2010-02-08T05:11:20Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:tb") "negative regulation of transmembrane calcium influx") +AnnotationAssertion( "GO:0090281") +AnnotationAssertion(rdfs:label "negative regulation of calcium ion import") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of osteoclast proliferation) AnnotationAssertion(Annotation( "GOC:tb") "Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population.") @@ -86954,7 +86744,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0098542") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "defense response to other organism") SubClassOf( ) @@ -87025,7 +86815,7 @@ AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0098631") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell adhesion mediator activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -87044,10 +86834,12 @@ SubClassOf( (collagen fibril binding) AnnotationAssertion(Annotation( "GOC:dos") Annotation( "PMID:21421911") "Binding to a collagen fibril.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21211"^^xsd:anyURI) AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0098633") AnnotationAssertion(rdfs:label "collagen fibril binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) # Class: (protein complex involved in cell-cell adhesion) @@ -87222,6 +87014,7 @@ EquivalentClasses( ObjectIntersection # Class: (calcium ion import across plasma membrane) AnnotationAssertion(Annotation( "GOC:dos") "The directed movement of calcium ions from outside of a cell, across the plasma membrane and into the cytosol.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24965"^^xsd:anyURI) AnnotationAssertion( "mah") AnnotationAssertion( "2013-02-07T13:07:59Z") AnnotationAssertion( "GO:1990035") @@ -87231,6 +87024,8 @@ AnnotationAssertion( "GO:0098703") AnnotationAssertion(rdfs:label "calcium ion import across plasma membrane") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (carbohydrate import across plasma membrane) @@ -87341,6 +87136,7 @@ AnnotationAssertion( "GO:0098739") AnnotationAssertion(rdfs:label "import across plasma membrane") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) # Class: (cerebellar neuron development) @@ -87369,7 +87165,7 @@ AnnotationAssertion( "GO:0098754") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "detoxification") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -87702,36 +87498,6 @@ AnnotationAssertion(rdfs:label "retr EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (retrograde trans-synaptic signaling by soluble gas) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by an soluble gas ligand.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0098923") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "retrograde trans-synaptic signaling by soluble gas") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (retrograde trans-synaptic signaling by nitric oxide) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by nitric oxide.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0098924") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "retrograde trans-synaptic signaling by nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission) - -AnnotationAssertion(Annotation( "GOC:dos") "Modulation of synaptic transmission by cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by nitric oxide.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0098925") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.") -AnnotationAssertion(rdfs:label "retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (postsynaptic signal transduction) AnnotationAssertion(Annotation( "GOC:dos") "Signal transduction in which the initial step occurs in a postsynapse.") @@ -87795,15 +87561,6 @@ AnnotationAssertion( "anterograde dendritic transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -# Class: (anterograde trans-synaptic signaling by nitric oxide) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling from presynapse to postynapse, across the synaptic cleft, mediated by nitric oxide.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0098940") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "anterograde trans-synaptic signaling by nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - # Class: (postsynaptic neurotransmitter receptor activity) AnnotationAssertion(Annotation( "GOC:dos") Annotation( "GOC:signaling") "Neurotransmitter receptor activity occuring in the postsynaptic membrane during synaptic transmission.") @@ -88183,15 +87940,6 @@ AnnotationAssertion( "postsynaptic intermediate filament cytoskeleton") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (synaptic signaling by nitric oxide) - -AnnotationAssertion(Annotation( "GOC:dos") Annotation( "PMID:19038221") "Cell-cell signaling to or from a synapse, mediated by nitric oxide.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0099163") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "synaptic signaling by nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (postsynaptic modulation of chemical synaptic transmission) AnnotationAssertion(Annotation( "GOC:dos") "Any process, acting in the postsynapse that results in modulation of chemical synaptic transmission.") @@ -88537,15 +88285,6 @@ AnnotationAssertion( "trans-synaptic signaling by lipid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (trans-synaptic signaling by soluble gas) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling between presynapse and postsynapse mediated by a soluble gas ligand crossing the synaptic cleft.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0099543") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "trans-synaptic signaling by soluble gas") -SubClassOf( ) - # Class: (protein catabolic process, modulating synaptic transmission) AnnotationAssertion(Annotation( "GOC:dos") Annotation( "PMID:23083742") "Any protein degradation process, occurring at a presynapse, that regulates synaptic transmission.") @@ -88570,16 +88309,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectAllValuesFrom( )) -# Class: (trans-synaptic signaling by nitric oxide) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling between presynapse and postsynapse mediated by nitric oxide.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0099548") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "trans-synaptic signaling by nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (trans-synaptic signaling, modulating synaptic transmission) AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.") @@ -88610,28 +88339,6 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "trans-synaptic signaling by lipid, modulating synaptic transmission") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -# Class: (trans-synaptic signaling by soluble gas, modulating synaptic transmission) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling between presynapse and postsynapse, via the release and reception of gaseous molecules, that modulates the synaptic transmission properties of the synapse.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0099554") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.") -AnnotationAssertion(rdfs:label "trans-synaptic signaling by soluble gas, modulating synaptic transmission") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (trans-synaptic signaling by nitric oxide, modulating synaptic transmission) - -AnnotationAssertion(Annotation( "GOC:dos") "Cell-cell signaling between presynapse and postsynapse, via the release and reception of nitric oxide molecules, that modulates the synaptic transmission properties of the synapse.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0099555") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.") -AnnotationAssertion(rdfs:label "trans-synaptic signaling by nitric oxide, modulating synaptic transmission") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (chemical synaptic transmission, postsynaptic) AnnotationAssertion(Annotation( "GOC:dos") "The part of synaptic transmission occurring in the post-synapse: a signal transduction pathway consisting of neurotransmitter receptor activation and its effects on postsynaptic membrane potential and the ionic composition of the postsynaptic cytosol.") @@ -89375,6 +89082,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:kmv") "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24200"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "kmv") AnnotationAssertion( "2019-08-12T18:01:37Z") AnnotationAssertion( "cellular_component") @@ -89911,7 +89619,7 @@ AnnotationAssertion( AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0140096") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "catalytic activity, acting on a protein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -89924,7 +89632,7 @@ AnnotationAssertion( AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0140097") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "catalytic activity, acting on DNA") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -89938,7 +89646,7 @@ AnnotationAssertion( AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0140098") AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "catalytic activity, acting on RNA") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90363,6 +90071,17 @@ AnnotationAssertion( "nuclear protein-containing complex") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (defense response to symbiont) + +AnnotationAssertion(Annotation( "GOC:pg") "Reactions triggered in response to the presence of a symbiont that act to protect or prevent damage to the host.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20261"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2020-11-11T17:19:06Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0140546") +AnnotationAssertion(rdfs:label "defense response to symbiont") +SubClassOf( ) + # Class: (vacuole fission) AnnotationAssertion(Annotation( "PMID:19643199") "The division of a vacuole within a cell to form two or more separate vacuoles.") @@ -90483,6 +90202,19 @@ AnnotationAssertion( "multicellular organismal-level chemical homeostasis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (intracellular signaling cassette) + +AnnotationAssertion(Annotation( "GOC:ha") Annotation( "GOC:pg") "An intracellular signaling module that is part of larger signaling pathways that can be initiated either intracellularly or by cell surface receptors. Intracellular signaling cassettes are discrete signaling units that are often shared by multiple signaling pathways.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26557"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2023-12-04T14:13:20Z") +AnnotationAssertion( "intracellular signaling cascade") +AnnotationAssertion( "intracellular signaling module") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0141124") +AnnotationAssertion(rdfs:label "intracellular signaling cassette") +SubClassOf( ) + # Class: (regulation of protein localization to lysosome) AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:bc") Annotation( "PMID:24305806") "Any process that modulates the frequency, rate or extent of protein localization to lysosome.") @@ -90526,17 +90258,6 @@ AnnotationAssertion(rdfs:label "dist SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (regulation of synaptic signaling by nitric oxide) - -AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:bc") Annotation( "PMID:26311509") "Any process that modulates the frequency, rate or extent of synaptic signaling by nitric oxide.") -AnnotationAssertion( "bc") -AnnotationAssertion( "2018-04-23T09:42:25Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0150045") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of synaptic signaling by nitric oxide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of postsynapse assembly) AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:bc") Annotation( "PMID:16394100") Annotation( "PMID:16672654") Annotation( "PMID:28185854") "Any process that modulates the frequency, rate or extent of postsynapse assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynapse.") @@ -90852,6 +90573,17 @@ AnnotationAssertion( "chordate pharynx development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (bicarbonate channel activity) + +AnnotationAssertion(Annotation( "PMID:18400985") "Enables the facilitated diffusion of a bicarbonate (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26601"^^xsd:anyURI) +AnnotationAssertion( "rynl") +AnnotationAssertion( "2023-12-13T00:09:44Z") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0160133") +AnnotationAssertion(rdfs:label "bicarbonate channel activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (positive regulation of dendrite development) AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of dendrite development.") @@ -92373,7 +92105,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "carbohydrate derivative metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -93285,11 +93017,13 @@ EquivalentClasses( ObjectIntersection # Class: (organonitrogen compound metabolic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways involving organonitrogen compound.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "pr") AnnotationAssertion( "2012-11-04T15:17:52Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "organonitrogen compound metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901564") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organonitrogen compound metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -93404,7 +93138,6 @@ AnnotationAssertion( "GO:1901605") AnnotationAssertion(rdfs:label "alpha-amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (alpha-amino acid catabolic process) @@ -93432,7 +93165,6 @@ AnnotationAssertion( "GO:1901607") AnnotationAssertion(rdfs:label "alpha-amino acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of vesicle transport along microtubule) @@ -95933,6 +95665,19 @@ AnnotationAssertion( "neural crest cell differentiation involved in parathyroid gland development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (calcium ion import into cytosol) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:vw") Annotation( "GO_REF:0000075") "The directed movement of calcium ion into a cytosol.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2014-01-22T13:41:11Z") +AnnotationAssertion( "calcium import into cytosol") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1902656") +AnnotationAssertion(rdfs:label "calcium ion import into cytosol") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (negative regulation of RNA biosynthetic process) AnnotationAssertion(Annotation( "GO:jl") Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") "Any process that stops, prevents or reduces the frequency, rate or extent of RNA biosynthetic process.") @@ -99164,55 +98909,6 @@ AnnotationAssertion( "positive regulation of DNA catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cytoplasmic transport) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:25049409") "Any process that modulates the frequency, rate or extent of cytoplasmic transport.") -AnnotationAssertion( "jl") -AnnotationAssertion( "2014-11-24T13:38:17Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of cytoplasmic streaming") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903649") -AnnotationAssertion(rdfs:label "regulation of cytoplasmic transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of cytoplasmic transport) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:25049409") "Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic transport.") -AnnotationAssertion( "jl") -AnnotationAssertion( "2014-11-24T13:38:26Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of cytoplasmic streaming") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903650") -AnnotationAssertion(rdfs:label "negative regulation of cytoplasmic transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of cytoplasmic transport) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:25049409") "Any process that activates or increases the frequency, rate or extent of cytoplasmic transport.") -AnnotationAssertion( "jl") -AnnotationAssertion( "2014-11-24T13:38:34Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of cytoplasmic transport") -AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of cytoplasmic streaming") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of cytoplasmic streaming") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903651") -AnnotationAssertion(rdfs:label "positive regulation of cytoplasmic transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (acinar cell of sebaceous gland differentiation) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000086") Annotation( "PMID:17018284") Annotation( "PMID:18334552") Annotation( "PMID:19944183") "The process in which a relatively unspecialized cell acquires the specialized features of an acinar cell of sebaceous gland.") @@ -101844,44 +101540,6 @@ AnnotationAssertion( "positive regulation of neuromuscular junction development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (negative regulation of nitric oxide metabolic process) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:11991626") "Any process that stops, prevents or reduces the frequency, rate or extent of nitric oxide metabolic process.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-06-24T20:56:41Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of nitric oxide metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1904406") -AnnotationAssertion(rdfs:label "negative regulation of nitric oxide metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of nitric oxide metabolic process) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:11991626") "Any process that activates or increases the frequency, rate or extent of nitric oxide metabolic process.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-06-24T20:56:47Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of nitric oxide metabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of nitric oxide metabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of nitric oxide metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1904407") -AnnotationAssertion(rdfs:label "positive regulation of nitric oxide metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (melatonin binding) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:mr") Annotation( "GO_REF:0000067") Annotation( "PMID:10379923") "Binding to melatonin.") @@ -106141,69 +105799,6 @@ AnnotationAssertion( "positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (intracellular signal transduction involved in positive regulation of cell growth) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:al") Annotation( "GOC:vw") Annotation( "GO_REF:0000060") Annotation( "PMID:15917811") "Any intracellular signal transduction that is involved in positive regulation of cell growth.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2016-09-07T18:15:01Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling chain involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling chain involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling chain involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling chain involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular protein kinase cascade involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular protein kinase cascade involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular protein kinase cascade involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular protein kinase cascade involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular protein kinase cascade involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular protein kinase cascade involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction pathway involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction pathway involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction pathway involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction pathway involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction pathway involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signal transduction pathway involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling chain involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling chain involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "protein kinase cascade involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "protein kinase cascade involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "protein kinase cascade involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "protein kinase cascade involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "protein kinase cascade involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "protein kinase cascade involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transmission via intracellular cascade involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transmission via intracellular cascade involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transmission via intracellular cascade involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transmission via intracellular cascade involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transmission via intracellular cascade involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transmission via intracellular cascade involved in upregulation of cell growth") -AnnotationAssertion( "biological_process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling cascade involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling cascade involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling cascade involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling cascade involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling cascade involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling cascade involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling pathway involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling pathway involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling pathway involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling pathway involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling pathway involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "intracellular signaling pathway involved in upregulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transduction via intracellular signaling cascade involved in activation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transduction via intracellular signaling cascade involved in positive regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transduction via intracellular signaling cascade involved in stimulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transduction via intracellular signaling cascade involved in up regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transduction via intracellular signaling cascade involved in up-regulation of cell growth") -AnnotationAssertion(Annotation( "GOC:TermGenie") "signal transduction via intracellular signaling cascade involved in upregulation of cell growth") -AnnotationAssertion( "GO:1905427") -AnnotationAssertion(rdfs:label "intracellular signal transduction involved in positive regulation of cell growth") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (response to glycine) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000071") Annotation( "PMID:18984164") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycine stimulus.") @@ -109750,51 +109345,6 @@ AnnotationAssertion( "negative regulation of DNA biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular amino acid biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process.") -AnnotationAssertion( "vw") -AnnotationAssertion( "2010-12-10T11:54:19Z") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of amino acid biosynthetic process") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid anabolism") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid biosynthesis") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid formation") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000282") -AnnotationAssertion(rdfs:label "regulation of cellular amino acid biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of amino acid biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that stops, prevents or reduces the frequency, rate or extent of an amino acid biosynthetic process.") -AnnotationAssertion( "vw") -AnnotationAssertion( "2010-12-10T11:54:23Z") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of amino acid anabolism") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of amino acid biosynthesis") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of amino acid formation") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of amino acid synthesis") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of cellular amino acid biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000283") -AnnotationAssertion(rdfs:label "negative regulation of amino acid biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of amino acid biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of cellular amino acid biosynthetic process.") -AnnotationAssertion( "vw") -AnnotationAssertion( "2010-12-10T11:54:27Z") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of amino acid anabolism") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of amino acid biosynthesis") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of amino acid formation") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of amino acid synthesis") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of cellular amino acid biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000284") -AnnotationAssertion(rdfs:label "positive regulation of amino acid biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (positive regulation of myotome development) AnnotationAssertion(Annotation( "GOC:BHF") "Any process that activates or increases the frequency, rate or extent of myotome development.") @@ -130090,10 +129640,10 @@ AnnotationAssertion(Annotation( "VHOG:0001359") AnnotationAssertion( "Wikipedia:Cervix") AnnotationAssertion( "galen:CervixUteri") -AnnotationAssertion(Annotation( "FMA:17740") Annotation( "FMA:TA") Annotation( ) "canalis cervicis uteri") +AnnotationAssertion(Annotation( "FMA:17740") Annotation( "FMA:TA") Annotation( ) "canalis cervicis uteri") AnnotationAssertion( "caudal segment of uterus") AnnotationAssertion(Annotation( "FMA:17740") "cervical canal of uterus") -AnnotationAssertion(Annotation( "EMAPA:29927") Annotation( ) "cervix uteri") +AnnotationAssertion(Annotation( "EMAPA:29927") Annotation( ) "cervix uteri") AnnotationAssertion(Annotation( "FMA:17740") "neck of uterus") AnnotationAssertion(Annotation( "FMA:17740") "uterine cervix") AnnotationAssertion( "uberon") @@ -130164,7 +129714,7 @@ AnnotationAssertion(Annotation( "MA:0000281") Annotation( ) "nose") AnnotationAssertion(Annotation( "ZFA:0000047") "peripheral olfactory organ") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nose") Annotation( ) "nasus") +AnnotationAssertion(Annotation( "Wikipedia:Nose") Annotation( ) "nasus") AnnotationAssertion(Annotation( "UBERON:cjm") "olfactory apparatus") AnnotationAssertion( "proboscis") AnnotationAssertion( "UBERON:0000004") @@ -130186,7 +129736,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (chemosensory organ) -AnnotationAssertion( "FBbt:00005157") +AnnotationAssertion(Annotation( ) "FBbt:00005157") AnnotationAssertion(Annotation( "FBbt:00005157") "chemosensory sensory organ") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000005") @@ -130280,7 +129830,7 @@ AnnotationAssertion( "XAO:0000017") AnnotationAssertion( "ZFA:0000118") AnnotationAssertion(Annotation( "BIRNLEX:1353") "neuronames:399") -AnnotationAssertion(Annotation( "Wikipedia:Pituitary_gland") Annotation( ) "glandula pituitaria") +AnnotationAssertion(Annotation( "Wikipedia:Pituitary_gland") Annotation( ) "glandula pituitaria") AnnotationAssertion(Annotation( "BTO:0001073") "pituitary") AnnotationAssertion(Annotation( "BTO:0001073") "pituitary body") AnnotationAssertion( "uberon") @@ -130356,7 +129906,7 @@ AnnotationAssertion( "EHDAA:2893") AnnotationAssertion( "EMAPA:16665") AnnotationAssertion( "EV:0100335") -AnnotationAssertion( "FBbt:00005098") +AnnotationAssertion(Annotation( ) "FBbt:00005098") AnnotationAssertion( "FMA:9903") AnnotationAssertion( "GAID:715") AnnotationAssertion( "MA:0000218") @@ -130373,8 +129923,8 @@ AnnotationAssertion( "XAO:0000178") AnnotationAssertion( "ZFA:0000142") AnnotationAssertion( "neuronames:3232") -AnnotationAssertion(Annotation( "FMA:9903") Annotation( "FMA:TA") Annotation( "Wikipedia:Peripheral_nervous_system") Annotation( ) "pars peripherica") -AnnotationAssertion(Annotation( "FMA:9903") Annotation( "FMA:TA") Annotation( "Wikipedia:Peripheral_nervous_system") Annotation( ) "systema nervosum periphericum") +AnnotationAssertion(Annotation( "FMA:9903") Annotation( "FMA:TA") Annotation( "Wikipedia:Peripheral_nervous_system") Annotation( ) "pars peripherica") +AnnotationAssertion(Annotation( "FMA:9903") Annotation( "FMA:TA") Annotation( "Wikipedia:Peripheral_nervous_system") Annotation( ) "systema nervosum periphericum") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000010") AnnotationAssertion( ) @@ -130418,9 +129968,9 @@ AnnotationAssertion( "ZFA:0001575") AnnotationAssertion( "PNS - parasympathetic") AnnotationAssertion( "parasympathetic part of autonomic division of nervous system") -AnnotationAssertion(Annotation( "FMA:9907") Annotation( "FMA:TA") Annotation( ) "pars parasympathica divisionis autonomici systematis nervosi") +AnnotationAssertion(Annotation( "FMA:9907") Annotation( "FMA:TA") Annotation( ) "pars parasympathica divisionis autonomici systematis nervosi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Parasympathetic_nervous_system") Annotation( ) "pars parasympathica divisionis autonomici systematis nervosi") +AnnotationAssertion(Annotation( "Wikipedia:Parasympathetic_nervous_system") Annotation( ) "pars parasympathica divisionis autonomici systematis nervosi") AnnotationAssertion( "UBERON:0000011") AnnotationAssertion( ) AnnotationAssertion( ) @@ -130484,11 +130034,11 @@ AnnotationAssertion(Annotation( "VHOG:0000384") AnnotationAssertion( "Wikipedia:Sympathetic_nervous_system") AnnotationAssertion( "ZFA:0001576") -AnnotationAssertion(Annotation( "FMA:9906") Annotation( "FMA:TA") Annotation( ) "pars sympathica divisionis autonomici systematis nervosi") +AnnotationAssertion(Annotation( "FMA:9906") Annotation( "FMA:TA") Annotation( ) "pars sympathica divisionis autonomici systematis nervosi") AnnotationAssertion( "sympathetic nervous system") AnnotationAssertion( "sympathetic part of autonomic division of nervous system") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sympathetic_nervous_system") Annotation( ) "pars sympathica divisionis autonomici systematis nervosi") +AnnotationAssertion(Annotation( "Wikipedia:Sympathetic_nervous_system") Annotation( ) "pars sympathica divisionis autonomici systematis nervosi") AnnotationAssertion( "UBERON:0000013") AnnotationAssertion( ) AnnotationAssertion( ) @@ -130569,6 +130119,7 @@ AnnotationAssertion( "EV:0100129") AnnotationAssertion( "FMA:16018") AnnotationAssertion( "MA:0001582") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D007515") AnnotationAssertion( "NCIT:C32509") AnnotationAssertion( "SCTID:361339003") AnnotationAssertion( "TAO:0001260") @@ -130612,7 +130163,7 @@ AnnotationAssertion( "EV:0100093") AnnotationAssertion( "FMA:16017") AnnotationAssertion( "MA:0002415") -AnnotationAssertion( "MESH:D046790") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D046790") AnnotationAssertion( "NCIT:C32546") AnnotationAssertion( "SCTID:248202004") AnnotationAssertion( "TAO:0001249") @@ -130647,9 +130198,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "FB:gg") Annotation( "Wikipedia:Compound_eye") "A light sensing organ composed of ommatidia.") AnnotationAssertion(Annotation( "PMID:21062451") "The term compound eye is sometimes used for the multi-unit eyes of annelids, bivalves, echinoderms. We follow Richter et al and restrict this class to the arthropod structure for these structures") AnnotationAssertion( "BTO:0001921") -AnnotationAssertion( "FBbt:00004508") +AnnotationAssertion(Annotation( ) "FBbt:00004508") AnnotationAssertion( "HAO:0000217") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "IDOMAL:0002421") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0002421") AnnotationAssertion( "TGMA:0000024") AnnotationAssertion( "Wikipedia:Compound_eye") AnnotationAssertion( "uberon") @@ -130690,7 +130241,7 @@ AnnotationAssertion(Annotation( "VHOG:0000275") AnnotationAssertion( "XAO:0000179") AnnotationAssertion( "ZFA:0000107") -AnnotationAssertion(Annotation( "FMA:54448") Annotation( "FMA:TA") Annotation( ) "regio orbitalis") +AnnotationAssertion(Annotation( "FMA:54448") Annotation( "FMA:TA") Annotation( ) "regio orbitalis") AnnotationAssertion( "vertebrate eye") AnnotationAssertion( "uberon") AnnotationAssertion( "camera-type eye plus associated structures") @@ -130721,7 +130272,7 @@ AnnotationAssertion( "EHDAA2:0001824") AnnotationAssertion( "EHDAA:500") AnnotationAssertion( "EMAPA:35955") -AnnotationAssertion( "FBbt:00005155") +AnnotationAssertion(Annotation( ) "FBbt:00005155") AnnotationAssertion( "GAID:63") AnnotationAssertion( "HAO:0000930") AnnotationAssertion( "MA:0000017") @@ -130796,7 +130347,7 @@ AnnotationAssertion( "EHDAA2:0003193") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37283") AnnotationAssertion( "EV:0100155") -AnnotationAssertion( "FBbt:00007000") +AnnotationAssertion(Annotation( ) "FBbt:00007000") AnnotationAssertion( "HAO:0000144") AnnotationAssertion( "MAT:0000023") AnnotationAssertion( "MESH:D005121") @@ -130845,7 +130396,7 @@ AnnotationAssertion( "galen:Lymphnode") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "VHOG:0001273") "lymph gland") -AnnotationAssertion(Annotation( "Wikipedia:Lymph_node") Annotation( ) "nodus lymphaticus") +AnnotationAssertion(Annotation( "Wikipedia:Lymph_node") Annotation( ) "nodus lymphaticus") AnnotationAssertion( "UBERON:0000029") AnnotationAssertion( ) AnnotationAssertion( ) @@ -130972,7 +130523,7 @@ AnnotationAssertion( "FMA:18634") AnnotationAssertion( "MA:0002907") AnnotationAssertion( "SCTID:258665002") -AnnotationAssertion(Annotation( "FMA:18634") Annotation( ) "folliculus ovaricus primarius") +AnnotationAssertion(Annotation( "FMA:18634") Annotation( ) "folliculus ovaricus primarius") AnnotationAssertion(Annotation( "EMAPA:35631") Annotation( "MA:0002907") "ovary primary follicle") AnnotationAssertion(Annotation( "FMA:18634") "primary follicle of ovary") AnnotationAssertion(Annotation( "FMA:18634") "primary ovarian follicle") @@ -131026,7 +130577,7 @@ AnnotationAssertion( "ncithesaurus:Graafian_Follicle") "UMLS:C0600225") AnnotationAssertion(Annotation( "http://www.repropedia.org/antral-follicle") "Graafian follicle") AnnotationAssertion(Annotation( "GO:0001547") "antral ovarian follicle") -AnnotationAssertion(Annotation( "FMA:18641") Annotation( "FMA:TA") Annotation( ) "folliculi ovarici vesiculosi") +AnnotationAssertion(Annotation( "FMA:18641") Annotation( "FMA:TA") Annotation( ) "folliculi ovarici vesiculosi") AnnotationAssertion( "folliculus ovaricus tertiarius") AnnotationAssertion(Annotation( "FMA:18641") "folliculus ovaricus tertiarius (vesiculosus)") AnnotationAssertion( "folliculus ovaricus tertiarius (vesiculous)") @@ -131061,11 +130612,11 @@ AnnotationAssertion( "ncithesaurus:Ovarian_Follicle_Fluid") "UMLS:C1709369") AnnotationAssertion( "Wikipedia:Follicular_fluid") AnnotationAssertion(Annotation( "FMA:18665") "liquor follicularis") -AnnotationAssertion(Annotation( ) "liquor folliculi") +AnnotationAssertion(Annotation( ) "liquor folliculi") AnnotationAssertion(Annotation( "MA:0002511") "ovary follicle fluid") AnnotationAssertion( "uberon") AnnotationAssertion( "antral fluid, ovarian follicle") -AnnotationAssertion(Annotation( "Wikipedia:Follicular_fluid") Annotation( ) "liquor folliculi") +AnnotationAssertion(Annotation( "Wikipedia:Follicular_fluid") Annotation( ) "liquor folliculi") AnnotationAssertion(Annotation( "BTO:0004383") "ovarian follicular fluid") AnnotationAssertion(Annotation( "BTO:0004383") "ovary follicular fluid") AnnotationAssertion( "UBERON:0000038") @@ -131092,7 +130643,7 @@ AnnotationAssertion(Annotation( "FMA:18675") "antrum folliculare") AnnotationAssertion(Annotation( "GO:0001548") "ovarian follicle antrum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Follicular_antrum") Annotation( ) "antrum follicularum") +AnnotationAssertion(Annotation( "Wikipedia:Follicular_antrum") Annotation( ) "antrum follicularum") AnnotationAssertion( "UBERON:0000039") AnnotationAssertion( ) AnnotationAssertion( ) @@ -131114,7 +130665,7 @@ AnnotationAssertion( "ncithesaurus:Serosa") "UMLS:C0036760") AnnotationAssertion( "Wikipedia:Serous_membrane") AnnotationAssertion( "ZFA:0005425") -AnnotationAssertion(Annotation( "FMA:9581") Annotation( ) "tunica serosa") +AnnotationAssertion(Annotation( "FMA:9581") Annotation( ) "tunica serosa") AnnotationAssertion(Annotation( "FMA:9581") "wall of serous sac") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Serous_membrane") "serosa") @@ -131157,7 +130708,7 @@ AnnotationAssertion( "galen:Tendon") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Tendon") "sinew") -AnnotationAssertion(Annotation( "Wikipedia:Tendon") Annotation( ) "tendo") +AnnotationAssertion(Annotation( "Wikipedia:Tendon") Annotation( ) "tendo") AnnotationAssertion( "UBERON:0000043") AnnotationAssertion( ) AnnotationAssertion( ) @@ -131197,6 +130748,7 @@ AnnotationAssertion( "MA:0000231") AnnotationAssertion( "MA:0000232") AnnotationAssertion( "MAT:0000162") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005727") AnnotationAssertion( "MIAA:0000162") AnnotationAssertion( "NCIT:C12462") AnnotationAssertion( "SCTID:244455004") @@ -131214,7 +130766,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( ) "DRG") AnnotationAssertion(Annotation( ) "dorsal root ganglia") -AnnotationAssertion(Annotation( "BTO:0001264") Annotation( "Wikipedia:Dorsal_root_ganglion") Annotation( ) "ganglion sensorium nervi spinalis") +AnnotationAssertion(Annotation( "BTO:0001264") Annotation( "Wikipedia:Dorsal_root_ganglion") Annotation( ) "ganglion sensorium nervi spinalis") AnnotationAssertion(Annotation( "BTO:0001264") "ganglion spinale") AnnotationAssertion(Annotation( "EMAPA:16668") "posterior root ganglion") AnnotationAssertion( "UBERON:0000044") @@ -131326,7 +130878,7 @@ AnnotationAssertion(Annotation( "FMA:83865") "neuraxis fornix") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:61965") "fornix (column and body of fornix)") -AnnotationAssertion(Annotation( "NeuroNames:268") Annotation( ) "fornix cerebri") +AnnotationAssertion(Annotation( "NeuroNames:268") Annotation( ) "fornix cerebri") AnnotationAssertion( "fornix hippocampus") AnnotationAssertion( "hippocampus fornix") AnnotationAssertion( "UBERON:0000052") @@ -131377,7 +130929,6 @@ DisjointClasses( "MESH:A09.246.631.909.625.125") "Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified].") AnnotationAssertion( "this refers to the inner ear structure, not the macula of the retina. We follow ZFA in including a grouping class for the macula of utricle and sacule") -AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000386") Annotation( "TAO") Annotation( "ZFIN:curator") "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]") AnnotationAssertion( "macular") AnnotationAssertion( "GAID:777") @@ -131392,7 +130943,6 @@ AnnotationAssertion( "MESH:A09.246.631.909.625.125") "acoustic macula") AnnotationAssertion(Annotation( "MESH:A09.246.631.909.625.125") Annotation( ) "acoustic maculae") AnnotationAssertion( "UBERON:0000054") -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "macula") @@ -131513,7 +131063,7 @@ AnnotationAssertion(Annotation( "ZFA:0005171") "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA:0005171].") AnnotationAssertion( "Most ducts, but not all, are exocrine gland ducts. Some ontologies classify structures such as the oviduct here.") AnnotationAssertion( "AAO:0011123") -AnnotationAssertion( "FBbt:00100314") +AnnotationAssertion(Annotation( ) "FBbt:00100314") AnnotationAssertion( "FMA:30320") AnnotationAssertion( "NCIT:C12948") AnnotationAssertion( "SCTID:91726008") @@ -131610,7 +131160,7 @@ AnnotationAssertion( "CARO:0000003") AnnotationAssertion( "EHDAA2:0003003") AnnotationAssertion( "EMAPA:0") -AnnotationAssertion( "FBbt:00007001") +AnnotationAssertion(Annotation( ) "FBbt:00007001") AnnotationAssertion( "FMA:305751") AnnotationAssertion( "FMA:67135") AnnotationAssertion( "GAID:781") @@ -131917,7 +131467,7 @@ AnnotationAssertion(Annotation( "http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus") "Malpighian tuft") AnnotationAssertion(Annotation( "ZFA:0001288") "glomerular capillary tuft") AnnotationAssertion(Annotation( ) "glomerular tuft") -AnnotationAssertion(Annotation( "Wikipedia:Glomerulus") Annotation( ) "glomerulus renis") +AnnotationAssertion(Annotation( "Wikipedia:Glomerulus") Annotation( ) "glomerulus renis") AnnotationAssertion(Annotation( ) "renal corpuscle") AnnotationAssertion( "UBERON:0000074") AnnotationAssertion( ) @@ -131958,7 +131508,7 @@ AnnotationAssertion(Annotation( "merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube)") AnnotationAssertion( ) AnnotationAssertion( "(or external ectoderm) forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006242") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006242") AnnotationAssertion( "EHDAA2:0001968") AnnotationAssertion( "EHDAA:1494") AnnotationAssertion( "EHDAA:350") @@ -132005,6 +131555,7 @@ EquivalentClasses( ObjectIntersec # Class: (male reproductive system) AnnotationAssertion(Annotation( "MP:0001145") "The organs associated with producing offspring in the gender that produces spermatozoa.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000725") Annotation( "VHOG") Annotation( "ISBN:978-0792383369 Lombardi J, Comparative vertebrate reproduction (1998) p.43") Annotation( "http://bgee.unil.ch/") "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]") AnnotationAssertion( "BTO:0000082") AnnotationAssertion( "CALOHA:TS-1310") @@ -132013,7 +131564,7 @@ AnnotationAssertion( "EHDAA:8136") AnnotationAssertion( "EMAPA:17968") AnnotationAssertion( "EV:0100101") -AnnotationAssertion( "FBbt:00004927") +AnnotationAssertion(Annotation( ) "FBbt:00004927") AnnotationAssertion( "FMA:45664") AnnotationAssertion( "GAID:386") AnnotationAssertion( "HAO:0000505") @@ -132041,6 +131592,7 @@ AnnotationAssertion(Annotation( "BTO:0000082") "systema genitale masculinum") AnnotationAssertion( "UBERON:0000079") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "male reproductive system") AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^xsd:anyURI) @@ -132147,7 +131699,7 @@ AnnotationAssertion( "XAO:0000148") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "VHOG:0000500") Annotation( ) "renal tubules") -AnnotationAssertion(Annotation( "Wikipedia:Mesonephric_tubules") Annotation( ) "tubuli mesonephrici") +AnnotationAssertion(Annotation( "Wikipedia:Mesonephric_tubules") Annotation( ) "tubuli mesonephrici") AnnotationAssertion( "UBERON:0000083") AnnotationAssertion(rdfs:label "mesonephric tubule") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -132170,8 +131722,8 @@ AnnotationAssertion( "Wikipedia:Ureteric_bud") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001646") "diverticulum") -AnnotationAssertion(Annotation( "Wikipedia:Ureteric_bud") Annotation( ) "diverticulum metanephricum") -AnnotationAssertion(Annotation( "Wikipedia:Ureteric_bud") Annotation( ) "gemma ureterica") +AnnotationAssertion(Annotation( "Wikipedia:Ureteric_bud") Annotation( ) "diverticulum metanephricum") +AnnotationAssertion(Annotation( "Wikipedia:Ureteric_bud") Annotation( ) "gemma ureterica") AnnotationAssertion(Annotation( "BTO:0001646") "metanephric bud") AnnotationAssertion(Annotation( "Wikipedia:Metanephros#Metanephros") "metanephric diverticulum") AnnotationAssertion( "ureteric ampulla") @@ -132270,7 +131822,7 @@ AnnotationAssertion( "VHOG:0000742") "ICM") AnnotationAssertion(Annotation( "FMA:86557") "early embryoblast") AnnotationAssertion( "embryoblast") -AnnotationAssertion(Annotation( "Wikipedia:Inner_cell_mass") Annotation( ) "embryoblastus; massa cellularis interna; pluriblastus senior") +AnnotationAssertion(Annotation( "Wikipedia:Inner_cell_mass") Annotation( ) "embryoblastus; massa cellularis interna; pluriblastus senior") AnnotationAssertion( "pluriblast") AnnotationAssertion( "UBERON:0000087") AnnotationAssertion( ) @@ -132302,8 +131854,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Trophoblast") AnnotationAssertion(Annotation( "MP:0005031") "trophoblast layer") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Trophoblast") Annotation( ) "massa cellularis externa") -AnnotationAssertion(Annotation( "Wikipedia:Trophoblast") Annotation( ) "trophoblastus") +AnnotationAssertion(Annotation( "Wikipedia:Trophoblast") Annotation( ) "massa cellularis externa") +AnnotationAssertion(Annotation( "Wikipedia:Trophoblast") Annotation( ) "trophoblastus") AnnotationAssertion(Annotation( "BTO:0001079") "trophoderm") AnnotationAssertion( "UBERON:0000088") AnnotationAssertion( ) @@ -132513,7 +132065,7 @@ AnnotationAssertion( "EFO:0001322") AnnotationAssertion( "EHDAA:27") AnnotationAssertion( "FBdv:00005288") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "IDOMAL:0000302") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0000302") AnnotationAssertion( "NCIT:C12601") AnnotationAssertion( "PdumDv:0000100") AnnotationAssertion( "VHOG:0000745") @@ -132527,7 +132079,7 @@ AnnotationAssertion( "fertilized egg stage") AnnotationAssertion(Annotation( "VHOG:0000745") "one-cell stage") AnnotationAssertion(Annotation( "VHOG:0000745") "zygote") -AnnotationAssertion(Annotation( "Wikipedia:Zygote") Annotation( ) "zygotum") +AnnotationAssertion(Annotation( "Wikipedia:Zygote") Annotation( ) "zygotum") AnnotationAssertion( "UBERON:0000106") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "zygote stage") @@ -132775,8 +132327,8 @@ AnnotationAssertion(Annotation( "ncithesaurus:Respiratory_Diverticulum") "UMLS:C1514897") AnnotationAssertion( "Wikipedia:Respiratory_bud") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lung_buds") Annotation( ) "gemma pulmonalis") -AnnotationAssertion(Annotation( "Wikipedia:Lung_buds") Annotation( ) "gemma respiratoria") +AnnotationAssertion(Annotation( "Wikipedia:Lung_buds") Annotation( ) "gemma pulmonalis") +AnnotationAssertion(Annotation( "Wikipedia:Lung_buds") Annotation( ) "gemma respiratoria") AnnotationAssertion(Annotation( ) "lung bud") AnnotationAssertion(Annotation( "GO:0060572") "primary lung bud") AnnotationAssertion(Annotation( "Wikipedia:Lung_buds") "respiratory diverticulum") @@ -132808,7 +132360,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (blood brain barrier) AnnotationAssertion(Annotation( "DOI:10.1002/glia.20642") Annotation( "Wikipedia:Blood-brain_barrier") "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions.") -AnnotationAssertion( "MESH:D001812") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001812") AnnotationAssertion( "NCIT:C13194") AnnotationAssertion(Annotation( "ncithesaurus:Blood-Brain_Barrier") "UMLS:C0005854") AnnotationAssertion( "Wikipedia:Blood-brain_barrier") @@ -132854,7 +132406,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "CARO:0001001") Annotation( "FBC:DOS") Annotation( "FBbt:00005099") "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.") AnnotationAssertion( "UBERON:0005163") AnnotationAssertion( "CARO:0001001") -AnnotationAssertion( "FBbt:00005099") +AnnotationAssertion(Annotation( ) "FBbt:00005099") AnnotationAssertion( "NLX:147821") AnnotationAssertion( "funiculus") AnnotationAssertion(Annotation( "FBbt:00005099") "nerve fiber bundle") @@ -132922,7 +132474,7 @@ AnnotationAssertion( "FMA:54501") "cranial neural nucleus") AnnotationAssertion( "nucleus of cranial nerve") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cranial_nerve_nucleus") Annotation( ) "nucleus nervi cranialis") +AnnotationAssertion(Annotation( "Wikipedia:Cranial_nerve_nucleus") Annotation( ) "nucleus nervi cranialis") AnnotationAssertion( "UBERON:0000126") AnnotationAssertion(rdfs:label "cranial nerve nucleus") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) @@ -132999,7 +132551,7 @@ AnnotationAssertion( "ZFA:0001113") "thecal cell layer") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35636") "ovarian theca") -AnnotationAssertion(Annotation( "Wikipedia:Theca_of_follicle") Annotation( ) "theca folliculi") +AnnotationAssertion(Annotation( "Wikipedia:Theca_of_follicle") Annotation( ) "theca folliculi") AnnotationAssertion(Annotation( "ZFA:0001113") Annotation( ) "thecal cell layers") AnnotationAssertion( "UBERON:0000155") AnnotationAssertion( ) @@ -133034,7 +132586,7 @@ AnnotationAssertion( "EMAPA:18256") AnnotationAssertion( "FMA:15703") AnnotationAssertion( "MA:0000330") -AnnotationAssertion( "MESH:D001003") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001003") AnnotationAssertion( "NCIT:C12375") AnnotationAssertion( "SCTID:245438008") AnnotationAssertion(Annotation( "ncithesaurus:Anal_Canal") "UMLS:C0227411") @@ -133046,7 +132598,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "anal pad") AnnotationAssertion( "anus") -AnnotationAssertion(Annotation( "BTO:0001978") Annotation( "Wikipedia:Anal_canal") Annotation( ) "canalis analis") +AnnotationAssertion(Annotation( "BTO:0001978") Annotation( "Wikipedia:Anal_canal") Annotation( ) "canalis analis") AnnotationAssertion( "cloaca") AnnotationAssertion( "cloacal chamber") AnnotationAssertion( "mesenteron") @@ -133194,7 +132746,7 @@ AnnotationAssertion( "Wikipedia:Definitive_urogenital_sinus") AnnotationAssertion(Annotation( "MP:0010116") "UGS") AnnotationAssertion(Annotation( "PMID:18977204") "fetal UGS") -AnnotationAssertion(Annotation( ) "sinus urogenitalis") +AnnotationAssertion(Annotation( ) "sinus urogenitalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000164") AnnotationAssertion( ) @@ -133223,7 +132775,7 @@ AnnotationAssertion( "EHDAA2:0001326") AnnotationAssertion( "EHDAA:542") AnnotationAssertion( "EMAPA:16262") -AnnotationAssertion( "FBbt:00003126") +AnnotationAssertion(Annotation( ) "FBbt:00003126") AnnotationAssertion( "FMA:49184") AnnotationAssertion( "GAID:75") AnnotationAssertion( "MA:0000341") @@ -133244,10 +132796,10 @@ AnnotationAssertion( "ZFA:0000590") AnnotationAssertion( "galen:Mouth") AnnotationAssertion( "http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg") -AnnotationAssertion(Annotation( "BTO:0004698") Annotation( "FMA:49184") Annotation( "FMA:TA") Annotation( ) "regio oralis") +AnnotationAssertion(Annotation( "BTO:0004698") Annotation( "FMA:49184") Annotation( "FMA:TA") Annotation( ) "regio oralis") AnnotationAssertion( "adult mouth") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Mouth") Annotation( ) "cavital oralis") +AnnotationAssertion(Annotation( "Wikipedia:Mouth") Annotation( ) "cavital oralis") AnnotationAssertion(Annotation( "BTO:0001090") "cavitas oris") AnnotationAssertion(Annotation( "BTO:0001090") "cavum oris") AnnotationAssertion(Annotation( "BTO:0001090") "mouth cavity") @@ -133308,6 +132860,7 @@ AnnotationAssertion( "EV:0100057") AnnotationAssertion( "FMA:20292") AnnotationAssertion( "HAO:0000669") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D009055") AnnotationAssertion( "NCIT:C12421") AnnotationAssertion( "SCTID:181220002") AnnotationAssertion( "TAO:0001027") @@ -133347,13 +132900,15 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (pair of lungs) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "The pair of anatomical structures comprised of a left lung and right lung.") +AnnotationAssertion( ) AnnotationAssertion( "FMA:68877") AnnotationAssertion( "lungs") AnnotationAssertion( "lungs pair") -AnnotationAssertion(Annotation( "FMA:68877") Annotation( "FMA:TA") Annotation( ) "pulmones") +AnnotationAssertion(Annotation( "FMA:68877") Annotation( "FMA:TA") Annotation( ) "pulmones") AnnotationAssertion( "set of lungs") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000170") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pair of lungs") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) @@ -133400,8 +132955,8 @@ AnnotationAssertion( "ncithesaurus:Amniotic_Fluid") "UMLS:C0002638") AnnotationAssertion( "VHOG:0001267") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0000068") Annotation( ) "acqua amnii") -AnnotationAssertion(Annotation( "BTO:0000068") Annotation( ) "liquor amnii") +AnnotationAssertion(Annotation( "BTO:0000068") Annotation( ) "acqua amnii") +AnnotationAssertion(Annotation( "BTO:0000068") Annotation( ) "liquor amnii") AnnotationAssertion( "UBERON:0000173") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amniotic fluid") @@ -133544,6 +133099,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "A blood brain barrier composed of glial cells.") AnnotationAssertion( ) AnnotationAssertion( "2009-04-10T08:42:24Z") +AnnotationAssertion(Annotation( ) "FBbt:00007091") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000202") AnnotationAssertion(rdfs:label "glial blood brain barrier") @@ -133627,7 +133183,7 @@ AnnotationAssertion(Annotation( "FMA:52734") Annotation( "MA:0001466") Annotation( ) "frontal bone") AnnotationAssertion(Annotation( "Wikipedia:Frontal_bone") Annotation( ) "os frontal") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Frontal_bone") Annotation( ) "os frontale") +AnnotationAssertion(Annotation( "Wikipedia:Frontal_bone") Annotation( ) "os frontale") AnnotationAssertion( "UBERON:0000209") AnnotationAssertion( ) AnnotationAssertion( ) @@ -133688,7 +133244,6 @@ EquivalentClasses( ObjectIntersec # Class: (vertebral foramen of atlas) -AnnotationAssertion(Annotation( "Wikipedia:Atlas_(anatomy)#Vertebral_foramen") ".") AnnotationAssertion( "FMA:24293") AnnotationAssertion( "SCTID:281228008") AnnotationAssertion( "Wikipedia:Atlas_(anatomy)#Vertebral_foramen") @@ -133702,7 +133257,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "Wikipedia:Atlanto-occipital_joint") "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital.") AnnotationAssertion( "FMA:24939") -AnnotationAssertion( "MESH:D001269") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001269") AnnotationAssertion( "NCIT:C32158") AnnotationAssertion( "SCTID:361831006") AnnotationAssertion(Annotation( "ncithesaurus:Atlanto-occipital_Joint") "UMLS:C0004169") @@ -133715,7 +133270,7 @@ AnnotationAssertion(Annotation( "occipito atlantal joint") AnnotationAssertion( "occipito-atlantal joint") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Atlanto-occipital_joint") Annotation( ) "articulatio atlantooccipitalis") +AnnotationAssertion(Annotation( "Wikipedia:Atlanto-occipital_joint") Annotation( ) "articulatio atlantooccipitalis") AnnotationAssertion( "UBERON:0000220") AnnotationAssertion(rdfs:label "atlanto-occipital joint") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png"^^xsd:anyURI) @@ -133736,7 +133291,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Tendon_sheath") AnnotationAssertion(Annotation( "FMA:45087") "synovial tendon sheath") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Tendon_sheath") Annotation( ) "vagina tendinis") +AnnotationAssertion(Annotation( "Wikipedia:Tendon_sheath") Annotation( ) "vagina tendinis") AnnotationAssertion( "UBERON:0000304") AnnotationAssertion(rdfs:label "tendon sheath") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -133840,7 +133395,7 @@ AnnotationAssertion( "FMA:9601") "mammary part of chest") AnnotationAssertion(Annotation( "FMA:9601") "mammary region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Breast") Annotation( ) "mamma") +AnnotationAssertion(Annotation( "Wikipedia:Breast") Annotation( ) "mamma") AnnotationAssertion( "UBERON:0000310") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "breast") @@ -133911,10 +133466,10 @@ AnnotationAssertion( "subarachnoid space of central nervous system") AnnotationAssertion(Annotation( "FMA:322060") "subarachnoid space of neuraxis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0000230") Annotation( ) "cavitas subarachnoidea") -AnnotationAssertion(Annotation( "Wikipedia:Subarachnoid_space") Annotation( ) "cavum subarachnoideale") -AnnotationAssertion(Annotation( "BTO:0000230") Annotation( ) "spatium leptomeningeum") -AnnotationAssertion(Annotation( "BTO:0000230") Annotation( "Wikipedia:Subarachnoid_space") Annotation( ) "spatium subarachnoideum") +AnnotationAssertion(Annotation( "BTO:0000230") Annotation( ) "cavitas subarachnoidea") +AnnotationAssertion(Annotation( "Wikipedia:Subarachnoid_space") Annotation( ) "cavum subarachnoideale") +AnnotationAssertion(Annotation( "BTO:0000230") Annotation( ) "spatium leptomeningeum") +AnnotationAssertion(Annotation( "BTO:0000230") Annotation( "Wikipedia:Subarachnoid_space") Annotation( ) "spatium subarachnoideum") AnnotationAssertion(Annotation( "BTO:0000230") "subarachnoid cavity") AnnotationAssertion( "UBERON:0000315") AnnotationAssertion( ) @@ -133997,7 +133552,7 @@ AnnotationAssertion(Annotation( "BTO:0000449") AnnotationAssertion( "CALOHA:TS-0360") AnnotationAssertion( "EFO:0001323") -AnnotationAssertion( "FBbt:00005333") +AnnotationAssertion(Annotation( ) "FBbt:00005333") AnnotationAssertion( "FMA:63919") AnnotationAssertion( "GAID:552") AnnotationAssertion( "MESH:D005333") @@ -134091,7 +133646,7 @@ AnnotationAssertion( "FMA:74596") AnnotationAssertion( "SCTID:328639002") AnnotationAssertion( "SCTID:5023006") -AnnotationAssertion(Annotation( "BTO:0000635") Annotation( ) "medulla ossium flava") +AnnotationAssertion(Annotation( "BTO:0000635") Annotation( ) "medulla ossium flava") AnnotationAssertion(Annotation( "BTO:0000635") "yellow marrow") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000635") "fat marrow") @@ -134178,7 +133733,7 @@ AnnotationAssertion(Annotation( "FMA:85355") "organ mucosa") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:85358") "region of mucosa") -AnnotationAssertion(Annotation( "BTO:0000886") Annotation( "Wikipedia:Mucous_membrane") Annotation( ) "tunica mucosa") +AnnotationAssertion(Annotation( "BTO:0000886") Annotation( "Wikipedia:Mucous_membrane") Annotation( ) "tunica mucosa") AnnotationAssertion( "UBERON:0000344") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mucosa") @@ -134215,8 +133770,8 @@ AnnotationAssertion(Annotation( "FMA:52621") "first division of trigeminal nerve") AnnotationAssertion(Annotation( "FMA:52621") "nervus ophthalmicus (V1)") AnnotationAssertion(Annotation( "FMA:52621") "nervus ophthalmicus (Va)") -AnnotationAssertion(Annotation( "FMA:52621") Annotation( "FMA:TA") Annotation( ) "nervus ophthalmicus [v1]") -AnnotationAssertion(Annotation( "FMA:52621") Annotation( "FMA:TA") Annotation( ) "nervus ophthalmicus [va]") +AnnotationAssertion(Annotation( "FMA:52621") Annotation( "FMA:TA") Annotation( ) "nervus ophthalmicus [v1]") +AnnotationAssertion(Annotation( "FMA:52621") Annotation( "FMA:TA") Annotation( ) "nervus ophthalmicus [va]") AnnotationAssertion(Annotation( "FMA:52621") "ophthalmic division [V1]") AnnotationAssertion(Annotation( "FMA:52621") "ophthalmic division [Va]") AnnotationAssertion(Annotation( "FMA:52621") "ophthalmic division of fifth cranial nerve") @@ -134287,7 +133842,7 @@ AnnotationAssertion( "SCTID:166962007") AnnotationAssertion( "Wikipedia:Nuchal_ligament") AnnotationAssertion(Annotation( "FMA:13427") "ligament of neck") -AnnotationAssertion(Annotation( "FMA:13427") Annotation( ) "ligamentum nuchae") +AnnotationAssertion(Annotation( "FMA:13427") Annotation( ) "ligamentum nuchae") AnnotationAssertion(Annotation( "NCBITaxon:9895") Annotation( "Wikipedia:Paddywhack") "paddywhack") AnnotationAssertion( "uberon") AnnotationAssertion( "paxwax") @@ -134304,7 +133859,8 @@ AnnotationAssertion(Annotation( "parenchymal") AnnotationAssertion(Annotation( "WP") "Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin") AnnotationAssertion(Annotation( "FMA") "the FMA definition is more restrictive, and limits this to solid organs. This would seem to cause problems for the lung parenchyma, except FMA classifies Lung as solid rather than cavitated") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0001539") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0000999") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0001539") AnnotationAssertion( "EHDAA:3015") AnnotationAssertion( "EHDAA:3905") AnnotationAssertion( "EHDAA:3999") @@ -134346,7 +133902,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "pharynx mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "pharynx mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "pharynx organ mucosa") -AnnotationAssertion(Annotation( "FMA:55031") Annotation( "FMA:TA") Annotation( ) "tunica mucosa pharyngea") +AnnotationAssertion(Annotation( "FMA:55031") Annotation( "FMA:TA") Annotation( ) "tunica mucosa pharyngea") AnnotationAssertion( "tunica mucosa pharyngis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001047") "mucous membrane of the pharynx") @@ -134371,7 +133927,7 @@ AnnotationAssertion( "ncithesaurus:Blastocyst") "UMLS:C1281743") AnnotationAssertion( "Wikipedia:Blastocyst") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Blastocyst") Annotation( ) "blastocystis") +AnnotationAssertion(Annotation( "Wikipedia:Blastocyst") Annotation( ) "blastocystis") AnnotationAssertion(Annotation( "FMA:83041") "blastula") AnnotationAssertion( "UBERON:0000358") AnnotationAssertion( ) @@ -134392,7 +133948,7 @@ AnnotationAssertion( "FMA:74595") AnnotationAssertion( "SCTID:328538003") AnnotationAssertion( "SCTID:75330005") -AnnotationAssertion(Annotation( "BTO:0001160") Annotation( ) "medulla ossium rubra") +AnnotationAssertion(Annotation( "BTO:0001160") Annotation( ) "medulla ossium rubra") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "parenchymal red marrow") AnnotationAssertion(Annotation( "BTO:0001160") "red marrow") AnnotationAssertion( "uberon") @@ -134420,8 +133976,8 @@ AnnotationAssertion( "galen:MedullaOfKidney") AnnotationAssertion(Annotation( "OBOL:automatic") "kidney medulla") AnnotationAssertion(Annotation( "OBOL:automatic") "medulla of kidney") -AnnotationAssertion(Annotation( "FMA:74268") Annotation( "FMA:TA") Annotation( ) "medulla renalis") -AnnotationAssertion(Annotation( "FMA:74268") Annotation( "FMA:TA") Annotation( ) "pyramides renales") +AnnotationAssertion(Annotation( "FMA:74268") Annotation( "FMA:TA") Annotation( ) "medulla renalis") +AnnotationAssertion(Annotation( "FMA:74268") Annotation( "FMA:TA") Annotation( ) "pyramides renales") AnnotationAssertion(Annotation( "FMA:86327") Annotation( ) "renal medullae") AnnotationAssertion(Annotation( "FMA:86327") Annotation( ) "renal medullae set") AnnotationAssertion(Annotation( "FMA:74268") Annotation( ) "renal pyramids") @@ -134526,7 +134082,7 @@ AnnotationAssertion(Annotation( "ISBN:0073040584") "syntrophoblast layer") AnnotationAssertion( "uberon") AnnotationAssertion( "syncitiotrophoblast") -AnnotationAssertion(Annotation( "Wikipedia:Syncytiotrophoblast") Annotation( ) "syncitiotrophoblastus") +AnnotationAssertion(Annotation( "Wikipedia:Syncytiotrophoblast") Annotation( ) "syncitiotrophoblastus") AnnotationAssertion( "syntrophoblast") AnnotationAssertion( "UBERON:0000371") AnnotationAssertion(rdfs:label "syncytiotrophoblast") @@ -134562,14 +134118,14 @@ AnnotationAssertion(Annotation( "FMA:52996") "mandibular nerve [V3]") AnnotationAssertion(Annotation( "FMA:52996") "mandibular nerve [Vc]") AnnotationAssertion(Annotation( "FMA:52996") "nervus mandibularis [Vc; V3]") -AnnotationAssertion(Annotation( "FMA:52996") Annotation( "FMA:TA") Annotation( ) "nervus mandibularis [v3]") -AnnotationAssertion(Annotation( "FMA:52996") Annotation( "FMA:TA") Annotation( ) "nervus mandibularis [vc]") +AnnotationAssertion(Annotation( "FMA:52996") Annotation( "FMA:TA") Annotation( ) "nervus mandibularis [v3]") +AnnotationAssertion(Annotation( "FMA:52996") Annotation( "FMA:TA") Annotation( ) "nervus mandibularis [vc]") AnnotationAssertion(Annotation( "AAO:0010688") "ramus mandibularis (ramus V3)") AnnotationAssertion(Annotation( "FMA:52996") "third division of fifth cranial nerve") AnnotationAssertion(Annotation( "FMA:52996") "third division of trigeminal nerve") AnnotationAssertion(Annotation( "MA:0001101") "trigeminal V nerve mandibular division") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Mandibular_nerve") Annotation( ) "n. mandibularis") +AnnotationAssertion(Annotation( "Wikipedia:Mandibular_nerve") Annotation( ) "n. mandibularis") AnnotationAssertion(Annotation( "BTO:0001375") "nervus mandibularis") AnnotationAssertion(Annotation( "EMAPA:17798") "trigeminal nerve mandibular division") AnnotationAssertion( "UBERON:0000375") @@ -134615,7 +134171,7 @@ AnnotationAssertion( "thigh") AnnotationAssertion(Annotation( "MA:0000052") Annotation( ) "upper leg") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thigh") Annotation( ) "femur") +AnnotationAssertion(Annotation( "Wikipedia:Thigh") Annotation( ) "femur") AnnotationAssertion( "UBERON:0000376") AnnotationAssertion( ) AnnotationAssertion( ) @@ -134651,14 +134207,14 @@ AnnotationAssertion(Annotation( "FMA:52724") "maxillary nerve [V2]") AnnotationAssertion(Annotation( "FMA:52724") "maxillary nerve [Vb]") AnnotationAssertion(Annotation( "FMA:52724") "nervus maxillaris (Vb; V2)") -AnnotationAssertion(Annotation( "FMA:52724") Annotation( "FMA:TA") Annotation( ) "nervus maxillaris [v2]") -AnnotationAssertion(Annotation( "FMA:52724") Annotation( "FMA:TA") Annotation( ) "nervus maxillaris [vb]") +AnnotationAssertion(Annotation( "FMA:52724") Annotation( "FMA:TA") Annotation( ) "nervus maxillaris [v2]") +AnnotationAssertion(Annotation( "FMA:52724") Annotation( "FMA:TA") Annotation( ) "nervus maxillaris [vb]") AnnotationAssertion(Annotation( "AAO:0010670") "ramus maxillaris (ramus V2)") AnnotationAssertion(Annotation( "FMA:52724") "second division of fifth cranial nerve") AnnotationAssertion(Annotation( "FMA:52724") "second division of trigeminal nerve") AnnotationAssertion(Annotation( "MA:0001103") "trigeminal V nerve maxillary division") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Maxillary_nerve") Annotation( ) "n. maxillaris") +AnnotationAssertion(Annotation( "Wikipedia:Maxillary_nerve") Annotation( ) "n. maxillaris") AnnotationAssertion(Annotation( "BTO:0001378") "nervus maxillaris") AnnotationAssertion(Annotation( "EMAPA:17799") "trigeminal nerve maxillary division") AnnotationAssertion( "UBERON:0000377") @@ -134692,7 +134248,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "tongue skeletal muscle") AnnotationAssertion(Annotation( "OBOL:automatic") "tongue skeletal muscle tissue") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Muscles_of_tongue") Annotation( ) "musculi linguae") +AnnotationAssertion(Annotation( "Wikipedia:Muscles_of_tongue") Annotation( ) "musculi linguae") AnnotationAssertion( "UBERON:0000378") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tongue muscle") @@ -134724,7 +134280,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "trachea organ mucosa") AnnotationAssertion(Annotation( "FMA:7471") "tracheal mucous membrane") AnnotationAssertion(Annotation( "FMA:7471") "tunica mucosa (tracheae)") -AnnotationAssertion(Annotation( "FMA:7471") Annotation( "FMA:TA") Annotation( ) "tunica mucosa tracheae") +AnnotationAssertion(Annotation( "FMA:7471") Annotation( "FMA:TA") Annotation( ) "tunica mucosa tracheae") AnnotationAssertion(Annotation( "OBOL:automatic") "windpipe mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "windpipe mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "windpipe mucous membrane") @@ -134747,7 +134303,7 @@ AnnotationAssertion( "SCTID:399916008") AnnotationAssertion(Annotation( "ncithesaurus:Apocrine_Sweat_Gland") "UMLS:C0930083") AnnotationAssertion( "Wikipedia:Apocrine_sweat_gland") -AnnotationAssertion(Annotation( "Wikipedia:Apocrine_sweat_gland") Annotation( ) "glandula sudorifera apocrina") +AnnotationAssertion(Annotation( "Wikipedia:Apocrine_sweat_gland") Annotation( ) "glandula sudorifera apocrina") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000382") AnnotationAssertion( ) @@ -134881,7 +134437,7 @@ AnnotationAssertion(Annotation( "MA:0001085") "vestibulocochlear VIII ganglion cochlear component") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001688") "ganglion cochlearis") -AnnotationAssertion(Annotation( "Wikipedia:Spiral_ganglion") Annotation( ) "ganglion spirale") +AnnotationAssertion(Annotation( "Wikipedia:Spiral_ganglion") Annotation( ) "ganglion spirale") AnnotationAssertion(Annotation( "BTO:0001688") "ganglion spirale cochleae") AnnotationAssertion(Annotation( "BTO:0001688") "spiral ganglion of cochlea") AnnotationAssertion(Annotation( "EMAPA:17572") "vestibulocochlear ganglion cochlear component") @@ -134990,7 +134546,7 @@ AnnotationAssertion( "FMA:59644") "vestibular part of nasal cavity") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001761") "vestibulum nasale") -AnnotationAssertion(Annotation( "BTO:0001761") Annotation( "Wikipedia:Nasal_vestibule") Annotation( ) "vestibulum nasi") +AnnotationAssertion(Annotation( "BTO:0001761") Annotation( "Wikipedia:Nasal_vestibule") Annotation( ) "vestibulum nasi") AnnotationAssertion( "UBERON:0000402") AnnotationAssertion(rdfs:label "nasal vestibule") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png"^^xsd:anyURI) @@ -135012,7 +134568,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Scalp") AnnotationAssertion( "galen:Scalp") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Scalp") Annotation( ) "scalpus") +AnnotationAssertion(Annotation( "Wikipedia:Scalp") Annotation( ) "scalpus") AnnotationAssertion( "UBERON:0000403") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "scalp") @@ -135042,7 +134598,7 @@ AnnotationAssertion(Annotation( "FMA:6258") "sympathetic chain") AnnotationAssertion(Annotation( "Wikipedia:Sympathetic_trunk") "sympathetic ganglionic chain") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sympathetic_trunk") Annotation( ) "truncus sympathicus") +AnnotationAssertion(Annotation( "Wikipedia:Sympathetic_trunk") Annotation( ) "truncus sympathicus") AnnotationAssertion( "UBERON:0000407") AnnotationAssertion(rdfs:label "sympathetic trunk") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png"^^xsd:anyURI) @@ -135098,7 +134654,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of bronchi") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of bronchial trunk") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of bronchus") -AnnotationAssertion(Annotation( "FMA:62652") Annotation( "FMA:TA") Annotation( ) "tunica mucosa bronchi") +AnnotationAssertion(Annotation( "FMA:62652") Annotation( "FMA:TA") Annotation( ) "tunica mucosa bronchi") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000410") AnnotationAssertion(rdfs:label "bronchial mucosa") @@ -135130,7 +134686,7 @@ AnnotationAssertion(Annotation( "BTO:0001858") "papilla dermatis") AnnotationAssertion(Annotation( "BTO:0001858") "papilla dermis") AnnotationAssertion(Annotation( "BTO:0001858") "papilla of corium") -AnnotationAssertion(Annotation( "Wikipedia:Dermal_papillae") Annotation( ) "papillae dermis") +AnnotationAssertion(Annotation( "Wikipedia:Dermal_papillae") Annotation( ) "papillae dermis") AnnotationAssertion(Annotation( "BTO:0001858") "skin papilla") AnnotationAssertion( "UBERON:0000412") AnnotationAssertion( ) @@ -135149,7 +134705,7 @@ AnnotationAssertion( "MA:th") "EMAPA:37913") AnnotationAssertion( "FMA:62888") AnnotationAssertion( "Wikipedia:Mucous_gland") -AnnotationAssertion(Annotation( "Wikipedia:Mucous_gland") Annotation( ) "glandula mucosa") +AnnotationAssertion(Annotation( "Wikipedia:Mucous_gland") Annotation( ) "glandula mucosa") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001979") "muciparous gland") AnnotationAssertion( "mucous secreting gland") @@ -135185,7 +134741,7 @@ AnnotationAssertion( "Wikipedia:Myoepithelial_cell") AnnotationAssertion(Annotation( "FMA:67805") "myo-epithelium") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Myoepithelial_cell") Annotation( ) "myoepitheliocytus") +AnnotationAssertion(Annotation( "Wikipedia:Myoepithelial_cell") Annotation( ) "myoepitheliocytus") AnnotationAssertion( "UBERON:0000420") AnnotationAssertion(rdfs:label "myoepithelium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -135205,8 +134761,8 @@ AnnotationAssertion( "SCTID:361699008") AnnotationAssertion(Annotation( "ncithesaurus:Eccrine_Sweat_Gland") "UMLS:C0013492") AnnotationAssertion( "Wikipedia:Eccrine_sweat_gland") -AnnotationAssertion(Annotation( "Wikipedia:Eccrine_sweat_gland") Annotation( ) "glandula sudorifera eccrina") -AnnotationAssertion(Annotation( "Wikipedia:Eccrine_sweat_gland") Annotation( ) "glandula sudorifera merocrina") +AnnotationAssertion(Annotation( "Wikipedia:Eccrine_sweat_gland") Annotation( ) "glandula sudorifera eccrina") +AnnotationAssertion(Annotation( "Wikipedia:Eccrine_sweat_gland") Annotation( ) "glandula sudorifera merocrina") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:59154") "eccrine gland") AnnotationAssertion( "merocrine sweat gland") @@ -135264,7 +134820,7 @@ AnnotationAssertion( "FMA:77597") "enteric nerve plexus") AnnotationAssertion(Annotation( "MA:0001147") "intrinsic nerve plexus") AnnotationAssertion(Annotation( "BTO:0002437") "plexus entericus") -AnnotationAssertion(Annotation( "FMA:77597") Annotation( "FMA:TA") Annotation( ) "plexus nervosus entericus") +AnnotationAssertion(Annotation( "FMA:77597") Annotation( "FMA:TA") Annotation( ) "plexus nervosus entericus") AnnotationAssertion(Annotation( "FMA:77597") "sympathetic enteric nerve plexus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000429") @@ -135294,7 +134850,7 @@ AnnotationAssertion( "Wikipedia:Arachnoid_trabeculae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "arachnoid trabeculae") -AnnotationAssertion(Annotation( ) "trabecula arachnoideum") +AnnotationAssertion(Annotation( ) "trabecula arachnoideum") AnnotationAssertion( "UBERON:0000439") AnnotationAssertion(rdfs:label "arachnoid trabecula") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -135362,7 +134918,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (lymphoid follicle) -AnnotationAssertion(Annotation( "https://github.com/obophenotype/uberon/issues/6") Annotation( "https://github.com/obophenotype/uberon/issues/7") ".") AnnotationAssertion( "introducing part_of to 'cortex of lymph node' as in issue 7 introduces equivalencies; the part_of has instead been added to 'lymph node follicle'") AnnotationAssertion( "BTO:0002684") AnnotationAssertion( "FMA:55222") @@ -135379,6 +134934,8 @@ AnnotationAssertion(Annotation( "BTO:0002684") "nodulus lymphoideus") AnnotationAssertion( "UBERON:0000444") AnnotationAssertion(rdfs:label "lymphoid follicle") +AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/6"^^xsd:anyURI) +AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/7"^^xsd:anyURI) SubClassOf(Annotation( "FMA") ) # Class: (septum of telencephalon) @@ -135399,15 +134956,15 @@ AnnotationAssertion( "MA:0000924") AnnotationAssertion(Annotation( "BIRNLEX:963") "UMLS:C0752060") AnnotationAssertion(Annotation( "BIRNLEX:963") "neuronames:255") -AnnotationAssertion(Annotation( "FMA:61842") Annotation( "FMA:TA") Annotation( ) "area septalis") +AnnotationAssertion(Annotation( "FMA:61842") Annotation( "FMA:TA") Annotation( ) "area septalis") AnnotationAssertion(Annotation( "FMA:61842") "septal area") AnnotationAssertion(Annotation( "FMA:61842") "septum (NN)") AnnotationAssertion(Annotation( "FMA:61842") "telencephalon septum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:255") Annotation( ) "massa praecommissuralis") +AnnotationAssertion(Annotation( "NeuroNames:255") Annotation( ) "massa praecommissuralis") AnnotationAssertion(Annotation( "BAMS:SEP") "septal region") -AnnotationAssertion(Annotation( "NeuroNames:255") Annotation( ) "septum pellucidum (BNA,PNA)") -AnnotationAssertion(Annotation( "NeuroNames:255") Annotation( ) "septum telencephali") +AnnotationAssertion(Annotation( "NeuroNames:255") Annotation( ) "septum pellucidum (BNA,PNA)") +AnnotationAssertion(Annotation( "NeuroNames:255") Annotation( ) "septum telencephali") AnnotationAssertion( "UBERON:0000446") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "septum of telencephalon") @@ -135464,7 +135021,7 @@ AnnotationAssertion(Annotation( "BTO:0002996") AnnotationAssertion( "FMA:70527") AnnotationAssertion(Annotation( "FMA:70527") "cavernous branch of cavernous part of internal carotid artery") -AnnotationAssertion(Annotation( "FMA:70527") Annotation( "FMA:TA") Annotation( ) "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)") +AnnotationAssertion(Annotation( "FMA:70527") Annotation( "FMA:TA") Annotation( ) "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000457") AnnotationAssertion(rdfs:label "cavernous artery") @@ -135515,7 +135072,7 @@ AnnotationAssertion( "CARO:0000004") AnnotationAssertion( "EHDAA2:0003004") AnnotationAssertion( "EMAPA:35178") -AnnotationAssertion( "FBbt:00007019") +AnnotationAssertion(Annotation( ) "FBbt:00007019") AnnotationAssertion( "FMA:9669") AnnotationAssertion( "HAO:0000004") AnnotationAssertion( "MA:0002450") @@ -135555,7 +135112,7 @@ AnnotationAssertion( "BILA:0000005") AnnotationAssertion( "CARO:0000005") AnnotationAssertion( "EHDAA2:0003005") -AnnotationAssertion( "FBbt:00007017") +AnnotationAssertion(Annotation( ) "FBbt:00007017") AnnotationAssertion( "FMA:5897") AnnotationAssertion( "HAO:0000005") AnnotationAssertion( "NCIT:C94478") @@ -135586,7 +135143,7 @@ AnnotationAssertion( "BILA:0000006") AnnotationAssertion( "CARO:0000006") AnnotationAssertion( "EHDAA2:0003006") -AnnotationAssertion( "FBbt:00007016") +AnnotationAssertion(Annotation( ) "FBbt:00007016") AnnotationAssertion( "FMA:67165") AnnotationAssertion( "HAO:0000006") AnnotationAssertion( "TAO:0001836") @@ -135612,7 +135169,7 @@ AnnotationAssertion( "BILA:0000007") AnnotationAssertion( "CARO:0000007") AnnotationAssertion( "EHDAA2:0003007") -AnnotationAssertion( "FBbt:00007015") +AnnotationAssertion(Annotation( ) "FBbt:00007015") AnnotationAssertion( "FMA:67112") AnnotationAssertion( "HAO:0000007") AnnotationAssertion( "TAO:0001835") @@ -135646,10 +135203,10 @@ AnnotationAssertion( "EHDAA:392") AnnotationAssertion( "EMAPA:16103") AnnotationAssertion( "EV:0100000") -AnnotationAssertion( "FBbt:00004856") +AnnotationAssertion(Annotation( ) "FBbt:00004856") AnnotationAssertion( "FMA:7149") AnnotationAssertion( "HAO:0000011") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "IDOMAL:0002460") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0002460") AnnotationAssertion( "MA:0000003") AnnotationAssertion( "NCIT:C12919") AnnotationAssertion( "SCTID:278195005") @@ -135702,7 +135259,7 @@ AnnotationAssertion( "EHDAA:1") AnnotationAssertion( "EMAPA:25765") AnnotationAssertion( "EV:0100016") -AnnotationAssertion( "FBbt:00000001") +AnnotationAssertion(Annotation( ) "FBbt:00000001") AnnotationAssertion( "FMA:256135") AnnotationAssertion( "HAO:0000012") AnnotationAssertion( "NCIT:C13041") @@ -135772,7 +135329,7 @@ AnnotationAssertion( "EHDAA:8146") AnnotationAssertion( "EMAPA:17972") AnnotationAssertion( "EV:0100102") -AnnotationAssertion( "FBbt:00004928") +AnnotationAssertion(Annotation( ) "FBbt:00004928") AnnotationAssertion( "FMA:7210") AnnotationAssertion( "GAID:396") AnnotationAssertion( "HAO:0001007") @@ -135797,7 +135354,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BTO:0001363") "orchis") AnnotationAssertion(Annotation( ) "testes") -AnnotationAssertion(Annotation( "BTO:0001363") Annotation( ) "testiculus") +AnnotationAssertion(Annotation( "BTO:0001363") Annotation( ) "testiculus") AnnotationAssertion( "UBERON:0000473") AnnotationAssertion( ) AnnotationAssertion( ) @@ -135815,6 +135372,7 @@ DisjointClasses( (female reproductive system) AnnotationAssertion(Annotation( "MP:0001119") Annotation( "Wikipedia:Female_genitalia") Annotation( "http://orcid.org/0000-0002-6601-2165") "The organs and associated structures associated with bearing offspring in a female animal.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000726") Annotation( "VHOG") Annotation( "ISBN:978-0792383369 Lombardi J, Comparative vertebrate reproduction (1998) p.43") Annotation( "http://bgee.unil.ch/") "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]") AnnotationAssertion( "BTO:0000083") AnnotationAssertion( "CALOHA:TS-1303") @@ -135823,7 +135381,7 @@ AnnotationAssertion( "EHDAA:8116") AnnotationAssertion( "EMAPA:17959") AnnotationAssertion( "EV:0100110") -AnnotationAssertion( "FBbt:00004864") +AnnotationAssertion(Annotation( ) "FBbt:00004864") AnnotationAssertion( "FMA:45663") AnnotationAssertion( "GAID:364") AnnotationAssertion( "HAO:0000324") @@ -135852,6 +135410,7 @@ AnnotationAssertion(Annotation( "BTO:0000083") "systema genitale femininum") AnnotationAssertion( "UBERON:0000474") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "female reproductive system") @@ -135876,7 +135435,7 @@ AnnotationAssertion( "EFO:0000808") AnnotationAssertion( "EHDAA2:0003032") AnnotationAssertion( "EMAPA:36031") -AnnotationAssertion( "FBbt:00007009") +AnnotationAssertion(Annotation( ) "FBbt:00007009") AnnotationAssertion( "FMA:7153") AnnotationAssertion( "HAO:0000032") AnnotationAssertion( "MA:0002433") @@ -135918,7 +135477,7 @@ AnnotationAssertion( "BILA:0000040") AnnotationAssertion( "CARO:0000040") AnnotationAssertion( "EHDAA2:0003040") -AnnotationAssertion( "FBbt:00007013") +AnnotationAssertion(Annotation( ) "FBbt:00007013") AnnotationAssertion( "FMA:63863") AnnotationAssertion( "HAO:0000040") AnnotationAssertion( "TAO:0000382") @@ -135940,8 +135499,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "FBbt:00007277") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "IDOMAL:0002461") +AnnotationAssertion(Annotation( ) "FBbt:00007277") AnnotationAssertion( "VHOG:0001737") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000477") @@ -135960,7 +135518,7 @@ AnnotationAssertion( "CARO:0000042") AnnotationAssertion( "EHDAA2:0003042") AnnotationAssertion( "EHDAA:46") -AnnotationAssertion( "FBbt:00005835") +AnnotationAssertion(Annotation( ) "FBbt:00005835") AnnotationAssertion( "FMA:85537") AnnotationAssertion( "HAO:0000042") AnnotationAssertion( "NCIT:C34055") @@ -135999,7 +135557,7 @@ AnnotationAssertion( "CARO:0000043") AnnotationAssertion( "EHDAA2:0003043") AnnotationAssertion( "EMAPA:35868") -AnnotationAssertion( "FBbt:00007003") +AnnotationAssertion(Annotation( ) "FBbt:00007003") AnnotationAssertion( "FMA:9637") AnnotationAssertion( "HAO:0000043") AnnotationAssertion( "MA:0003002") @@ -136037,7 +135595,7 @@ AnnotationAssertion( "BILA:0000055") AnnotationAssertion( "CARO:0000055") AnnotationAssertion( "EHDAA2:0003055") -AnnotationAssertion( "FBbt:00007010") +AnnotationAssertion(Annotation( ) "FBbt:00007010") AnnotationAssertion( "HAO:0000055") AnnotationAssertion( "TAO:0001488") AnnotationAssertion( "TGMA:0001847") @@ -136067,7 +135625,7 @@ AnnotationAssertion( "CARO:0000066") AnnotationAssertion( "EHDAA2:0003066") AnnotationAssertion( "EMAPA:32738") -AnnotationAssertion( "FBbt:00007005") +AnnotationAssertion(Annotation( ) "FBbt:00007005") AnnotationAssertion( "FMA:9639") AnnotationAssertion( "GAID:402") AnnotationAssertion( "HAO:0000066") @@ -136135,7 +135693,7 @@ AnnotationAssertion( "BILA:0000068") AnnotationAssertion( "CARO:0000068") AnnotationAssertion( "EHDAA2_RETIRED:0003068") -AnnotationAssertion( "FBbt:00007027") +AnnotationAssertion(Annotation( ) "FBbt:00007027") AnnotationAssertion( "FMA:45567") AnnotationAssertion( "HAO:0000068") AnnotationAssertion( "NCIT:C33552") @@ -136401,10 +135959,10 @@ AnnotationAssertion( "EHDAA2_RETIRED:0003236") AnnotationAssertion( "EHDAA:38") AnnotationAssertion( "EMAPA:16039") -AnnotationAssertion( "FBbt:00000052") +AnnotationAssertion(Annotation( ) "FBbt:00000052") AnnotationAssertion( "FMA:69068") AnnotationAssertion( "GAID:963") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "IDOMAL:0000646") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0000646") AnnotationAssertion( "MAT:0000226") AnnotationAssertion( "MESH:D004622") AnnotationAssertion( "MIAA:0000019") @@ -136440,7 +135998,7 @@ AnnotationAssertion( "BILA:0000035") AnnotationAssertion( "BTO:0000556") AnnotationAssertion( "EMAPA:36033") -AnnotationAssertion( "FBbt:00000110") +AnnotationAssertion(Annotation( ) "FBbt:00000110") AnnotationAssertion( "FMA:69069") AnnotationAssertion( "GAID:1303") AnnotationAssertion( "MESH:D005855") @@ -136482,7 +136040,7 @@ AnnotationAssertion( "EHDAA2:0000428") AnnotationAssertion( "EMAPA:16069") AnnotationAssertion( "EV:0100003") -AnnotationAssertion( "FBbt:00000111") +AnnotationAssertion(Annotation( ) "FBbt:00000111") AnnotationAssertion( "FMA:69070") AnnotationAssertion( "GAID:1304") AnnotationAssertion( "MAT:0000155") @@ -136523,7 +136081,7 @@ AnnotationAssertion( "EHDAA2:0000436") AnnotationAssertion( "EMAPA:16062") AnnotationAssertion( "EV:0100005") -AnnotationAssertion( "FBbt:00000125") +AnnotationAssertion(Annotation( ) "FBbt:00000125") AnnotationAssertion( "FMA:69071") AnnotationAssertion( "GAID:1305") AnnotationAssertion( "MAT:0000175") @@ -136571,7 +136129,7 @@ AnnotationAssertion( "EHDAA:183") AnnotationAssertion( "EMAPA:16083") AnnotationAssertion( "EV:0100006") -AnnotationAssertion( "FBbt:00000126") +AnnotationAssertion(Annotation( ) "FBbt:00000126") AnnotationAssertion( "FMA:69072") AnnotationAssertion( "GAID:522") AnnotationAssertion( "MAT:0000174") @@ -136613,7 +136171,7 @@ AnnotationAssertion(Annotation( "BTO:0004224") AnnotationAssertion( "EHDAA2:0001929") AnnotationAssertion( "EMAPA:16263") -AnnotationAssertion( "FBbt:00000439") +AnnotationAssertion(Annotation( ) "FBbt:00000439") AnnotationAssertion( "FMA:295846") AnnotationAssertion( "NCIT:C34306") AnnotationAssertion( "TAO:0001290") @@ -136652,7 +136210,7 @@ AnnotationAssertion( "AAO:0011087") AnnotationAssertion( "EHDAA2:0000121") AnnotationAssertion( "EMAPA:25038") -AnnotationAssertion( "FBbt:00000123") +AnnotationAssertion(Annotation( ) "FBbt:00000123") AnnotationAssertion( "NCIT:C34278") AnnotationAssertion( "TAO:0000066") AnnotationAssertion(Annotation( "ncithesaurus:Proctodeum") "UMLS:C0231054") @@ -136703,9 +136261,9 @@ AnnotationAssertion( "OBOL:automatic") "pharynx muscle organ") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "TAO:0000172") Annotation( ) "branchial muscles") -AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_muscles") Annotation( ) "musculi pharyngis") +AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_muscles") Annotation( ) "musculi pharyngis") AnnotationAssertion(Annotation( "BTO:0001048") "musculus pharyngis") -AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_muscles") Annotation( ) "tunica muscularis pharyngis") +AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_muscles") Annotation( ) "tunica muscularis pharyngis") AnnotationAssertion( "UBERON:0000933") AnnotationAssertion( ) AnnotationAssertion( ) @@ -136719,9 +136277,9 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "Wikipedia:Imaginal_disc") "One of the parts of a holometabolous insect larva that will become a portion of the outside of the adult insect during the pupal transformation.") AnnotationAssertion( "BTO:0004658") -AnnotationAssertion( "FBbt:00001761") +AnnotationAssertion(Annotation( ) "FBbt:00001761") AnnotationAssertion( "MAT:0000064") -AnnotationAssertion( "MESH:D060227") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D060227") AnnotationAssertion( "MIAA:0000064") AnnotationAssertion( "Wikipedia:Imaginal_disc") AnnotationAssertion( "uberon") @@ -136772,8 +136330,8 @@ AnnotationAssertion( "BIRNLEX:1640") "neuronames:289") AnnotationAssertion(Annotation( "AAO:0010345") "02 optic nerve") AnnotationAssertion( "cranial II") -AnnotationAssertion(Annotation( ) "nervus opticus") -AnnotationAssertion(Annotation( "FMA:50863") Annotation( "FMA:TA") Annotation( ) "nervus opticus [II]") +AnnotationAssertion(Annotation( ) "nervus opticus") +AnnotationAssertion(Annotation( "FMA:50863") Annotation( "FMA:TA") Annotation( ) "nervus opticus [II]") AnnotationAssertion(Annotation( "EHDAA2:0001313") "optic II") AnnotationAssertion(Annotation( "EHDAA2:0001313") "optic II nerve") AnnotationAssertion( "optic nerve [II]") @@ -136833,7 +136391,7 @@ AnnotationAssertion( "anterior intestine") AnnotationAssertion(Annotation( "BTO:0001307") "gaster") AnnotationAssertion( "mesenteron") -AnnotationAssertion(Annotation( "Wikipedia:Stomach") Annotation( ) "ventriculus") +AnnotationAssertion(Annotation( "Wikipedia:Stomach") Annotation( ) "ventriculus") AnnotationAssertion( "UBERON:0000945") AnnotationAssertion( ) AnnotationAssertion( ) @@ -136924,7 +136482,7 @@ AnnotationAssertion( "trunk of systemic arterial tree") AnnotationAssertion(Annotation( "Wikipedia:Aorta#In_other_animals") Annotation( "ZFA:0000014") Annotation( ) "dorsal aorta") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Aorta") Annotation( ) "arteria maxima") +AnnotationAssertion(Annotation( "Wikipedia:Aorta") Annotation( ) "arteria maxima") AnnotationAssertion( "UBERON:0000947") AnnotationAssertion( ) AnnotationAssertion( ) @@ -137013,7 +136571,7 @@ AnnotationAssertion( "EHDAA2:0002224") AnnotationAssertion( "EMAPA:35306") AnnotationAssertion( "EV:0100128") -AnnotationAssertion( "FBbt:00005068") +AnnotationAssertion(Annotation( ) "FBbt:00005068") AnnotationAssertion( "FMA:9668") AnnotationAssertion( "GAID:439") AnnotationAssertion( "MA:0000012") @@ -137092,7 +136650,7 @@ AnnotationAssertion( "EHDAA:6485") AnnotationAssertion( "EMAPA:16894") AnnotationAssertion( "EV:0100164") -AnnotationAssertion( "FBbt:00005095") +AnnotationAssertion(Annotation( ) "FBbt:00005095") AnnotationAssertion( "FMA:50801") AnnotationAssertion( "GAID:571") AnnotationAssertion( "HBA:4005") @@ -137180,8 +136738,8 @@ AnnotationAssertion(Annotation( "BTO:0000233") Annotation( "FMA:61830") "cortex of cerebral hemisphere") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000233") "brain cortex") -AnnotationAssertion(Annotation( "NeuroNames:39") Annotation( ) "cortex cerebralis") -AnnotationAssertion(Annotation( "Wikipedia:Cerebral_cortex") Annotation( ) "cortex cerebri") +AnnotationAssertion(Annotation( "NeuroNames:39") Annotation( ) "cortex cerebralis") +AnnotationAssertion(Annotation( "Wikipedia:Cerebral_cortex") Annotation( ) "cortex cerebri") AnnotationAssertion(Annotation( "NeuroNames:39") "cortical plate (CTXpl)") AnnotationAssertion(Annotation( "NeuroNames:39") "cortical plate (areas)") AnnotationAssertion(Annotation( "BTO:0000233") "pallium of the brain") @@ -137265,12 +136823,12 @@ AnnotationAssertion( "XAO:0004071") AnnotationAssertion( "ZFA:0000556") AnnotationAssertion(Annotation( "BIRNLEX:1416") "neuronames:459") -AnnotationAssertion(Annotation( "Wikipedia:Optic_chiasm") Annotation( ) "chiasma opticum") +AnnotationAssertion(Annotation( "Wikipedia:Optic_chiasm") Annotation( ) "chiasma opticum") AnnotationAssertion(Annotation( "FMA:62045") "decussation of optic nerve fibers") AnnotationAssertion(Annotation( "Wikipedia:Optic_chiasm") "optic chiasm") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:459") Annotation( ) "chiasma") -AnnotationAssertion(Annotation( "NeuroNames:459") Annotation( ) "chiasma nervorum opticorum") +AnnotationAssertion(Annotation( "NeuroNames:459") Annotation( ) "chiasma") +AnnotationAssertion(Annotation( "NeuroNames:459") Annotation( ) "chiasma nervorum opticorum") AnnotationAssertion(Annotation( "NeuroNames:459") "optic chiasm (Rufus of Ephesus)") AnnotationAssertion( "UBERON:0000959") AnnotationAssertion( ) @@ -137297,7 +136855,7 @@ AnnotationAssertion(Annotation( "VHOG:0000515") AnnotationAssertion( "Wikipedia:Thoracic_ganglion") AnnotationAssertion(Annotation( "OBOL:automatic") "ganglion of thorax") -AnnotationAssertion(Annotation( "FMA:6471") Annotation( "FMA:TA") Annotation( ) "ganglion thoracicum splanchnicum") +AnnotationAssertion(Annotation( "FMA:6471") Annotation( "FMA:TA") Annotation( ) "ganglion thoracicum splanchnicum") AnnotationAssertion(Annotation( "MA:0001159") "thoracic paravertebral ganglion") AnnotationAssertion( "thoracic splanchnic ganglion") AnnotationAssertion( "thoracic sympathetic ganglion") @@ -137325,7 +136883,7 @@ AnnotationAssertion( "FMA:5859") "cervical nerve") AnnotationAssertion( "cervical nerve tree") AnnotationAssertion( "cervical spinal nerve") -AnnotationAssertion(Annotation( "FMA:5859") Annotation( "FMA:TA") Annotation( ) "nervus cervicalis") +AnnotationAssertion(Annotation( "FMA:5859") Annotation( "FMA:TA") Annotation( ) "nervus cervicalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0000962") AnnotationAssertion( ) @@ -137337,7 +136895,7 @@ EquivalentClasses( ObjectIntersec # Class: (head sensillum) AnnotationAssertion( "this term should be ceded to the arthropod anatomy ontology") -AnnotationAssertion( "FBbt:00004114") +AnnotationAssertion(Annotation( ) "FBbt:00004114") AnnotationAssertion( "MAT:0000204") AnnotationAssertion( "MIAA:0000204") AnnotationAssertion( "uberon") @@ -137517,7 +137075,7 @@ AnnotationAssertion( "CALOHA:TS-0309") AnnotationAssertion( "EFO:0000827") AnnotationAssertion( "EV:0100336") -AnnotationAssertion( "FBbt:00005162") +AnnotationAssertion(Annotation( ) "FBbt:00005162") AnnotationAssertion( "GAID:69") AnnotationAssertion( "MAT:0000140") AnnotationAssertion( "MESH:D005123") @@ -137545,7 +137103,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "PMID:21062451") "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells.") AnnotationAssertion( "ommatidial") AnnotationAssertion( "BTO:0001922") -AnnotationAssertion( "FBbt:00004510") +AnnotationAssertion(Annotation( ) "FBbt:00004510") AnnotationAssertion( "HAO:0000666") AnnotationAssertion( "MAT:0000143") AnnotationAssertion( "MIAA:0000143") @@ -137584,7 +137142,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Neck") AnnotationAssertion( "galen:Neck") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neck") Annotation( ) "collum") +AnnotationAssertion(Annotation( "Wikipedia:Neck") Annotation( ) "collum") AnnotationAssertion(Annotation( "FMA:7155") "neck (volume)") AnnotationAssertion( "UBERON:0000974") AnnotationAssertion( ) @@ -137823,9 +137381,9 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001284") "femoral bone") AnnotationAssertion(Annotation( "ISBN:0226313409") Annotation( ) "mesomere 1 of pevlic appendage") -AnnotationAssertion(Annotation( "BTO:0001284") Annotation( ) "os femorale") -AnnotationAssertion(Annotation( "BTO:0001284") Annotation( ) "os femoris") -AnnotationAssertion(Annotation( "Wikipedia:Femur") Annotation( ) "os longissimum") +AnnotationAssertion(Annotation( "BTO:0001284") Annotation( ) "os femorale") +AnnotationAssertion(Annotation( "BTO:0001284") Annotation( ) "os femoris") +AnnotationAssertion(Annotation( "Wikipedia:Femur") Annotation( ) "os longissimum") AnnotationAssertion(Annotation( "ISBN:0226313409") Annotation( ) "proximal metapterygial mesomere of pelvic appendage") AnnotationAssertion(Annotation( "ISBN:0226313409") Annotation( ) "proximal metapterygial mesomere of pelvic fin") AnnotationAssertion( "UBERON:0000981") @@ -137902,7 +137460,7 @@ AnnotationAssertion( "AAO:0000221") Annotation( "MA:th") Annotation( "http://en.wiktionary.org/wiki/metapodial") "hind metapodium") AnnotationAssertion(Annotation( "FMA:24997") "metatarsal part of foot") AnnotationAssertion(Annotation( "FMA:24997") "metatarsal region") -AnnotationAssertion(Annotation( "FMA:24997") Annotation( "FMA:TA") Annotation( ) "regio metatarsalis") +AnnotationAssertion(Annotation( "FMA:24997") Annotation( "FMA:TA") Annotation( ) "regio metatarsalis") AnnotationAssertion(Annotation( "NCBITaxon:9788") Annotation( "http://orcid.org/0000-0002-6601-2165") "hindlimb cannon region") AnnotationAssertion(Annotation( "NCBITaxon:9788") Annotation( "http://orcid.org/0000-0002-6601-2165") "hindlimb equine cannon region") AnnotationAssertion( "uberon") @@ -137929,7 +137487,7 @@ AnnotationAssertion( "ncithesaurus:Axillary_Vein") "UMLS:C0004456") AnnotationAssertion( "Wikipedia:Axillary_vein") AnnotationAssertion( "galen:AxillaryVein") -AnnotationAssertion(Annotation( "Wikipedia:Axillary_vein") Annotation( ) "vena axillaris") +AnnotationAssertion(Annotation( "Wikipedia:Axillary_vein") Annotation( ) "vena axillaris") AnnotationAssertion( "uberon") AnnotationAssertion( "subcostal vein") AnnotationAssertion( "UBERON:0000985") @@ -137978,7 +137536,7 @@ AnnotationAssertion(Annotation( "ncithesaurus:Pons_Varolii") "pons Varolii") AnnotationAssertion( "pons of Varolius") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:547") Annotation( ) "pons cerebri") +AnnotationAssertion(Annotation( "NeuroNames:547") Annotation( ) "pons cerebri") AnnotationAssertion( "UBERON:0000988") AnnotationAssertion( ) AnnotationAssertion( ) @@ -138037,6 +137595,7 @@ SubClassOf(Annotation( "EHD AnnotationAssertion(Annotation( "Wikipedia:Reproductive_system") "Anatomical system that has as its parts the organs concerned with reproduction.") AnnotationAssertion( "consider splitting genitalia from reproductive system") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0010258") Annotation( "AAO") Annotation( "AAO:BJB") "Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000182") Annotation( "VHOG") Annotation( "PMID:21672850 Extavour CGM, Gray anatomy: phylogenetic patterns of somatic gonad structures and reproductive strategies across Bilateria. Integrative and Comparative Biology (2007)") Annotation( "http://bgee.unil.ch/") "Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG]") AnnotationAssertion( ) @@ -138050,12 +137609,13 @@ AnnotationAssertion( "EHDAA:5923") AnnotationAssertion( "EMAPA:17381") AnnotationAssertion( "EV:0100100") -AnnotationAssertion( "FBbt:00004857") +AnnotationAssertion(Annotation( ) "FBbt:00004857") AnnotationAssertion( "FMA:7160") AnnotationAssertion( "GAID:363") AnnotationAssertion( "HAO:0000374") AnnotationAssertion( "HAO:0000895") AnnotationAssertion( "MA:0000326") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005835") AnnotationAssertion( "MIAA:0000305") AnnotationAssertion( "NCIT:C12841") AnnotationAssertion( "SCTID:278875001") @@ -138075,10 +137635,11 @@ AnnotationAssertion( "BTO:0000081") "organa genitalia") AnnotationAssertion(Annotation( "BTO:0000081") "reproductive tissue") AnnotationAssertion( "reproductive tract") -AnnotationAssertion(Annotation( "Wikipedia:Reproductive_system") Annotation( ) "systemata genitalia") +AnnotationAssertion(Annotation( "Wikipedia:Reproductive_system") Annotation( ) "systemata genitalia") AnnotationAssertion( "UBERON:0000990") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -138117,7 +137678,7 @@ AnnotationAssertion( "BSA:0000079") AnnotationAssertion( "BTO:0000534") AnnotationAssertion( "EMAPA:17383") -AnnotationAssertion( "FBbt:00004858") +AnnotationAssertion(Annotation( ) "FBbt:00004858") AnnotationAssertion( "FMA:18250") AnnotationAssertion( "GAID:368") AnnotationAssertion( "HAO:0000379") @@ -138167,7 +137728,7 @@ AnnotationAssertion( "EHDAA:8124") AnnotationAssertion( "EMAPA:17962") AnnotationAssertion( "EV:0100111") -AnnotationAssertion( "FBbt:00004865") +AnnotationAssertion(Annotation( ) "FBbt:00004865") AnnotationAssertion( "FMA:7209") AnnotationAssertion( "GAID:367") AnnotationAssertion( "MA:0000384") @@ -138206,7 +137767,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "reproductive system of female organism gonada") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "ovaries") -AnnotationAssertion(Annotation( "Wikipedia:Ovary") Annotation( ) "ovarium") +AnnotationAssertion(Annotation( "Wikipedia:Ovary") Annotation( ) "ovarium") AnnotationAssertion( "UBERON:0000992") AnnotationAssertion( ) AnnotationAssertion( ) @@ -138420,7 +137981,7 @@ AnnotationAssertion(Annotation( "gonecyst") AnnotationAssertion( "vas efferens") AnnotationAssertion(Annotation( "BTO:0001234") Annotation( "Wikipedia:Seminal_vesicle") "vesicula seminalis") -AnnotationAssertion(Annotation( "Wikipedia:Seminal_vesicle") Annotation( ) "vesiculae seminales") +AnnotationAssertion(Annotation( "Wikipedia:Seminal_vesicle") Annotation( ) "vesiculae seminales") AnnotationAssertion(Annotation( "Wikipedia:Seminal_vesicle") "vesicular gland") AnnotationAssertion(Annotation( "Wikipedia:Seminal_vesicle") "vesicular glands") AnnotationAssertion(Annotation( "Wikipedia:Seminal_vesicle") "vesicular seminalis") @@ -138459,7 +138020,7 @@ AnnotationAssertion( "BTO:0001580") Annotation( ) "ductus ejaculatorii") AnnotationAssertion(Annotation( "BTO:0001580") "ductus ejaculatorius") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ejaculatory_duct") Annotation( ) "ductus ejaculatorii") +AnnotationAssertion(Annotation( "Wikipedia:Ejaculatory_duct") Annotation( ) "ductus ejaculatorii") AnnotationAssertion( "UBERON:0000999") AnnotationAssertion( ) AnnotationAssertion( ) @@ -138599,7 +138160,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000203") "Atmungssystem") AnnotationAssertion(Annotation( "BTO:0000203") "apparatus respiratorius") -AnnotationAssertion(Annotation( "Wikipedia:Respiratory_system") Annotation( ) "systema respiratorium") +AnnotationAssertion(Annotation( "Wikipedia:Respiratory_system") Annotation( ) "systema respiratorium") AnnotationAssertion( "UBERON:0001004") AnnotationAssertion( ) AnnotationAssertion( ) @@ -138664,7 +138225,7 @@ AnnotationAssertion( "CALOHA:TS-1293") AnnotationAssertion( "EFO:0000793") AnnotationAssertion( "EV:0100056") -AnnotationAssertion( "FBbt:00005055") +AnnotationAssertion(Annotation( ) "FBbt:00005055") AnnotationAssertion( "FMA:7152") AnnotationAssertion( "GAID:278") AnnotationAssertion( "MA:0002431") @@ -138729,7 +138290,7 @@ AnnotationAssertion( "EHDAA:5901") AnnotationAssertion( "EMAPA:17366") AnnotationAssertion( "EV:0100095") -AnnotationAssertion( "FBbt:00005056") +AnnotationAssertion(Annotation( ) "FBbt:00005056") AnnotationAssertion( "FMA:7159") AnnotationAssertion( "GAID:391") AnnotationAssertion( "MA:0000325") @@ -138779,10 +138340,11 @@ AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0001248") Annotation( "VHOG") Annotation( "ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.493") Annotation( "http://bgee.unil.ch/") "We should divest ourselves of the view that earlier vertebrate groups were 'on their way' to becoming mammals, as clearly they were not such visionaries. Neither were their systems 'imperfect' as earlier anatomists thought. Instead, their circulatory systems served them well to address the ecological demands arising from their lifestyles.[well established][VHOG]") AnnotationAssertion( "AAO:0000959") AnnotationAssertion( "CALOHA:TS-2103") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D002319") AnnotationAssertion( "VHOG:0001248") AnnotationAssertion( "Wikipedia:Circulatory_system") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Circulatory_system") Annotation( ) "systema cardiovasculare") +AnnotationAssertion(Annotation( "Wikipedia:Circulatory_system") Annotation( ) "systema cardiovasculare") AnnotationAssertion( "UBERON:0001009") AnnotationAssertion( ) AnnotationAssertion( ) @@ -138880,7 +138442,7 @@ AnnotationAssertion( "muscle group") AnnotationAssertion( "muscles set") AnnotationAssertion( "musculature") -AnnotationAssertion(Annotation( "FMA:32558") Annotation( "FMA:TA") Annotation( ) "musculi") +AnnotationAssertion(Annotation( "FMA:32558") Annotation( "FMA:TA") Annotation( ) "musculi") AnnotationAssertion(Annotation( "FMA:32558") "set of muscles") AnnotationAssertion(Annotation( "MA:0000165") "set of skeletal muscles") AnnotationAssertion( "uberon") @@ -138902,6 +138464,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "BIRNLEX:844") Annotation( "ISBN:0-14-051288-8") Annotation( "ISBN:3110148986") Annotation( "NLM:nervous+system") Annotation( "WB:rynl") Annotation( "Wikipedia:Nervous_system") Annotation( "ZFIN:curator") "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO].") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000396") Annotation( "TAO") Annotation( "ZFIN:curator") "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]") AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0000324") Annotation( "AAO") Annotation( "AAO:BJB") "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000402") Annotation( "VHOG") Annotation( "ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.117") Annotation( "http://bgee.unil.ch/") "Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG]") @@ -138917,7 +138480,7 @@ AnnotationAssertion( "EHDAA:826") AnnotationAssertion( "EMAPA:16469") AnnotationAssertion( "EV:0100162") -AnnotationAssertion( "FBbt:00005093") +AnnotationAssertion(Annotation( ) "FBbt:00005093") AnnotationAssertion( "FMA:7157") AnnotationAssertion( "GAID:466") AnnotationAssertion( "MA:0000016") @@ -138937,10 +138500,11 @@ AnnotationAssertion( "GO:0050877") "neurological system") AnnotationAssertion(Annotation( "Wikipedia:Nerve_net") "nerve net") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nervous_system") Annotation( ) "systema nervosum") +AnnotationAssertion(Annotation( "Wikipedia:Nervous_system") Annotation( ) "systema nervosum") AnnotationAssertion( "UBERON:0001016") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -138970,6 +138534,7 @@ DisjointClasses( "GO:0021551") Annotation( "http://www.frontiersinzoology.com/content/7/1/29") Annotation( "https://sourceforge.net/p/geneontology/ontology-requests/11422/") "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord.") AnnotationAssertion(Annotation( "Wikipedia:Acoelomorpha") ) +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0000090") Annotation( "AAO") Annotation( "AAO:BJB") "Part of the nervous system which includes the brain and spinal cord.[AAO]") AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0000012") Annotation( "TAO") Annotation( "ZFIN:curator") "The brain and spinal cord. Kimmel et al, 1995.[TAO]") AnnotationAssertion(Annotation( "BIRNLEX:1099") "The central nervous system (CNS) is the part of the nervous system which includes the brain, spinal cord, and nerve cell layer of the retina (CUMBO).") @@ -138986,7 +138551,7 @@ AnnotationAssertion( "EMAPA:16470") AnnotationAssertion( "EMAPA:16754") AnnotationAssertion( "EV:0100163") -AnnotationAssertion( "FBbt:00005094") +AnnotationAssertion(Annotation( ) "FBbt:00005094") AnnotationAssertion( "FMA:55675") AnnotationAssertion( "GAID:570") AnnotationAssertion( "MA:0000167") @@ -139002,13 +138567,14 @@ AnnotationAssertion( "ZFA:0000012") AnnotationAssertion( "neuronames:854") AnnotationAssertion(Annotation( ) "CNS") -AnnotationAssertion(Annotation( "FMA:55675") Annotation( "FMA:TA") Annotation( ) "systema nervosum centrale") +AnnotationAssertion(Annotation( "FMA:55675") Annotation( "FMA:TA") Annotation( ) "systema nervosum centrale") AnnotationAssertion(Annotation( "FMA:55675") "cerebrospinal axis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:55675") "neuraxis") AnnotationAssertion( "UBERON:0001017") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -139024,7 +138590,7 @@ AnnotationAssertion(Annotation( "http://neurolex.org/wiki/Cumbo_terms") "White matter structure of CNS that contains axons that arise predominantly in one central nervous system part and terminate in another. Tracts are generally named by their region or origin followed by their region of primary termination, e.g., mammillothalamic tract contains axons that arise from neurons in the mammillary bodies and terminate in the thalamus. (CUMBO)") AnnotationAssertion( "BIRNLEX:1649") AnnotationAssertion( "EV:0100304") -AnnotationAssertion( "FBbt:00005100") +AnnotationAssertion(Annotation( ) "FBbt:00005100") AnnotationAssertion( "FMA:83847") AnnotationAssertion( "NLX:147822") AnnotationAssertion( "axonal tract") @@ -139054,7 +138620,7 @@ AnnotationAssertion( "TGMA:0000088") AnnotationAssertion(Annotation( "ncithesaurus:Fascicle") "UMLS:C1185741") AnnotationAssertion( "Wikipedia:Nervous_system_fascicle") -AnnotationAssertion(Annotation( ) "fasciculus") +AnnotationAssertion(Annotation( ) "fasciculus") AnnotationAssertion(Annotation( "FMA:12235") "nerve bundle") AnnotationAssertion(Annotation( "FMA:12235") "nerve fasciculus") AnnotationAssertion(Annotation( "FMA:12235") "neural fasciculus") @@ -139087,7 +138653,7 @@ AnnotationAssertion( "EMAPA:32808") AnnotationAssertion( "EMAPA:32815") AnnotationAssertion( "EV:0100371") -AnnotationAssertion( "FBbt:00005105") +AnnotationAssertion(Annotation( ) "FBbt:00005105") AnnotationAssertion( "FMA:65132") AnnotationAssertion( "FMA:65239") AnnotationAssertion( "GAID:747") @@ -139128,10 +138694,10 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "UBERON:cjm") Annotation( "Wikipedia:Sensory_nerve") "A nerve that transmits from sensory receptors on the surface of the body to the central nervous system.") AnnotationAssertion( "AEO:0000201") AnnotationAssertion( "EHDAA2:0003200") -AnnotationAssertion( "FBbt:00005136") +AnnotationAssertion(Annotation( ) "FBbt:00005136") AnnotationAssertion( "FMA:5868") AnnotationAssertion( "Wikipedia:Sensory_nerve") -AnnotationAssertion(Annotation( "Wikipedia:Sensory_nerve") Annotation( ) "nervus sensorius") +AnnotationAssertion(Annotation( "Wikipedia:Sensory_nerve") Annotation( ) "nervus sensorius") AnnotationAssertion( "uberon") AnnotationAssertion( "afferent nerve") AnnotationAssertion( "UBERON:0001027") @@ -139152,7 +138718,7 @@ AnnotationAssertion( "EFO:0000805") AnnotationAssertion( "EHDAA2:0003094") AnnotationAssertion( "EMAPA:16192") -AnnotationAssertion( "FBbt:00007692") +AnnotationAssertion(Annotation( ) "FBbt:00007692") AnnotationAssertion( "FMA:75259") AnnotationAssertion( "MA:0002442") AnnotationAssertion( "MAT:0000031") @@ -139163,14 +138729,14 @@ AnnotationAssertion( "Wikipedia:Sensory_system") AnnotationAssertion( "XAO:0003194") AnnotationAssertion( "ZFA:0000282") -AnnotationAssertion(Annotation( "FMA:75259") Annotation( "FMA:TA") Annotation( ) "organa sensuum") +AnnotationAssertion(Annotation( "FMA:75259") Annotation( "FMA:TA") Annotation( ) "organa sensuum") AnnotationAssertion( "sense organ subsystem") AnnotationAssertion(Annotation( "FMA:75259") "sense organs") AnnotationAssertion(Annotation( "FMA:75259") "sense organs set") AnnotationAssertion( "sensory subsystem") AnnotationAssertion(Annotation( "TAO:0000282") Annotation( ) "sensory systems") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sensory_system") Annotation( ) "organa sensuum") +AnnotationAssertion(Annotation( "Wikipedia:Sensory_system") Annotation( ) "organa sensuum") AnnotationAssertion( "sensory organ system") AnnotationAssertion(Annotation( "FMA:75259") "set of sense organs") AnnotationAssertion( "UBERON:0001032") @@ -139276,7 +138842,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "FB:FBrf0056378") Annotation( "Wikipedia:Chordotonal_organ") "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament.") AnnotationAssertion( "EFO:0000940") -AnnotationAssertion( "FBbt:00005215") +AnnotationAssertion(Annotation( ) "FBbt:00005215") AnnotationAssertion( "MAT:0000209") AnnotationAssertion( "MIAA:0000209") AnnotationAssertion( "Wikipedia:Chordotonal_organ") @@ -139315,8 +138881,8 @@ AnnotationAssertion(Annotation( "VHOG:0000830") AnnotationAssertion( "Wikipedia:Yolk_sac") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Yolk_sac") Annotation( ) "saccus vitellinus") -AnnotationAssertion(Annotation( "Wikipedia:Yolk_sac") Annotation( ) "vesicula umbilicalis") +AnnotationAssertion(Annotation( "Wikipedia:Yolk_sac") Annotation( ) "saccus vitellinus") +AnnotationAssertion(Annotation( "Wikipedia:Yolk_sac") Annotation( ) "vesicula umbilicalis") AnnotationAssertion( "UBERON:0001040") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139340,7 +138906,7 @@ AnnotationAssertion( "EHDAA2:0000557") AnnotationAssertion( "EHDAA:520") AnnotationAssertion( "EMAPA:16548") -AnnotationAssertion( "FBbt:00005379") +AnnotationAssertion(Annotation( ) "FBbt:00005379") AnnotationAssertion( "FMA:45616") AnnotationAssertion( "MA:0001526") AnnotationAssertion( "NCIT:C34180") @@ -139351,8 +138917,8 @@ AnnotationAssertion( "Wikipedia:Foregut") AnnotationAssertion( "XAO:0000232") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Foregut") Annotation( ) "praeenteron") -AnnotationAssertion(Annotation( "Wikipedia:Foregut") Annotation( ) "proenteron") +AnnotationAssertion(Annotation( "Wikipedia:Foregut") Annotation( ) "praeenteron") +AnnotationAssertion(Annotation( "Wikipedia:Foregut") Annotation( ) "proenteron") AnnotationAssertion( "UBERON:0001041") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139474,7 +139040,7 @@ AnnotationAssertion( "EHDAA:7987") AnnotationAssertion( "EMAPA:17751") AnnotationAssertion( "EV:0100059") -AnnotationAssertion( "FBbt:00005382") +AnnotationAssertion(Annotation( ) "FBbt:00005382") AnnotationAssertion( "FMA:9597") AnnotationAssertion( "GAID:937") AnnotationAssertion( "MA:0000346") @@ -139489,7 +139055,7 @@ AnnotationAssertion( "galen:SalivaryGland") AnnotationAssertion(Annotation( "MA:0000346") "salivary gland") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Salivary_gland") Annotation( ) "glandulae salivariae") +AnnotationAssertion(Annotation( "Wikipedia:Salivary_gland") Annotation( ) "glandulae salivariae") AnnotationAssertion( "UBERON:0001044") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139519,7 +139085,7 @@ AnnotationAssertion( "EHDAA2:0001185") AnnotationAssertion( "EHDAA:983") AnnotationAssertion( "EMAPA:16255") -AnnotationAssertion( "FBbt:00005383") +AnnotationAssertion(Annotation( ) "FBbt:00005383") AnnotationAssertion( "FMA:45617") AnnotationAssertion( "MA:0001564") AnnotationAssertion( "NCIT:C34210") @@ -139530,7 +139096,7 @@ AnnotationAssertion( "Wikipedia:Midgut") AnnotationAssertion( "XAO:0000103") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Midgut") Annotation( ) "mesenteron") +AnnotationAssertion(Annotation( "Wikipedia:Midgut") Annotation( ) "mesenteron") AnnotationAssertion( "UBERON:0001045") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139554,7 +139120,7 @@ AnnotationAssertion( "EHDAA2:0000779") AnnotationAssertion( "EHDAA:975") AnnotationAssertion( "EMAPA:16715") -AnnotationAssertion( "FBbt:00005384") +AnnotationAssertion(Annotation( ) "FBbt:00005384") AnnotationAssertion( "FMA:45618") AnnotationAssertion( "MA:0001527") AnnotationAssertion( "NCIT:C34188") @@ -139565,7 +139131,7 @@ AnnotationAssertion( "Wikipedia:Hindgut") AnnotationAssertion( "XAO:0000104") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Hindgut") Annotation( ) "metenteron") +AnnotationAssertion(Annotation( "Wikipedia:Hindgut") Annotation( ) "metenteron") AnnotationAssertion( "UBERON:0001046") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139583,7 +139149,7 @@ AnnotationAssertion( "BTO:0001886") AnnotationAssertion( "EFO:0001652") AnnotationAssertion( "EHDAA2:0003171") -AnnotationAssertion( "FBbt:00005495") +AnnotationAssertion(Annotation( ) "FBbt:00005495") AnnotationAssertion( "FMA:86589") AnnotationAssertion( "MAT:0000482") AnnotationAssertion( "NCIT:C34275") @@ -139622,7 +139188,7 @@ AnnotationAssertion( "EMAPA:16757") AnnotationAssertion( "FMA:293882") AnnotationAssertion( "MAT:0000069") -AnnotationAssertion( "MESH:D054259") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D054259") AnnotationAssertion( "MIAA:0000069") AnnotationAssertion( "NCIT:C34226") AnnotationAssertion( "SCTID:362852000") @@ -139636,7 +139202,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "neural primordium") AnnotationAssertion( "presumptive central nervous system") -AnnotationAssertion(Annotation( "Wikipedia:Neural_tube") Annotation( ) "tubus neuralis") +AnnotationAssertion(Annotation( "Wikipedia:Neural_tube") Annotation( ) "tubus neuralis") AnnotationAssertion( "UBERON:0001049") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139703,7 +139269,7 @@ AnnotationAssertion(Annotation( "It is unclear as to whether the Malpighian tubules of arachnids and those of the Uniramia are homologous or the result of convergent evolution.[Wikipedia:Malpighian_tubule_system]") AnnotationAssertion( "BTO:0000810") AnnotationAssertion( "EFO:0000243") -AnnotationAssertion( "FBbt:00005786") +AnnotationAssertion(Annotation( ) "FBbt:00005786") AnnotationAssertion( "GAID:1228") AnnotationAssertion( "MAT:0000123") AnnotationAssertion( "MESH:D008317") @@ -139733,7 +139299,7 @@ AnnotationAssertion( "PMID:20813265") "Also in annelids. 'Comparison to the vertebrate pallium reveals that the annelid mushroom bodies develop from similar molecular coordinates within a conserved overall molecular brain topology and that their development involves conserved patterning mechanisms and produces conserved neuron types that existed already in the proto- stome-deuterostome ancestors. These data indicate deep homology of pallium and mushroom bodies and date back the origin of higher brain centers to prebilaterian times'") AnnotationAssertion( "BTO:0002675") AnnotationAssertion( "EFO:0000925") -AnnotationAssertion( "FBbt:00005801") +AnnotationAssertion(Annotation( ) "FBbt:00005801") AnnotationAssertion( "GAID:1231") AnnotationAssertion( "MAT:0000336") AnnotationAssertion( "MESH:D024521") @@ -139765,7 +139331,7 @@ AnnotationAssertion( "BIRNLEX:6") AnnotationAssertion( "CARO:0000000") AnnotationAssertion( "EHDAA2:0002229") -AnnotationAssertion( "FBbt:10000000") +AnnotationAssertion(Annotation( ) "FBbt:10000000") AnnotationAssertion( "FMA:62955") AnnotationAssertion( "HAO:0000000") AnnotationAssertion( "MA:0000001") @@ -139839,7 +139405,7 @@ AnnotationAssertion( "SCTID:244570000") AnnotationAssertion(Annotation( "ncithesaurus:Intervertebral_Disc") "UMLS:C0021815") AnnotationAssertion( "Wikipedia:Intervertebral_disk") -AnnotationAssertion(Annotation( "FMA:10446") Annotation( "FMA:TA") Annotation( ) "discus intervertebralis") +AnnotationAssertion(Annotation( "FMA:10446") Annotation( "FMA:TA") Annotation( ) "discus intervertebralis") AnnotationAssertion( "intervertebral disc") AnnotationAssertion(Annotation( "Wikipedia:Spinal_disc") "spinal disc") AnnotationAssertion( "uberon") @@ -139898,7 +139464,7 @@ AnnotationAssertion( "XAO:0000345") AnnotationAssertion(Annotation( "AAO:0010218") "external carotid") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:External_carotid_artery") Annotation( ) "arteria carotis externa") +AnnotationAssertion(Annotation( "Wikipedia:External_carotid_artery") Annotation( ) "arteria carotis externa") AnnotationAssertion( "UBERON:0001070") AnnotationAssertion( ) AnnotationAssertion( ) @@ -139962,7 +139528,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "VHOG:0001194") "caudal vena cava") AnnotationAssertion( "postcava") -AnnotationAssertion(Annotation( "BTO:0002682") Annotation( "Wikipedia:Inferior_vena_cava") Annotation( ) "vena cava inferior") +AnnotationAssertion(Annotation( "BTO:0002682") Annotation( "Wikipedia:Inferior_vena_cava") Annotation( ) "vena cava inferior") AnnotationAssertion( "UBERON:0001072") AnnotationAssertion( ) AnnotationAssertion( ) @@ -140011,7 +139577,7 @@ AnnotationAssertion( "cavity of pericardial sac") AnnotationAssertion(Annotation( "Wikipedia:Pericardial_cavity") "pericardial space") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pericardial_cavity") Annotation( ) "cavitas pericardiaca") +AnnotationAssertion(Annotation( "Wikipedia:Pericardial_cavity") Annotation( ) "cavitas pericardiaca") AnnotationAssertion( "UBERON:0001074") AnnotationAssertion( ) AnnotationAssertion( ) @@ -140044,7 +139610,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Body_of_vertebra") AnnotationAssertion( "ZFA:0000126") AnnotationAssertion(Annotation( "FMA:11945") "body of vertebra") -AnnotationAssertion(Annotation( ) "corpus vertebra") +AnnotationAssertion(Annotation( ) "corpus vertebra") AnnotationAssertion(Annotation( "FMA:11945") "corpus vertebrae (vertebrale)") AnnotationAssertion(Annotation( "FMA:11945") "vertebral body") AnnotationAssertion(Annotation( "PMID:11746457") Annotation( ) "arcocentrum") @@ -140222,7 +139788,6 @@ SubClassOf( (skin of trunk) AnnotationAssertion(Annotation( "OBOL:automatic") "A zone of skin that is part of a trunk [Automatically generated definition].") -AnnotationAssertion( ) AnnotationAssertion(Annotation( "MA:th") "EMAPA:37278") AnnotationAssertion( "FMA:12167") AnnotationAssertion( "FMA:23093") @@ -140237,7 +139802,6 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "zone of skin of trunk") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001085") -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region") AnnotationAssertion(rdfs:label "skin of trunk") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -140411,7 +139975,7 @@ AnnotationAssertion( "C1 vertebra") AnnotationAssertion( "atlas") AnnotationAssertion( "atlas (CI)") -AnnotationAssertion(Annotation( "FMA:12519") Annotation( "FMA:TA") Annotation( ) "atlas [C I]") +AnnotationAssertion(Annotation( "FMA:12519") Annotation( "FMA:TA") Annotation( ) "atlas [C I]") AnnotationAssertion( "atlas vertebra") AnnotationAssertion(Annotation( "MP:0011576") "cervical atlas") AnnotationAssertion(Annotation( "MA:0001421") Annotation( ) "cervical vertebra 1") @@ -140447,7 +140011,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Axis_(anatomy)") AnnotationAssertion( "ZFA:0001168") AnnotationAssertion( "axis (CII)") -AnnotationAssertion(Annotation( "FMA:12520") Annotation( "FMA:TA") Annotation( ) "axis [C II]") +AnnotationAssertion(Annotation( "FMA:12520") Annotation( "FMA:TA") Annotation( ) "axis [C II]") AnnotationAssertion( "axis vertebra") AnnotationAssertion(Annotation( "MP:0004608") "cervical axis") AnnotationAssertion(Annotation( "ZFA:0001168") "vertebra 2") @@ -140547,7 +140111,7 @@ AnnotationAssertion( ) "supracoracoideus") AnnotationAssertion(Annotation( ) "supracoracoideus muscle") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pectoralis_minor_muscle") Annotation( ) "musculus pectoralis minor") +AnnotationAssertion(Annotation( "Wikipedia:Pectoralis_minor_muscle") Annotation( ) "musculus pectoralis minor") AnnotationAssertion( "UBERON:0001100") AnnotationAssertion( ) AnnotationAssertion( ) @@ -140670,7 +140234,7 @@ AnnotationAssertion(Annotation( "latissimus dorsi") AnnotationAssertion( "musculus latissimus dorsi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Latissimus_dorsi_muscle") Annotation( ) "musculus latissimus dorsi") +AnnotationAssertion(Annotation( "Wikipedia:Latissimus_dorsi_muscle") Annotation( ) "musculus latissimus dorsi") AnnotationAssertion( "UBERON:0001112") AnnotationAssertion( ) AnnotationAssertion( ) @@ -140725,12 +140289,12 @@ AnnotationAssertion( "Wikipedia:Right_lobe_of_liver") AnnotationAssertion( "ZFA:0005173") AnnotationAssertion( "liver right lobe") -AnnotationAssertion(Annotation( ) "lobus hepaticus dexter") +AnnotationAssertion(Annotation( ) "lobus hepaticus dexter") AnnotationAssertion(Annotation( "ZFA:0005173") "right liver lobe") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "TAO:0005173") "2nd lobe") AnnotationAssertion(Annotation( "ZFA:0005173") Annotation( ) "gall bladder lobe") -AnnotationAssertion(Annotation( "Wikipedia:Right_lobe_of_liver") Annotation( ) "lobus hepatis dexter") +AnnotationAssertion(Annotation( "Wikipedia:Right_lobe_of_liver") Annotation( ) "lobus hepatis dexter") AnnotationAssertion(Annotation( "EMAPA:18311") "right hepatic lobe") AnnotationAssertion(Annotation( "TAO:0005173") "second lobe") AnnotationAssertion( "UBERON:0001114") @@ -140760,10 +140324,10 @@ AnnotationAssertion( "ZFA:0005172") AnnotationAssertion( "left liver lobe") AnnotationAssertion( "liver left lobe") -AnnotationAssertion(Annotation( ) "lobus hepaticus sinister") +AnnotationAssertion(Annotation( ) "lobus hepaticus sinister") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:18307") "left hepatic lobe") -AnnotationAssertion(Annotation( "Wikipedia:Left_lobe_of_liver") Annotation( ) "lobus hepatis sinister") +AnnotationAssertion(Annotation( "Wikipedia:Left_lobe_of_liver") Annotation( ) "lobus hepatis sinister") AnnotationAssertion( "UBERON:0001115") AnnotationAssertion( ) AnnotationAssertion( ) @@ -140787,11 +140351,11 @@ AnnotationAssertion(Annotation( "VHOG:0000732") AnnotationAssertion( "Wikipedia:Lobes_of_thyroid_gland") AnnotationAssertion( "lobus (glandula thyroidea)") -AnnotationAssertion(Annotation( "FMA:13367") Annotation( "FMA:TA") Annotation( ) "lobus glandulae thyroideae") +AnnotationAssertion(Annotation( "FMA:13367") Annotation( "FMA:TA") Annotation( ) "lobus glandulae thyroideae") AnnotationAssertion( "thyroid gland lobe") AnnotationAssertion( "thyroid lobe") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lobes_of_thyroid_gland") Annotation( ) "lobuli glandulae thyroideae") +AnnotationAssertion(Annotation( "Wikipedia:Lobes_of_thyroid_gland") Annotation( ) "lobuli glandulae thyroideae") AnnotationAssertion( "UBERON:0001118") AnnotationAssertion(rdfs:comment "The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids") AnnotationAssertion(rdfs:label "lobe of thyroid gland") @@ -140860,8 +140424,8 @@ AnnotationAssertion(Annotation( "serratus anterior muscle") AnnotationAssertion( "serratus ventralis muscle") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Serratus_anterior_muscle") Annotation( ) "musculus serratus anterior") -AnnotationAssertion(Annotation( "Wikipedia:Serratus_anterior_muscle") Annotation( ) "serratus lateralis") +AnnotationAssertion(Annotation( "Wikipedia:Serratus_anterior_muscle") Annotation( ) "musculus serratus anterior") +AnnotationAssertion(Annotation( "Wikipedia:Serratus_anterior_muscle") Annotation( ) "serratus lateralis") AnnotationAssertion( "UBERON:0001125") AnnotationAssertion( ) AnnotationAssertion( ) @@ -140939,7 +140503,7 @@ AnnotationAssertion( "Wikipedia:Vertebral_foramen") AnnotationAssertion( "vertebra neural canal") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Vertebral_foramen") Annotation( ) "foramen vertebrale") +AnnotationAssertion(Annotation( "Wikipedia:Vertebral_foramen") Annotation( ) "foramen vertebrale") AnnotationAssertion( "UBERON:0001131") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vertebral foramen") @@ -141105,11 +140669,11 @@ AnnotationAssertion( "involuntary muscle") AnnotationAssertion( "non-striated muscle") AnnotationAssertion( "smooth muscle") -AnnotationAssertion(Annotation( "FMA:14070") Annotation( "FMA:TA") Annotation( ) "textus muscularis nonstriatus") +AnnotationAssertion(Annotation( "FMA:14070") Annotation( "FMA:TA") Annotation( ) "textus muscularis nonstriatus") AnnotationAssertion(Annotation( ) "visceral muscle") AnnotationAssertion(Annotation( ) "visceral muscle tissue") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Smooth_muscle_tissue") Annotation( ) "textus muscularis levis; textus muscularis nonstriatus") +AnnotationAssertion(Annotation( "Wikipedia:Smooth_muscle_tissue") Annotation( ) "textus muscularis levis; textus muscularis nonstriatus") AnnotationAssertion( "UBERON:0001135") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141195,7 +140759,7 @@ AnnotationAssertion( "Wikipedia:Superior_mesenteric_vein") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002783") "upper mesenteric vein") -AnnotationAssertion(Annotation( "Wikipedia:Superior_mesenteric_vein") Annotation( ) "vena mesenterica superior") +AnnotationAssertion(Annotation( "Wikipedia:Superior_mesenteric_vein") Annotation( ) "vena mesenterica superior") AnnotationAssertion( "UBERON:0001138") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141221,7 +140785,7 @@ AnnotationAssertion( "galen:CommonIliacVein") AnnotationAssertion( "common iliac venous tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Common_iliac_vein") Annotation( ) "vena iliaca communis") +AnnotationAssertion(Annotation( "Wikipedia:Common_iliac_vein") Annotation( ) "vena iliaca communis") AnnotationAssertion( "UBERON:0001139") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141256,7 +140820,7 @@ AnnotationAssertion(Annotation( "renal venous tree") AnnotationAssertion(Annotation( "OBOL:automatic") "vein of kidney") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Renal_vein") Annotation( ) "venae renales") +AnnotationAssertion(Annotation( "Wikipedia:Renal_vein") Annotation( ) "venae renales") AnnotationAssertion( "UBERON:0001140") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141330,10 +140894,10 @@ AnnotationAssertion( "galen:HepaticVein") AnnotationAssertion(Annotation( "OBOL:automatic") "liver vein") AnnotationAssertion(Annotation( "OBOL:automatic") "vein of liver") -AnnotationAssertion(Annotation( ) "vena hepatica") +AnnotationAssertion(Annotation( ) "vena hepatica") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "hepatic veins") -AnnotationAssertion(Annotation( "Wikipedia:Hepatic_vein") Annotation( ) "venae hepaticae") +AnnotationAssertion(Annotation( "Wikipedia:Hepatic_vein") Annotation( ) "venae hepaticae") AnnotationAssertion( "UBERON:0001143") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141367,9 +140931,9 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "vein of testicle") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002678") "vena tesicularis") -AnnotationAssertion(Annotation( "Wikipedia:Testicular_vein") Annotation( ) "vena testicularis dextra") -AnnotationAssertion(Annotation( "Wikipedia:Testicular_vein") Annotation( ) "vena testicularis sinistra") -AnnotationAssertion(Annotation( "Wikipedia:Testicular_vein") Annotation( ) "venae spermaticae") +AnnotationAssertion(Annotation( "Wikipedia:Testicular_vein") Annotation( ) "vena testicularis dextra") +AnnotationAssertion(Annotation( "Wikipedia:Testicular_vein") Annotation( ) "vena testicularis sinistra") +AnnotationAssertion(Annotation( "Wikipedia:Testicular_vein") Annotation( ) "venae spermaticae") AnnotationAssertion( "UBERON:0001144") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "testicular vein") @@ -141402,8 +140966,8 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "vein of gonada of female reproductive system") AnnotationAssertion(Annotation( "OBOL:automatic") "vein of ovary") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ovarian_vein") Annotation( ) "vena ovarica dextra") -AnnotationAssertion(Annotation( "Wikipedia:Ovarian_vein") Annotation( ) "vena ovarica sinistra") +AnnotationAssertion(Annotation( "Wikipedia:Ovarian_vein") Annotation( ) "vena ovarica dextra") +AnnotationAssertion(Annotation( "Wikipedia:Ovarian_vein") Annotation( ) "vena ovarica sinistra") AnnotationAssertion( "UBERON:0001145") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ovarian vein") @@ -141452,7 +141016,7 @@ AnnotationAssertion( "ZFA:0005166") AnnotationAssertion( "galen:CysticDuct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cystic_duct") Annotation( ) "ductus cysticus") +AnnotationAssertion(Annotation( "Wikipedia:Cystic_duct") Annotation( ) "ductus cysticus") AnnotationAssertion( "UBERON:0001152") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141550,13 +141114,13 @@ AnnotationAssertion( "Wikipedia:Vermiform_appendix") AnnotationAssertion( "galen:AppendixVermiformis") AnnotationAssertion( "appendix") -AnnotationAssertion(Annotation( "FMA:14542") Annotation( "FMA:TA") Annotation( ) "appendix vermiformis") +AnnotationAssertion(Annotation( "FMA:14542") Annotation( "FMA:TA") Annotation( ) "appendix vermiformis") AnnotationAssertion( "caecal appendix") AnnotationAssertion( "cecal appendix") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35140") "apex of caecum") AnnotationAssertion(Annotation( "VHOG:0001306") "apex of cecum") -AnnotationAssertion(Annotation( "Wikipedia:Vermiform_appendix") Annotation( ) "appendix vermiformis") +AnnotationAssertion(Annotation( "Wikipedia:Vermiform_appendix") Annotation( ) "appendix vermiformis") AnnotationAssertion( "UBERON:0001154") AnnotationAssertion( ) AnnotationAssertion( ) @@ -141631,14 +141195,14 @@ AnnotationAssertion( "FMA:14545") AnnotationAssertion( "MA:0001541") AnnotationAssertion( "MAT:0000311") -AnnotationAssertion( "MESH:D044682") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D044682") AnnotationAssertion( "MIAA:0000311") AnnotationAssertion( "NCIT:C12265") AnnotationAssertion( "SCTID:362162009") AnnotationAssertion(Annotation( "ncithesaurus:Ascending_Colon") "UMLS:C0227375") AnnotationAssertion( "Wikipedia:Ascending_colon") AnnotationAssertion( "galen:AscendingColon") -AnnotationAssertion(Annotation( "Wikipedia:Ascending_colon") Annotation( ) "colon ascendens") +AnnotationAssertion(Annotation( "Wikipedia:Ascending_colon") Annotation( ) "colon ascendens") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Spiral_colon") Annotation( ) "spiral colon") AnnotationAssertion( "UBERON:0001156") @@ -141664,14 +141228,14 @@ AnnotationAssertion( "FMA:14546") AnnotationAssertion( "MA:0001543") AnnotationAssertion( "MAT:0000312") -AnnotationAssertion( "MESH:D044684") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D044684") AnnotationAssertion( "MIAA:0000312") AnnotationAssertion( "NCIT:C12385") AnnotationAssertion( "SCTID:362163004") AnnotationAssertion(Annotation( "ncithesaurus:Transverse_Colon") "UMLS:C0227386") AnnotationAssertion( "Wikipedia:Transverse_colon") AnnotationAssertion( "galen:TransverseColon") -AnnotationAssertion(Annotation( "Wikipedia:Transverse_colon") Annotation( ) "colon transversum") +AnnotationAssertion(Annotation( "Wikipedia:Transverse_colon") Annotation( ) "colon transversum") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001157") AnnotationAssertion( ) @@ -141696,14 +141260,14 @@ AnnotationAssertion( "FMA:14547") AnnotationAssertion( "MA:0001542") AnnotationAssertion( "MAT:0000313") -AnnotationAssertion( "MESH:D044683") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D044683") AnnotationAssertion( "MIAA:0000313") AnnotationAssertion( "NCIT:C12268") AnnotationAssertion( "SCTID:362165006") AnnotationAssertion(Annotation( "ncithesaurus:Descending_Colon") "UMLS:C0227389") AnnotationAssertion( "Wikipedia:Descending_colon") AnnotationAssertion( "galen:DescendingColon") -AnnotationAssertion(Annotation( "Wikipedia:Descending_colon") Annotation( ) "colon descendens") +AnnotationAssertion(Annotation( "Wikipedia:Descending_colon") Annotation( ) "colon descendens") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001158") AnnotationAssertion( ) @@ -141737,7 +141301,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Sigmoid_colon") AnnotationAssertion( "galen:SigmoidColon") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sigmoid_colon") Annotation( ) "colon sigmoideum") +AnnotationAssertion(Annotation( "Wikipedia:Sigmoid_colon") Annotation( ) "colon sigmoideum") AnnotationAssertion( "pelvic colon") AnnotationAssertion( "sigmoid colon") AnnotationAssertion( "sigmoid flexure") @@ -141808,7 +141372,7 @@ AnnotationAssertion( "gastric body") AnnotationAssertion( "stomach body") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0000505") Annotation( "Wikipedia:Body_of_stomach") Annotation( ) "corpus gastricum") +AnnotationAssertion(Annotation( "BTO:0000505") Annotation( "Wikipedia:Body_of_stomach") Annotation( ) "corpus gastricum") AnnotationAssertion(Annotation( "BTO:0000505") "corpus ventriculare") AnnotationAssertion(Annotation( "BTO:0000505") "corpus ventriculi") AnnotationAssertion( "gastric corpus") @@ -141837,10 +141401,10 @@ AnnotationAssertion( "cardial part of stomach") AnnotationAssertion( "gastric cardia") AnnotationAssertion( "pars cardiaca (gaster)") -AnnotationAssertion(Annotation( "FMA:14561") Annotation( "FMA:TA") Annotation( ) "pars cardiaca gastricae") +AnnotationAssertion(Annotation( "FMA:14561") Annotation( "FMA:TA") Annotation( ) "pars cardiaca gastricae") AnnotationAssertion(Annotation( "MA:0001609") "stomach cardiac region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cardia") Annotation( ) "antrum cardiacum") +AnnotationAssertion(Annotation( "Wikipedia:Cardia") Annotation( ) "antrum cardiacum") AnnotationAssertion( "cardiac antrum") AnnotationAssertion(Annotation( "Wikipedia:Cardia") "cardiac orifice") AnnotationAssertion(Annotation( "Wikipedia:Cardia") "cardiac region") @@ -141876,7 +141440,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001732") "antrum of Willis") AnnotationAssertion(Annotation( "BTO:0001732") "antrum pylori") -AnnotationAssertion(Annotation( "BTO:0001732") Annotation( "Wikipedia:Pyloric_antrum") Annotation( ) "antrum pyloricum") +AnnotationAssertion(Annotation( "BTO:0001732") Annotation( "Wikipedia:Pyloric_antrum") Annotation( ) "antrum pyloricum") AnnotationAssertion(Annotation( "BTO:0001732") "gastric antrum") AnnotationAssertion( "stomach antrum") AnnotationAssertion( "UBERON:0001165") @@ -141913,13 +141477,13 @@ AnnotationAssertion(Annotation( "VHOG:0000420") AnnotationAssertion( "Wikipedia:Pylorus") AnnotationAssertion( "galen:Pylorus") -AnnotationAssertion(Annotation( ) "pars pylorica") -AnnotationAssertion(Annotation( "FMA:14581") Annotation( "FMA:TA") Annotation( ) "pars pylorica gastricae") +AnnotationAssertion(Annotation( ) "pars pylorica") +AnnotationAssertion(Annotation( "FMA:14581") Annotation( "FMA:TA") Annotation( ) "pars pylorica gastricae") AnnotationAssertion( "pyloric part of stomach") AnnotationAssertion( "pyloric region") AnnotationAssertion(Annotation( "EHDAA2:0001580") "stomach pyloric region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pylorus") Annotation( ) "valvula pylori") +AnnotationAssertion(Annotation( "Wikipedia:Pylorus") Annotation( ) "valvula pylori") AnnotationAssertion( "UBERON:0001166") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142049,6 +141613,7 @@ AnnotationAssertion(Annotation( "AAO:0011020") AnnotationAssertion( "EMAPA:35172") AnnotationAssertion( "FMA:14665") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001659") AnnotationAssertion( "SCTID:181267003") AnnotationAssertion(Annotation( "ncithesaurus:Biliary_Tract") "UMLS:C0005423") AnnotationAssertion( "Wikipedia:Biliary_tract") @@ -142091,7 +141656,7 @@ AnnotationAssertion( "galen:CommonBileDuct") AnnotationAssertion( "ductus choledochus (biliaris)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Common_bile_duct") Annotation( ) "ductus choledochus") +AnnotationAssertion(Annotation( "Wikipedia:Common_bile_duct") Annotation( ) "ductus choledochus") AnnotationAssertion( "UBERON:0001174") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142122,7 +141687,7 @@ AnnotationAssertion(Annotation( "VHOG:0000220") AnnotationAssertion( "Wikipedia:Common_hepatic_duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Common_hepatic_duct") Annotation( ) "ductus hepaticus communis") +AnnotationAssertion(Annotation( "Wikipedia:Common_hepatic_duct") Annotation( ) "ductus hepaticus communis") AnnotationAssertion( "hepatic duct") AnnotationAssertion( "UBERON:0001175") AnnotationAssertion( ) @@ -142151,7 +141716,7 @@ AnnotationAssertion( "ncithesaurus:Right_Hepatic_Duct") "UMLS:C0227557") AnnotationAssertion( "VHOG:0000217") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( ) "ductus hepaticus dexter") +AnnotationAssertion(Annotation( ) "ductus hepaticus dexter") AnnotationAssertion( "UBERON:0001176") AnnotationAssertion(rdfs:label "right hepatic duct") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -142171,7 +141736,7 @@ AnnotationAssertion( "ncithesaurus:Left_Hepatic_Duct") "UMLS:C0227560") AnnotationAssertion( "VHOG:0000218") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( ) "ductus hepaticus sinister") +AnnotationAssertion(Annotation( ) "ductus hepaticus sinister") AnnotationAssertion( "UBERON:0001177") AnnotationAssertion(rdfs:label "left hepatic duct") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -142214,8 +141779,8 @@ AnnotationAssertion(Annotation( "VHOG:0000852") AnnotationAssertion( "Wikipedia:Peritoneal_cavity") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0001782") Annotation( "Wikipedia:Peritoneal_cavity") Annotation( ) "cavitas peritonealis") -AnnotationAssertion(Annotation( "Wikipedia:Peritoneal_cavity") Annotation( ) "saccus serosus peritonei") +AnnotationAssertion(Annotation( "BTO:0001782") Annotation( "Wikipedia:Peritoneal_cavity") Annotation( ) "cavitas peritonealis") +AnnotationAssertion(Annotation( "Wikipedia:Peritoneal_cavity") Annotation( ) "saccus serosus peritonei") AnnotationAssertion( "UBERON:0001179") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142246,7 +141811,7 @@ AnnotationAssertion( "galen:SuperiorMesentericArtery") AnnotationAssertion( "superior mesenteric arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0002303") Annotation( "Wikipedia:Superior_mesenteric_artery") Annotation( ) "arteria mesenterica superior") +AnnotationAssertion(Annotation( "BTO:0002303") Annotation( "Wikipedia:Superior_mesenteric_artery") Annotation( ) "arteria mesenterica superior") AnnotationAssertion( "UBERON:0001182") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142279,7 +141844,7 @@ AnnotationAssertion( "galen:InferiorMesentericArtery") AnnotationAssertion( "inferior mesenteric arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0002302") Annotation( "Wikipedia:Inferior_mesenteric_artery") Annotation( ) "arteria mesenterica inferior") +AnnotationAssertion(Annotation( "BTO:0002302") Annotation( "Wikipedia:Inferior_mesenteric_artery") Annotation( ) "arteria mesenterica inferior") AnnotationAssertion( "UBERON:0001183") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142318,7 +141883,7 @@ AnnotationAssertion( "galen:RenalArtery") AnnotationAssertion( "renal arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Renal_artery") Annotation( ) "arteria renalis") +AnnotationAssertion(Annotation( "Wikipedia:Renal_artery") Annotation( ) "arteria renalis") AnnotationAssertion(Annotation( ) "renal arteries") AnnotationAssertion( "UBERON:0001184") AnnotationAssertion( ) @@ -142389,7 +141954,7 @@ AnnotationAssertion( "Wikipedia:Testicular_artery") AnnotationAssertion( "testicular arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Testicular_artery") Annotation( ) "arteria testicularis") +AnnotationAssertion(Annotation( "Wikipedia:Testicular_artery") Annotation( ) "arteria testicularis") AnnotationAssertion(Annotation( "Wikipedia:Testicular_artery") "internal spermatic") AnnotationAssertion(Annotation( "Wikipedia:Testicular_artery") "internal spermatic arteries") AnnotationAssertion(Annotation( "Wikipedia:Testicular_artery") "internal spermatic artery") @@ -142456,7 +142021,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Ovarian_artery") AnnotationAssertion( "ovarian arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ovarian_artery") Annotation( ) "arteria ovarica") +AnnotationAssertion(Annotation( "Wikipedia:Ovarian_artery") Annotation( ) "arteria ovarica") AnnotationAssertion( "UBERON:0001190") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142480,7 +142045,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Common_iliac_artery") AnnotationAssertion( "common iliac arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Common_iliac_artery") Annotation( ) "arteria iliaca communis") +AnnotationAssertion(Annotation( "Wikipedia:Common_iliac_artery") Annotation( ) "arteria iliaca communis") AnnotationAssertion( "UBERON:0001191") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142508,7 +142073,7 @@ AnnotationAssertion( "ncithesaurus:Hepatic_Artery") "UMLS:C0019145") AnnotationAssertion( "ZFA:0005161") AnnotationAssertion( "galen:HepaticArtery") -AnnotationAssertion(Annotation( ) "arteria hepatica propria") +AnnotationAssertion(Annotation( ) "arteria hepatica propria") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0004307") "arteria hepatica") AnnotationAssertion( "UBERON:0001193") @@ -142534,10 +142099,10 @@ AnnotationAssertion( "ncithesaurus:Splenic_Artery") "UMLS:C0037996") AnnotationAssertion( "Wikipedia:Splenic_artery") AnnotationAssertion( "galen:SplenicArtery") -AnnotationAssertion(Annotation( "Wikipedia:Splenic_artery") Annotation( ) "arteria splenica") +AnnotationAssertion(Annotation( "Wikipedia:Splenic_artery") Annotation( ) "arteria splenica") AnnotationAssertion(Annotation( "MA:0001991") "lienal artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Splenic_artery") Annotation( ) "arteria lienalis") +AnnotationAssertion(Annotation( "Wikipedia:Splenic_artery") Annotation( ) "arteria lienalis") AnnotationAssertion( "UBERON:0001194") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142563,7 +142128,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Middle_colic_artery") AnnotationAssertion( "galen:MiddleColicArtery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Middle_colic_artery") Annotation( ) "arteria colica media") +AnnotationAssertion(Annotation( "Wikipedia:Middle_colic_artery") Annotation( ) "arteria colica media") AnnotationAssertion( "UBERON:0001196") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142586,7 +142151,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Ileocolic_artery") AnnotationAssertion( "galen:IleocolicArtery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ileocolic_artery") Annotation( ) "arteria ileocolica") +AnnotationAssertion(Annotation( "Wikipedia:Ileocolic_artery") Annotation( ) "arteria ileocolica") AnnotationAssertion( "UBERON:0001197") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142626,14 +142191,14 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "stomach mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "stomach organ mucosa") AnnotationAssertion( "tunica mucosa (gaster)") -AnnotationAssertion(Annotation( "FMA:14907") Annotation( "FMA:TA") Annotation( ) "tunica mucosa gastricae") +AnnotationAssertion(Annotation( "FMA:14907") Annotation( "FMA:TA") Annotation( ) "tunica mucosa gastricae") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus organ mucosa") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001308") "Magenschleimhaut") -AnnotationAssertion(Annotation( "BTO:0001308") Annotation( "Wikipedia:Gastric_mucosa") Annotation( ) "tunica mucosa gastris") +AnnotationAssertion(Annotation( "BTO:0001308") Annotation( "Wikipedia:Gastric_mucosa") Annotation( ) "tunica mucosa gastris") AnnotationAssertion( "UBERON:0001199") AnnotationAssertion( ) AnnotationAssertion( ) @@ -142658,7 +142223,7 @@ AnnotationAssertion( "stomach submucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of ventriculus") AnnotationAssertion( "tela submucosa (gaster)") -AnnotationAssertion(Annotation( "FMA:14908") Annotation( "FMA:TA") Annotation( ) "tela submucosa gastricae") +AnnotationAssertion(Annotation( "FMA:14908") Annotation( "FMA:TA") Annotation( ) "tela submucosa gastricae") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus submucosa") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002110") "submucous layer of stomach") @@ -142712,7 +142277,7 @@ AnnotationAssertion( "OBOL:automatic") "stomach wall serosa") AnnotationAssertion(Annotation( "OBOL:automatic") "stomach wall serous membrane") AnnotationAssertion( "tunica serosa (gaster)") -AnnotationAssertion(Annotation( "FMA:14914") Annotation( "FMA:TA") Annotation( ) "tunica serosa gastricae") +AnnotationAssertion(Annotation( "FMA:14914") Annotation( "FMA:TA") Annotation( ) "tunica serosa gastricae") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus anatomical wall serosa") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus anatomical wall serous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "ventriculus wall serosa") @@ -142785,7 +142350,7 @@ AnnotationAssertion(Annotation( "small intestine mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "small intestine organ mucosa") AnnotationAssertion( "tunica mucosa (intestinum tenue)") -AnnotationAssertion(Annotation( "FMA:14933") Annotation( "FMA:TA") Annotation( ) "tunica mucosa intestini tenuis") +AnnotationAssertion(Annotation( "FMA:14933") Annotation( "FMA:TA") Annotation( ) "tunica mucosa intestini tenuis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001204") AnnotationAssertion(rdfs:label "mucosa of small intestine") @@ -142810,7 +142375,7 @@ AnnotationAssertion( "small intestine submucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of small bowel") AnnotationAssertion( "tela submucosa (intestinum tenue)") -AnnotationAssertion(Annotation( "BTO:0002112") Annotation( ) "tela submucosa intestini tenuis") +AnnotationAssertion(Annotation( "BTO:0002112") Annotation( ) "tela submucosa intestini tenuis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001205") AnnotationAssertion( ) @@ -142837,7 +142402,7 @@ AnnotationAssertion( "small intestine serosa") AnnotationAssertion(Annotation( "OBOL:automatic") "small intestine serous membrane") AnnotationAssertion( "tunica serosa (intestinum tenue)") -AnnotationAssertion(Annotation( "FMA:14938") Annotation( "FMA:TA") Annotation( ) "tunica serosa intestini tenuis") +AnnotationAssertion(Annotation( "FMA:14938") Annotation( "FMA:TA") Annotation( ) "tunica serosa intestini tenuis") AnnotationAssertion( "visceral peritoneum of small intestine") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001206") @@ -142864,7 +142429,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "mucosa of organ of large intestine") AnnotationAssertion( "mucous membrane of large intestine") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of large intestine") -AnnotationAssertion(Annotation( "FMA:14969") Annotation( "FMA:TA") Annotation( ) "tunica mucosa intestini crassi") +AnnotationAssertion(Annotation( "FMA:14969") Annotation( "FMA:TA") Annotation( ) "tunica mucosa intestini crassi") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001207") AnnotationAssertion(rdfs:label "mucosa of large intestine") @@ -142884,7 +142449,7 @@ AnnotationAssertion( "ncithesaurus:Large_Intestinal_Submucosa") "UMLS:C0734204") AnnotationAssertion( "large intestinal submucosa") AnnotationAssertion( "large intestine submucosa") -AnnotationAssertion(Annotation( "FMA:14970") Annotation( "FMA:TA") Annotation( ) "tela submucosa intestini crassi") +AnnotationAssertion(Annotation( "FMA:14970") Annotation( "FMA:TA") Annotation( ) "tela submucosa intestini crassi") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002111") "submucous layer of large intestine") AnnotationAssertion( "UBERON:0001208") @@ -142907,7 +142472,7 @@ AnnotationAssertion( "OBOL:automatic") "large intestine serous membrane") AnnotationAssertion( "serous coat of large intestine") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of large intestine") -AnnotationAssertion(Annotation( "FMA:14975") Annotation( "FMA:TA") Annotation( ) "tunica serosa intestini crassi") +AnnotationAssertion(Annotation( "FMA:14975") Annotation( "FMA:TA") Annotation( ) "tunica serosa intestini crassi") AnnotationAssertion( "visceral peritoneum of large intestine") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001209") @@ -142934,7 +142499,7 @@ AnnotationAssertion( "NCIT:C12771") AnnotationAssertion(Annotation( "ncithesaurus:Peyer_s_Patch") "UMLS:C0031272") AnnotationAssertion( "Wikipedia:Peyer's_patch") -AnnotationAssertion(Annotation( ) "noduli lymphoidei aggregati") +AnnotationAssertion(Annotation( ) "noduli lymphoidei aggregati") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001784") "Peyers gland") AnnotationAssertion(Annotation( "BTO:0001784") "Peyers patch") @@ -142969,8 +142534,8 @@ AnnotationAssertion(Annotation( "FMA:15060") "gland of Brunner") AnnotationAssertion( "submucosal gland of duodenum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0002376") Annotation( ) "glandula duodenales") -AnnotationAssertion(Annotation( "BTO:0002376") Annotation( ) "glandula duodenales Brunneri") +AnnotationAssertion(Annotation( "BTO:0002376") Annotation( ) "glandula duodenales") +AnnotationAssertion(Annotation( "BTO:0002376") Annotation( ) "glandula duodenales Brunneri") AnnotationAssertion( "UBERON:0001212") AnnotationAssertion( ) AnnotationAssertion( ) @@ -143011,7 +142576,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "intestinal villus layer") AnnotationAssertion(Annotation( "MA:0001563") "small intestine villus") -AnnotationAssertion(Annotation( "Wikipedia:Intestinal_villus") Annotation( ) "villi intestinales") +AnnotationAssertion(Annotation( "Wikipedia:Intestinal_villus") Annotation( ) "villi intestinales") AnnotationAssertion( "UBERON:0001213") AnnotationAssertion( ) AnnotationAssertion( ) @@ -143041,7 +142606,7 @@ AnnotationAssertion( "Wikipedia:Inferior_mesenteric_vein") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002782") "lower mesenteric vein") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_mesenteric_vein") Annotation( ) "vena mesenterica inferior") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_mesenteric_vein") Annotation( ) "vena mesenterica inferior") AnnotationAssertion( "UBERON:0001215") AnnotationAssertion( ) AnnotationAssertion( ) @@ -143060,7 +142625,7 @@ AnnotationAssertion( "MA:0002153") AnnotationAssertion( "Wikipedia:Jejunal_veins") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Jejunal_veins") Annotation( ) "venae jejunales") +AnnotationAssertion(Annotation( "Wikipedia:Jejunal_veins") Annotation( ) "venae jejunales") AnnotationAssertion( "UBERON:0001216") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal vein") @@ -143099,7 +142664,7 @@ AnnotationAssertion( "Wikipedia:Middle_colic_vein") AnnotationAssertion( "vena colica media (intermedia)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Middle_colic_vein") Annotation( ) "vena colica media") +AnnotationAssertion(Annotation( "Wikipedia:Middle_colic_vein") Annotation( ) "vena colica media") AnnotationAssertion( "UBERON:0001218") AnnotationAssertion( ) AnnotationAssertion( ) @@ -143121,7 +142686,7 @@ AnnotationAssertion( "ncithesaurus:Ileocolic_Vein") "UMLS:C0226744") AnnotationAssertion( "Wikipedia:Ileocolic_vein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ileocolic_vein") Annotation( ) "vena ileocolica") +AnnotationAssertion(Annotation( "Wikipedia:Ileocolic_vein") Annotation( ) "vena ileocolica") AnnotationAssertion( "UBERON:0001219") AnnotationAssertion( ) AnnotationAssertion( ) @@ -143183,7 +142748,7 @@ AnnotationAssertion( "kidney pelvis") AnnotationAssertion( "pelvis of ureter") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Renal_pelvis") Annotation( ) "p. renallis") +AnnotationAssertion(Annotation( "Wikipedia:Renal_pelvis") Annotation( ) "p. renallis") AnnotationAssertion(Annotation( "MP:0004194") "pyelum") AnnotationAssertion( "UBERON:0001224") AnnotationAssertion( ) @@ -143219,7 +142784,7 @@ AnnotationAssertion( "ncithesaurus:Renal_Cortex") "UMLS:C0022655") AnnotationAssertion( "Wikipedia:Renal_cortex") AnnotationAssertion( "galen:CortexOfKidney") -AnnotationAssertion(Annotation( "FMA:15581") Annotation( "FMA:TA") Annotation( ) "cortex renalis") +AnnotationAssertion(Annotation( "FMA:15581") Annotation( "FMA:TA") Annotation( ) "cortex renalis") AnnotationAssertion( "kidney cortex") AnnotationAssertion( "renal cortex") AnnotationAssertion( "uberon") @@ -143292,9 +142857,9 @@ AnnotationAssertion( "ZFA:0005281") AnnotationAssertion(Annotation( "MA:0000376") Annotation( ) "Malphigian corpuscle") AnnotationAssertion(Annotation( "ZFA:0005281") "Malpighian corpuscle") -AnnotationAssertion(Annotation( ) "corpusculum renale") +AnnotationAssertion(Annotation( ) "corpusculum renale") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Renal_corpuscle") Annotation( ) "corpusculum renis") +AnnotationAssertion(Annotation( "Wikipedia:Renal_corpuscle") Annotation( ) "corpusculum renis") AnnotationAssertion(Annotation( "MA:0000376") "cortical renal corpuscle") AnnotationAssertion(Annotation( "Wikipedia:Renal_corpuscle") "kidney corpuscle") AnnotationAssertion( "UBERON:0001229") @@ -143335,7 +142900,7 @@ AnnotationAssertion( "ZFA:0005310") AnnotationAssertion(Annotation( "http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron") "Bowman's capsule") AnnotationAssertion(Annotation( "KUPO:0001001") "Bowmans capsule") -AnnotationAssertion(Annotation( ) "capsula glomerularis") +AnnotationAssertion(Annotation( ) "capsula glomerularis") AnnotationAssertion(Annotation( "TAO:0005254") "renal glomerular capsule") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "TAO:0005254") "Bowman's capsule") @@ -143343,7 +142908,7 @@ AnnotationAssertion(Annotation( "UBERON:cjm") "Malpighian capsule") AnnotationAssertion(Annotation( "BTO:0002297") "Mueller capsule") AnnotationAssertion(Annotation( "BTO:0002297") "Muellerian capsule") -AnnotationAssertion(Annotation( ) "capsula glomeruli") +AnnotationAssertion(Annotation( ) "capsula glomeruli") AnnotationAssertion(Annotation( "TAO:0005310") "pronephric glomerular capsule") AnnotationAssertion( "UBERON:0001230") AnnotationAssertion( ) @@ -143418,7 +142983,7 @@ AnnotationAssertion( "GO:0072044") "collecting duct") AnnotationAssertion( "kidney collecting duct") AnnotationAssertion(Annotation( "FMA:15628") "renal collecting tubule") -AnnotationAssertion(Annotation( "Wikipedia:Connecting_tubule") Annotation( ) "tubulus renalis arcuatus") +AnnotationAssertion(Annotation( "Wikipedia:Connecting_tubule") Annotation( ) "tubulus renalis arcuatus") AnnotationAssertion( "tubulus renalis colligens") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Connecting_tubule") "arcuate renal tubule") @@ -143450,7 +143015,7 @@ AnnotationAssertion( "NCIT:C49325") AnnotationAssertion( "SCTID:281625001") AnnotationAssertion(Annotation( "ncithesaurus:Right_Adrenal_Gland") "UMLS:C0229559") -AnnotationAssertion(Annotation( ) "glandula suprarenalis dexter") +AnnotationAssertion(Annotation( ) "glandula suprarenalis dexter") AnnotationAssertion( "right suprarenal gland") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001233") @@ -143468,7 +143033,7 @@ AnnotationAssertion( "NCIT:C49322") AnnotationAssertion( "SCTID:281626000") AnnotationAssertion(Annotation( "ncithesaurus:Left_Adrenal_Gland") "UMLS:C0229560") -AnnotationAssertion(Annotation( ) "glandula suprarenalis sinister") +AnnotationAssertion(Annotation( ) "glandula suprarenalis sinister") AnnotationAssertion( "left suprarenal gland") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001234") @@ -143503,7 +143068,7 @@ AnnotationAssertion( "cortex of suprarenal gland") AnnotationAssertion( "suprarenal cortex") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0000045") Annotation( "Wikipedia:Adrenal_cortex") Annotation( ) "cortex glandulae suprarenalis") +AnnotationAssertion(Annotation( "BTO:0000045") Annotation( "Wikipedia:Adrenal_cortex") Annotation( ) "cortex glandulae suprarenalis") AnnotationAssertion( "suprarenal") AnnotationAssertion( "UBERON:0001235") AnnotationAssertion( ) @@ -143543,7 +143108,7 @@ AnnotationAssertion( "XAO:0000166") AnnotationAssertion( "adrenal gland medulla") AnnotationAssertion( "medulla (glandula suprarenalis)") -AnnotationAssertion(Annotation( "FMA:15633") Annotation( "FMA:TA") Annotation( ) "medulla glandulae suprarenalis") +AnnotationAssertion(Annotation( "FMA:15633") Annotation( "FMA:TA") Annotation( ) "medulla glandulae suprarenalis") AnnotationAssertion(Annotation( "OBOL:automatic") "medulla of adrenal gland") AnnotationAssertion( "medulla of suprarenal gland") AnnotationAssertion( "suprarenal medulla") @@ -143750,7 +143315,7 @@ AnnotationAssertion( "BTO:0001680") AnnotationAssertion( "CALOHA:TS-2005") AnnotationAssertion( "EV:0100082") -AnnotationAssertion( "FBbt:00047153") +AnnotationAssertion(Annotation( ) "FBbt:00047153") AnnotationAssertion( "FMA:15711") AnnotationAssertion( "GAID:312") AnnotationAssertion( "MA:0000331") @@ -143814,7 +143379,7 @@ AnnotationAssertion( "Wikipedia:Falciform_ligament") AnnotationAssertion( "falciform ligament of liver") AnnotationAssertion( "ligamentum falciforme (hepatis)") -AnnotationAssertion(Annotation( "FMA:15823") Annotation( "FMA:TA") Annotation( ) "ligamentum falciforme hepatis") +AnnotationAssertion(Annotation( "FMA:15823") Annotation( "FMA:TA") Annotation( ) "ligamentum falciforme hepatis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001247") AnnotationAssertion( ) @@ -143869,12 +143434,12 @@ AnnotationAssertion( "SCTID:27579002") AnnotationAssertion(Annotation( "ncithesaurus:Splenic_Red_Pulp") "UMLS:C0229687") AnnotationAssertion( "Wikipedia:Red_pulp") -AnnotationAssertion(Annotation( "FMA:15844") Annotation( "FMA:TA") Annotation( ) "pulpa rubra") +AnnotationAssertion(Annotation( "FMA:15844") Annotation( "FMA:TA") Annotation( ) "pulpa rubra") AnnotationAssertion( "red pulp") AnnotationAssertion( "spleen red pulp") AnnotationAssertion( "splenic red pulp") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Red_pulp") Annotation( ) "pulpa splenica") +AnnotationAssertion(Annotation( "Wikipedia:Red_pulp") Annotation( ) "pulpa splenica") AnnotationAssertion( "UBERON:0001250") AnnotationAssertion( ) AnnotationAssertion( ) @@ -143920,8 +143485,8 @@ AnnotationAssertion( "SCTID:392273001") AnnotationAssertion( "SCTID:47879001") AnnotationAssertion( "external adventitia of ureter") -AnnotationAssertion(Annotation( "FMA:15892") Annotation( "FMA:TA") Annotation( ) "tunica adventitia (ureter)") -AnnotationAssertion(Annotation( "FMA:15892") Annotation( "FMA:TA") Annotation( ) "tunica adventitia ureteris") +AnnotationAssertion(Annotation( "FMA:15892") Annotation( "FMA:TA") Annotation( ) "tunica adventitia (ureter)") +AnnotationAssertion(Annotation( "FMA:15892") Annotation( "FMA:TA") Annotation( ) "tunica adventitia ureteris") AnnotationAssertion( "ureter adventitia") AnnotationAssertion( "ureteral adventitia") AnnotationAssertion( "uberon") @@ -144005,7 +143570,7 @@ AnnotationAssertion( "Wikipedia:Urinary_bladder") AnnotationAssertion( "XAO:0000154") AnnotationAssertion( "galen:UrinaryBladder") -AnnotationAssertion(Annotation( "Wikipedia:Urinary_bladder") Annotation( ) "vesica urinaria") +AnnotationAssertion(Annotation( "Wikipedia:Urinary_bladder") Annotation( ) "vesica urinaria") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Urinary_bladder") "urocyst") AnnotationAssertion(Annotation( "BTO:0001418") "vesica") @@ -144069,14 +143634,14 @@ AnnotationAssertion( "Lieutaud's trigone") AnnotationAssertion( "bladder trigone") AnnotationAssertion( "deep trigone") -AnnotationAssertion(Annotation( "FMA:15910") Annotation( "FMA:TA") Annotation( ) "musculus trigoni vesicae profundus") +AnnotationAssertion(Annotation( "FMA:15910") Annotation( "FMA:TA") Annotation( ) "musculus trigoni vesicae profundus") AnnotationAssertion( "trigone of bladder") -AnnotationAssertion(Annotation( "FMA:15910") Annotation( "FMA:TA") Annotation( ) "trigonum vesicae") +AnnotationAssertion(Annotation( "FMA:15910") Annotation( "FMA:TA") Annotation( ) "trigonum vesicae") AnnotationAssertion( "urinary bladder trigone") AnnotationAssertion( "vesical trigone") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35174") "dorsal bladder neck") -AnnotationAssertion(Annotation( "Wikipedia:Trigone_of_urinary_bladder") Annotation( ) "trigonum vesicae urinariae") +AnnotationAssertion(Annotation( "Wikipedia:Trigone_of_urinary_bladder") Annotation( ) "trigonum vesicae urinariae") AnnotationAssertion( "UBERON:0001257") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144101,13 +143666,13 @@ AnnotationAssertion(Annotation( "Wikipedia:Neck_of_urinary_bladder") AnnotationAssertion( "galen:UrinaryBladderNeck") AnnotationAssertion( "bladder neck") -AnnotationAssertion(Annotation( "FMA:15912") Annotation( "FMA:TA") Annotation( ) "cervix vesicae") -AnnotationAssertion(Annotation( "FMA:15912") Annotation( "FMA:TA") Annotation( ) "collum vesicae") +AnnotationAssertion(Annotation( "FMA:15912") Annotation( "FMA:TA") Annotation( ) "cervix vesicae") +AnnotationAssertion(Annotation( "FMA:15912") Annotation( "FMA:TA") Annotation( ) "collum vesicae") AnnotationAssertion( "neck of bladder") AnnotationAssertion( "urinary bladder neck") AnnotationAssertion( "vesical neck") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neck_of_urinary_bladder") Annotation( ) "cervix vesicae urinariae") +AnnotationAssertion(Annotation( "Wikipedia:Neck_of_urinary_bladder") Annotation( ) "cervix vesicae urinariae") AnnotationAssertion( "UBERON:0001258") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144134,8 +143699,8 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "mucosa of bladder") AnnotationAssertion( "mucous membrane of bladder") AnnotationAssertion( "mucous membrane of urinary bladder") -AnnotationAssertion(Annotation( "FMA:15928") Annotation( "FMA:TA") Annotation( ) "tunica mucosa (vesica urinaria)") -AnnotationAssertion(Annotation( "FMA:15928") Annotation( "FMA:TA") Annotation( ) "tunica mucosa vesicae") +AnnotationAssertion(Annotation( "FMA:15928") Annotation( "FMA:TA") Annotation( ) "tunica mucosa (vesica urinaria)") +AnnotationAssertion(Annotation( "FMA:15928") Annotation( "FMA:TA") Annotation( ) "tunica mucosa vesicae") AnnotationAssertion(Annotation( "MP:MP") "tunica mucosa vesicae urinariae") AnnotationAssertion( "urinary bladder mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "urinary bladder mucous membrane") @@ -144164,8 +143729,8 @@ AnnotationAssertion( "serous coat of urinary bladder") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of bladder") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of urinary bladder") -AnnotationAssertion(Annotation( "FMA:15932") Annotation( "FMA:TA") Annotation( ) "tunica serosa (vesica urinaria)") -AnnotationAssertion(Annotation( "FMA:15932") Annotation( "FMA:TA") Annotation( ) "tunica serosa vesicae") +AnnotationAssertion(Annotation( "FMA:15932") Annotation( "FMA:TA") Annotation( ) "tunica serosa (vesica urinaria)") +AnnotationAssertion(Annotation( "FMA:15932") Annotation( "FMA:TA") Annotation( ) "tunica serosa vesicae") AnnotationAssertion( "urinary bladder serosa") AnnotationAssertion(Annotation( "OBOL:automatic") "urinary bladder serous membrane") AnnotationAssertion( "visceral peritoneum of urinary bladder") @@ -144235,13 +143800,14 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "MP:0009145") "The secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct.") AnnotationAssertion( ) +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0000028") AnnotationAssertion( "EMAPA:35651") AnnotationAssertion( "FMA:16011") AnnotationAssertion( "MA:0002417") AnnotationAssertion( "NCIT:C49268") AnnotationAssertion( "SCTID:247604006") AnnotationAssertion(Annotation( "ncithesaurus:Pancreatic_Acinus") "UMLS:C0227578") -AnnotationAssertion(Annotation( "FMA:16011") Annotation( ) "acinus pancreaticus") +AnnotationAssertion(Annotation( "FMA:16011") Annotation( ) "acinus pancreaticus") AnnotationAssertion( "pancreas acinus") AnnotationAssertion( "uberon") AnnotationAssertion( "pancreatic acinar") @@ -144356,6 +143922,7 @@ AnnotationAssertion( "EMAPA:35683") AnnotationAssertion( "FMA:16515") AnnotationAssertion( "MA:0002531") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001202") AnnotationAssertion( "Wikipedia:Peritoneal_fluid") AnnotationAssertion( "ncithesaurus:Peritoneal_Fluid") AnnotationAssertion( "uberon") @@ -144406,12 +143973,12 @@ AnnotationAssertion( "FMA:16585") "coxal bone") AnnotationAssertion(Annotation( "FMA:16585") "hip bone") AnnotationAssertion(Annotation( "FMA:16585") "innominate bone") -AnnotationAssertion(Annotation( ) "os coxa") -AnnotationAssertion(Annotation( "FMA:16585") Annotation( "FMA:TA") Annotation( ) "os coxae") +AnnotationAssertion(Annotation( ) "os coxa") +AnnotationAssertion(Annotation( "FMA:16585") Annotation( "FMA:TA") Annotation( ) "os coxae") AnnotationAssertion(Annotation( "FMA:16585") "pelvic bone") AnnotationAssertion( "uberon") AnnotationAssertion( "basipterygium") -AnnotationAssertion(Annotation( "Wikipedia:Hip_bone") Annotation( ) "os innominatum") +AnnotationAssertion(Annotation( "Wikipedia:Hip_bone") Annotation( ) "os innominatum") AnnotationAssertion( "UBERON:0001272") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144448,7 +144015,7 @@ AnnotationAssertion(Annotation( "ilium bone") AnnotationAssertion( "os iliacum") AnnotationAssertion( "os ilii") -AnnotationAssertion(Annotation( "FMA:16589") Annotation( "FMA:TA") Annotation( ) "os ilium") +AnnotationAssertion(Annotation( "FMA:16589") Annotation( "FMA:TA") Annotation( ) "os ilium") AnnotationAssertion( "uberon") AnnotationAssertion( "illium") AnnotationAssertion( "UBERON:0001273") @@ -144486,7 +144053,7 @@ AnnotationAssertion( "EMAPA:18727") "ischial bone") AnnotationAssertion( "ischium bone") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "AAO:0000860") Annotation( "Wikipedia:Ischium") Annotation( ) "os ischii") +AnnotationAssertion(Annotation( "AAO:0000860") Annotation( "Wikipedia:Ischium") Annotation( ) "os ischii") AnnotationAssertion( "UBERON:0001274") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144598,7 +144165,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Portal_triad") AnnotationAssertion( "trias hepatica") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Portal_triad") Annotation( ) "trias hepatica") +AnnotationAssertion(Annotation( "Wikipedia:Portal_triad") Annotation( ) "trias hepatica") AnnotationAssertion( "UBERON:0001279") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144663,7 +144230,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "sinusoid of liver") AnnotationAssertion(Annotation( "OBOL:automatic") "sinusoidal blood vessel of liver") AnnotationAssertion( "vas capillare sinusoideum") -AnnotationAssertion(Annotation( "Wikipedia:Hepatic_sinusoid") Annotation( ) "vas sinusoideum") +AnnotationAssertion(Annotation( "Wikipedia:Hepatic_sinusoid") Annotation( ) "vas sinusoideum") AnnotationAssertion( "uberon") AnnotationAssertion( "hepatic sinusoids") AnnotationAssertion( "UBERON:0001281") @@ -144694,7 +144261,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Canals_of_Hering") AnnotationAssertion(Annotation( "FMA:17545") "canal of Herring") AnnotationAssertion(Annotation( "FMA:17545") "cholangiole") -AnnotationAssertion(Annotation( "FMA:17545") Annotation( "FMA:TA") Annotation( ) "ductus interlobularis bilifer") +AnnotationAssertion(Annotation( "FMA:17545") Annotation( "FMA:TA") Annotation( ) "ductus interlobularis bilifer") AnnotationAssertion( "uberon") AnnotationAssertion( "canal of Hering") AnnotationAssertion(Annotation( "Wikipedia:Canals_of_Hering") Annotation( ) "canals of Hering") @@ -144737,8 +144304,8 @@ AnnotationAssertion( "ZFA:0005282") AnnotationAssertion(Annotation( "EMAPA:28491") "mature nephron") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nephron") Annotation( ) "nephroneum") -AnnotationAssertion(Annotation( "Wikipedia:Nephron") Annotation( ) "tubulus renalis") +AnnotationAssertion(Annotation( "Wikipedia:Nephron") Annotation( ) "nephroneum") +AnnotationAssertion(Annotation( "Wikipedia:Nephron") Annotation( ) "tubulus renalis") AnnotationAssertion( "UBERON:0001285") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144812,8 +144379,8 @@ AnnotationAssertion( "first convoluted tubule") AnnotationAssertion(Annotation( "EMAPA:28287") "kidney proximal convoluted tubule") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "renal proximal convoluted tubule") -AnnotationAssertion(Annotation( "Wikipedia:Proximal_convoluted_tubule") Annotation( ) "tubulus contortus proximalis") -AnnotationAssertion(Annotation( ) "tubulus convolutus proximalis") +AnnotationAssertion(Annotation( "Wikipedia:Proximal_convoluted_tubule") Annotation( ) "tubulus contortus proximalis") +AnnotationAssertion(Annotation( ) "tubulus convolutus proximalis") AnnotationAssertion( "UBERON:0001287") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144851,7 +144418,7 @@ AnnotationAssertion( "Wikipedia:Loop_of_Henle") AnnotationAssertion( "Henle loop") AnnotationAssertion( "Henle's loop") -AnnotationAssertion(Annotation( "Wikipedia:Loop_of_Henle") Annotation( ) "ansa nephroni") +AnnotationAssertion(Annotation( "Wikipedia:Loop_of_Henle") Annotation( ) "ansa nephroni") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001288") AnnotationAssertion( ) @@ -144943,7 +144510,7 @@ AnnotationAssertion( "FMA:17722") "thick ascending limb of distal tubule") AnnotationAssertion(Annotation( "FMA:17722") "tubulus rectus distalis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thick_ascending_limb_of_loop_of_Henle") Annotation( ) "tubulus rectus distalis") +AnnotationAssertion(Annotation( "Wikipedia:Thick_ascending_limb_of_loop_of_Henle") Annotation( ) "tubulus rectus distalis") AnnotationAssertion( "UBERON:0001291") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144973,8 +144540,8 @@ AnnotationAssertion( "tubulus contortus distalis") AnnotationAssertion( "uberon") AnnotationAssertion( "second convoluted tubule") -AnnotationAssertion(Annotation( "Wikipedia:Distal_convoluted_tubule") Annotation( ) "tubulus contortus distalis") -AnnotationAssertion(Annotation( ) "tubulus convolutus distalis") +AnnotationAssertion(Annotation( "Wikipedia:Distal_convoluted_tubule") Annotation( ) "tubulus contortus distalis") +AnnotationAssertion(Annotation( ) "tubulus convolutus distalis") AnnotationAssertion( "UBERON:0001292") AnnotationAssertion( ) AnnotationAssertion( ) @@ -144999,8 +144566,8 @@ AnnotationAssertion( "outer zone of medulla of kidney") AnnotationAssertion( "outer zone of renal medulla") AnnotationAssertion(Annotation( "BTO:0001746") "renal outer medulla") -AnnotationAssertion(Annotation( "FMA:17733") Annotation( "FMA:TA") Annotation( ) "zona externa (medullaris renalis)") -AnnotationAssertion(Annotation( "FMA:17733") Annotation( "FMA:TA") Annotation( ) "zona externa medullae renalis") +AnnotationAssertion(Annotation( "FMA:17733") Annotation( "FMA:TA") Annotation( ) "zona externa (medullaris renalis)") +AnnotationAssertion(Annotation( "FMA:17733") Annotation( "FMA:TA") Annotation( ) "zona externa medullae renalis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001746") "kidney outer medulla") AnnotationAssertion(Annotation( "FMA:17733") "set of outer region of renal pyramids") @@ -145027,8 +144594,8 @@ AnnotationAssertion( "inner zone of renal medulla") AnnotationAssertion(Annotation( "BTO:0001745") "renal inner medulla") AnnotationAssertion( "set of inner region of renal pyramids") -AnnotationAssertion(Annotation( "FMA:17734") Annotation( "FMA:TA") Annotation( ) "zona interna (medullaris renalis)") -AnnotationAssertion(Annotation( "FMA:17734") Annotation( "FMA:TA") Annotation( ) "zona interna medullae renalis") +AnnotationAssertion(Annotation( "FMA:17734") Annotation( "FMA:TA") Annotation( ) "zona interna (medullaris renalis)") +AnnotationAssertion(Annotation( "FMA:17734") Annotation( "FMA:TA") Annotation( ) "zona interna medullae renalis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001745") "kidney inner medulla") AnnotationAssertion( "UBERON:0001294") @@ -145067,7 +144634,7 @@ AnnotationAssertion(Annotation( "VHOG:0001285") AnnotationAssertion( "Wikipedia:Endometrium") AnnotationAssertion(Annotation( "FMA:17742") "tunica mucosa (endometrium)") -AnnotationAssertion(Annotation( "Wikipedia:Endometrium") Annotation( ) "tunica mucosa uteri") +AnnotationAssertion(Annotation( "Wikipedia:Endometrium") Annotation( ) "tunica mucosa uteri") AnnotationAssertion(Annotation( "BTO:0001422") "uterine endometrium") AnnotationAssertion( "uberon") AnnotationAssertion( "uterine mucosa") @@ -145107,7 +144674,7 @@ AnnotationAssertion( "Wikipedia:Myometrium") AnnotationAssertion( "tunica muscularis (myometrium)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Myometrium") Annotation( ) "tunica muscularis") +AnnotationAssertion(Annotation( "Wikipedia:Myometrium") Annotation( ) "tunica muscularis") AnnotationAssertion(Annotation( "BTO:0000907") "uterine myometrium") AnnotationAssertion( "uterine smooth muscle") AnnotationAssertion( "UBERON:0001296") @@ -145138,7 +144705,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Perimetrium") "serous coat of uterus") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of uterus") AnnotationAssertion( "tunica serosa (perimetrium)") -AnnotationAssertion(Annotation( "FMA:17744") Annotation( "FMA:TA") Annotation( ) "tunica serosa uteri") +AnnotationAssertion(Annotation( "FMA:17744") Annotation( "FMA:TA") Annotation( ) "tunica serosa uteri") AnnotationAssertion( "uterine serosa") AnnotationAssertion( "uterus serosa") AnnotationAssertion(Annotation( "OBOL:automatic") "uterus serous membrane") @@ -145312,8 +144879,8 @@ AnnotationAssertion(Annotation( "MA:0001707") "ovary follicle") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0001110") "egg follicle") -AnnotationAssertion(Annotation( "Wikipedia:Ovarian_follicle") Annotation( ) "folliculi ovarici primarii") -AnnotationAssertion(Annotation( "Wikipedia:Ovarian_follicle") Annotation( ) "folliculi ovarici vesiculosi") +AnnotationAssertion(Annotation( "Wikipedia:Ovarian_follicle") Annotation( ) "folliculi ovarici primarii") +AnnotationAssertion(Annotation( "Wikipedia:Ovarian_follicle") Annotation( ) "folliculi ovarici vesiculosi") AnnotationAssertion( "UBERON:0001305") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145362,7 +144929,7 @@ AnnotationAssertion(Annotation( "Wikipedia:External_iliac_artery") AnnotationAssertion( "galen:ExternalIliacArtery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:External_iliac_artery") Annotation( ) "arteria iliaca externa") +AnnotationAssertion(Annotation( "Wikipedia:External_iliac_artery") Annotation( ) "arteria iliaca externa") AnnotationAssertion( "UBERON:0001308") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145385,7 +144952,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_artery") AnnotationAssertion( "galen:InternalIliacArtery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_artery") Annotation( ) "arteria iliaca interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_artery") Annotation( ) "arteria iliaca interna") AnnotationAssertion(Annotation( "BTO:0004667") "hypogastric artery") AnnotationAssertion( "UBERON:0001309") AnnotationAssertion( ) @@ -145416,7 +144983,7 @@ AnnotationAssertion( "ncithesaurus:Umbilical_Artery") "UMLS:C0041632") AnnotationAssertion( "Wikipedia:Umbilical_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Umbilical_artery") Annotation( ) "a. umbilicalis") +AnnotationAssertion(Annotation( "Wikipedia:Umbilical_artery") Annotation( ) "a. umbilicalis") AnnotationAssertion( "UBERON:0001310") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145439,10 +145006,10 @@ AnnotationAssertion( "SCTID:43210002") AnnotationAssertion(Annotation( "ncithesaurus:Inferior_Vesical_Artery") "UMLS:C0226377") AnnotationAssertion( "Wikipedia:Inferior_vesical_artery") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_vesical_artery") Annotation( ) "arteria vesicali inferior") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_vesical_artery") Annotation( ) "arteria vesicalis inferior") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_vesical_artery") Annotation( ) "arteria vesicali inferior") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_vesical_artery") Annotation( ) "arteria vesicalis inferior") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_vesical_artery") Annotation( ) "arteria vesicalis inferior") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_vesical_artery") Annotation( ) "arteria vesicalis inferior") AnnotationAssertion( "UBERON:0001311") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145463,10 +145030,10 @@ AnnotationAssertion( "SCTID:113268007") AnnotationAssertion(Annotation( "ncithesaurus:Superior_Vesical_Artery") "UMLS:C0226376") AnnotationAssertion( "Wikipedia:Superior_vesical_artery") -AnnotationAssertion(Annotation( "Wikipedia:Superior_vesical_artery") Annotation( ) "arteria vesicali superior") -AnnotationAssertion(Annotation( "Wikipedia:Superior_vesical_artery") Annotation( ) "arteria vesicalis superior") +AnnotationAssertion(Annotation( "Wikipedia:Superior_vesical_artery") Annotation( ) "arteria vesicali superior") +AnnotationAssertion(Annotation( "Wikipedia:Superior_vesical_artery") Annotation( ) "arteria vesicalis superior") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Superior_vesical_artery") Annotation( ) "arteriae vesicales superiores") +AnnotationAssertion(Annotation( "Wikipedia:Superior_vesical_artery") Annotation( ) "arteriae vesicales superiores") AnnotationAssertion( "UBERON:0001312") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145490,7 +145057,7 @@ AnnotationAssertion(Annotation( "Wikipedia:External_iliac_vein") AnnotationAssertion( "galen:ExternalIliacVein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:External_iliac_vein") Annotation( ) "vena iliaca externa") +AnnotationAssertion(Annotation( "Wikipedia:External_iliac_vein") Annotation( ) "vena iliaca externa") AnnotationAssertion( "UBERON:0001316") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145518,8 +145085,8 @@ AnnotationAssertion( "galen:InternalIliacVein") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0002139") Annotation( "Wikipedia:Internal_iliac_vein") "hypogastric vein") -AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_vein") Annotation( ) "v. hypogastrica") -AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_vein") Annotation( ) "v. iliaca interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_vein") Annotation( ) "v. hypogastrica") +AnnotationAssertion(Annotation( "Wikipedia:Internal_iliac_vein") Annotation( ) "v. iliaca interna") AnnotationAssertion( "UBERON:0001317") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145589,7 +145156,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Sciatic_nerve") "ischiadic nerve") AnnotationAssertion(Annotation( "Wikipedia:Sciatic_nerve") "ischiatic nerve") -AnnotationAssertion(Annotation( "BTO:0001221") Annotation( "Wikipedia:Sciatic_nerve") Annotation( ) "nervus ischiadicus") +AnnotationAssertion(Annotation( "BTO:0001221") Annotation( "Wikipedia:Sciatic_nerve") Annotation( ) "nervus ischiadicus") AnnotationAssertion(Annotation( "BTO:0001221") "nervus sciaticus") AnnotationAssertion( "UBERON:0001322") AnnotationAssertion( ) @@ -145617,7 +145184,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Tibial_nerve") AnnotationAssertion( "medial popliteal nerve") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Tibial_nerve") Annotation( ) "n. tibialis") +AnnotationAssertion(Annotation( "Wikipedia:Tibial_nerve") Annotation( ) "n. tibialis") AnnotationAssertion( "UBERON:0001323") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tibial nerve") @@ -145675,7 +145242,7 @@ AnnotationAssertion( "Wikipedia:Pampiniform_venous_plexus") AnnotationAssertion( "pampiniform venous plexus") AnnotationAssertion( "plexus of veins of fascia of prostate") -AnnotationAssertion(Annotation( "FMA:19607") Annotation( "FMA:TA") Annotation( ) "plexus venosus pampiniformis") +AnnotationAssertion(Annotation( "FMA:19607") Annotation( "FMA:TA") Annotation( ) "plexus venosus pampiniformis") AnnotationAssertion( "venous plexus of fascia of prostate") AnnotationAssertion( "venous plexus of fascia of prostate gland") AnnotationAssertion( "uberon") @@ -145723,11 +145290,11 @@ AnnotationAssertion(Annotation( "Wikipedia:Foreskin") AnnotationAssertion(Annotation( "FMA:19639") "penile prepuce") AnnotationAssertion(Annotation( "EMAPA:18989") "prepuce of male") -AnnotationAssertion(Annotation( "FMA:19639") Annotation( "FMA:TA") Annotation( ) "preputium penis") +AnnotationAssertion(Annotation( "FMA:19639") Annotation( "FMA:TA") Annotation( ) "preputium penis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:19639") "foreskin") -AnnotationAssertion(Annotation( "Wikipedia:Foreskin") Annotation( ) "praeputium") -AnnotationAssertion(Annotation( "Wikipedia:Foreskin") Annotation( ) "prepucium") +AnnotationAssertion(Annotation( "Wikipedia:Foreskin") Annotation( ) "praeputium") +AnnotationAssertion(Annotation( "Wikipedia:Foreskin") Annotation( ) "prepucium") AnnotationAssertion( "UBERON:0001332") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145793,7 +145360,7 @@ AnnotationAssertion( "ncithesaurus:Prostatic_Portion_of_the_Male_Urethra") "UMLS:C0458450") AnnotationAssertion( "Wikipedia:Prostatic_urethra") AnnotationAssertion(Annotation( "MP:0011777") "male prostatic urethra") -AnnotationAssertion(Annotation( "MP:0011777") Annotation( "Wikipedia:Prostatic_urethra") Annotation( ) "pars prostatica urethrae") +AnnotationAssertion(Annotation( "MP:0011777") Annotation( "Wikipedia:Prostatic_urethra") Annotation( ) "pars prostatica urethrae") AnnotationAssertion(Annotation( "MP:0011777") "prostatic part of male urethra") AnnotationAssertion( "prostatic part of urethra") AnnotationAssertion( "uberon") @@ -145865,7 +145432,7 @@ AnnotationAssertion( "testis - seminiferous tubule") AnnotationAssertion( "tubuli seminiferi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Seminiferous_tubule") Annotation( ) "tubuli seminiferi") +AnnotationAssertion(Annotation( "Wikipedia:Seminiferous_tubule") Annotation( ) "tubuli seminiferi") AnnotationAssertion( "UBERON:0001343") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145915,7 +145482,7 @@ AnnotationAssertion( "FMA:20117") AnnotationAssertion( "MA:0000058") AnnotationAssertion( "MAT:0000199") -AnnotationAssertion( "MESH:D052436") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D052436") AnnotationAssertion( "MIAA:0000199") AnnotationAssertion( "NCIT:C33889") AnnotationAssertion(Annotation( "ncithesaurus:White_Adipose_Tissue") "UMLS:C1704223") @@ -145925,7 +145492,7 @@ AnnotationAssertion( "unilocular adipose tissue") AnnotationAssertion( "white fat") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:White_adipose_tissue") Annotation( ) "textus adiposus albus") +AnnotationAssertion(Annotation( "Wikipedia:White_adipose_tissue") Annotation( ) "textus adiposus albus") AnnotationAssertion( "UBERON:0001347") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145959,7 +145526,7 @@ AnnotationAssertion( "textus adiposus fuscus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Brown_adipose_tissue") Annotation( ) "BAT") -AnnotationAssertion(Annotation( "Wikipedia:Brown_adipose_tissue") Annotation( ) "textus adiposus fuscus") +AnnotationAssertion(Annotation( "Wikipedia:Brown_adipose_tissue") Annotation( ) "textus adiposus fuscus") AnnotationAssertion( "UBERON:0001348") AnnotationAssertion( ) AnnotationAssertion( ) @@ -145980,7 +145547,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_sac") AnnotationAssertion( "lachrymal sac") AnnotationAssertion( "lacrymal sac") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_sac") Annotation( ) "saccus lacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_sac") Annotation( ) "saccus lacrimalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001351") AnnotationAssertion( ) @@ -146090,7 +145657,7 @@ AnnotationAssertion( "Wikipedia:Medial_circumflex_femoral_artery") AnnotationAssertion( "medial femoral circumflex artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Medial_circumflex_femoral_artery") Annotation( ) "arteria circumflexa femoris medialis") +AnnotationAssertion(Annotation( "Wikipedia:Medial_circumflex_femoral_artery") Annotation( ) "arteria circumflexa femoris medialis") AnnotationAssertion( "UBERON:0001356") AnnotationAssertion( ) AnnotationAssertion( ) @@ -146158,7 +145725,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Femoral_vein") AnnotationAssertion( "galen:FemoralVein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Femoral_vein") Annotation( ) "vena femoralis") +AnnotationAssertion(Annotation( "Wikipedia:Femoral_vein") Annotation( ) "vena femoralis") AnnotationAssertion( "UBERON:0001361") AnnotationAssertion( ) AnnotationAssertion( ) @@ -146185,7 +145752,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0003271") "large saphenous vein") AnnotationAssertion( "long saphenous vein") -AnnotationAssertion(Annotation( "Wikipedia:Great_saphenous_vein") Annotation( ) "vena saphena magna") +AnnotationAssertion(Annotation( "Wikipedia:Great_saphenous_vein") Annotation( ) "vena saphena magna") AnnotationAssertion( "UBERON:0001363") AnnotationAssertion( ) AnnotationAssertion( ) @@ -146279,7 +145846,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BTO:0004348") "Rolando's area") AnnotationAssertion(Annotation( "BTO:0004348") "excitable area") -AnnotationAssertion(Annotation( "Wikipedia:Primary_motor_cortex") Annotation( ) "gyrus precentralis") +AnnotationAssertion(Annotation( "Wikipedia:Primary_motor_cortex") Annotation( ) "gyrus precentralis") AnnotationAssertion(Annotation( "BTO:0004348") "motor area") AnnotationAssertion(Annotation( "MP:0000798") Annotation( "Wikipedia:Primary_motor_cortex") "prefrontal gyrus") AnnotationAssertion(Annotation( "BAMS:MOp") "primary motor area") @@ -146314,7 +145881,7 @@ AnnotationAssertion( "ncithesaurus:Axillary_Artery") "UMLS:C0004455") AnnotationAssertion( "Wikipedia:Axillary_artery") AnnotationAssertion( "galen:AxillaryArtery") -AnnotationAssertion(Annotation( "Wikipedia:Axillary_artery") Annotation( ) "arteria axillaris") +AnnotationAssertion(Annotation( "Wikipedia:Axillary_artery") Annotation( ) "arteria axillaris") AnnotationAssertion(Annotation( "FMA:22654") "axillary part of subclavian artery") AnnotationAssertion( "axillary part of trunk of subclavian artery") AnnotationAssertion( "uberon") @@ -146340,7 +145907,7 @@ AnnotationAssertion( "ncithesaurus:Subscapular_Artery") "UMLS:C0226422") AnnotationAssertion( "Wikipedia:Subscapular_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Subscapular_artery") Annotation( ) "arteria subscapularis") +AnnotationAssertion(Annotation( "Wikipedia:Subscapular_artery") Annotation( ) "arteria subscapularis") AnnotationAssertion( "UBERON:0001397") AnnotationAssertion( ) AnnotationAssertion( ) @@ -146455,7 +146022,7 @@ AnnotationAssertion( "SCTID:229759004") AnnotationAssertion( "VSAO:0000305") AnnotationAssertion( "galen:ShoulderGirdle") -AnnotationAssertion(Annotation( "FMA:23217") Annotation( "FMA:TA") Annotation( ) "cingulum membri superioris") +AnnotationAssertion(Annotation( "FMA:23217") Annotation( "FMA:TA") Annotation( ) "cingulum membri superioris") AnnotationAssertion( "girdle - pectoral") AnnotationAssertion(Annotation( "FMA:TA") "cingulum membri superioris") AnnotationAssertion(Annotation( "FMA:23217") "shoulder girdle") @@ -146685,6 +146252,7 @@ AnnotationAssertion(Annotation( "EMAPA:35250") AnnotationAssertion( "FMA:24018") AnnotationAssertion( "MA:0001461") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000071538") AnnotationAssertion( "NCIT:C52714") AnnotationAssertion( "SCTID:361728003") AnnotationAssertion(Annotation( "ncithesaurus:Cortical_Bone") "UMLS:C0222661") @@ -146696,9 +146264,9 @@ AnnotationAssertion( "cortical bone") AnnotationAssertion( "cortical bone tissue") AnnotationAssertion( "cortical region of bone") -AnnotationAssertion(Annotation( "FMA:24018") Annotation( "FMA:TA") Annotation( ) "substantia compacta") +AnnotationAssertion(Annotation( "FMA:24018") Annotation( "FMA:TA") Annotation( ) "substantia compacta") AnnotationAssertion( "substantia compacta (pars ossea)") -AnnotationAssertion(Annotation( "FMA:24018") Annotation( "FMA:TA") Annotation( ) "substantia corticalis") +AnnotationAssertion(Annotation( "FMA:24018") Annotation( "FMA:TA") Annotation( ) "substantia corticalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001439") AnnotationAssertion( ) @@ -146729,7 +146297,7 @@ AnnotationAssertion( "fore limb skeleton") AnnotationAssertion(Annotation( "VHOG:0001256") "forelimb skeleton") AnnotationAssertion(Annotation( "FMA:24142") "free upper limb skeleton") -AnnotationAssertion(Annotation( "FMA:24139") Annotation( "FMA:TA") Annotation( ) "ossa membri superioris") +AnnotationAssertion(Annotation( "FMA:24139") Annotation( "FMA:TA") Annotation( ) "ossa membri superioris") AnnotationAssertion( "pectoral limb skeleton") AnnotationAssertion( "set of bones of upper limb") AnnotationAssertion( "skeleton of forelimb") @@ -146765,7 +146333,7 @@ AnnotationAssertion(Annotation( "VSAO:0000152") "hind-limb skeleton") AnnotationAssertion(Annotation( "VHOG:0001255") "hindlimb skeleton") AnnotationAssertion( "lower limb skeleton") -AnnotationAssertion(Annotation( "FMA:24140") Annotation( "FMA:TA") Annotation( ) "ossa membri inferioris") +AnnotationAssertion(Annotation( "FMA:24140") Annotation( "FMA:TA") Annotation( ) "ossa membri inferioris") AnnotationAssertion( "set of bones of lower limb") AnnotationAssertion(Annotation( "FMA:24144") "skeleton of free lower limb") AnnotationAssertion(Annotation( "FMA:24140") "skeleton of lower limb") @@ -146795,7 +146363,7 @@ AnnotationAssertion(Annotation( "FMA:24159") "hand skeleton") AnnotationAssertion( "manual skeleton") AnnotationAssertion( "manus skeleton") -AnnotationAssertion(Annotation( "FMA:24159") Annotation( "FMA:TA") Annotation( ) "ossa manus") +AnnotationAssertion(Annotation( "FMA:24159") Annotation( "FMA:TA") Annotation( ) "ossa manus") AnnotationAssertion(Annotation( "FMA:24159") "set of bones of hand") AnnotationAssertion(Annotation( "FMA:24159") "skeleton of hand") AnnotationAssertion( "uberon") @@ -146837,11 +146405,11 @@ AnnotationAssertion( "galen:Thorax") AnnotationAssertion( "anterolateral part of thorax") AnnotationAssertion( "front of thorax") -AnnotationAssertion(Annotation( "FMA:24816") Annotation( "FMA:TA") Annotation( ) "pectus") +AnnotationAssertion(Annotation( "FMA:24816") Annotation( "FMA:TA") Annotation( ) "pectus") AnnotationAssertion( "ventral part of thoracic region") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0000031") "thoracic body wall") -AnnotationAssertion(Annotation( "FMA:9576") Annotation( "Wikipedia:Chest") Annotation( ) "thorax") +AnnotationAssertion(Annotation( "FMA:9576") Annotation( "Wikipedia:Chest") Annotation( ) "thorax") AnnotationAssertion( "UBERON:0001443") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147050,7 +146618,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Face") AnnotationAssertion( "galen:Face") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Face") Annotation( ) "facia/facies") +AnnotationAssertion(Annotation( "Wikipedia:Face") Annotation( ) "facia/facies") AnnotationAssertion(Annotation( "BTO:0003369") "visage") AnnotationAssertion( "UBERON:0001456") AnnotationAssertion( ) @@ -147147,7 +146715,7 @@ AnnotationAssertion( "VHOG:0000339") AnnotationAssertion( "Wikipedia:Arm") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Arm") Annotation( ) "brachium") +AnnotationAssertion(Annotation( "Wikipedia:Arm") Annotation( ) "brachium") AnnotationAssertion(Annotation( "MESH:A01.378.800") "upper extremity") AnnotationAssertion( "UBERON:0001460") AnnotationAssertion( ) @@ -147183,7 +146751,7 @@ AnnotationAssertion( "elbow limb segment") AnnotationAssertion( "elbow region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Elbow") Annotation( ) "articulatio cubiti") +AnnotationAssertion(Annotation( "Wikipedia:Elbow") Annotation( ) "articulatio cubiti") AnnotationAssertion( "UBERON:0001461") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147219,7 +146787,7 @@ AnnotationAssertion( "FMA:24964") "hip region") AnnotationAssertion(Annotation( "FMA:24964") "regio coxae") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Hip") Annotation( ) "coxa") +AnnotationAssertion(Annotation( "Wikipedia:Hip") Annotation( ) "coxa") AnnotationAssertion( "UBERON:0001464") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147287,7 +146855,7 @@ AnnotationAssertion(Annotation( "pes digit") AnnotationAssertion(Annotation( "FMA:25046") "toe") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Toe") Annotation( ) "digiti pedis") +AnnotationAssertion(Annotation( "Wikipedia:Toe") Annotation( ) "digiti pedis") AnnotationAssertion(Annotation( "BTO:0002348") "digitipedis") AnnotationAssertion( "UBERON:0001466") AnnotationAssertion( ) @@ -147321,7 +146889,7 @@ AnnotationAssertion( "galen:Shoulder") AnnotationAssertion( "shoulder region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Shoulder") Annotation( ) "articulatio humeri") +AnnotationAssertion(Annotation( "Wikipedia:Shoulder") Annotation( ) "articulatio humeri") AnnotationAssertion( "UBERON:0001467") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147373,7 +146941,7 @@ AnnotationAssertion( "sterno clavicular joint") AnnotationAssertion(Annotation( "Wikipedia:Sternoclavicular_articulation") "sternoclavicular articulation") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sternoclavicular_articulation") Annotation( ) "articulatio sternoclavicularis") +AnnotationAssertion(Annotation( "Wikipedia:Sternoclavicular_articulation") Annotation( ) "articulatio sternoclavicularis") AnnotationAssertion( "UBERON:0001469") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sternoclavicular joint") @@ -147401,7 +146969,7 @@ AnnotationAssertion(Annotation( "VHOG:0001002") AnnotationAssertion( "Wikipedia:Glenohumeral_joint") AnnotationAssertion( "galen:ShoulderJoint") -AnnotationAssertion(Annotation( "FMA:25912") Annotation( "FMA:TA") Annotation( ) "articulatio humeri") +AnnotationAssertion(Annotation( "FMA:25912") Annotation( "FMA:TA") Annotation( ) "articulatio humeri") AnnotationAssertion(Annotation( "FMA:25912") "humeral joint") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Glenohumeral_joint") "humeroscapular joint") @@ -147444,7 +147012,7 @@ AnnotationAssertion( "Wikipedia:Vaginal_venous_plexus") AnnotationAssertion( "venous vaginal plexus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Vaginal_venous_plexus") Annotation( ) "plexus venosus vaginalis") +AnnotationAssertion(Annotation( "Wikipedia:Vaginal_venous_plexus") Annotation( ) "plexus venosus vaginalis") AnnotationAssertion( "UBERON:0001472") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vaginal venous plexus") @@ -147467,7 +147035,7 @@ AnnotationAssertion( "FMA:30315") AnnotationAssertion( "MA:0000138") AnnotationAssertion( "MAT:0000443") -AnnotationAssertion( "MESH:D042601") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D042601") AnnotationAssertion( "NCIT:C33038") AnnotationAssertion( "SCTID:279089004") AnnotationAssertion( "TAO:0005105") @@ -147477,7 +147045,7 @@ AnnotationAssertion( "XAO:0000375") AnnotationAssertion( "lymph vessel") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lymphatic_vessel") Annotation( ) "vas lymphaticum") +AnnotationAssertion(Annotation( "Wikipedia:Lymphatic_vessel") Annotation( ) "vas lymphaticum") AnnotationAssertion( "UBERON:0001473") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147572,7 +147140,7 @@ AnnotationAssertion( "Wikipedia:Deltoid_muscle") "common shoulder muscle") AnnotationAssertion(Annotation( "Wikipedia:Deltoid_muscle") "deltoideus") AnnotationAssertion(Annotation( "Wikipedia:Deltoid_muscle") "deltoideus muscle") -AnnotationAssertion(Annotation( "Wikipedia:Deltoid_muscle") Annotation( ) "musculus deltoideus") +AnnotationAssertion(Annotation( "Wikipedia:Deltoid_muscle") Annotation( ) "musculus deltoideus") AnnotationAssertion( "UBERON:0001476") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147610,7 +147178,7 @@ AnnotationAssertion( "ncithesaurus:Sesamoid_Bone") "UMLS:C0036846") AnnotationAssertion( "Wikipedia:Sesamoid_bone") AnnotationAssertion( "galen:SessamoidBone") -AnnotationAssertion(Annotation( "Wikipedia:Sesamoid_bone") Annotation( ) "ossa sesamoidea") +AnnotationAssertion(Annotation( "Wikipedia:Sesamoid_bone") Annotation( ) "ossa sesamoidea") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001479") AnnotationAssertion( ) @@ -147683,12 +147251,12 @@ AnnotationAssertion( "ncithesaurus:Joint_Capsule") "UMLS:C0206207") AnnotationAssertion( "Wikipedia:Articular_capsule") AnnotationAssertion( "galen:JointCapsule") -AnnotationAssertion(Annotation( "FMA:34836") Annotation( "FMA:TA") Annotation( ) "capsula articularis") +AnnotationAssertion(Annotation( "FMA:34836") Annotation( "FMA:TA") Annotation( ) "capsula articularis") AnnotationAssertion( "fibrous capsule of joint") AnnotationAssertion( "joint capsule") AnnotationAssertion( "joint fibrous capsule") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Articular_capsule") Annotation( ) "capsulae articulares") +AnnotationAssertion(Annotation( "Wikipedia:Articular_capsule") Annotation( ) "capsulae articulares") AnnotationAssertion( "UBERON:0001484") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147715,7 +147283,7 @@ AnnotationAssertion( "galen:KneeJoint") AnnotationAssertion(Annotation( "OBOL:automatic") "joint of knee") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Knee") Annotation( ) "articulatio genus") +AnnotationAssertion(Annotation( "Wikipedia:Knee") Annotation( ) "articulatio genus") AnnotationAssertion( "UBERON:0001485") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147740,7 +147308,7 @@ AnnotationAssertion( "MESH:D033023") AnnotationAssertion( "SCTID:244555001") AnnotationAssertion( "Wikipedia:Joints_of_foot") -AnnotationAssertion(Annotation( "FMA:71349") Annotation( "FMA:TA") Annotation( ) "articulationes pedis") +AnnotationAssertion(Annotation( "FMA:71349") Annotation( "FMA:TA") Annotation( ) "articulationes pedis") AnnotationAssertion( "foot joint") AnnotationAssertion(Annotation( "OBOL:automatic") "hind limb autopod joint") AnnotationAssertion( "joint of pes") @@ -147797,7 +147365,7 @@ AnnotationAssertion( "MA:0000452") AnnotationAssertion( "SCTID:244546004") AnnotationAssertion( "Wikipedia:Joints_of_hand") -AnnotationAssertion(Annotation( "FMA:71345") Annotation( "FMA:TA") Annotation( ) "articulationes manus") +AnnotationAssertion(Annotation( "FMA:71345") Annotation( "FMA:TA") Annotation( ) "articulationes manus") AnnotationAssertion( "hand joint") AnnotationAssertion( "joint of hand") AnnotationAssertion( "joint of manus") @@ -147826,7 +147394,7 @@ AnnotationAssertion(Annotation( "VHOG:0000997") AnnotationAssertion( "Wikipedia:Elbow") AnnotationAssertion( "galen:ElbowJoint") -AnnotationAssertion(Annotation( ) "articulatio cubiti") +AnnotationAssertion(Annotation( ) "articulatio cubiti") AnnotationAssertion(Annotation( "OBOL:automatic") "cubital region joint") AnnotationAssertion(Annotation( "OBOL:automatic") "joint of cubital region") AnnotationAssertion(Annotation( "OBOL:automatic") "joint of elbow") @@ -147882,7 +147450,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Axillary_nerve") "auxillery nerve") AnnotationAssertion(Annotation( "Wikipedia:Axillary_nerve") "circumflex nerve") -AnnotationAssertion(Annotation( "Wikipedia:Axillary_nerve") Annotation( ) "nervus axillaris") +AnnotationAssertion(Annotation( "Wikipedia:Axillary_nerve") Annotation( ) "nervus axillaris") AnnotationAssertion( "UBERON:0001493") AnnotationAssertion( ) AnnotationAssertion( ) @@ -147946,8 +147514,8 @@ AnnotationAssertion( "EMAPA:17014") "ascending thoracic aorta") AnnotationAssertion( "pars ascendens aortae") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ascending_aorta") Annotation( ) "aorta ascendens") -AnnotationAssertion(Annotation( "Wikipedia:Ascending_aorta") Annotation( ) "pars ascendens aortae") +AnnotationAssertion(Annotation( "Wikipedia:Ascending_aorta") Annotation( ) "aorta ascendens") +AnnotationAssertion(Annotation( "Wikipedia:Ascending_aorta") Annotation( ) "pars ascendens aortae") AnnotationAssertion( "UBERON:0001496") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148070,7 +147638,7 @@ AnnotationAssertion( "SCTID:181300001") AnnotationAssertion( "VHOG:0001196") AnnotationAssertion( "Wikipedia:Arch_of_aorta") -AnnotationAssertion(Annotation( "FMA:3768") Annotation( "FMA:TA") Annotation( ) "arcus aortae") +AnnotationAssertion(Annotation( "FMA:3768") Annotation( "FMA:TA") Annotation( ) "arcus aortae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:3768") "aortic arch") AnnotationAssertion(Annotation( "GAID:471") "thoracic aorta") @@ -148182,8 +147750,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Descending_aorta") AnnotationAssertion(Annotation( "FMA:3784") "pars descendens aortae") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Descending_aorta") Annotation( ) "aorta descendens") -AnnotationAssertion(Annotation( "Wikipedia:Descending_aorta") Annotation( ) "pars descendens aortae") +AnnotationAssertion(Annotation( "Wikipedia:Descending_aorta") Annotation( ) "aorta descendens") +AnnotationAssertion(Annotation( "Wikipedia:Descending_aorta") Annotation( ) "pars descendens aortae") AnnotationAssertion( "UBERON:0001514") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148215,11 +147783,11 @@ AnnotationAssertion( "ncithesaurus:Thoracic_Aorta") "UMLS:C1522460") AnnotationAssertion( "Wikipedia:Thoracic_aorta") AnnotationAssertion( "galen:ThoracicAorta") -AnnotationAssertion(Annotation( "FMA:3786") Annotation( "FMA:TA") Annotation( ) "aorta thoracica") +AnnotationAssertion(Annotation( "FMA:3786") Annotation( "FMA:TA") Annotation( ) "aorta thoracica") AnnotationAssertion( "thoracic part of aorta") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thoracic_aorta") Annotation( ) "aorta thoracalis") -AnnotationAssertion(Annotation( "Wikipedia:Thoracic_aorta") Annotation( ) "pars thoracica aortae") +AnnotationAssertion(Annotation( "Wikipedia:Thoracic_aorta") Annotation( ) "aorta thoracalis") +AnnotationAssertion(Annotation( "Wikipedia:Thoracic_aorta") Annotation( ) "pars thoracica aortae") AnnotationAssertion( "UBERON:0001515") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148252,8 +147820,8 @@ AnnotationAssertion(Annotation( "FMA:3789") "pars abdominalis aortae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002976") "abdominal part of aorta") -AnnotationAssertion(Annotation( "BTO:0002976") Annotation( "Wikipedia:Abdominal_aorta") Annotation( ) "aorta abdominalis") -AnnotationAssertion(Annotation( "BTO:0002976") Annotation( "Wikipedia:Abdominal_aorta") Annotation( ) "pars abdominalis aortae") +AnnotationAssertion(Annotation( "BTO:0002976") Annotation( "Wikipedia:Abdominal_aorta") Annotation( ) "aorta abdominalis") +AnnotationAssertion(Annotation( "BTO:0002976") Annotation( "Wikipedia:Abdominal_aorta") Annotation( ) "pars abdominalis aortae") AnnotationAssertion( "UBERON:0001516") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148350,9 +147918,9 @@ AnnotationAssertion( "galen:BrachioCephalicArtery") AnnotationAssertion(Annotation( "MA:0001922") "brachiocephalic trunk") AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_artery") "innominate artery") -AnnotationAssertion(Annotation( "FMA:3932") Annotation( "FMA:TA") Annotation( ) "truncus brachiocephalicus") +AnnotationAssertion(Annotation( "FMA:3932") Annotation( "FMA:TA") Annotation( ) "truncus brachiocephalicus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_artery") Annotation( ) "truncus brachiocephalicus") +AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_artery") Annotation( ) "truncus brachiocephalicus") AnnotationAssertion( "UBERON:0001529") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148392,7 +147960,7 @@ AnnotationAssertion(Annotation( "FMA:3939") Annotation( ) "common carotid artery") AnnotationAssertion(Annotation( "FMA:3939") "trunk of common carotid tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Common_carotid_artery") Annotation( ) "a. carotis communis") +AnnotationAssertion(Annotation( "Wikipedia:Common_carotid_artery") Annotation( ) "a. carotis communis") AnnotationAssertion( "UBERON:0001530") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148458,7 +148026,7 @@ AnnotationAssertion(Annotation( "AAO:0010219") "internal carotid") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "ICA") -AnnotationAssertion(Annotation( "Wikipedia:Internal_carotid_artery") Annotation( ) "arteria carotis interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_carotid_artery") Annotation( ) "arteria carotis interna") AnnotationAssertion( "UBERON:0001532") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148498,13 +148066,13 @@ AnnotationAssertion(Annotation( "Wikipedia:Subclavian_artery") AnnotationAssertion( "XAO:0000365") AnnotationAssertion( "ZFA:0005086") -AnnotationAssertion(Annotation( "XAO:0000365") Annotation( ) "arteria subclavia") +AnnotationAssertion(Annotation( "XAO:0000365") Annotation( ) "arteria subclavia") AnnotationAssertion( "arterial tree of upper limb") AnnotationAssertion( "pectoral artery") AnnotationAssertion( "subclavian arterial tree") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "PA") -AnnotationAssertion(Annotation( "Wikipedia:Subclavian_artery") Annotation( ) "arteria subclavia") +AnnotationAssertion(Annotation( "Wikipedia:Subclavian_artery") Annotation( ) "arteria subclavia") AnnotationAssertion( "UBERON:0001533") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148534,7 +148102,7 @@ AnnotationAssertion( "SCTID:244246000") AnnotationAssertion(Annotation( "ncithesaurus:Right_Subclavian_Artery") "UMLS:C0226261") AnnotationAssertion( "Wikipedia:Subclavian_artery") -AnnotationAssertion(Annotation( "FMA:3953") Annotation( "FMA:TA") Annotation( ) "arteria subclavia dextra") +AnnotationAssertion(Annotation( "FMA:3953") Annotation( "FMA:TA") Annotation( ) "arteria subclavia dextra") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001534") AnnotationAssertion( ) @@ -148586,7 +148154,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Popliteal_vein") AnnotationAssertion( "galen:PoplitealVein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Popliteal_vein") Annotation( ) "vena poplitea") +AnnotationAssertion(Annotation( "Wikipedia:Popliteal_vein") Annotation( ) "vena poplitea") AnnotationAssertion( "UBERON:0001544") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148609,7 +148177,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Anterior_tibial_vein") AnnotationAssertion( "galen:AnteriorTibialVein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Anterior_tibial_vein") Annotation( ) "venae tibiales anteriores") +AnnotationAssertion(Annotation( "Wikipedia:Anterior_tibial_vein") Annotation( ) "venae tibiales anteriores") AnnotationAssertion( "UBERON:0001545") AnnotationAssertion( ) AnnotationAssertion( ) @@ -148634,7 +148202,7 @@ AnnotationAssertion( "galen:LesserSaphenousVein") AnnotationAssertion( "lesser saphenous vein") AnnotationAssertion( "short saphenous vein") -AnnotationAssertion(Annotation( "Wikipedia:Small_saphenous_vein") Annotation( ) "vena saphena parva") +AnnotationAssertion(Annotation( "Wikipedia:Small_saphenous_vein") Annotation( ) "vena saphena parva") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001547") AnnotationAssertion( ) @@ -148656,7 +148224,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Dorsal_metatarsal_veins") AnnotationAssertion( "metatarsal vein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Dorsal_metatarsal_veins") Annotation( ) "venae metatarsales dorsales") +AnnotationAssertion(Annotation( "Wikipedia:Dorsal_metatarsal_veins") Annotation( ) "venae metatarsales dorsales") AnnotationAssertion( "UBERON:0001549") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dorsal metatarsal vein") @@ -148673,7 +148241,7 @@ AnnotationAssertion( "Wikipedia:Medial_marginal_vein") AnnotationAssertion( "medial marginal vein of foot") AnnotationAssertion( "vena marginalis medialis") -AnnotationAssertion(Annotation( "FMA:44420") Annotation( "FMA:TA") Annotation( ) "vena marginalis medialis pedis") +AnnotationAssertion(Annotation( "FMA:44420") Annotation( "FMA:TA") Annotation( ) "vena marginalis medialis pedis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001550") AnnotationAssertion( ) @@ -148742,9 +148310,10 @@ AnnotationAssertion( "EHDAA2:0000726") AnnotationAssertion( "EHDAA:518") AnnotationAssertion( "EMAPA:16247") -AnnotationAssertion( "FBbt:00003125") +AnnotationAssertion(Annotation( ) "FBbt:00003125") AnnotationAssertion( "FMA:45615") AnnotationAssertion( "MA:0000917") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D041981") AnnotationAssertion( "NCIT:C34082") AnnotationAssertion( "TAO:0000112") AnnotationAssertion( "TGMA:0001819") @@ -148774,12 +148343,14 @@ SubClassOf(Annotation( "NCB # Class: (lower urinary tract) AnnotationAssertion(Annotation( "FMA:45659") "Subdivision of urinary system which consists of the urinary bladder and the urethra.") +AnnotationAssertion( ) AnnotationAssertion( "FMA:45659") AnnotationAssertion( "MA:0002636") AnnotationAssertion( "SCTID:181420004") AnnotationAssertion( "galen:LowerUrinaryTract") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001556") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lower urinary tract") @@ -149020,7 +148591,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Facial_muscles") "mimetic muscles") AnnotationAssertion(Annotation( "Wikipedia:Facial_muscles") "muscle of facil expression") AnnotationAssertion(Annotation( "Wikipedia:Facial_muscles") "muscles of facial expression") -AnnotationAssertion(Annotation( "Wikipedia:Facial_muscles") Annotation( ) "musculi faciei") +AnnotationAssertion(Annotation( "Wikipedia:Facial_muscles") Annotation( ) "musculi faciei") AnnotationAssertion( "UBERON:0001577") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149065,7 +148636,7 @@ AnnotationAssertion( "ZFA:0000249") AnnotationAssertion(Annotation( "BIRNLEX:1319") "neuronames:32") AnnotationAssertion( "first cranial nerve") -AnnotationAssertion(Annotation( "FMA:46787") Annotation( "FMA:TA") Annotation( ) "nervus olfactorius [i]") +AnnotationAssertion(Annotation( "FMA:46787") Annotation( "FMA:TA") Annotation( ) "nervus olfactorius [i]") AnnotationAssertion(Annotation( "EHDAA2:0001293") "olfactory I") AnnotationAssertion( "olfactory i nerve") AnnotationAssertion( "olfactory nerve [I]") @@ -149075,7 +148646,7 @@ AnnotationAssertion( "BTO:0003648") "fila olfactoria") AnnotationAssertion(Annotation( "NeuroNames:32") "nerve I") AnnotationAssertion(Annotation( "BTO:0003648") "nerve of smell") -AnnotationAssertion(Annotation( "BTO:0003648") Annotation( "Wikipedia:Olfactory_nerve") Annotation( ) "nervus olfactorius") +AnnotationAssertion(Annotation( "BTO:0003648") Annotation( "Wikipedia:Olfactory_nerve") Annotation( ) "nervus olfactorius") AnnotationAssertion(Annotation( "NeuroNames:32") "olfactoria fila") AnnotationAssertion(Annotation( "BTO:0003648") "olfactory fila") AnnotationAssertion( "UBERON:0001579") @@ -149102,7 +148673,7 @@ AnnotationAssertion( "SCTID:244245001") AnnotationAssertion(Annotation( "ncithesaurus:Left_Subclavian_Artery") "UMLS:C0226262") AnnotationAssertion( "Wikipedia:Subclavian_artery") -AnnotationAssertion(Annotation( "FMA:4694") Annotation( "FMA:TA") Annotation( ) "arteria subclavia (sinistra)") +AnnotationAssertion(Annotation( "FMA:4694") Annotation( "FMA:TA") Annotation( ) "arteria subclavia (sinistra)") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001584") AnnotationAssertion( ) @@ -149141,8 +148712,8 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "VHOG:0001195") "cranial vena cava") AnnotationAssertion( "precava") -AnnotationAssertion(Annotation( "BTO:0002683") Annotation( "Wikipedia:Superior_vena_cava") Annotation( ) "vena cava superior") -AnnotationAssertion(Annotation( "Wikipedia:Superior_vena_cava") Annotation( ) "vena maxima") +AnnotationAssertion(Annotation( "BTO:0002683") Annotation( "Wikipedia:Superior_vena_cava") Annotation( ) "vena cava superior") +AnnotationAssertion(Annotation( "Wikipedia:Superior_vena_cava") Annotation( ) "vena maxima") AnnotationAssertion( "UBERON:0001585") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149173,7 +148744,7 @@ AnnotationAssertion( "EHDAA2:0000877") "internal jugular") AnnotationAssertion( "internal jugular venous tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Internal_jugular_vein") Annotation( ) "vena jugularis interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_jugular_vein") Annotation( ) "vena jugularis interna") AnnotationAssertion( "UBERON:0001586") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149203,7 +148774,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Subclavian_vein") AnnotationAssertion( "galen:SubclavianVein") AnnotationAssertion( "subclavian venous tree") -AnnotationAssertion(Annotation( "Wikipedia:Subclavian_vein") Annotation( ) "vena subclavia") +AnnotationAssertion(Annotation( "Wikipedia:Subclavian_vein") Annotation( ) "vena subclavia") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001587") AnnotationAssertion( ) @@ -149226,9 +148797,9 @@ AnnotationAssertion( "ncithesaurus:Thymic_Vein") "UMLS:C0226698") AnnotationAssertion( "Wikipedia:Thymic_veins") AnnotationAssertion( "thymic tributary of brachiocephalic vein") -AnnotationAssertion(Annotation( "Wikipedia:Thymic_veins") Annotation( ) "vena thymica") +AnnotationAssertion(Annotation( "Wikipedia:Thymic_veins") Annotation( ) "vena thymica") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thymic_veins") Annotation( ) "venae thymicae") +AnnotationAssertion(Annotation( "Wikipedia:Thymic_veins") Annotation( ) "venae thymicae") AnnotationAssertion( "UBERON:0001591") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thymic vein") @@ -149264,8 +148835,8 @@ AnnotationAssertion( "Wikipedia:Venous_plexus") AnnotationAssertion( "venous network") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Venous_plexus") Annotation( ) "plexus venosus") -AnnotationAssertion(Annotation( "Wikipedia:Venous_plexus") Annotation( ) "rete venosum") +AnnotationAssertion(Annotation( "Wikipedia:Venous_plexus") Annotation( ) "plexus venosus") +AnnotationAssertion(Annotation( "Wikipedia:Venous_plexus") Annotation( ) "rete venosum") AnnotationAssertion( "UBERON:0001593") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "venous plexus") @@ -149289,7 +148860,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BTO:0000654") "Bowman`s muscles") AnnotationAssertion(Annotation( "Wikipedia:Ciliary_muscle") "ciliaris") -AnnotationAssertion(Annotation( "Wikipedia:Ciliary_muscle") Annotation( ) "musculus ciliaris") +AnnotationAssertion(Annotation( "Wikipedia:Ciliary_muscle") Annotation( ) "musculus ciliaris") AnnotationAssertion( "UBERON:0001605") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149303,7 +148874,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (muscle of iris) -AnnotationAssertion(Annotation( "Wikipedia:Iris_muscle") ".") AnnotationAssertion( "revisit this, see issue #331") AnnotationAssertion( "The muscle cells of the iris are smooth muscle in mammals and amphibians, but are striated muscle in birds and reptiles. Many fish have neither, and, as a result, their irides are unable to dilate and contract, so that the pupil always remains of a fixed size[Romer, via WP]") AnnotationAssertion( "in aves, stromal mesenchymal cells may migrate to the iris and become skeletal") @@ -149346,7 +148916,7 @@ AnnotationAssertion(Annotation( "iris constrictor") AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") "iris constrictor muscle") AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") "iris sphincter") -AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") Annotation( ) "m. sphincter pupillae") +AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") Annotation( ) "m. sphincter pupillae") AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") "pupillary constrictor muscle") AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") "pupillary sphincter") AnnotationAssertion(Annotation( "Wikipedia:Iris_sphincter_muscle") "pupillary sphincter muscle") @@ -149382,13 +148952,13 @@ AnnotationAssertion( "dilator pupillae") AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") "dilator pupillae muscle") AnnotationAssertion(Annotation( "BTO:0001371") "iris dilator muscle") -AnnotationAssertion(Annotation( "FMA:49158") Annotation( "FMA:TA") Annotation( ) "musculus dilatator pupillae") +AnnotationAssertion(Annotation( "FMA:49158") Annotation( "FMA:TA") Annotation( ) "musculus dilatator pupillae") AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") "pupillary dilator muscle") AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") "radial muscle of iris") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001371") "dilator pupillae muscle") AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") "iris dilator") -AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") Annotation( ) "musculus dilatator pupillae") +AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") Annotation( ) "musculus dilatator pupillae") AnnotationAssertion(Annotation( "BTO:0001371") "musculus dilator pupillae") AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") "pupil dilator") AnnotationAssertion(Annotation( "Wikipedia:Iris_dilator_muscle") "pupil dilator muscle") @@ -149423,7 +148993,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Lingual_artery") AnnotationAssertion( "lingual branch of external carotid artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lingual_artery") Annotation( ) "arteria lingualis") +AnnotationAssertion(Annotation( "Wikipedia:Lingual_artery") Annotation( ) "arteria lingualis") AnnotationAssertion( "UBERON:0001610") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149445,7 +149015,7 @@ AnnotationAssertion( "ncithesaurus:Facial_Artery") "UMLS:C0226109") AnnotationAssertion( "Wikipedia:Facial_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Facial_artery") Annotation( ) "arteria maxillaris externa") +AnnotationAssertion(Annotation( "Wikipedia:Facial_artery") Annotation( ) "arteria maxillaris externa") AnnotationAssertion( "external maxillary artery") AnnotationAssertion( "UBERON:0001612") AnnotationAssertion( ) @@ -149466,7 +149036,7 @@ AnnotationAssertion( "ncithesaurus:Occipital_Artery") "UMLS:C0226117") AnnotationAssertion( "Wikipedia:Occipital_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Occipital_artery") Annotation( ) "arteria occipitalis") +AnnotationAssertion(Annotation( "Wikipedia:Occipital_artery") Annotation( ) "arteria occipitalis") AnnotationAssertion( "UBERON:0001613") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149491,7 +149061,7 @@ AnnotationAssertion( "ncithesaurus:Maxillary_Artery") "UMLS:C0024949") AnnotationAssertion( "Wikipedia:Maxillary_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Maxillary_artery") Annotation( ) "arteria maxillaris") +AnnotationAssertion(Annotation( "Wikipedia:Maxillary_artery") Annotation( ) "arteria maxillaris") AnnotationAssertion( "internal maxillary artery") AnnotationAssertion( "UBERON:0001616") AnnotationAssertion( ) @@ -149521,7 +149091,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Ophthalmic_artery") AnnotationAssertion( "XAO:0000368") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ophthalmic_artery") Annotation( ) "arteria ophthalmica") +AnnotationAssertion(Annotation( "Wikipedia:Ophthalmic_artery") Annotation( ) "arteria ophthalmica") AnnotationAssertion(Annotation( "Wikipedia:Ophthalmic_artery") "opthalmic artery") AnnotationAssertion( "UBERON:0001619") AnnotationAssertion( ) @@ -149575,7 +149145,7 @@ AnnotationAssertion( "ncithesaurus:Lacrimal_Artery") "UMLS:C0226171") AnnotationAssertion( "Wikipedia:Lacrimal_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_artery") Annotation( ) "a. lacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_artery") Annotation( ) "a. lacrimalis") AnnotationAssertion( "UBERON:0001622") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149607,7 +149177,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "PCA") AnnotationAssertion( "PCS") -AnnotationAssertion(Annotation( "Wikipedia:Posterior_communicating_artery") Annotation( ) "arteria cerebri communicans posterior") +AnnotationAssertion(Annotation( "Wikipedia:Posterior_communicating_artery") Annotation( ) "arteria cerebri communicans posterior") AnnotationAssertion( "UBERON:0001628") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149734,7 +149304,7 @@ AnnotationAssertion( "venous tree organ part") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:th") "vascular element") -AnnotationAssertion(Annotation( "Wikipedia:Vein") Annotation( ) "vena") +AnnotationAssertion(Annotation( "Wikipedia:Vein") Annotation( ) "vena") AnnotationAssertion(Annotation( "VHOG:0001743") Annotation( ) "venae") AnnotationAssertion( "UBERON:0001638") AnnotationAssertion( ) @@ -149767,7 +149337,7 @@ AnnotationAssertion( ) "portal vein") AnnotationAssertion(Annotation( "ZFA:0005090") "primary hepatic portal vein") AnnotationAssertion( "primary hepatic portal veins") -AnnotationAssertion(Annotation( "Wikipedia:Hepatic_portal_vein") Annotation( ) "vena portae hepatis") +AnnotationAssertion(Annotation( "Wikipedia:Hepatic_portal_vein") Annotation( ) "vena portae hepatis") AnnotationAssertion( "UBERON:0001639") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149799,14 +149369,14 @@ AnnotationAssertion( "celiac tree") AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") "coeliac artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "arteria coeliaca") -AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "arteria cœliaca") +AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "arteria coeliaca") +AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "arteria cœliaca") AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") "celiac trunk") AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") "coeliac axis") AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") "coeliac trunck") AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") "coeliac trunk") -AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "truncus coeliacus") -AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "truncus cœliacus") +AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "truncus coeliacus") +AnnotationAssertion(Annotation( "Wikipedia:Celiac_artery") Annotation( ) "truncus cœliacus") AnnotationAssertion( "UBERON:0001640") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149857,8 +149427,8 @@ AnnotationAssertion( "ZFA:0000697") AnnotationAssertion(Annotation( "BIRNLEX:869") "neuronames:549") AnnotationAssertion( "fifth cranial nerve") -AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_nerve") Annotation( ) "nervus trigeminus") -AnnotationAssertion(Annotation( "FMA:50866") Annotation( "FMA:TA") Annotation( ) "nervus trigeminus [v]") +AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_nerve") Annotation( ) "nervus trigeminus") +AnnotationAssertion(Annotation( "FMA:50866") Annotation( "FMA:TA") Annotation( ) "nervus trigeminus [v]") AnnotationAssertion(Annotation( "EHDAA2:0002084") "trigeminal V") AnnotationAssertion( "trigeminal nerve [V]") AnnotationAssertion( "trigeminal nerve tree") @@ -149921,7 +149491,7 @@ AnnotationAssertion( "facial nerve tree") AnnotationAssertion(Annotation( "OBOL:automatic") "nerve of face") AnnotationAssertion(Annotation( "ZFA:0000664") "nervus facialis") -AnnotationAssertion(Annotation( "FMA:50868") Annotation( "FMA:TA") Annotation( ) "nervus facialis [vii]") +AnnotationAssertion(Annotation( "FMA:50868") Annotation( "FMA:TA") Annotation( ) "nervus facialis [vii]") AnnotationAssertion( "seventh cranial nerve") AnnotationAssertion( "uberon") AnnotationAssertion( "CN-VII") @@ -149929,7 +149499,7 @@ AnnotationAssertion( "BAMS:7n") "facial nerve or its root") AnnotationAssertion(Annotation( "BAMS:7n") "facial nerve/root") AnnotationAssertion(Annotation( "NeuroNames:551") "nerve VII") -AnnotationAssertion(Annotation( "Wikipedia:Facial_nerve") Annotation( ) "nervus facialis") +AnnotationAssertion(Annotation( "Wikipedia:Facial_nerve") Annotation( ) "nervus facialis") AnnotationAssertion( "UBERON:0001647") AnnotationAssertion( ) AnnotationAssertion( ) @@ -149985,14 +149555,14 @@ AnnotationAssertion( "cochleovestibular nerve") AnnotationAssertion( "cranial nerve VIII") AnnotationAssertion( "eighth cranial nerve") -AnnotationAssertion(Annotation( "FMA:50869") Annotation( "FMA:TA") Annotation( ) "nervus vestibulocochlearis [viii]") +AnnotationAssertion(Annotation( "FMA:50869") Annotation( "FMA:TA") Annotation( ) "nervus vestibulocochlearis [viii]") AnnotationAssertion( "stato-acoustic nerve") AnnotationAssertion( "vestibulocochlear VIII nerve") AnnotationAssertion( "vestibulocochlear nerve [VIII]") AnnotationAssertion( "vestibulocochlear nerve tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:553") Annotation( ) "nervus octavus") -AnnotationAssertion(Annotation( "NeuroNames:553") Annotation( ) "nervus statoacusticus") +AnnotationAssertion(Annotation( "NeuroNames:553") Annotation( ) "nervus octavus") +AnnotationAssertion(Annotation( "NeuroNames:553") Annotation( ) "nervus statoacusticus") AnnotationAssertion(Annotation( "BTO:0003490") "nervus vestibulocochlearis") AnnotationAssertion( "octaval nerve") AnnotationAssertion( "statoacoustic nerve") @@ -150043,13 +149613,13 @@ AnnotationAssertion( "glossopharyngeal nerve [IX]") AnnotationAssertion( "glossopharyngeal nerve tree") AnnotationAssertion(Annotation( "ZFA:0000668") "nervus glossopharyngeus") -AnnotationAssertion(Annotation( "FMA:50870") Annotation( "FMA:TA") Annotation( ) "nervus glossopharyngeus [ix]") +AnnotationAssertion(Annotation( "FMA:50870") Annotation( "FMA:TA") Annotation( ) "nervus glossopharyngeus [ix]") AnnotationAssertion( "ninth cranial nerve") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "CN-IX") AnnotationAssertion( "cranial nerve IX") AnnotationAssertion(Annotation( "NeuroNames:701") "nerve IX") -AnnotationAssertion(Annotation( "Wikipedia:Glossopharyngeal_nerve") Annotation( ) "nervus glossopharyngeus") +AnnotationAssertion(Annotation( "Wikipedia:Glossopharyngeal_nerve") Annotation( ) "nervus glossopharyngeus") AnnotationAssertion( "UBERON:0001649") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150103,14 +149673,14 @@ AnnotationAssertion(Annotation( "hypoglossal XII nerve") AnnotationAssertion( "hypoglossal nerve [XII]") AnnotationAssertion( "hypoglossal nerve tree") -AnnotationAssertion(Annotation( "FMA:50871") Annotation( "FMA:TA") Annotation( ) "nervus hypoglossus [xii]") +AnnotationAssertion(Annotation( "FMA:50871") Annotation( "FMA:TA") Annotation( ) "nervus hypoglossus [xii]") AnnotationAssertion( "twelfth cranial nerve") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "VHOG:0000693") "CN-XII") AnnotationAssertion(Annotation( "BAMS:12n") "hypoglossal nerve/ root") AnnotationAssertion(Annotation( "NeuroNames:704") "nerve XII") -AnnotationAssertion(Annotation( "NeuroNames:704") Annotation( ) "nervi hypoglossalis") -AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_nerve") Annotation( ) "nervus hypoglossus") +AnnotationAssertion(Annotation( "NeuroNames:704") Annotation( ) "nervi hypoglossalis") +AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_nerve") Annotation( ) "nervus hypoglossus") AnnotationAssertion( "UBERON:0001650") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150138,7 +149708,7 @@ AnnotationAssertion( "right main pulmonary artery") AnnotationAssertion( "right pulmonary arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Right_pulmonary_artery") Annotation( ) "arteria pulmonalis dextra") +AnnotationAssertion(Annotation( "Wikipedia:Right_pulmonary_artery") Annotation( ) "arteria pulmonalis dextra") AnnotationAssertion( "UBERON:0001651") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150166,7 +149736,7 @@ AnnotationAssertion( "left main pulmonary artery") AnnotationAssertion( "left pulmonary arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Left_pulmonary_artery") Annotation( ) "arteria pulmonalis sinistra") +AnnotationAssertion(Annotation( "Wikipedia:Left_pulmonary_artery") Annotation( ) "arteria pulmonalis sinistra") AnnotationAssertion( "UBERON:0001652") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150196,7 +149766,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "vein of face") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Facial_vein") Annotation( ) "anterior facial vein") -AnnotationAssertion(Annotation( "Wikipedia:Facial_vein") Annotation( ) "vena facialis anterior") +AnnotationAssertion(Annotation( "Wikipedia:Facial_vein") Annotation( ) "vena facialis anterior") AnnotationAssertion( "UBERON:0001653") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150221,8 +149791,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Cerebral_veins") AnnotationAssertion( "XAO:0004160") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cerebral_veins") Annotation( ) "venae cerebri") -AnnotationAssertion(Annotation( "Wikipedia:Cerebral_veins") Annotation( ) "venae encephali") +AnnotationAssertion(Annotation( "Wikipedia:Cerebral_veins") Annotation( ) "venae cerebri") +AnnotationAssertion(Annotation( "Wikipedia:Cerebral_veins") Annotation( ) "venae encephali") AnnotationAssertion( "UBERON:0001663") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebral vein") @@ -150291,8 +149861,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_ganglion") Annotation( ) "Gasserian ganglia") AnnotationAssertion( "gV") AnnotationAssertion(Annotation( "BTO:0001231") "ganglion of trigeminal nerve") -AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_ganglion") Annotation( ) "ganglion semilunare") -AnnotationAssertion(Annotation( "BTO:0001231") Annotation( "Wikipedia:Trigeminal_ganglion") Annotation( ) "ganglion trigeminale") +AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_ganglion") Annotation( ) "ganglion semilunare") +AnnotationAssertion(Annotation( "BTO:0001231") Annotation( "Wikipedia:Trigeminal_ganglion") Annotation( ) "ganglion trigeminale") AnnotationAssertion(Annotation( ) "trigeminal ganglia") AnnotationAssertion( "trigeminus ganglion") AnnotationAssertion( "UBERON:0001675") @@ -150324,7 +149894,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "http://palaeos.com/vertebrates/bones/braincase/occiput.html") "occipital complex") AnnotationAssertion( "occipital squama") -AnnotationAssertion(Annotation( "Wikipedia:Occipital_bone") Annotation( ) "os occipitale") +AnnotationAssertion(Annotation( "Wikipedia:Occipital_bone") Annotation( ) "os occipitale") AnnotationAssertion( "UBERON:0001676") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150355,12 +149925,12 @@ AnnotationAssertion( "SCTID:272676008") AnnotationAssertion(Annotation( "ncithesaurus:Sphenoid_Bone") "UMLS:C0037884") AnnotationAssertion( "Wikipedia:Sphenoid_bone") -AnnotationAssertion(Annotation( "FMA:52736") Annotation( "FMA:TA") Annotation( ) "os sphenoidale") +AnnotationAssertion(Annotation( "FMA:52736") Annotation( "FMA:TA") Annotation( ) "os sphenoidale") AnnotationAssertion( "sphenoid") AnnotationAssertion( "sphenoidal bone") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Sphenoid_bone") "butterfly bone") -AnnotationAssertion(Annotation( "Wikipedia:Sphenoid_bone") Annotation( ) "os sphenoidale") +AnnotationAssertion(Annotation( "Wikipedia:Sphenoid_bone") Annotation( ) "os sphenoidale") AnnotationAssertion(Annotation( "Wikipedia:Sphenoid_bone") "os sphenoidum") AnnotationAssertion( "sphenoid complex") AnnotationAssertion( "UBERON:0001677") @@ -150397,7 +149967,7 @@ AnnotationAssertion(Annotation( "VHOG:0000800") AnnotationAssertion( "Wikipedia:Temporal_bone") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Temporal_bone") Annotation( ) "os temporale") +AnnotationAssertion(Annotation( "Wikipedia:Temporal_bone") Annotation( ) "os temporale") AnnotationAssertion( "UBERON:0001678") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150431,7 +150001,7 @@ AnnotationAssertion( "Wikipedia:Ethmoid_bone") AnnotationAssertion(Annotation( "FMA:52740") "ethmoid") AnnotationAssertion(Annotation( "MP:0000101") "ethmoidal bone") -AnnotationAssertion(Annotation( "FMA:52740") Annotation( "FMA:TA") Annotation( "Wikipedia:Ethmoid") Annotation( ) "os ethmoidale") +AnnotationAssertion(Annotation( "FMA:52740") Annotation( "FMA:TA") Annotation( "Wikipedia:Ethmoid") Annotation( ) "os ethmoidale") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001679") AnnotationAssertion( ) @@ -150469,7 +150039,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Hyoid_bone") "hyoid bone") AnnotationAssertion(Annotation( "Wikipedia:Hyoid_bone") "hyoideum") AnnotationAssertion(Annotation( "Wikipedia:Hyoid_bone") "lingual bone") -AnnotationAssertion(Annotation( "Wikipedia:Hyoid_bone") Annotation( ) "os hyoideum") +AnnotationAssertion(Annotation( "Wikipedia:Hyoid_bone") Annotation( ) "os hyoideum") AnnotationAssertion( "UBERON:0001685") AnnotationAssertion( ) AnnotationAssertion( ) @@ -150712,7 +150282,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "ZFA:0001291") "facial ganglion") AnnotationAssertion(Annotation( "Wikipedia:Geniculate_ganglion") "ganglion geniculi") -AnnotationAssertion(Annotation( "Wikipedia:Geniculate_ganglion") Annotation( ) "ganglion geniculi nervi facialis") +AnnotationAssertion(Annotation( "Wikipedia:Geniculate_ganglion") Annotation( ) "ganglion geniculi nervi facialis") AnnotationAssertion(Annotation( "MA:0001076") "geniculate ganglion") AnnotationAssertion(Annotation( "Wikipedia:Geniculate_ganglion") "internal genu") AnnotationAssertion( "UBERON:0001700") @@ -150864,8 +150434,8 @@ AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "olfactory chamber cavity") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002096") "cavitas nasalis") -AnnotationAssertion(Annotation( "BTO:0002096") Annotation( "Wikipedia:Nasal_cavity") Annotation( ) "cavitas nasi") -AnnotationAssertion(Annotation( "Wikipedia:Nasal_cavity") Annotation( ) "cavum nasi") +AnnotationAssertion(Annotation( "BTO:0002096") Annotation( "Wikipedia:Nasal_cavity") Annotation( ) "cavitas nasi") +AnnotationAssertion(Annotation( "Wikipedia:Nasal_cavity") Annotation( ) "cavum nasi") AnnotationAssertion( "nasal pit") AnnotationAssertion( "olfactory cavity") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "olfactory chamber") @@ -151268,7 +150838,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000662") "Nasenrachenraum") AnnotationAssertion(Annotation( "Wikipedia:Pharynx") "epipharynx") -AnnotationAssertion(Annotation( "Wikipedia:Nasopharynx") Annotation( ) "pars nasalis pharyngis") +AnnotationAssertion(Annotation( "Wikipedia:Nasopharynx") Annotation( ) "pars nasalis pharyngis") AnnotationAssertion( "UBERON:0001728") AnnotationAssertion( ) AnnotationAssertion( ) @@ -151294,7 +150864,7 @@ AnnotationAssertion( "lumen of pharynx") AnnotationAssertion( "pharyngeal cavity") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( ) "cavitas pharyngealis") +AnnotationAssertion(Annotation( ) "cavitas pharyngealis") AnnotationAssertion(Annotation( "BTO:0002097") "cavitas pharyngis") AnnotationAssertion( "UBERON:0001731") AnnotationAssertion(rdfs:label "cavity of pharynx") @@ -151314,7 +150884,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Waldeyer's_ring") AnnotationAssertion( "Waldeyer's ring") AnnotationAssertion( "Waldeyer's tonsillar ring") -AnnotationAssertion(Annotation( "FMA:55070") Annotation( "FMA:TA") Annotation( ) "anulus lymphoideus pharyngis") +AnnotationAssertion(Annotation( "FMA:55070") Annotation( "FMA:TA") Annotation( ) "anulus lymphoideus pharyngis") AnnotationAssertion( "oropharyngeal lymphoid tissue") AnnotationAssertion( "pharyngeal lymphatic ring") AnnotationAssertion( "pharyngeal lymphoid ring") @@ -151470,7 +151040,7 @@ AnnotationAssertion( "NCIT:C33781") AnnotationAssertion( "SCTID:176859009") AnnotationAssertion(Annotation( "ncithesaurus:Thyroid_Gland_Capsule") "UMLS:C0229575") -AnnotationAssertion(Annotation( "FMA:55513") Annotation( "FMA:TA") Annotation( ) "capsula fibrosa glandulae thyroideae") +AnnotationAssertion(Annotation( "FMA:55513") Annotation( "FMA:TA") Annotation( ) "capsula fibrosa glandulae thyroideae") AnnotationAssertion(Annotation( "FMA:55513") "fibrous capsule of thyroid gland") AnnotationAssertion( "thyroid capsule") AnnotationAssertion(Annotation( "MA:0002675") "thyroid gland capsule") @@ -151550,7 +151120,7 @@ AnnotationAssertion( "NCIT:C32905") AnnotationAssertion(Annotation( "ncithesaurus:Lacrimal_Apparatus") "UMLS:C0022903") AnnotationAssertion( "Wikipedia:Lacrimal_apparatus") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_apparatus") Annotation( ) "apparatus lacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_apparatus") Annotation( ) "apparatus lacrimalis") AnnotationAssertion(Annotation( "MGI:anna") "lacrymal system") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "lacrimal drainage system") @@ -151735,7 +151305,7 @@ AnnotationAssertion( "Wikipedia:Middle_ear") AnnotationAssertion( "XAO:0000191") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0002099") Annotation( "Wikipedia:Middle_ear") Annotation( ) "auris media") +AnnotationAssertion(Annotation( "BTO:0002099") Annotation( "Wikipedia:Middle_ear") Annotation( ) "auris media") AnnotationAssertion( "UBERON:0001756") AnnotationAssertion( ) AnnotationAssertion( ) @@ -151837,7 +151407,7 @@ AnnotationAssertion( "ZFA:0000453") AnnotationAssertion( "galen:VagusNerve") AnnotationAssertion(Annotation( "BIRNLEX:801") "neuronames:702") -AnnotationAssertion(Annotation( "FMA:5731") Annotation( "FMA:TA") Annotation( ) "nervus vagus [x]") +AnnotationAssertion(Annotation( "FMA:5731") Annotation( "FMA:TA") Annotation( ) "nervus vagus [x]") AnnotationAssertion( "tenth cranial nerve") AnnotationAssertion( "vagus") AnnotationAssertion(Annotation( "MA:0001106") "vagus X nerve") @@ -151847,7 +151417,7 @@ AnnotationAssertion( "CN-X") AnnotationAssertion( "cranial nerve X") AnnotationAssertion(Annotation( "NeuroNames:702") "nerve X") -AnnotationAssertion(Annotation( "BTO:0003472") Annotation( "Wikipedia:Vagus_nerve") Annotation( ) "nervus vagus") +AnnotationAssertion(Annotation( "BTO:0003472") Annotation( "Wikipedia:Vagus_nerve") Annotation( ) "nervus vagus") AnnotationAssertion(Annotation( "BTO:0003472") "pneuomgastric nerve") AnnotationAssertion( "vagal nerve") AnnotationAssertion(Annotation( "BAMS:10n") "vagus nerve or its root") @@ -151890,7 +151460,7 @@ AnnotationAssertion( "MA:0001598") "dental papilla") AnnotationAssertion(Annotation( "BTO:0001839") "dentinal papilla") AnnotationAssertion(Annotation( "ISBN:0073040584") Annotation( ) "dermal papilla") -AnnotationAssertion(Annotation( "Wikipedia:Dental_papilla") Annotation( ) "papilla dentis") +AnnotationAssertion(Annotation( "Wikipedia:Dental_papilla") Annotation( ) "papilla dentis") AnnotationAssertion(Annotation( "ZFA:0005140") "tooth mesenchyme") AnnotationAssertion( "UBERON:0001763") AnnotationAssertion( ) @@ -151917,7 +151487,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "lactiferous gland duct") AnnotationAssertion(Annotation( "MA:0000791") "mammary gland duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0002845") Annotation( "Wikipedia:Lactiferous_duct") Annotation( ) "ductus lactiferi") +AnnotationAssertion(Annotation( "BTO:0002845") Annotation( "Wikipedia:Lactiferous_duct") Annotation( ) "ductus lactiferi") AnnotationAssertion(Annotation( "Wikipedia:Lactiferous_duct") "galactophorous duct") AnnotationAssertion(Annotation( "BTO:0002845") "galactophorous tubule") AnnotationAssertion(Annotation( "BTO:0002845") "lactiferous tubule") @@ -151958,7 +151528,7 @@ AnnotationAssertion( "eye anterior chamber") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002084") "camera anterior bulbi") -AnnotationAssertion(Annotation( "Wikipedia:Anterior_chamber_of_eyeball") Annotation( ) "camera anterior bulbi oculi") +AnnotationAssertion(Annotation( "Wikipedia:Anterior_chamber_of_eyeball") Annotation( ) "camera anterior bulbi oculi") AnnotationAssertion(Annotation( "BTO:0002084") "camera oculi anterior") AnnotationAssertion( "UBERON:0001766") AnnotationAssertion( ) @@ -151990,7 +151560,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Uvea") "pars iridica retinae") AnnotationAssertion(Annotation( "Wikipedia:Uvea") "tunica vasculatis oculi") -AnnotationAssertion(Annotation( "Wikipedia:Uvea") Annotation( ) "tunica vasculosa bulbi") +AnnotationAssertion(Annotation( "Wikipedia:Uvea") Annotation( ) "tunica vasculosa bulbi") AnnotationAssertion(Annotation( "FMA:58103") "vascular layer of eyeball") AnnotationAssertion( "UBERON:0001768") AnnotationAssertion( ) @@ -152057,7 +151627,7 @@ AnnotationAssertion( "ncithesaurus:Lacrimal_Canaliculus") "UMLS:C0459631") AnnotationAssertion( "Wikipedia:Lacrimal_canaliculi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_canaliculi") Annotation( ) "canaliculus lacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_canaliculi") Annotation( ) "canaliculus lacrimalis") AnnotationAssertion(Annotation( "ISBN:1587341026") Annotation( "https://www.bartleby.com/lit-hub/anatomy-of-the-human-body/fig-896/") "lacrimal duct") AnnotationAssertion( "UBERON:0001770") AnnotationAssertion( ) @@ -152094,13 +151664,13 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "cornea epithelium") AnnotationAssertion(Annotation( "OBOL:automatic") "epithelial tissue of cornea") AnnotationAssertion( "epithelium anterius (cornea)") -AnnotationAssertion(Annotation( "FMA:58263") Annotation( "FMA:TA") Annotation( ) "epithelium anterius corneae") +AnnotationAssertion(Annotation( "FMA:58263") Annotation( "FMA:TA") Annotation( ) "epithelium anterius corneae") AnnotationAssertion( "epithelium corneæ anterior layer") AnnotationAssertion( "epithelium of cornea") AnnotationAssertion( "external epithelium of cornea") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000287") "anterior endothelium of cornea") -AnnotationAssertion(Annotation( "Wikipedia:Corneal_epithelium") Annotation( ) "e. anterius corneae") +AnnotationAssertion(Annotation( "Wikipedia:Corneal_epithelium") Annotation( ) "e. anterius corneae") AnnotationAssertion(Annotation( "BTO:0000287") "endothelium anterius corneae") AnnotationAssertion(Annotation( "BTO:0000287") "endothelium camerae anterioris bulbi") AnnotationAssertion(Annotation( "BTO:0000287") "endothelium corneale") @@ -152214,7 +151784,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion( "anterior uvea") AnnotationAssertion(Annotation( "VHOG:0000102") Annotation( ) "ciliary bodies") -AnnotationAssertion(Annotation( "Wikipedia:Ciliary_body") Annotation( ) "corpus ciliare") +AnnotationAssertion(Annotation( "Wikipedia:Ciliary_body") Annotation( ) "corpus ciliare") AnnotationAssertion( "UBERON:0001775") AnnotationAssertion( ) AnnotationAssertion( ) @@ -152258,7 +151828,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Uvea#Regions") "posterior uvea") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001829") "chorioid") -AnnotationAssertion(Annotation( "Wikipedia:Choroid") Annotation( ) "choroidea") +AnnotationAssertion(Annotation( "Wikipedia:Choroid") Annotation( ) "choroidea") AnnotationAssertion(Annotation( "ZFA:0005229") "optic choroid") AnnotationAssertion( "UBERON:0001776") AnnotationAssertion( ) @@ -152299,7 +151869,7 @@ AnnotationAssertion( "ZFA:0001685") AnnotationAssertion(Annotation( "MA:0001245") "corneal stroma") AnnotationAssertion( "stroma of cornea") -AnnotationAssertion(Annotation( "FMA:58306") Annotation( "FMA:TA") Annotation( ) "substantia propria corneae") +AnnotationAssertion(Annotation( "FMA:58306") Annotation( "FMA:TA") Annotation( ) "substantia propria corneae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001777") AnnotationAssertion( ) @@ -152392,7 +151962,7 @@ AnnotationAssertion( "OBOL:automatic") "spine nerve") AnnotationAssertion(Annotation( "OBOL:automatic") "vertebral column nerve") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Spinal_nerve") Annotation( ) "nervi spinales") +AnnotationAssertion(Annotation( "Wikipedia:Spinal_nerve") Annotation( ) "nervi spinales") AnnotationAssertion(Annotation( "BAMS:spin") Annotation( ) "spinal nerves") AnnotationAssertion( "UBERON:0001780") AnnotationAssertion( ) @@ -152460,16 +152030,16 @@ AnnotationAssertion( "MP:0005201") Annotation( "Wikipedia:Retinal_pigment_epithelium") "retinal pigment epithelium") AnnotationAssertion(Annotation( "ZFA:0000144") "retinal pigmented epithelium") AnnotationAssertion( "stratum pigmentosum (retina)") -AnnotationAssertion(Annotation( "FMA:58627") Annotation( "FMA:TA") Annotation( ) "stratum pigmentosum retinae") +AnnotationAssertion(Annotation( "FMA:58627") Annotation( "FMA:TA") Annotation( ) "stratum pigmentosum retinae") AnnotationAssertion( "uberon") AnnotationAssertion( "PRE") AnnotationAssertion( "RPE") AnnotationAssertion(Annotation( "BTO:0001177") "epithelium, retinal pigment") -AnnotationAssertion(Annotation( "Wikipedia:Retinal_pigment_epithelium") Annotation( ) "p. pigmentosa retinae") +AnnotationAssertion(Annotation( "Wikipedia:Retinal_pigment_epithelium") Annotation( ) "p. pigmentosa retinae") AnnotationAssertion( "pigmented epithelium") AnnotationAssertion( "pigmented retina") AnnotationAssertion(Annotation( "VHOG:0000536") "retinal pigment layer") -AnnotationAssertion(Annotation( "Wikipedia:Retinal_pigment_epithelium") Annotation( ) "stratum pigmentosa retinae") +AnnotationAssertion(Annotation( "Wikipedia:Retinal_pigment_epithelium") Annotation( ) "stratum pigmentosa retinae") AnnotationAssertion( "UBERON:0001782") AnnotationAssertion( ) AnnotationAssertion( ) @@ -152517,7 +152087,7 @@ AnnotationAssertion( "cranial neural tree organ") AnnotationAssertion( "uberon") AnnotationAssertion( "cranial nerves") -AnnotationAssertion(Annotation( "Wikipedia:Cranial_nerve") Annotation( ) "nervus cranialis") +AnnotationAssertion(Annotation( "Wikipedia:Cranial_nerve") Annotation( ) "nervus cranialis") AnnotationAssertion( "UBERON:0001785") AnnotationAssertion( ) AnnotationAssertion( ) @@ -152589,7 +152159,7 @@ AnnotationAssertion( "retina photoreceptor layer") AnnotationAssertion(Annotation( "ZFA:0000143") "retinal photoreceptor layer") AnnotationAssertion( "stratum segmentorum externorum et internorum (retina)") -AnnotationAssertion(Annotation( "FMA:58680") Annotation( "FMA:TA") Annotation( ) "stratum segmentorum externorum et internorum retinae") +AnnotationAssertion(Annotation( "FMA:58680") Annotation( "FMA:TA") Annotation( ) "stratum segmentorum externorum et internorum retinae") AnnotationAssertion( "uberon") AnnotationAssertion( "layer of rods and cones") AnnotationAssertion(Annotation( "ZFA:0000143") Annotation( ) "retinal photoreceptor layers") @@ -152625,7 +152195,7 @@ AnnotationAssertion( "retina external limiting lamina") AnnotationAssertion(Annotation( "MP:0010236") "retina outer limiting membrane") AnnotationAssertion( "stratum limitans externum (retina)") -AnnotationAssertion(Annotation( "FMA:58683") Annotation( "FMA:TA") Annotation( ) "stratum limitans externum retinae") +AnnotationAssertion(Annotation( "FMA:58683") Annotation( "FMA:TA") Annotation( ) "stratum limitans externum retinae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109") Annotation( ) "BRB") AnnotationAssertion(Annotation( "https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109") "blood retina barrier") @@ -152661,7 +152231,7 @@ AnnotationAssertion(Annotation( "retina outer nuclear layer") AnnotationAssertion( "retinal outer nuclear layer") AnnotationAssertion( "stratum nucleare externum (retina)") -AnnotationAssertion(Annotation( "FMA:58684") Annotation( "FMA:TA") Annotation( ) "stratum nucleare externum retinae") +AnnotationAssertion(Annotation( "FMA:58684") Annotation( "FMA:TA") Annotation( ) "stratum nucleare externum retinae") AnnotationAssertion( "ONL") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0005600") "external nuclear layer") @@ -152702,7 +152272,7 @@ AnnotationAssertion(Annotation( "retina outer plexiform layer") AnnotationAssertion( "retinal outer plexiform layer") AnnotationAssertion( "stratum plexiforme externum") -AnnotationAssertion(Annotation( "FMA:58685") Annotation( "FMA:TA") Annotation( ) "stratum plexiforme externum retinae") +AnnotationAssertion(Annotation( "FMA:58685") Annotation( "FMA:TA") Annotation( ) "stratum plexiforme externum retinae") AnnotationAssertion(Annotation( ) "OPL") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:Ropl") "retina, outer plexiform layer") @@ -152744,7 +152314,7 @@ AnnotationAssertion(Annotation( "retina inner nuclear layer") AnnotationAssertion( "retinal inner nuclear layer") AnnotationAssertion( "stratum nucleare internum") -AnnotationAssertion(Annotation( "FMA:58686") Annotation( "FMA:TA") Annotation( ) "stratum nucleare internum retinae") +AnnotationAssertion(Annotation( "FMA:58686") Annotation( "FMA:TA") Annotation( ) "stratum nucleare internum retinae") AnnotationAssertion( "INL") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NLX:93816") "layer of inner granules") @@ -152796,7 +152366,7 @@ AnnotationAssertion(Annotation( "FMA:58687") "stratum ganglionicum (retina)") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:Rgcl") "retina, ganglion cell layer") -AnnotationAssertion(Annotation( "Wikipedia:Ganglion_cell_layer") Annotation( ) "stratum ganglionicum retinae") +AnnotationAssertion(Annotation( "Wikipedia:Ganglion_cell_layer") Annotation( ) "stratum ganglionicum retinae") AnnotationAssertion( "UBERON:0001792") AnnotationAssertion( ) AnnotationAssertion( ) @@ -152831,13 +152401,13 @@ AnnotationAssertion( "DMBA:15652") "optic fiber layer") AnnotationAssertion( "retina nerve fiber layer") AnnotationAssertion( "stratum neurofibrarum (retina)") -AnnotationAssertion(Annotation( "FMA:58688") Annotation( "FMA:TA") Annotation( ) "stratum neurofibrarum retinae") +AnnotationAssertion(Annotation( "FMA:58688") Annotation( "FMA:TA") Annotation( ) "stratum neurofibrarum retinae") AnnotationAssertion( "stratum opticum of retina") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:18591") "neural retina nerve fibre layer") AnnotationAssertion(Annotation( "VHOG:0001169") "optic fiber layer") AnnotationAssertion(Annotation( "TAO:0002212") Annotation( ) "optic fiber layers") -AnnotationAssertion(Annotation( "Wikipedia:Nerve_fiber_layer") Annotation( ) "stratum neurofibrum retinae") +AnnotationAssertion(Annotation( "Wikipedia:Nerve_fiber_layer") Annotation( ) "stratum neurofibrum retinae") AnnotationAssertion( "UBERON:0001793") AnnotationAssertion( ) AnnotationAssertion( ) @@ -152871,7 +152441,7 @@ AnnotationAssertion( "internal limiting membrane of retina") AnnotationAssertion(Annotation( "MP:0010235") "retina inner limiting membrane") AnnotationAssertion( "retina internal limiting lamina") -AnnotationAssertion(Annotation( "FMA:58689") Annotation( "FMA:TA") Annotation( ) "stratum limitans internum retinae") +AnnotationAssertion(Annotation( "FMA:58689") Annotation( "FMA:TA") Annotation( ) "stratum limitans internum retinae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0001029") Annotation( ) "inner limiting membranes") AnnotationAssertion( "UBERON:0001794") @@ -152917,7 +152487,7 @@ AnnotationAssertion(Annotation( "BAMS:Ripl") "retina, inner plexiform layer") AnnotationAssertion(Annotation( "NLXANAT:1005032") "retinal internal plexiform layer") AnnotationAssertion(Annotation( "BTO:0003175") "stratum plexifome internum") -AnnotationAssertion(Annotation( "Wikipedia:Inner_plexiform_layer") Annotation( ) "stratum plexiforme internum retinae") +AnnotationAssertion(Annotation( "Wikipedia:Inner_plexiform_layer") Annotation( ) "stratum plexiforme internum retinae") AnnotationAssertion( "UBERON:0001795") AnnotationAssertion( ) AnnotationAssertion( ) @@ -152952,7 +152522,7 @@ AnnotationAssertion( "ZFA:0005564") AnnotationAssertion( "aqueous humor") AnnotationAssertion(Annotation( "EHDAA2:0000139") "aqueous humour") -AnnotationAssertion(Annotation( "FMA:58819") Annotation( "FMA:TA") Annotation( ) "humor aquosus") +AnnotationAssertion(Annotation( "FMA:58819") Annotation( "FMA:TA") Annotation( ) "humor aquosus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001796") AnnotationAssertion( ) @@ -152976,13 +152546,14 @@ AnnotationAssertion( "EV:0100344") AnnotationAssertion( "FMA:58822") AnnotationAssertion( "MA:0001286") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D014822") AnnotationAssertion( "NCIT:C13323") AnnotationAssertion(Annotation( "ncithesaurus:Vitreous_Humor") "UMLS:C0229096") AnnotationAssertion( "VHOG:0000795") AnnotationAssertion( "Wikipedia:Vitreous_humour") AnnotationAssertion( "ZFA:0005561") AnnotationAssertion( "humor vitreous") -AnnotationAssertion(Annotation( "FMA:58822") Annotation( "FMA:TA") Annotation( ) "humor vitreus") +AnnotationAssertion(Annotation( "FMA:58822") Annotation( "FMA:TA") Annotation( ) "humor vitreus") AnnotationAssertion(Annotation( "ZFA:0005561") "vitreous") AnnotationAssertion(Annotation( "FMA:58822") "whole portion of vitreous humor") AnnotationAssertion( "uberon") @@ -153035,7 +152606,7 @@ AnnotationAssertion( "ncithesaurus:Vitreous_Chamber") "UMLS:C0229095") AnnotationAssertion( "Wikipedia:Vitreous_chamber") AnnotationAssertion(Annotation( "FMA:58848") "camera postrema") -AnnotationAssertion(Annotation( "FMA:58848") Annotation( "FMA:TA") Annotation( ) "camera postrema bulbi oculi") +AnnotationAssertion(Annotation( "FMA:58848") Annotation( "FMA:TA") Annotation( ) "camera postrema bulbi oculi") AnnotationAssertion(Annotation( "FMA:58848") "camera vitrea") AnnotationAssertion(Annotation( "FMA:58848") "camera vitrea bulbi") AnnotationAssertion(Annotation( "FMA:58848") "postremal chamber") @@ -153060,7 +152631,7 @@ AnnotationAssertion( "MESH:D017950") AnnotationAssertion( "NCIT:C13060") AnnotationAssertion(Annotation( "ncithesaurus:Sensory_Ganglion") "UMLS:C0206429") -AnnotationAssertion(Annotation( ) "ganglion sensorium") +AnnotationAssertion(Annotation( ) "ganglion sensorium") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001800") AnnotationAssertion( ) @@ -153088,7 +152659,7 @@ AnnotationAssertion( "eye anterior segment") AnnotationAssertion( "segmentum anterius (bulbus oculi)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Anterior_segment_of_eyeball") Annotation( ) "segmentum anterius bulbi oculi") +AnnotationAssertion(Annotation( "Wikipedia:Anterior_segment_of_eyeball") Annotation( ) "segmentum anterius bulbi oculi") AnnotationAssertion( "UBERON:0001801") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153118,7 +152689,7 @@ AnnotationAssertion( "posterior segment of the eye") AnnotationAssertion( "segmentum posterius (bulbus oculi)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Posterior_segment_of_eyeball") Annotation( ) "segmentum posterius bulbi oculi") +AnnotationAssertion(Annotation( "Wikipedia:Posterior_segment_of_eyeball") Annotation( ) "segmentum posterius bulbi oculi") AnnotationAssertion( "UBERON:0001802") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153146,7 +152717,7 @@ AnnotationAssertion( "ZFA:0001326") AnnotationAssertion(Annotation( "OBOL:automatic") "epithelial tissue of eye lens") AnnotationAssertion(Annotation( "OBOL:automatic") "epithelial tissue of lens") -AnnotationAssertion(Annotation( "FMA:58871") Annotation( "FMA:TA") Annotation( ) "epithelium lentis") +AnnotationAssertion(Annotation( "FMA:58871") Annotation( "FMA:TA") Annotation( ) "epithelium lentis") AnnotationAssertion(Annotation( "OBOL:automatic") "epithelium of eye lens") AnnotationAssertion(Annotation( "OBOL:automatic") "eye lens epithelial tissue") AnnotationAssertion(Annotation( "OBOL:automatic") "eye lens epithelium") @@ -153180,7 +152751,7 @@ AnnotationAssertion(Annotation( "VHOG:0000550") AnnotationAssertion( "Wikipedia:Lens_(anatomy)#Lens_capsule") AnnotationAssertion( "ZFA:0005574") -AnnotationAssertion(Annotation( ) "capsula lentis") +AnnotationAssertion(Annotation( ) "capsula lentis") AnnotationAssertion( "lens capsule") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001804") @@ -153215,7 +152786,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "ganglion of visceral nervous system") AnnotationAssertion(Annotation( "OBOL:automatic") "visceral nervous system ganglion") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Autonomic_ganglion") Annotation( ) "ganglion autonomicum") +AnnotationAssertion(Annotation( "Wikipedia:Autonomic_ganglion") Annotation( ) "ganglion autonomicum") AnnotationAssertion( "UBERON:0001805") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153235,7 +152806,7 @@ AnnotationAssertion( "EMAPA:17157") AnnotationAssertion( "FMA:5890") AnnotationAssertion( "MA:0000226") -AnnotationAssertion( "MESH:D005728") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005728") AnnotationAssertion( "NCIT:C12467") AnnotationAssertion( "SCTID:362485003") AnnotationAssertion(Annotation( "ncithesaurus:Sympathetic_Ganglion") "UMLS:C0017071") @@ -153246,7 +152817,7 @@ AnnotationAssertion( "OBOL:automatic") "sympathetic nervous system ganglion") AnnotationAssertion(Annotation( "OBOL:automatic") "sympathetic part of autonomic division of nervous system ganglion") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0001333") Annotation( "Wikipedia:Sympathetic_ganglion") Annotation( ) "ganglion sympathicum") +AnnotationAssertion(Annotation( "BTO:0001333") Annotation( "Wikipedia:Sympathetic_ganglion") Annotation( ) "ganglion sympathicum") AnnotationAssertion( "UBERON:0001806") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153273,12 +152844,12 @@ AnnotationAssertion( "Wikipedia:Paravertebral_ganglion") AnnotationAssertion( "ZFA:0001556") AnnotationAssertion( "ganglion of sympathetic trunk") -AnnotationAssertion(Annotation( ) "ganglion trunci sympathetici") -AnnotationAssertion(Annotation( "FMA:5891") Annotation( "FMA:TA") Annotation( ) "ganglion trunci sympathici") +AnnotationAssertion(Annotation( ) "ganglion trunci sympathetici") +AnnotationAssertion(Annotation( "FMA:5891") Annotation( "FMA:TA") Annotation( ) "ganglion trunci sympathici") AnnotationAssertion( "sympathetic chain ganglion") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Paravertebral_ganglia") "ganglia of sympathetic trunk") -AnnotationAssertion(Annotation( "Wikipedia:Paravertebral_ganglia") Annotation( ) "ganglia trunci sympathici") +AnnotationAssertion(Annotation( "Wikipedia:Paravertebral_ganglia") Annotation( ) "ganglia trunci sympathici") AnnotationAssertion(Annotation( "FMA:80128") Annotation( ) "paravertebral ganglia") AnnotationAssertion(Annotation( "Wikipedia:Paravertebral_ganglia") "paravertebral ganglion") AnnotationAssertion(Annotation( "Wikipedia:Paravertebral_ganglia") Annotation( ) "sympathetic chain ganglia") @@ -153300,14 +152871,14 @@ AnnotationAssertion( "EMAPA:32813") AnnotationAssertion( "FMA:5894") AnnotationAssertion( "MA:0002469") -AnnotationAssertion( "MESH:D005726") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005726") AnnotationAssertion( "NCIT:C52557") AnnotationAssertion( "NLXANAT:100303") AnnotationAssertion( "SCTID:279284004") AnnotationAssertion(Annotation( "ncithesaurus:Parasympathetic_Ganglion") "UMLS:C0017069") AnnotationAssertion( "Wikipedia:Parasympathetic_ganglion") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0001256") Annotation( "Wikipedia:Parasympathetic_ganglion") Annotation( ) "ganglion parasympathicum") +AnnotationAssertion(Annotation( "BTO:0001256") Annotation( "Wikipedia:Parasympathetic_ganglion") Annotation( ) "ganglion parasympathicum") AnnotationAssertion( "UBERON:0001808") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153321,7 +152892,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (enteric ganglion) -AnnotationAssertion(Annotation( "Wikipedia:Enteric_ganglia") ".") AnnotationAssertion( "EMAPA:35312") AnnotationAssertion( "FMA:5896") AnnotationAssertion( "MA:0001144") @@ -153386,7 +152956,7 @@ AnnotationAssertion( "XAO:0000182") AnnotationAssertion(Annotation( "XAO:0000182") Annotation( ) "conjunctivae") AnnotationAssertion(Annotation( "XAO:0000182") Annotation( ) "conjunctivas") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica conjunctiva") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica conjunctiva") AnnotationAssertion(Annotation( "FMA:59011") "wall of conjunctival sac") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001811") @@ -153416,7 +152986,7 @@ AnnotationAssertion( "SCTID:42280003") AnnotationAssertion(Annotation( "ncithesaurus:Spinal_Nerve_Plexus") "UMLS:C0228603") AnnotationAssertion( "VHOG:0000925") -AnnotationAssertion(Annotation( "FMA:5903") Annotation( "FMA:TA") Annotation( ) "plexus nervorum spinalium") +AnnotationAssertion(Annotation( "FMA:5903") Annotation( "FMA:TA") Annotation( ) "plexus nervorum spinalium") AnnotationAssertion(Annotation( "FMA:5903") "plexus of spinal nerves") AnnotationAssertion(Annotation( "FMA:5903") "somatic nerve plexus") AnnotationAssertion(Annotation( "FMA:5903") "spinal nerve plexus") @@ -153446,7 +153016,7 @@ AnnotationAssertion( "Wikipedia:Brachial_plexus") AnnotationAssertion(Annotation( "MA:0001180") "brachial plexus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Brachial_plexus") Annotation( ) "plexus brachialis") +AnnotationAssertion(Annotation( "Wikipedia:Brachial_plexus") Annotation( ) "plexus brachialis") AnnotationAssertion( "UBERON:0001814") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153473,9 +153043,9 @@ AnnotationAssertion(Annotation( "VHOG:0000926") AnnotationAssertion( "Wikipedia:Lumbosacral_plexus") AnnotationAssertion( "lumbosacral plexus") -AnnotationAssertion(Annotation( "FMA:5907") Annotation( "FMA:TA") Annotation( ) "plexus lumbosacralis") +AnnotationAssertion(Annotation( "FMA:5907") Annotation( "FMA:TA") Annotation( ) "plexus lumbosacralis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lumbosacral_plexus") Annotation( ) "plexus lumbosacralis") +AnnotationAssertion(Annotation( "Wikipedia:Lumbosacral_plexus") Annotation( ) "plexus lumbosacralis") AnnotationAssertion( "UBERON:0001815") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lumbosacral nerve plexus") @@ -153491,9 +153061,9 @@ AnnotationAssertion( "MA:0000221") AnnotationAssertion( "SCTID:362482000") AnnotationAssertion( "autonomic plexus") -AnnotationAssertion(Annotation( "FMA:5910") Annotation( "FMA:TA") Annotation( ) "plexus autonomicus") -AnnotationAssertion(Annotation( "FMA:5910") Annotation( "FMA:TA") Annotation( ) "plexus nervosus visceralis") -AnnotationAssertion(Annotation( "FMA:5910") Annotation( "FMA:TA") Annotation( ) "plexus visceralis") +AnnotationAssertion(Annotation( "FMA:5910") Annotation( "FMA:TA") Annotation( ) "plexus autonomicus") +AnnotationAssertion(Annotation( "FMA:5910") Annotation( "FMA:TA") Annotation( ) "plexus nervosus visceralis") +AnnotationAssertion(Annotation( "FMA:5910") Annotation( "FMA:TA") Annotation( ) "plexus visceralis") AnnotationAssertion( "visceral nerve plexus") AnnotationAssertion( "visceral plexus") AnnotationAssertion( "uberon") @@ -153523,7 +153093,7 @@ AnnotationAssertion(Annotation( "VHOG:0001476") AnnotationAssertion( "Wikipedia:Lacrimal_gland") AnnotationAssertion( "Wikipedia:Preorbital_gland") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_gland") Annotation( ) "glandula lacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_gland") Annotation( ) "glandula lacrimalis") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "lacrimal-preorbital gland") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NCBITaxon:91561") Annotation( "Wikipedia:Preorbital_gland") Annotation( ) "glandula praeorbitalis") @@ -153600,7 +153170,7 @@ AnnotationAssertion(Annotation( "VHOG:0001468") AnnotationAssertion( "Wikipedia:Sebaceous_gland") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sebaceous_gland") Annotation( ) "glandula sebacea") +AnnotationAssertion(Annotation( "Wikipedia:Sebaceous_gland") Annotation( ) "glandula sebacea") AnnotationAssertion(Annotation( "BTO:0001980") "glandula sebaceae") AnnotationAssertion(Annotation( "BTO:0001980") "sebaceous follicle") AnnotationAssertion( "UBERON:0001821") @@ -153625,7 +153195,7 @@ AnnotationAssertion( "MA:th") "EMAPA:37681") AnnotationAssertion( "FMA:59502") AnnotationAssertion( "MA:0001883") -AnnotationAssertion( "MESH:D055171") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D055171") AnnotationAssertion( "NCIT:C49593") AnnotationAssertion( "SCTID:278941001") AnnotationAssertion(Annotation( "ncithesaurus:Nasal_Cartilage") "UMLS:C0225415") @@ -153660,7 +153230,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "mucosa of organ of larynx") AnnotationAssertion( "mucous membrane of larynx") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of larynx") -AnnotationAssertion(Annotation( "FMA:59662") Annotation( "FMA:TA") Annotation( ) "tunica mucosa laryngis") +AnnotationAssertion(Annotation( "FMA:59662") Annotation( "FMA:TA") Annotation( ) "tunica mucosa laryngis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:18334") "laryngeal mucous membrane") AnnotationAssertion( "UBERON:0001824") @@ -153682,7 +153252,7 @@ AnnotationAssertion( "FMA:59684") "mucosa of nose") AnnotationAssertion(Annotation( "FMA:59684") "mucous membrane of nose") AnnotationAssertion( "tunica mucosa nasalis") -AnnotationAssertion(Annotation( "FMA:59684") Annotation( "FMA:TA") Annotation( ) "tunica mucosa nasi") +AnnotationAssertion(Annotation( "FMA:59684") Annotation( "FMA:TA") Annotation( ) "tunica mucosa nasi") AnnotationAssertion( "uberon") AnnotationAssertion( "nasal mucosa") AnnotationAssertion( "UBERON:0001826") @@ -153780,7 +153350,7 @@ AnnotationAssertion( "ZFA:0007006") AnnotationAssertion( "galen:Lip") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lip") Annotation( ) "labia oris") +AnnotationAssertion(Annotation( "Wikipedia:Lip") Annotation( ) "labia oris") AnnotationAssertion( "lips") AnnotationAssertion( "UBERON:0001833") AnnotationAssertion( ) @@ -153810,7 +153380,7 @@ AnnotationAssertion( "ZFA:0005226") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "upper jaw lip") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Upper_lip") Annotation( ) "labium superius oris") +AnnotationAssertion(Annotation( "Wikipedia:Upper_lip") Annotation( ) "labium superius oris") AnnotationAssertion( "UBERON:0001834") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153837,7 +153407,7 @@ AnnotationAssertion( "ZFA:0005225") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "lower jaw lip") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lower_lip") Annotation( ) "labium inferius oris") +AnnotationAssertion(Annotation( "Wikipedia:Lower_lip") Annotation( ) "labium inferius oris") AnnotationAssertion( "UBERON:0001835") AnnotationAssertion( ) AnnotationAssertion( ) @@ -153867,9 +153437,9 @@ AnnotationAssertion( "galen:Saliva") AnnotationAssertion(Annotation( "FMA:59862") "salivary gland secretion") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Saliva") Annotation( ) "sailva normalis") -AnnotationAssertion(Annotation( "Wikipedia:Saliva") Annotation( ) "saliva atomaris") -AnnotationAssertion(Annotation( "Wikipedia:Saliva") Annotation( ) "saliva molecularis") +AnnotationAssertion(Annotation( "Wikipedia:Saliva") Annotation( ) "sailva normalis") +AnnotationAssertion(Annotation( "Wikipedia:Saliva") Annotation( ) "saliva atomaris") +AnnotationAssertion(Annotation( "Wikipedia:Saliva") Annotation( ) "saliva molecularis") AnnotationAssertion( "UBERON:0001836") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "saliva") @@ -153920,7 +153490,7 @@ AnnotationAssertion( "XAO:0000193") AnnotationAssertion( "osseous labyrinth") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Bony_labyrinth") Annotation( ) "labyrinthus osseus") +AnnotationAssertion(Annotation( "Wikipedia:Bony_labyrinth") Annotation( ) "labyrinthus osseus") AnnotationAssertion( "osseus labyrinth") AnnotationAssertion( "UBERON:0001839") AnnotationAssertion( ) @@ -153959,7 +153529,7 @@ AnnotationAssertion( "ZFA:0000431") AnnotationAssertion(Annotation( "TAO:0000431") Annotation( ) "semicircular canals") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Semicircular_canal") Annotation( ) "canalis semicircularis") +AnnotationAssertion(Annotation( "Wikipedia:Semicircular_canal") Annotation( ) "canalis semicircularis") AnnotationAssertion(Annotation( "BTO:0003383") Annotation( "FMA:71880") Annotation( "FMA:TA") Annotation( ) "ductus semicirculares") AnnotationAssertion(Annotation( "TAO:0000431") "scc") AnnotationAssertion(Annotation( "XAO:0000198") Annotation( ) "semicircular ducts") @@ -154039,7 +153609,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Perilymph") AnnotationAssertion( "ZFA:0005413") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Perilymph") Annotation( ) "liquor cotunnii") +AnnotationAssertion(Annotation( "Wikipedia:Perilymph") Annotation( ) "liquor cotunnii") AnnotationAssertion(Annotation( "Wikipedia:Perilymph") "perilympha") AnnotationAssertion( "UBERON:0001845") AnnotationAssertion( ) @@ -154133,7 +153703,7 @@ AnnotationAssertion(Annotation( "VHOG:0000729") AnnotationAssertion( "Wikipedia:Membranous_labyrinth") AnnotationAssertion( "XAO:0000194") -AnnotationAssertion(Annotation( "Wikipedia:Membranous_labyrinth") Annotation( ) "labyrinthus membranaceus") +AnnotationAssertion(Annotation( "Wikipedia:Membranous_labyrinth") Annotation( ) "labyrinthus membranaceus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001849") AnnotationAssertion( ) @@ -154252,7 +153822,7 @@ AnnotationAssertion( "ZFA:0000428") "sacculus") AnnotationAssertion( "sacculus (labyrinthus vestibularis)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Saccule") Annotation( ) "sacculus") +AnnotationAssertion(Annotation( "Wikipedia:Saccule") Annotation( ) "sacculus") AnnotationAssertion( "UBERON:0001854") AnnotationAssertion( ) AnnotationAssertion( ) @@ -154292,7 +153862,7 @@ AnnotationAssertion( "BIRNLEX:2562") "scala medias") AnnotationAssertion( "uberon") AnnotationAssertion( "cochlear aqueduct") -AnnotationAssertion(Annotation( "BTO:0001692") Annotation( "Wikipedia:Cochlear_duct") Annotation( ) "ductus cochlearis") +AnnotationAssertion(Annotation( "BTO:0001692") Annotation( "Wikipedia:Cochlear_duct") Annotation( ) "ductus cochlearis") AnnotationAssertion(Annotation( "BTO:0001692") "membranous cochlea") AnnotationAssertion(Annotation( "Wikipedia:Cochlear_duct") "scala media") AnnotationAssertion(Annotation( "BTO:0001692") "scala of Loewenberg") @@ -154312,7 +153882,7 @@ AnnotationAssertion(Annotation( "EMAPA:32830") AnnotationAssertion( "FMA:61122") AnnotationAssertion( "MA:0000251") -AnnotationAssertion( "MESH:D054776") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D054776") AnnotationAssertion( "NCIT:C33528") AnnotationAssertion( "SCTID:279833009") AnnotationAssertion(Annotation( "ncithesaurus:Semicircular_Duct") "UMLS:C1323109") @@ -154338,7 +153908,7 @@ AnnotationAssertion( "EMAPA:17815") AnnotationAssertion( "FMA:61255") AnnotationAssertion( "MA:0000245") -AnnotationAssertion( "MESH:D014722") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D014722") AnnotationAssertion( "NCIT:C33871") AnnotationAssertion( "SCTID:181188003") AnnotationAssertion(Annotation( "ncithesaurus:Vestibular_Labyrinth") "UMLS:C0042606") @@ -154449,10 +154019,10 @@ AnnotationAssertion( "MA:0000133") Annotation( "VHOG:0001639") Annotation( "https://github.com/obophenotype/uberon/issues/1208") "cerebrum") AnnotationAssertion(Annotation( "VHOG:0001639") "hemisphere") AnnotationAssertion(Annotation( "BAMS:HEM") "hemispheric regions") -AnnotationAssertion(Annotation( "Wikipedia:Cerebral_hemisphere") Annotation( ) "hemispherium cerebri") +AnnotationAssertion(Annotation( "Wikipedia:Cerebral_hemisphere") Annotation( ) "hemispherium cerebri") AnnotationAssertion(Annotation( "NeuroNames:241") "medial amygdalar nucleus") -AnnotationAssertion(Annotation( "NeuroNames:241") Annotation( ) "nucleus amygdaloideus medialis") -AnnotationAssertion(Annotation( "NeuroNames:241") Annotation( ) "nucleus medialis amygdalae") +AnnotationAssertion(Annotation( "NeuroNames:241") Annotation( ) "nucleus amygdaloideus medialis") +AnnotationAssertion(Annotation( "NeuroNames:241") Annotation( ) "nucleus medialis amygdalae") AnnotationAssertion( "UBERON:0001869") AnnotationAssertion( ) AnnotationAssertion( ) @@ -154476,6 +154046,7 @@ AnnotationAssertion( "FMA:242199") AnnotationAssertion( "GAID:674") AnnotationAssertion( "MA:0000905") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005625") AnnotationAssertion( "NLXANAT:20090601") AnnotationAssertion( "Wikipedia:Frontal_lobe") AnnotationAssertion(Annotation( "FMA:242199") "cortex of frontal lobe") @@ -154517,7 +154088,7 @@ AnnotationAssertion(Annotation( "BIRNLEX:1160") "UMLS:C1268978") AnnotationAssertion( "Wikipedia:Temporal_lobe") AnnotationAssertion(Annotation( "BIRNLEX:1160") "neuronames:125") -AnnotationAssertion(Annotation( "Wikipedia:Temporal_lobe") Annotation( ) "lobus temporalis") +AnnotationAssertion(Annotation( "Wikipedia:Temporal_lobe") Annotation( ) "lobus temporalis") AnnotationAssertion( "temporal cortex") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001871") @@ -154553,9 +154124,9 @@ AnnotationAssertion( "BIRNLEX:1148") Annotation( "ncithesaurus:Parietal_Lobe_of_the_Brain") "UMLS:C0030560") AnnotationAssertion( "Wikipedia:Parietal_lobe") AnnotationAssertion(Annotation( "BIRNLEX:1148") "neuronames:95") -AnnotationAssertion(Annotation( "FMA:61826") Annotation( "FMA:TA") Annotation( ) "regio parietalis") +AnnotationAssertion(Annotation( "FMA:61826") Annotation( "FMA:TA") Annotation( ) "regio parietalis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Parietal_lobe") Annotation( ) "lobus parietalis") +AnnotationAssertion(Annotation( "Wikipedia:Parietal_lobe") Annotation( ) "lobus parietalis") AnnotationAssertion( "UBERON:0001872") AnnotationAssertion( ) AnnotationAssertion( ) @@ -154601,7 +154172,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:CA") "Ammon horn fields") AnnotationAssertion(Annotation( "BTO:0000211") "caudatum") -AnnotationAssertion(Annotation( "BTO:0000211") Annotation( "Wikipedia:Caudate_nucleus") Annotation( ) "nucleus caudatus") +AnnotationAssertion(Annotation( "BTO:0000211") Annotation( "Wikipedia:Caudate_nucleus") Annotation( ) "nucleus caudatus") AnnotationAssertion( "UBERON:0001873") AnnotationAssertion( ) AnnotationAssertion( ) @@ -154704,8 +154275,8 @@ AnnotationAssertion( "amygdaloid area") AnnotationAssertion(Annotation( "BTO:0001042") "amygdaloid nuclear group") AnnotationAssertion(Annotation( "FMA:61841") "amygdaloid nucleus") -AnnotationAssertion(Annotation( "NeuroNames:237") Annotation( ) "corpus amygdalae") -AnnotationAssertion(Annotation( "BTO:0001042") Annotation( "Wikipedia:Amygdala") Annotation( ) "corpus amygdaloideum") +AnnotationAssertion(Annotation( "NeuroNames:237") Annotation( ) "corpus amygdalae") +AnnotationAssertion(Annotation( "BTO:0001042") Annotation( "Wikipedia:Amygdala") Annotation( ) "corpus amygdaloideum") AnnotationAssertion(Annotation( "BTO:0001042") "nucleus amygdalae") AnnotationAssertion( "UBERON:0001876") AnnotationAssertion( ) @@ -154744,8 +154315,8 @@ AnnotationAssertion(Annotation( "Calleja island") AnnotationAssertion( "islands of Calleja") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Islands_of_Calleja") Annotation( ) "insula callejae") -AnnotationAssertion(Annotation( "Wikipedia:Islands_of_Calleja") Annotation( ) "insulae olfactoriae") +AnnotationAssertion(Annotation( "Wikipedia:Islands_of_Calleja") Annotation( ) "insula callejae") +AnnotationAssertion(Annotation( "Wikipedia:Islands_of_Calleja") Annotation( ) "insulae olfactoriae") AnnotationAssertion(Annotation( "NeuroNames:276") "islands of Calleja (olfactory tubercle)") AnnotationAssertion( "UBERON:0001881") AnnotationAssertion( ) @@ -154792,7 +154363,7 @@ AnnotationAssertion(Annotation( "FMA:61889") "colliculus of caudate nucleus") AnnotationAssertion(Annotation( "FMA:61889") Annotation( "Wikipedia:Nucleus_accumbens") "nucleus accumbens septi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:277") Annotation( ) "colliculus nuclei caudati") +AnnotationAssertion(Annotation( "NeuroNames:277") Annotation( ) "colliculus nuclei caudati") AnnotationAssertion( "UBERON:0001882") AnnotationAssertion( ) AnnotationAssertion( ) @@ -154831,7 +154402,7 @@ AnnotationAssertion( "PBA:10096") AnnotationAssertion( "VHOG:0001625") AnnotationAssertion( "Wikipedia:Olfactory_tubercle") -AnnotationAssertion(Annotation( ) "tuberculum olfactorium") +AnnotationAssertion(Annotation( ) "tuberculum olfactorium") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0001883") AnnotationAssertion( ) @@ -154863,7 +154434,7 @@ AnnotationAssertion( "Wikipedia:Phrenic_nerve") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001063") "diaphragmatic nerve") -AnnotationAssertion(Annotation( "BTO:0001063") Annotation( "Wikipedia:Phrenic_nerve") Annotation( ) "nervus phrenicus") +AnnotationAssertion(Annotation( "BTO:0001063") Annotation( "Wikipedia:Phrenic_nerve") Annotation( ) "nervus phrenicus") AnnotationAssertion(Annotation( "BTO:0001063") "phrenic") AnnotationAssertion( "UBERON:0001884") AnnotationAssertion( ) @@ -154908,7 +154479,7 @@ AnnotationAssertion( "fascia dentata") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "DHBA:10295") "dentate area") -AnnotationAssertion(Annotation( "BTO:0002496") Annotation( "Wikipedia:Dentate_gyrus") Annotation( ) "gyrus dentatus") +AnnotationAssertion(Annotation( "BTO:0002496") Annotation( "Wikipedia:Dentate_gyrus") Annotation( ) "gyrus dentatus") AnnotationAssertion(Annotation( "BTO:0002496") "hippocampal dentate gyrus") AnnotationAssertion( "UBERON:0001885") AnnotationAssertion( ) @@ -154950,10 +154521,10 @@ AnnotationAssertion( "ZFA:0001443") AnnotationAssertion( "neuronames:1377") AnnotationAssertion(Annotation( "FMA:61934") "chorioid plexus") -AnnotationAssertion(Annotation( "FMA:61934") Annotation( "FMA:TA") Annotation( ) "plexus choroideus") +AnnotationAssertion(Annotation( "FMA:61934") Annotation( "FMA:TA") Annotation( ) "plexus choroideus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:61934") "choroid plexus of cerebral hemisphere") -AnnotationAssertion(Annotation( "Wikipedia:Choroid_plexus") Annotation( ) "plexus choroideus") +AnnotationAssertion(Annotation( "Wikipedia:Choroid_plexus") Annotation( ) "plexus choroideus") AnnotationAssertion( "ventricular choroid plexus") AnnotationAssertion( "UBERON:0001886") AnnotationAssertion( ) @@ -154987,7 +154558,7 @@ AnnotationAssertion( "BIRNLEX:1559") "UMLS:C0152330") AnnotationAssertion( "Wikipedia:Lateral_olfactory_stria") AnnotationAssertion(Annotation( "BIRNLEX:1559") "neuronames:284") -AnnotationAssertion(Annotation( "ZFA:0000229") Annotation( ) "tractus olfactorius lateralis") +AnnotationAssertion(Annotation( "ZFA:0000229") Annotation( ) "tractus olfactorius lateralis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "LOT") AnnotationAssertion(Annotation( "FMA:61971") Annotation( "NeuroNames:284") "lateral olfactory stria") @@ -154995,8 +154566,8 @@ AnnotationAssertion(Annotation( "NeuroNames:284") "lateral olfactory tract, body") AnnotationAssertion(Annotation( "BAMS:lot") "lateral olfactory tract. body") AnnotationAssertion(Annotation( "NeuroNames:284") "olfactory tract") -AnnotationAssertion(Annotation( "NeuroNames:284") Annotation( "Wikipedia:Lateral_olfactory_stria") Annotation( ) "stria olfactoria lateralis") -AnnotationAssertion(Annotation( "NeuroNames:284") Annotation( ) "tractus olfactorius lateralis") +AnnotationAssertion(Annotation( "NeuroNames:284") Annotation( "Wikipedia:Lateral_olfactory_stria") Annotation( ) "stria olfactoria lateralis") +AnnotationAssertion(Annotation( "NeuroNames:284") Annotation( ) "tractus olfactorius lateralis") AnnotationAssertion( "UBERON:0001888") AnnotationAssertion( ) AnnotationAssertion( ) @@ -155114,7 +154685,7 @@ AnnotationAssertion( "ZFA:0000128") AnnotationAssertion(Annotation( "BIRNLEX:1667") "neuronames:462") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Midbrain") Annotation( ) "mesencephalon") +AnnotationAssertion(Annotation( "Wikipedia:Midbrain") Annotation( ) "mesencephalon") AnnotationAssertion( "UBERON:0001891") AnnotationAssertion( ) AnnotationAssertion( ) @@ -155283,7 +154854,7 @@ AnnotationAssertion(Annotation( "MGI:anna") "thalamencephalon") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000342") "betweenbrain") -AnnotationAssertion(Annotation( "Wikipedia:Diencephalon") Annotation( ) "diencephalon") +AnnotationAssertion(Annotation( "Wikipedia:Diencephalon") Annotation( ) "diencephalon") AnnotationAssertion( "UBERON:0001894") AnnotationAssertion( ) AnnotationAssertion( ) @@ -155377,9 +154948,9 @@ AnnotationAssertion( "XAO:0003100") AnnotationAssertion( "ZFA:0000545") AnnotationAssertion(Annotation( "BIRNLEX:957") "neuronames:698") -AnnotationAssertion(Annotation( "FMA:62004") Annotation( "FMA:TA") Annotation( ) "bulbus") +AnnotationAssertion(Annotation( "FMA:62004") Annotation( "FMA:TA") Annotation( ) "bulbus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Medulla_oblongata") Annotation( ) "medulla oblonzata") +AnnotationAssertion(Annotation( "Wikipedia:Medulla_oblongata") Annotation( ) "medulla oblonzata") AnnotationAssertion(Annotation( "FMA:62004") "metepencephalon") AnnotationAssertion( "UBERON:0001896") AnnotationAssertion( ) @@ -155437,9 +155008,9 @@ AnnotationAssertion( "BIRNLEX:954") "neuronames:300") AnnotationAssertion(Annotation( "PMCID:PMC3345571") "wider thalamus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:300") Annotation( ) "thalamencephalon") +AnnotationAssertion(Annotation( "NeuroNames:300") Annotation( ) "thalamencephalon") AnnotationAssertion(Annotation( "VHOG:0000657") Annotation( ) "thalami") -AnnotationAssertion(Annotation( "NeuroNames:300") Annotation( ) "thalamus opticus") +AnnotationAssertion(Annotation( "NeuroNames:300") Annotation( ) "thalamus opticus") AnnotationAssertion( "UBERON:0001897") AnnotationAssertion( ) AnnotationAssertion( ) @@ -155501,7 +155072,7 @@ AnnotationAssertion(Annotation( "preoptico-hypothalamic area") AnnotationAssertion( "preoptico-hypothalamic region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Hypothalamus") Annotation( ) "hypothalamus") +AnnotationAssertion(Annotation( "Wikipedia:Hypothalamus") Annotation( ) "hypothalamus") AnnotationAssertion( "UBERON:0001898") AnnotationAssertion( ) AnnotationAssertion( ) @@ -155564,7 +155135,7 @@ AnnotationAssertion( "ZFA:0000509") AnnotationAssertion(Annotation( "BIRNLEX:1710") "neuronames:292") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Epithalamus") Annotation( ) "epithalamus") +AnnotationAssertion(Annotation( "Wikipedia:Epithalamus") Annotation( ) "epithalamus") AnnotationAssertion( "UBERON:0001899") AnnotationAssertion( ) AnnotationAssertion( ) @@ -155689,7 +155260,7 @@ AnnotationAssertion( "galen:PinealGland") AnnotationAssertion(Annotation( "BIRNLEX:1184") "neuronames:297") AnnotationAssertion( "corpus pineale") -AnnotationAssertion(Annotation( "FMA:62033") Annotation( "FMA:TA") Annotation( ) "glandula pinealis") +AnnotationAssertion(Annotation( "FMA:62033") Annotation( "FMA:TA") Annotation( ) "glandula pinealis") AnnotationAssertion(Annotation( "FMA:62033") "pineal gland") AnnotationAssertion(Annotation( "ZFA:0000019") "pineal organ") AnnotationAssertion( "uberon") @@ -155748,8 +155319,8 @@ AnnotationAssertion(Annotation( "optic lemniscus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0000252") Annotation( ) "optic tracts") -AnnotationAssertion(Annotation( "NeuroNames:460") Annotation( ) "tractus optici") -AnnotationAssertion(Annotation( "Wikipedia:Optic_tract") Annotation( ) "tractus opticus") +AnnotationAssertion(Annotation( "NeuroNames:460") Annotation( ) "tractus optici") +AnnotationAssertion(Annotation( "Wikipedia:Optic_tract") Annotation( ) "tractus opticus") AnnotationAssertion(Annotation( "GAID:735") "visual pathway") AnnotationAssertion( "UBERON:0001908") AnnotationAssertion( ) @@ -155797,14 +155368,14 @@ AnnotationAssertion( "ncithesaurus:Mammary_Gland") "UMLS:C0929301") AnnotationAssertion( "VHOG:0000398") AnnotationAssertion( "Wikipedia:Mammary_gland") -AnnotationAssertion(Annotation( "FMA:57983") Annotation( "FMA:TA") Annotation( ) "glandula mammaria") +AnnotationAssertion(Annotation( "FMA:57983") Annotation( "FMA:TA") Annotation( ) "glandula mammaria") AnnotationAssertion(Annotation( "FMA:62088") "lactiferous gland") AnnotationAssertion( "lobe of breast") AnnotationAssertion(Annotation( "NCBITaxon:9255") "milk patch") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000817") "Brustdruese") AnnotationAssertion(Annotation( "Wikipedia:Mammary_gland") "dug") -AnnotationAssertion(Annotation( "Wikipedia:Mammary_gland") Annotation( ) "glandula mammaria") +AnnotationAssertion(Annotation( "Wikipedia:Mammary_gland") Annotation( ) "glandula mammaria") AnnotationAssertion(Annotation( "FMA:62088") "lobe of mammary gland") AnnotationAssertion(Annotation( "BTO:0000817") "mamma") AnnotationAssertion(Annotation( ) "mammae") @@ -156012,9 +155583,9 @@ AnnotationAssertion( "BTO:0004367") Annotation( ) "LGB") AnnotationAssertion(Annotation( "BTO:0004367") "corpus geniculatum externum") AnnotationAssertion(Annotation( "BTO:0004367") "corpus geniculatum laterale") -AnnotationAssertion(Annotation( "NeuroNames:352") Annotation( ) "corpus geniculatus lateralis") +AnnotationAssertion(Annotation( "NeuroNames:352") Annotation( ) "corpus geniculatus lateralis") AnnotationAssertion(Annotation( "Wikipedia:Lateral_geniculate_nucleus") "external geniculate body") -AnnotationAssertion(Annotation( "BAMS:LG") Annotation( "NeuroNames:352") Annotation( ) "nucleus corporis geniculati lateralis") +AnnotationAssertion(Annotation( "BAMS:LG") Annotation( "NeuroNames:352") Annotation( ) "nucleus corporis geniculati lateralis") AnnotationAssertion( "UBERON:0001926") AnnotationAssertion( ) AnnotationAssertion( ) @@ -156057,8 +155628,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001796") "area hypothalamica rostralis") AnnotationAssertion( "area praeoptica") -AnnotationAssertion(Annotation( "Wikipedia:Preoptic_area") Annotation( ) "area preoptica") -AnnotationAssertion(Annotation( "NeuroNames:377") Annotation( ) "nuclei preoptici") +AnnotationAssertion(Annotation( "Wikipedia:Preoptic_area") Annotation( ) "area preoptica") +AnnotationAssertion(Annotation( "NeuroNames:377") Annotation( ) "nuclei preoptici") AnnotationAssertion(Annotation( "BTO:0001796") "preoptic hypothalamic area") AnnotationAssertion(Annotation( "BTO:0001796") "preoptic hypothalamic region") AnnotationAssertion( "preoptic region") @@ -156102,11 +155673,11 @@ AnnotationAssertion( "paraventricular hypothalamic nucleus") AnnotationAssertion( "paraventricular nucleus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nuclei paraventriculares") -AnnotationAssertion(Annotation( "Wikipedia:Paraventricular_nucleus_of_hypothalamus") Annotation( ) "nuclei paraventricularis hypothalami") -AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nucleus filiformis") -AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nucleus hypothalami filiformis") -AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nucleus hypothalami paraventricularis") +AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nuclei paraventriculares") +AnnotationAssertion(Annotation( "Wikipedia:Paraventricular_nucleus_of_hypothalamus") Annotation( ) "nuclei paraventricularis hypothalami") +AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nucleus filiformis") +AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nucleus hypothalami filiformis") +AnnotationAssertion(Annotation( "NeuroNames:387") Annotation( ) "nucleus hypothalami paraventricularis") AnnotationAssertion(Annotation( "BTO:0002476") "nucleus paraventricularis hypothalami") AnnotationAssertion(Annotation( "NeuroNames:387") "paraventricular nucleus hypothalamus (Malone)") AnnotationAssertion(Annotation( "NeuroNames:387") "paraventricular nucleus of the hypothalamus") @@ -156157,13 +155728,13 @@ AnnotationAssertion( "infundibular hypothalamic nucleus") AnnotationAssertion( "infundibular nucleus") AnnotationAssertion( "infundibular periventricular nucleus") -AnnotationAssertion(Annotation( "FMA:62329") Annotation( "FMA:TA") Annotation( ) "nucleus arcuatus") +AnnotationAssertion(Annotation( "FMA:62329") Annotation( "FMA:TA") Annotation( ) "nucleus arcuatus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:395") "arcuate nucleus of the hypothalamus") -AnnotationAssertion(Annotation( "NeuroNames:395") Annotation( ) "nucleus arcuatus (hypothalamus)") -AnnotationAssertion(Annotation( "Wikipedia:Arcuate_nucleus") Annotation( ) "nucleus arcuatus hypothalami") +AnnotationAssertion(Annotation( "NeuroNames:395") Annotation( ) "nucleus arcuatus (hypothalamus)") +AnnotationAssertion(Annotation( "Wikipedia:Arcuate_nucleus") Annotation( ) "nucleus arcuatus hypothalami") AnnotationAssertion(Annotation( "BTO:0002473") "nucleus infundibularis") -AnnotationAssertion(Annotation( "NeuroNames:395") Annotation( ) "nucleus infundibularis hypothalami") +AnnotationAssertion(Annotation( "NeuroNames:395") Annotation( ) "nucleus infundibularis hypothalami") AnnotationAssertion(Annotation( "BTO:0002473") "nucleus semilunaris") AnnotationAssertion( "UBERON:0001932") AnnotationAssertion( ) @@ -156191,6 +155762,7 @@ AnnotationAssertion( "HBA:9002") AnnotationAssertion( "MA:0000212") AnnotationAssertion( "MAT:0000452") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D013681") AnnotationAssertion( "SCTID:362392007") AnnotationAssertion( "TAO:0000160") AnnotationAssertion(Annotation( "BIRNLEX:1200") "UMLS:C0039441") @@ -156199,11 +155771,11 @@ AnnotationAssertion( "XAO:0004271") AnnotationAssertion( "ZFA:0000160") AnnotationAssertion(Annotation( "BIRNLEX:1200") "neuronames:491") -AnnotationAssertion(Annotation( "Wikipedia:Midbrain_tegmentum") Annotation( ) "tegmentum mesencephali") +AnnotationAssertion(Annotation( "Wikipedia:Midbrain_tegmentum") Annotation( ) "tegmentum mesencephali") AnnotationAssertion( "tegmentum of midbrain") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "VHOG:0001367") "mesencephalic tegmentum") -AnnotationAssertion(Annotation( "NeuroNames:491") Annotation( ) "tegmentum mesencephalicum") +AnnotationAssertion(Annotation( "NeuroNames:491") Annotation( ) "tegmentum mesencephalicum") AnnotationAssertion( "UBERON:0001943") AnnotationAssertion( ) AnnotationAssertion( ) @@ -156285,7 +155857,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BAMS:iso-cortex") "iso-cortex") AnnotationAssertion(Annotation( "BTO:0000920") "nonolfactory cortex") -AnnotationAssertion(Annotation( "NeuroNames:757") Annotation( ) "nucleus hypoglossalis") +AnnotationAssertion(Annotation( "NeuroNames:757") Annotation( ) "nucleus hypoglossalis") AnnotationAssertion( "UBERON:0001950") AnnotationAssertion( ) AnnotationAssertion( ) @@ -156371,7 +155943,7 @@ AnnotationAssertion(Annotation( "BIRNLEX:721") "ammon horn") AnnotationAssertion( "hippocampus major") AnnotationAssertion(Annotation( "BIRNLEX:721") "hippocampus proper") -AnnotationAssertion(Annotation( "FMA:62493") Annotation( "FMA:TA") Annotation( ) "hippocampus proprius") +AnnotationAssertion(Annotation( "FMA:62493") Annotation( "FMA:TA") Annotation( ) "hippocampus proprius") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:CA") "Ammon horn fields") AnnotationAssertion(Annotation( "BTO:0003705") "Ammons horn") @@ -156460,7 +156032,7 @@ AnnotationAssertion(Annotation( "bronchus submucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of bronchi") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of bronchial trunk") -AnnotationAssertion(Annotation( "FMA:62653") Annotation( "FMA:TA") Annotation( ) "tela submucosa bronchi") +AnnotationAssertion(Annotation( "FMA:62653") Annotation( "FMA:TA") Annotation( ) "tela submucosa bronchi") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002108") "submucous layer of bronchi") AnnotationAssertion( "UBERON:0001957") @@ -156508,12 +156080,12 @@ AnnotationAssertion( "NCIT:C12993") AnnotationAssertion(Annotation( "ncithesaurus:Splenic_White_Pulp") "UMLS:C0229686") AnnotationAssertion( "Wikipedia:White_pulp") -AnnotationAssertion(Annotation( "FMA:62805") Annotation( "FMA:TA") Annotation( ) "pulpa alba") +AnnotationAssertion(Annotation( "FMA:62805") Annotation( "FMA:TA") Annotation( ) "pulpa alba") AnnotationAssertion( "spleen white pulp") AnnotationAssertion( "splenic white pulp") AnnotationAssertion( "white pulp") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:White_pulp") Annotation( ) "noduli lymphoidei splenici") +AnnotationAssertion(Annotation( "Wikipedia:White_pulp") Annotation( ) "noduli lymphoidei splenici") AnnotationAssertion( "UBERON:0001959") AnnotationAssertion( ) AnnotationAssertion( ) @@ -156707,7 +156279,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gastric juice) -AnnotationAssertion(Annotation( "Wikipedia:Gastric_juice") ".") AnnotationAssertion( "BTO:0000501") AnnotationAssertion( "FMA:62972") AnnotationAssertion( "GAID:1160") @@ -156741,9 +156312,9 @@ AnnotationAssertion(Annotation( "submucosa of esophagus") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of gullet") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of oesophagus") -AnnotationAssertion(Annotation( "FMA:62997") Annotation( "FMA:TA") Annotation( ) "tela submucosa (oesophagus)") -AnnotationAssertion(Annotation( "BTO:0002109") Annotation( ) "tela submucosa esophagi") -AnnotationAssertion(Annotation( "FMA:62997") Annotation( "FMA:TA") Annotation( ) "tela submucosa oesophageae") +AnnotationAssertion(Annotation( "FMA:62997") Annotation( "FMA:TA") Annotation( ) "tela submucosa (oesophagus)") +AnnotationAssertion(Annotation( "BTO:0002109") Annotation( ) "tela submucosa esophagi") +AnnotationAssertion(Annotation( "FMA:62997") Annotation( "FMA:TA") Annotation( ) "tela submucosa oesophageae") AnnotationAssertion( "tela submucosa of esophagus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002109") "submucous layer of esophagus") @@ -156805,7 +156376,7 @@ AnnotationAssertion( "OBOL:automatic") "serous membrane of esophagus") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of gullet") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of oesophagus") -AnnotationAssertion(Annotation( "FMA:63057") Annotation( "FMA:TA") Annotation( ) "tunica serosa oesophageae") +AnnotationAssertion(Annotation( "FMA:63057") Annotation( "FMA:TA") Annotation( ) "tunica serosa oesophageae") AnnotationAssertion( "uberon") AnnotationAssertion( "oesophagus serosa") AnnotationAssertion( "UBERON:0001975") @@ -156887,7 +156458,7 @@ AnnotationAssertion( "Wikipedia:Venule") AnnotationAssertion( "ZFA:0005315") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Venule") Annotation( ) "venula") +AnnotationAssertion(Annotation( "Wikipedia:Venule") Annotation( ) "venula") AnnotationAssertion( "UBERON:0001979") AnnotationAssertion( ) AnnotationAssertion( ) @@ -156920,7 +156491,7 @@ AnnotationAssertion( "Wikipedia:Arteriole") AnnotationAssertion( "ZFA:0005255") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Arteriole") Annotation( ) "arteriola") +AnnotationAssertion(Annotation( "Wikipedia:Arteriole") Annotation( ) "arteriola") AnnotationAssertion( "UBERON:0001980") AnnotationAssertion( ) AnnotationAssertion( ) @@ -156970,7 +156541,7 @@ AnnotationAssertion( "FMA:50722") "region of vascular tree organ") AnnotationAssertion(Annotation( "FMA:50722") "vascular tree organ region") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Blood_vessel") Annotation( ) "vas sanguineum") +AnnotationAssertion(Annotation( "Wikipedia:Blood_vessel") Annotation( ) "vas sanguineum") AnnotationAssertion( "UBERON:0001981") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157108,7 +156679,7 @@ AnnotationAssertion( "OBOL:automatic") "cornea endothelium") AnnotationAssertion(Annotation( "OBOL:automatic") "endothelium of cornea") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Corneal_endothelium") Annotation( ) "epithelium posterius corneae") +AnnotationAssertion(Annotation( "Wikipedia:Corneal_endothelium") Annotation( ) "epithelium posterius corneae") AnnotationAssertion( "UBERON:0001985") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157222,7 +156793,7 @@ AnnotationAssertion( "portion of fecal material") AnnotationAssertion( "portion of fecal matter") AnnotationAssertion( "portion of feces") -AnnotationAssertion(Annotation( ) "portionem cacas") +AnnotationAssertion(Annotation( ) "portionem cacas") AnnotationAssertion( "stool") AnnotationAssertion(Annotation( "Wikipedia:Cow_dung") "cow dung") AnnotationAssertion(Annotation( "Wikipedia:Cow_dung") "cow pat") @@ -157266,13 +156837,13 @@ AnnotationAssertion( "MP:0009545") "papillary layer") AnnotationAssertion(Annotation( "FMA:64776") "papillary layer of dermis") AnnotationAssertion(Annotation( "MP:0009545") "stratum papillare") -AnnotationAssertion(Annotation( "FMA:64776") Annotation( "FMA:TA") Annotation( ) "stratum papillare (dermis)") +AnnotationAssertion(Annotation( "FMA:64776") Annotation( "FMA:TA") Annotation( ) "stratum papillare (dermis)") AnnotationAssertion(Annotation( "MP:0009545") "stratum papillare corii") -AnnotationAssertion(Annotation( "FMA:64776") Annotation( "FMA:TA") Annotation( ) "stratum papillare dermis") +AnnotationAssertion(Annotation( "FMA:64776") Annotation( "FMA:TA") Annotation( ) "stratum papillare dermis") AnnotationAssertion(Annotation( "MA:0000802") Annotation( "MP:0009545") "superficial dermis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35282") "dermal papillary layer") -AnnotationAssertion(Annotation( "Wikipedia:Papillary_dermis") Annotation( ) "stratum papillare") +AnnotationAssertion(Annotation( "Wikipedia:Papillary_dermis") Annotation( ) "stratum papillare") AnnotationAssertion( "UBERON:0001992") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157298,10 +156869,10 @@ AnnotationAssertion( "dermis stratum reticulare") AnnotationAssertion( "reticular dermis") AnnotationAssertion(Annotation( "Wikipedia:Reticular_dermis") "stratum reticulare") -AnnotationAssertion(Annotation( "FMA:64778") Annotation( "FMA:TA") Annotation( ) "stratum reticulare dermis") +AnnotationAssertion(Annotation( "FMA:64778") Annotation( "FMA:TA") Annotation( ) "stratum reticulare dermis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35283") "dermal reticular layer") -AnnotationAssertion(Annotation( "Wikipedia:Reticular_dermis") Annotation( ) "stratum reticulare") +AnnotationAssertion(Annotation( "Wikipedia:Reticular_dermis") Annotation( ) "stratum reticulare") AnnotationAssertion( "UBERON:0001993") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157348,7 +156919,7 @@ AnnotationAssertion(Annotation( "fibrocartilaginous") AnnotationAssertion( "FMA:64784") AnnotationAssertion( "MA:0000108") -AnnotationAssertion( "MESH:D051445") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D051445") AnnotationAssertion( "NCIT:C32599") AnnotationAssertion( "SCTID:91685003") AnnotationAssertion(Annotation( "ncithesaurus:Fibrocartilage") "UMLS:C0684077") @@ -157530,7 +157101,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Cortex_of_lymph_node") AnnotationAssertion( "lymph node cortex") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cortex_of_lymph_node") Annotation( ) "cortex nodi lymphoidei") +AnnotationAssertion(Annotation( "Wikipedia:Cortex_of_lymph_node") Annotation( ) "cortex nodi lymphoidei") AnnotationAssertion( "UBERON:0002006") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157550,7 +157121,7 @@ AnnotationAssertion( "MA:0000745") AnnotationAssertion( "lymph node medulla") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Medulla_of_lymph_node") Annotation( ) "medulla nodi lymphoidei") +AnnotationAssertion(Annotation( "Wikipedia:Medulla_of_lymph_node") Annotation( ) "medulla nodi lymphoidei") AnnotationAssertion( "UBERON:0002007") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157577,7 +157148,7 @@ AnnotationAssertion(Annotation( "cardiac plexus") AnnotationAssertion(Annotation( "OBOL:automatic") "heart autonomic nerve plexus") AnnotationAssertion(Annotation( "OBOL:automatic") "heart autonomic plexus") -AnnotationAssertion(Annotation( "Wikipedia:Cardiac_plexus") Annotation( ) "plexus cardiacus") +AnnotationAssertion(Annotation( "Wikipedia:Cardiac_plexus") Annotation( ) "plexus cardiacus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002008") AnnotationAssertion( ) @@ -157596,7 +157167,7 @@ AnnotationAssertion( "ncithesaurus:Thoracodorsal_Artery") "UMLS:C0933449") AnnotationAssertion( "Wikipedia:Thoracodorsal_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thoracodorsal_artery") Annotation( ) "arteria thoracodorsalis") +AnnotationAssertion(Annotation( "Wikipedia:Thoracodorsal_artery") Annotation( ) "arteria thoracodorsalis") AnnotationAssertion( "UBERON:0002011") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157634,9 +157205,9 @@ AnnotationAssertion( "FMA:66326") "pulmonary arterial tree") AnnotationAssertion(Annotation( "FMA:66326") "pulmonary arterial tree organ part") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_artery") Annotation( ) "arteria pulmonalis") +AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_artery") Annotation( ) "arteria pulmonalis") AnnotationAssertion(Annotation( "FMA:66326") "pulmonary arterial subtree") -AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_artery") Annotation( ) "truncus pulmonalis") +AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_artery") Annotation( ) "truncus pulmonalis") AnnotationAssertion( "UBERON:0002012") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157668,7 +157239,7 @@ AnnotationAssertion( "ncithesaurus:Renal_Capsule") "UMLS:C0227637") AnnotationAssertion( "Wikipedia:Kidney_capsule") AnnotationAssertion( "galen:CapsuleOfKidney") -AnnotationAssertion(Annotation( "FMA:66610") Annotation( "FMA:TA") Annotation( ) "capsula fibrosa renis") +AnnotationAssertion(Annotation( "FMA:66610") Annotation( "FMA:TA") Annotation( ) "capsula fibrosa renis") AnnotationAssertion( "capsule of kidney") AnnotationAssertion(Annotation( "FMA:66610") "fibrous capsule of kidney") AnnotationAssertion(Annotation( "GO:0072127") "renal capsule") @@ -157714,7 +157285,7 @@ AnnotationAssertion( "galen:PulmonaryVein") AnnotationAssertion( "pulmonary venous tree organ part") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_vein") Annotation( ) "venae pulmonales") +AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_vein") Annotation( ) "venae pulmonales") AnnotationAssertion( "UBERON:0002016") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157782,10 +157353,10 @@ AnnotationAssertion(Annotation( "VHOG:0001282") AnnotationAssertion( "Wikipedia:Synovial_membrane") AnnotationAssertion( "galen:SynovialMembrane") -AnnotationAssertion(Annotation( "FMA:9865") Annotation( "FMA:TA") Annotation( ) "membrana synovialis (capsula articularis)") -AnnotationAssertion(Annotation( "Wikipedia:Synovial_membrane") Annotation( ) "membrana synovialis capsulae articularis") -AnnotationAssertion(Annotation( "FMA:66762") Annotation( "FMA:TA") Annotation( ) "stratum synoviale") -AnnotationAssertion(Annotation( "FMA:9865") Annotation( "FMA:TA") Annotation( ) "stratum synoviale (capsula articularis)") +AnnotationAssertion(Annotation( "FMA:9865") Annotation( "FMA:TA") Annotation( ) "membrana synovialis (capsula articularis)") +AnnotationAssertion(Annotation( "Wikipedia:Synovial_membrane") Annotation( ) "membrana synovialis capsulae articularis") +AnnotationAssertion(Annotation( "FMA:66762") Annotation( "FMA:TA") Annotation( ) "stratum synoviale") +AnnotationAssertion(Annotation( "FMA:9865") Annotation( "FMA:TA") Annotation( ) "stratum synoviale (capsula articularis)") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:9865") "synovial layer of articular capsule of synovial joint") AnnotationAssertion(Annotation( "FMA:9865") "synovial membrane of articular capsule of synovial joint") @@ -157842,9 +157413,9 @@ AnnotationAssertion( "cervical accessory nerve") AnnotationAssertion(Annotation( "BIRNLEX:812") "cranial nerve XI") AnnotationAssertion(Annotation( "BIRNLEX:812") "eleventh cranial nerve") -AnnotationAssertion(Annotation( "FMA:6720") Annotation( "FMA:TA") Annotation( ) "nervus accessorius [XI]") -AnnotationAssertion(Annotation( "FMA:6720") Annotation( "FMA:TA") Annotation( ) "pars spinalis nervus accessorius") -AnnotationAssertion(Annotation( "FMA:6720") Annotation( "FMA:TA") Annotation( ) "radix spinalis nervus accessorius") +AnnotationAssertion(Annotation( "FMA:6720") Annotation( "FMA:TA") Annotation( ) "nervus accessorius [XI]") +AnnotationAssertion(Annotation( "FMA:6720") Annotation( "FMA:TA") Annotation( ) "pars spinalis nervus accessorius") +AnnotationAssertion(Annotation( "FMA:6720") Annotation( "FMA:TA") Annotation( ) "radix spinalis nervus accessorius") AnnotationAssertion(Annotation( "FMA:6720") "spinal accessory nerve") AnnotationAssertion( "spinal accessory nerve tree") AnnotationAssertion( "spinal part of accessory nerve") @@ -157871,7 +157442,7 @@ AnnotationAssertion(Annotation( "FMA:67242") AnnotationAssertion( "HBA:4006") AnnotationAssertion( "MA:0001112") -AnnotationAssertion( "MESH:D066128") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066128") AnnotationAssertion( "NCIT:C32695") AnnotationAssertion( "TAO:0002197") AnnotationAssertion(Annotation( "ncithesaurus:Gray_Matter") "UMLS:C0018220") @@ -157885,10 +157456,10 @@ AnnotationAssertion( "grey matter of neuraxis") AnnotationAssertion( "grey substance") AnnotationAssertion(Annotation( "AEO:0001012") "neuronal grey matter") -AnnotationAssertion(Annotation( "FMA:67242") Annotation( "FMA:TA") Annotation( ) "substantia grisea") +AnnotationAssertion(Annotation( "FMA:67242") Annotation( "FMA:TA") Annotation( ) "substantia grisea") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0001681") "gray mater") -AnnotationAssertion(Annotation( ) "grisea") +AnnotationAssertion(Annotation( ) "grisea") AnnotationAssertion( "UBERON:0002020") AnnotationAssertion( ) AnnotationAssertion( ) @@ -157908,7 +157479,7 @@ AnnotationAssertion( "Wikipedia:Malpighian_layer") "Malpighian layer") AnnotationAssertion(Annotation( ) "rete Malphighii") AnnotationAssertion( "rete Malpighii") -AnnotationAssertion(Annotation( "Wikipedia:Malpighian_layer") Annotation( ) "stratum Malpighi") +AnnotationAssertion(Annotation( "Wikipedia:Malpighian_layer") Annotation( ) "stratum Malpighi") AnnotationAssertion( "stratum basale") AnnotationAssertion( "stratum germinosum") AnnotationAssertion( "AAO:0010598") @@ -157953,7 +157524,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum. [Wikipedia:Stratum_spinosum]") AnnotationAssertion(Annotation( "Wikipedia:Malpighian_layer") "Malpighian layer") -AnnotationAssertion(Annotation( "Wikipedia:Malpighian") Annotation( ) "stratum Malpighii") +AnnotationAssertion(Annotation( "Wikipedia:Malpighian") Annotation( ) "stratum Malpighii") AnnotationAssertion( "BTO:0000435") AnnotationAssertion( "EMAPA:32785") AnnotationAssertion( "FMA:67542") @@ -158003,7 +157574,7 @@ AnnotationAssertion( "FMA:67545") "horny layer of epidermis") AnnotationAssertion( "keratinized squame layer of epidermis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Stratum_corneum") Annotation( ) "stratum corneum epidermidis") +AnnotationAssertion(Annotation( "Wikipedia:Stratum_corneum") Annotation( ) "stratum corneum epidermidis") AnnotationAssertion( "UBERON:0002027") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158125,7 +157696,7 @@ AnnotationAssertion(Annotation( "papillary part of breast") AnnotationAssertion( "teat") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nipple") Annotation( ) "papilla mammaria") +AnnotationAssertion(Annotation( "Wikipedia:Nipple") Annotation( ) "papilla mammaria") AnnotationAssertion( "UBERON:0002030") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158274,8 +157845,8 @@ AnnotationAssertion( "BIRNLEX:1489") "neuronames:643") AnnotationAssertion(Annotation( "FMA:67944") "epencephalon-1") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:643") Annotation( ) "corpus cerebelli") -AnnotationAssertion(Annotation( "NeuroNames:643") Annotation( ) "parencephalon") +AnnotationAssertion(Annotation( "NeuroNames:643") Annotation( ) "corpus cerebelli") +AnnotationAssertion(Annotation( "NeuroNames:643") Annotation( ) "parencephalon") AnnotationAssertion( "UBERON:0002037") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158324,9 +157895,9 @@ AnnotationAssertion(Annotation( "Soemmering's substance") AnnotationAssertion( "nucleus of basis pedunculi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:536") Annotation( ) "nucleus pigmentosus subthalamo-peduncularis") +AnnotationAssertion(Annotation( "NeuroNames:536") Annotation( ) "nucleus pigmentosus subthalamo-peduncularis") AnnotationAssertion(Annotation( "Wikipedia:Substantia_nigra") "substancia nigra") -AnnotationAssertion(Annotation( "NeuroNames:536") Annotation( ) "substantia nigra (Soemmerringi)") +AnnotationAssertion(Annotation( "NeuroNames:536") Annotation( ) "substantia nigra (Soemmerringi)") AnnotationAssertion( "UBERON:0002038") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158358,8 +157929,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Bronchial_artery") AnnotationAssertion( "bronchial arterial tree") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Bronchial_artery") Annotation( ) "arteriae bronchiales") -AnnotationAssertion(Annotation( "Wikipedia:Bronchial_artery") Annotation( ) "rami bronchiales partis thoracicae aortae") +AnnotationAssertion(Annotation( "Wikipedia:Bronchial_artery") Annotation( ) "arteriae bronchiales") +AnnotationAssertion(Annotation( "Wikipedia:Bronchial_artery") Annotation( ) "rami bronchiales partis thoracicae aortae") AnnotationAssertion( "UBERON:0002040") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158434,7 +158005,7 @@ AnnotationAssertion( "galen:ThyroidGland") AnnotationAssertion( "thyroid") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thyroid") Annotation( ) "glandula thyroidea") +AnnotationAssertion(Annotation( "Wikipedia:Thyroid") Annotation( ) "glandula thyroidea") AnnotationAssertion( "UBERON:0002046") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158473,11 +158044,11 @@ AnnotationAssertion(Annotation( "Wikipedia:Pontine_raphe_nucleus") AnnotationAssertion(Annotation( "BIRNLEX:1110") "neuronames:589") AnnotationAssertion( "raphe of pons") -AnnotationAssertion(Annotation( "FMA:68875") Annotation( "FMA:TA") Annotation( ) "raphe pontis") +AnnotationAssertion(Annotation( "FMA:68875") Annotation( "FMA:TA") Annotation( ) "raphe pontis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:589") Annotation( ) "nucleus raphe pontis") -AnnotationAssertion(Annotation( "Wikipedia:Pontine_raphe_nucleus") Annotation( ) "nucleus raphes pontis") -AnnotationAssertion(Annotation( "NeuroNames:589") Annotation( ) "raphe (mediana pontina)") +AnnotationAssertion(Annotation( "NeuroNames:589") Annotation( ) "nucleus raphe pontis") +AnnotationAssertion(Annotation( "Wikipedia:Pontine_raphe_nucleus") Annotation( ) "nucleus raphes pontis") +AnnotationAssertion(Annotation( "NeuroNames:589") Annotation( ) "raphe (mediana pontina)") AnnotationAssertion( "raphe pontis nucleus") AnnotationAssertion( "UBERON:0002047") AnnotationAssertion( ) @@ -158520,7 +158091,7 @@ AnnotationAssertion( "Wikipedia:Lung") AnnotationAssertion( "XAO:0000119") AnnotationAssertion( "galen:Lung") -AnnotationAssertion(Annotation( ) "pulmo") +AnnotationAssertion(Annotation( ) "pulmo") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002048") AnnotationAssertion( ) @@ -158578,7 +158149,7 @@ AnnotationAssertion( "BTO:0000174") AnnotationAssertion( "CALOHA:TS-2110") AnnotationAssertion( "EFO:0000461") -AnnotationAssertion( "FBbt:00004208") +AnnotationAssertion(Annotation( ) "FBbt:00004208") AnnotationAssertion( "FMA:69067") AnnotationAssertion( "GAID:407") AnnotationAssertion( "MESH:D004628") @@ -158690,7 +158261,7 @@ AnnotationAssertion( "ncithesaurus:Inferior_Suprarenal_Artery") "UMLS:C0226334") AnnotationAssertion( "Wikipedia:Inferior_suprarenal_artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_suprarenal_artery") Annotation( ) "arteria suprarenalis inferior") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_suprarenal_artery") Annotation( ) "arteria suprarenalis inferior") AnnotationAssertion( "UBERON:0002056") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158731,7 +158302,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Femoral_artery") AnnotationAssertion( "galen:FemoralArtery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Femoral_artery") Annotation( ) "arteria femoralis") +AnnotationAssertion(Annotation( "Wikipedia:Femoral_artery") Annotation( ) "arteria femoralis") AnnotationAssertion( "UBERON:0002060") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "femoral artery") @@ -158775,7 +158346,7 @@ AnnotationAssertion( "EMAPA:16696") AnnotationAssertion( "FMA:70302") AnnotationAssertion( "MA:0000078") -AnnotationAssertion( "MESH:D054089") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D054089") AnnotationAssertion( "TAO:0001317") AnnotationAssertion( "VHOG:0000932") AnnotationAssertion( "Wikipedia:Atrioventricular_cushions") @@ -158827,7 +158398,7 @@ AnnotationAssertion( "ZFA:0000154") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Sinus_venosus") "sinus venarum") -AnnotationAssertion(Annotation( "Wikipedia:Sinus_venosus") Annotation( ) "sinus venosus cordis") +AnnotationAssertion(Annotation( "Wikipedia:Sinus_venosus") Annotation( ) "sinus venosus cordis") AnnotationAssertion(Annotation( "Wikipedia:Sinus_venosus") "venarum") AnnotationAssertion(Annotation( "Wikipedia:Sinus_venosus") "venarum sinus") AnnotationAssertion(Annotation( "Wikipedia:Sinus_venosus") "venosus") @@ -158864,7 +158435,7 @@ AnnotationAssertion( "ncithesaurus:Umbilical_Vein") "UMLS:C0041637") AnnotationAssertion( "Wikipedia:Umbilical_vein") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Umbilical_vein") Annotation( ) "vena umbilicalis") +AnnotationAssertion(Annotation( "Wikipedia:Umbilical_vein") Annotation( ) "vena umbilicalis") AnnotationAssertion( "UBERON:0002066") AnnotationAssertion( ) AnnotationAssertion( ) @@ -158907,7 +158478,7 @@ AnnotationAssertion( "ZFA:0001119") AnnotationAssertion( "vertebrate dermis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0000294") Annotation( "Wikipedia:Dermis") Annotation( ) "corium") +AnnotationAssertion(Annotation( "BTO:0000294") Annotation( "Wikipedia:Dermis") Annotation( ) "corium") AnnotationAssertion(Annotation( "BTO:0000294") "cutis") AnnotationAssertion( "UBERON:0002067") AnnotationAssertion( ) @@ -158966,6 +158537,7 @@ AnnotationAssertion( "CALOHA:TS-2366") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37505") AnnotationAssertion( "FMA:70544") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D040521") AnnotationAssertion( "NCIT:C33645") AnnotationAssertion( "TAO:0001136") AnnotationAssertion(Annotation( "ncithesaurus:Subcutis") "UMLS:C0278403") @@ -158979,7 +158551,7 @@ AnnotationAssertion(Annotation( "subcutis") AnnotationAssertion(Annotation( "BTO:0004525") "subtegumental tissue") AnnotationAssertion(Annotation( ) "superficial fascia") -AnnotationAssertion(Annotation( "Wikipedia:Hypodermis") Annotation( ) "tela subcutanea") +AnnotationAssertion(Annotation( "Wikipedia:Hypodermis") Annotation( ) "tela subcutanea") AnnotationAssertion( "UBERON:0002072") AnnotationAssertion( ) AnnotationAssertion( ) @@ -159016,7 +158588,7 @@ AnnotationAssertion(Annotation( "VHOG:0001268") AnnotationAssertion( "Wikipedia:Hair_follicle") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Hair_follicle") Annotation( ) "folliculus pili") +AnnotationAssertion(Annotation( "Wikipedia:Hair_follicle") Annotation( ) "folliculus pili") AnnotationAssertion( "UBERON:0002073") AnnotationAssertion( ) AnnotationAssertion( ) @@ -159146,7 +158718,7 @@ AnnotationAssertion(Annotation( "right atrium of heart") AnnotationAssertion( "right cardiac atrium") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Right_atrium") Annotation( ) "atrium dextrum") +AnnotationAssertion(Annotation( "Wikipedia:Right_atrium") Annotation( ) "atrium dextrum") AnnotationAssertion( "UBERON:0002078") AnnotationAssertion( ) AnnotationAssertion( ) @@ -159179,7 +158751,7 @@ AnnotationAssertion( "Wikipedia:Left_atrium") AnnotationAssertion( "XAO:0003191") AnnotationAssertion( "galen:LeftAtrium") -AnnotationAssertion(Annotation( "Wikipedia:Left_atrium") Annotation( ) "atrium sinistrum") +AnnotationAssertion(Annotation( "Wikipedia:Left_atrium") Annotation( ) "atrium sinistrum") AnnotationAssertion( "cardiac left atrium") AnnotationAssertion(Annotation( "MA:0000074") "heart left atrium") AnnotationAssertion(Annotation( "VHOG:0000369") "left atrium") @@ -159221,7 +158793,7 @@ AnnotationAssertion(Annotation( "right ventricle of heart") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:17340") "right cardiac ventricle") -AnnotationAssertion(Annotation( "Wikipedia:Right_ventricle") Annotation( ) "ventriculus dexter") +AnnotationAssertion(Annotation( "Wikipedia:Right_ventricle") Annotation( ) "ventriculus dexter") AnnotationAssertion( "UBERON:0002080") AnnotationAssertion( ) AnnotationAssertion( ) @@ -159347,7 +158919,7 @@ AnnotationAssertion( "FMA:7101") "left ventricle") AnnotationAssertion( "left ventricle of heart") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Left_ventricle") Annotation( ) "ventriculus sinister cordis") +AnnotationAssertion(Annotation( "Wikipedia:Left_ventricle") Annotation( ) "ventriculus sinister cordis") AnnotationAssertion( "UBERON:0002084") AnnotationAssertion( ) AnnotationAssertion( ) @@ -159419,6 +158991,7 @@ AnnotationAssertion(Annotation( "FMA:71221") AnnotationAssertion( "MA:0002986") AnnotationAssertion( "MAT:0000148") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D013131") AnnotationAssertion( "MIAA:0000148") AnnotationAssertion( "TAO:0000317") AnnotationAssertion( "VHOG:0000317") @@ -159466,7 +159039,7 @@ AnnotationAssertion( "https://github.com/obophenotype/uberon/issues/59") "entire appendicular skeleton") AnnotationAssertion(Annotation( ) "paired fin skeleton") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Appendicular_skeleton") Annotation( ) "skeleton appendiculare") +AnnotationAssertion(Annotation( "Wikipedia:Appendicular_skeleton") Annotation( ) "skeleton appendiculare") AnnotationAssertion( "UBERON:0002091") AnnotationAssertion( ) AnnotationAssertion( ) @@ -159496,7 +159069,7 @@ AnnotationAssertion( "ncithesaurus:Cerebral_Dura_Mater") "UMLS:C0459393") AnnotationAssertion( "VHOG:0000270") AnnotationAssertion(Annotation( "FMA:71236") "cranial dura mater") -AnnotationAssertion(Annotation( "FMA:71236") Annotation( "FMA:TA") Annotation( ) "dura mater cranialis") +AnnotationAssertion(Annotation( "FMA:71236") Annotation( "FMA:TA") Annotation( ) "dura mater cranialis") AnnotationAssertion( "dura mater encephali") AnnotationAssertion( "dura mater of brain") AnnotationAssertion( "uberon") @@ -159555,7 +159128,7 @@ AnnotationAssertion( "BTO:0002483") "interventricular septum of heart") AnnotationAssertion(Annotation( "BTO:0002483") "interventriculare cordis") AnnotationAssertion(Annotation( "Wikipedia:Interventricular_septum") "intraventricular septum") -AnnotationAssertion(Annotation( "Wikipedia:Interventricular_septum") Annotation( ) "s. interventriculare cordis") +AnnotationAssertion(Annotation( "Wikipedia:Interventricular_septum") Annotation( ) "s. interventriculare cordis") AnnotationAssertion(Annotation( "Wikipedia:Interventricular_septum") "septum inferius") AnnotationAssertion(Annotation( "Wikipedia:Interventricular_septum") "septum membranaceum") AnnotationAssertion( "ventricle septum") @@ -159731,6 +159304,7 @@ AnnotationAssertion( "GAID:36") AnnotationAssertion( "MA:0000007") AnnotationAssertion( "MAT:0000090") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005121") AnnotationAssertion( "MIAA:0000090") AnnotationAssertion( "NCIT:C12429") AnnotationAssertion( "SCTID:243996003") @@ -159794,7 +159368,7 @@ AnnotationAssertion( "forelimb") AnnotationAssertion(Annotation( "FMA:24878") "free part of upper limb") AnnotationAssertion(Annotation( "FMA:24878") Annotation( "UBERONREF:0000003") "free upper limb") -AnnotationAssertion(Annotation( "FMA:7183") Annotation( "FMA:TA") Annotation( ) "membrum superius") +AnnotationAssertion(Annotation( "FMA:7183") Annotation( "FMA:TA") Annotation( ) "membrum superius") AnnotationAssertion( "pectoral limb") AnnotationAssertion( "superior member") AnnotationAssertion( "upper extremity") @@ -159852,11 +159426,11 @@ AnnotationAssertion(Annotation( "hindlimb") AnnotationAssertion( "inferior member") AnnotationAssertion( "lower limb") -AnnotationAssertion(Annotation( "FMA:7184") Annotation( "FMA:TA") Annotation( ) "membrum inferius") +AnnotationAssertion(Annotation( "FMA:7184") Annotation( "FMA:TA") Annotation( ) "membrum inferius") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:24879") "free part of lower limb") AnnotationAssertion( "lower extremity") -AnnotationAssertion(Annotation( "Wikipedia:Lower_limb") Annotation( ) "membrum inferius") +AnnotationAssertion(Annotation( "Wikipedia:Lower_limb") Annotation( ) "membrum inferius") AnnotationAssertion( "pelvic appendage") AnnotationAssertion( "UBERON:0002103") AnnotationAssertion( ) @@ -159959,7 +159533,7 @@ AnnotationAssertion( "ZFA:0000436") AnnotationAssertion( "galen:Spleen") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Spleen") Annotation( ) "lien") +AnnotationAssertion(Annotation( "Wikipedia:Spleen") Annotation( ) "lien") AnnotationAssertion( "UBERON:0002106") AnnotationAssertion( ) AnnotationAssertion( ) @@ -160017,8 +159591,8 @@ AnnotationAssertion( "ZFA:0000123") AnnotationAssertion( "galen:Liver") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Liver") Annotation( ) "iecur") -AnnotationAssertion(Annotation( "Wikipedia:Liver") Annotation( ) "jecur") +AnnotationAssertion(Annotation( "Wikipedia:Liver") Annotation( ) "iecur") +AnnotationAssertion(Annotation( "Wikipedia:Liver") Annotation( ) "jecur") AnnotationAssertion( "UBERON:0002107") AnnotationAssertion( ) AnnotationAssertion( ) @@ -160080,7 +159654,7 @@ AnnotationAssertion( "small intestine") AnnotationAssertion( "uberon") AnnotationAssertion( "anterior intestine") -AnnotationAssertion(Annotation( "BTO:0000651") Annotation( "Wikipedia:Small_intestine") Annotation( ) "intestinum tenue") +AnnotationAssertion(Annotation( "BTO:0000651") Annotation( "Wikipedia:Small_intestine") Annotation( ) "intestinum tenue") AnnotationAssertion( "mid intestine") AnnotationAssertion( "UBERON:0002108") AnnotationAssertion( ) @@ -160155,8 +159729,8 @@ AnnotationAssertion( "WikipediaVersioned:Gallbladder&oldid=1092217922") "cholecyst") AnnotationAssertion( "gall bladder") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Gallbladder") Annotation( ) "vesica biliaris") -AnnotationAssertion(Annotation( "Wikipedia:Gallbladder") Annotation( ) "vesica fellea") +AnnotationAssertion(Annotation( "Wikipedia:Gallbladder") Annotation( ) "vesica biliaris") +AnnotationAssertion(Annotation( "Wikipedia:Gallbladder") Annotation( ) "vesica fellea") AnnotationAssertion( "UBERON:0002110") AnnotationAssertion( ) AnnotationAssertion( ) @@ -160465,7 +160039,7 @@ AnnotationAssertion( "EMAPA:16579") AnnotationAssertion( "FMA:72170") AnnotationAssertion( "MAT:0000117") -AnnotationAssertion( "MESH:D060910") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D060910") AnnotationAssertion( "MIAA:0000117") AnnotationAssertion( "NCIT:C34280") AnnotationAssertion( "SCTID:308804007") @@ -160609,15 +160183,15 @@ AnnotationAssertion( "HBA:9177") AnnotationAssertion( "MA:0001026") AnnotationAssertion( "MBA:398") -AnnotationAssertion( "MESH:D065832") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D065832") AnnotationAssertion(Annotation( "BIRNLEX:1307") "UMLS:C0175427") AnnotationAssertion( "VHOG:0001381") AnnotationAssertion( "Wikipedia:Superior_olivary_complex") AnnotationAssertion(Annotation( "BIRNLEX:1307") "neuronames:569") -AnnotationAssertion(Annotation( "FMA:72247") Annotation( "FMA:TA") Annotation( ) "nucleus olivaris superior") +AnnotationAssertion(Annotation( "FMA:72247") Annotation( "FMA:TA") Annotation( ) "nucleus olivaris superior") AnnotationAssertion(Annotation( "FMA:72247") "superior olivary nuclei") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:569") Annotation( ) "regio olivaris superioris") +AnnotationAssertion(Annotation( "NeuroNames:569") Annotation( ) "regio olivaris superioris") AnnotationAssertion(Annotation( "FMA:72247") Annotation( ) "superior olivary nucleus") AnnotationAssertion(Annotation( "NeuroNames:569") "superior olivary nucleus (Barr & Kiernan)") AnnotationAssertion(Annotation( "FMA:72247") Annotation( "ISBN:0-19-502694-2") Annotation( ) "superior olive") @@ -160662,7 +160236,7 @@ AnnotationAssertion(Annotation( "DMBA:CbHCx") "cortex of cerebellar hemisphere") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000043") "cortex cerebellaris") -AnnotationAssertion(Annotation( "NeuroNames:647") Annotation( ) "cortex cerebelli") +AnnotationAssertion(Annotation( "NeuroNames:647") Annotation( ) "cortex cerebelli") AnnotationAssertion( "UBERON:0002129") AnnotationAssertion( ) AnnotationAssertion( ) @@ -160701,9 +160275,9 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "SCO") AnnotationAssertion(Annotation( "BAMS:SCO") "cerebral aqueduct subcommissural organ") -AnnotationAssertion(Annotation( "NeuroNames:483") Annotation( ) "corpus subcommissurale") +AnnotationAssertion(Annotation( "NeuroNames:483") Annotation( ) "corpus subcommissurale") AnnotationAssertion( "dorsal subcommissural organ") -AnnotationAssertion(Annotation( "Wikipedia:Subcommissural_organ") Annotation( ) "organum subcommissurale") +AnnotationAssertion(Annotation( "Wikipedia:Subcommissural_organ") Annotation( ) "organum subcommissurale") AnnotationAssertion( "UBERON:0002139") AnnotationAssertion( ) AnnotationAssertion( ) @@ -160753,7 +160327,7 @@ AnnotationAssertion( "BIRNLEX:905") "locus caeruleus") AnnotationAssertion( "locus coeruleu") AnnotationAssertion( "locus coeruleus") -AnnotationAssertion(Annotation( "FMA:72478") Annotation( "FMA:TA") Annotation( ) "nucleus caeruleus") +AnnotationAssertion(Annotation( "FMA:72478") Annotation( "FMA:TA") Annotation( ) "nucleus caeruleus") AnnotationAssertion( "nucleus of locus caeruleus") AnnotationAssertion(Annotation( "BIRNLEX:905") "nucleus pigmentosus pontis") AnnotationAssertion(Annotation( "BIRNLEX:905") "substantia ferruginea") @@ -160761,7 +160335,7 @@ AnnotationAssertion( "ZFA:0000539") Annotation( ) "loci coeruleus") AnnotationAssertion(Annotation( "BTO:0001408") "locus cinereus") AnnotationAssertion(Annotation( "NeuroNames:583") "locus coeruleus (Vicq d'Azyr)") -AnnotationAssertion(Annotation( "NeuroNames:583") Annotation( ) "nucleus loci caerulei") +AnnotationAssertion(Annotation( "NeuroNames:583") Annotation( ) "nucleus loci caerulei") AnnotationAssertion( "UBERON:0002148") AnnotationAssertion( ) AnnotationAssertion( ) @@ -160802,10 +160376,10 @@ AnnotationAssertion( "BIRNLEX:1131") "neuronames:590") AnnotationAssertion(Annotation( "GO:0021753") "superior salivary nucleus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivarius superior") -AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivatorius cranialis") -AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivatorius rostralis") -AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivatorius superior") +AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivarius superior") +AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivatorius cranialis") +AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivatorius rostralis") +AnnotationAssertion(Annotation( "NeuroNames:590") Annotation( ) "nucleus salivatorius superior") AnnotationAssertion( "UBERON:0002149") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "superior salivatory nucleus") @@ -160982,7 +160556,7 @@ AnnotationAssertion( "ncithesaurus:Alveolar_Duct") "UMLS:C0391892") AnnotationAssertion( "Wikipedia:Alveolar_duct") AnnotationAssertion(Annotation( "MA:0000417") "alveolar duct") -AnnotationAssertion(Annotation( "FMA:7341") Annotation( "FMA:TA") Annotation( ) "ductus alveolaris") +AnnotationAssertion(Annotation( "FMA:7341") Annotation( "FMA:TA") Annotation( ) "ductus alveolaris") AnnotationAssertion( "respiratory alveolar duct") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002173") @@ -161008,7 +160582,7 @@ AnnotationAssertion( "anterior funiculus") AnnotationAssertion( "anterior funiculus of spinal cord") AnnotationAssertion(Annotation( "FMA:74003") "anterior white column of spinal cord") -AnnotationAssertion(Annotation( "FMA:74003") Annotation( "FMA:TA") Annotation( ) "funiculus anterior medullae spinalis") +AnnotationAssertion(Annotation( "FMA:74003") Annotation( "FMA:TA") Annotation( ) "funiculus anterior medullae spinalis") AnnotationAssertion(Annotation( "ZFA:0000605") "ventral funiculus") AnnotationAssertion( "ventral funiculus of spinal cord") AnnotationAssertion(Annotation( "FMA:74003") "ventral white column of spinal cord") @@ -161044,7 +160618,7 @@ AnnotationAssertion( "SCTID:245509008") AnnotationAssertion(Annotation( "ncithesaurus:Lobar_Bronchus") "UMLS:C0225653") AnnotationAssertion( "Wikipedia:Secondary_bronchus") -AnnotationAssertion(Annotation( "Wikipedia:Secondary_bronchus") Annotation( ) "bronchi lobaris") +AnnotationAssertion(Annotation( "Wikipedia:Secondary_bronchus") Annotation( ) "bronchi lobaris") AnnotationAssertion(Annotation( "FMA:7406") Annotation( "Wikipedia:Secondary_bronchus") "secondary bronchus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Secondary_bronchus") Annotation( ) "lobar bronchi") @@ -161102,6 +160676,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "ISBN:0-397-51047-0") Annotation( "MESH:A04.411.125") Annotation( "MGI:cwg") Annotation( "MP:0002264") "The upper conducting airways of the lung; these airways arise from the terminus of the trachea.") AnnotationAssertion(Annotation( "Wikipedia") ) +AnnotationAssertion( ) AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000262") Annotation( "VHOG") Annotation( "http://bgee.unil.ch/") "Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]") AnnotationAssertion( "bronchial") AnnotationAssertion( "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue") @@ -161128,6 +160703,7 @@ AnnotationAssertion( "BTO:0001340") "bronchial tissue") AnnotationAssertion( "UBERON:0002185") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -161154,7 +160730,7 @@ AnnotationAssertion( "EMAPA:32697") AnnotationAssertion( "FMA:7410") AnnotationAssertion( "MA:0000422") -AnnotationAssertion( "MESH:D055745") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D055745") AnnotationAssertion( "NCIT:C12684") AnnotationAssertion( "SCTID:278982001") AnnotationAssertion(Annotation( "ncithesaurus:Bronchiole") "UMLS:C0006270") @@ -161185,9 +160761,9 @@ AnnotationAssertion( "SCTID:278981008") AnnotationAssertion(Annotation( "ncithesaurus:Terminal_Bronchiole") "UMLS:C0225666") AnnotationAssertion( "Wikipedia:Terminal_bronchiole") -AnnotationAssertion(Annotation( ) "bronchiolus terminalis") +AnnotationAssertion(Annotation( ) "bronchiolus terminalis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Terminal_bronchiole") Annotation( ) "bronchioli terminalis") +AnnotationAssertion(Annotation( "Wikipedia:Terminal_bronchiole") Annotation( ) "bronchioli terminalis") AnnotationAssertion( "terminal bronchiole tube") AnnotationAssertion( "UBERON:0002187") AnnotationAssertion( ) @@ -161213,8 +160789,8 @@ AnnotationAssertion( "SCTID:128517006") AnnotationAssertion(Annotation( "ncithesaurus:Respiratory_Bronchiole") "UMLS:C1261270") AnnotationAssertion( "Wikipedia:Respiratory_bronchiole") -AnnotationAssertion(Annotation( "Wikipedia:Respiratory_bronchiole") Annotation( ) "bronchiolus respiratorii") -AnnotationAssertion(Annotation( "FMA:7412") Annotation( ) "bronchiolus respiratorius") +AnnotationAssertion(Annotation( "Wikipedia:Respiratory_bronchiole") Annotation( ) "bronchiolus respiratorii") +AnnotationAssertion(Annotation( "FMA:7412") Annotation( ) "bronchiolus respiratorius") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002188") AnnotationAssertion( ) @@ -161239,10 +160815,11 @@ AnnotationAssertion( "EMAPA:35829") AnnotationAssertion( "FMA:74315") AnnotationAssertion( "MA:0000473") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D015434") AnnotationAssertion(Annotation( "FMA:74315") "fatty layer of subcutaneous tissue") AnnotationAssertion(Annotation( "MP:0011156") "hypodermis fat layer") -AnnotationAssertion(Annotation( "FMA:74315") Annotation( "FMA:TA") Annotation( ) "panniculus adiposus (tela subcutanea)") -AnnotationAssertion(Annotation( "FMA:74315") Annotation( "FMA:TA") Annotation( ) "panniculus adiposus telae subcutaneae") +AnnotationAssertion(Annotation( "FMA:74315") Annotation( "FMA:TA") Annotation( ) "panniculus adiposus (tela subcutanea)") +AnnotationAssertion(Annotation( "FMA:74315") Annotation( "FMA:TA") Annotation( ) "panniculus adiposus telae subcutaneae") AnnotationAssertion(Annotation( "MP:0011156") "subcutaneous fat layer") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:74315") "fatty layer of superficial fascia") @@ -161254,6 +160831,50 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (subiculum) + +AnnotationAssertion(Annotation( "BIRNLEX:1305") "Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468).") +AnnotationAssertion(Annotation( "ABA") ) +AnnotationAssertion(Annotation( "ABA") ) +AnnotationAssertion(Annotation( "ABA") ) +AnnotationAssertion( "subicular") +AnnotationAssertion( "The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction.[Wikipedia:Subiculum]") +AnnotationAssertion(Annotation( "ABA") "In ABA SUB is part of the retrohippocampal region, along with the entorhinal area. this is in the hippocampal formation but not the hippocampal region") +AnnotationAssertion( "in DHBA subicular cortex is divided into subiculum, prosubiculum and supracallosal subiculum") +AnnotationAssertion( "BAMS:S") +AnnotationAssertion( "BAMS:SUB") +AnnotationAssertion( "BIRNLEX:1305") +AnnotationAssertion( "BM:Tel-Cx-SB") +AnnotationAssertion( "BTO:0003087") +AnnotationAssertion( "DHBA:10301") +AnnotationAssertion( "DHBA:10302") +AnnotationAssertion( "DMBA:16163") +AnnotationAssertion( "EMAPA:35832") +AnnotationAssertion( "FMA:74414") +AnnotationAssertion( "HBA:12896") +AnnotationAssertion( "MA:0000960") +AnnotationAssertion( "MBA:502") +AnnotationAssertion( "NCIT:C33648") +AnnotationAssertion( "PBA:10054") +AnnotationAssertion( "PBA:128012354") +AnnotationAssertion( "SCTID:369097009") +AnnotationAssertion(Annotation( "ncithesaurus:Subiculum") "UMLS:C0152316") +AnnotationAssertion( "Wikipedia:Subiculum") +AnnotationAssertion( "neuronames:188") +AnnotationAssertion(Annotation( "BIRNLEX:1305") "subicular cortex") +AnnotationAssertion(Annotation( "FMA:74414") "subiculum hippocampi") +AnnotationAssertion( "uberon") +AnnotationAssertion(Annotation( "BTO:0003087") "gyrus parahippocampalis") +AnnotationAssertion(Annotation( "BTO:0003087") "subiculum cornu ammonis") +AnnotationAssertion( "UBERON:0002191") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "subiculum") +AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif"^^xsd:anyURI) +SubClassOf( ) +SubClassOf(Annotation( "NIFSTD") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "Wikipedia") ObjectSomeValuesFrom( )) + # Class: (hemolymphoid system) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs.") @@ -161283,7 +160904,7 @@ AnnotationAssertion( "SCTID:327532004") AnnotationAssertion(Annotation( "ncithesaurus:Lymph_Node_Capsule") "UMLS:C0229699") AnnotationAssertion( "Wikipedia:Lymph_node_capsule") -AnnotationAssertion(Annotation( "FMA:74604") Annotation( "FMA:TA") Annotation( ) "capsula nodi lymphoidei") +AnnotationAssertion(Annotation( "FMA:74604") Annotation( "FMA:TA") Annotation( ) "capsula nodi lymphoidei") AnnotationAssertion( "lymph node capsule") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002194") @@ -161356,14 +160977,14 @@ AnnotationAssertion( "anterior lobe of pituitary") AnnotationAssertion( "anterior lobe of pituitary gland") AnnotationAssertion( "anterior pituitary") -AnnotationAssertion(Annotation( "FMA:74627") Annotation( "FMA:TA") Annotation( ) "lobus anterior (glandula pituitaria)") -AnnotationAssertion(Annotation( "FMA:74627") Annotation( "FMA:TA") Annotation( ) "lobus anterior hypophysis") +AnnotationAssertion(Annotation( "FMA:74627") Annotation( "FMA:TA") Annotation( ) "lobus anterior (glandula pituitaria)") +AnnotationAssertion(Annotation( "FMA:74627") Annotation( "FMA:TA") Annotation( ) "lobus anterior hypophysis") AnnotationAssertion( "pituitary gland, anterior lobe") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:APit") "anterior lobe of the pituitary") AnnotationAssertion(Annotation( "BTO:0000040") "anterior pituitary gland") AnnotationAssertion(Annotation( "BTO:0000496") "cranial lobe") -AnnotationAssertion(Annotation( "NeuroNames:407") Annotation( ) "lobus anterior") +AnnotationAssertion(Annotation( "NeuroNames:407") Annotation( ) "lobus anterior") AnnotationAssertion(Annotation( "EMAPA:17514") "pituitary anterior lobe") AnnotationAssertion(Annotation( "BAMS:AL") "pituitary glandanterior lobe") AnnotationAssertion(Annotation( "BTO:0000496") "rostral lobe") @@ -161421,9 +161042,9 @@ AnnotationAssertion( "ZFA:0001271") AnnotationAssertion(Annotation( "BIRNLEX:1586") "neuronames:401") AnnotationAssertion(Annotation( "FMA:74628") "infundibular process") -AnnotationAssertion(Annotation( "FMA:74628") Annotation( "FMA:TA") Annotation( ) "lobus nervosus neurohypophysis") -AnnotationAssertion(Annotation( "FMA:74628") Annotation( "FMA:TA") Annotation( ) "lobus posterior (glandula pituitaria)") -AnnotationAssertion(Annotation( "FMA:74628") Annotation( "FMA:TA") Annotation( ) "lobus posterior hypophysis") +AnnotationAssertion(Annotation( "FMA:74628") Annotation( "FMA:TA") Annotation( ) "lobus nervosus neurohypophysis") +AnnotationAssertion(Annotation( "FMA:74628") Annotation( "FMA:TA") Annotation( ) "lobus posterior (glandula pituitaria)") +AnnotationAssertion(Annotation( "FMA:74628") Annotation( "FMA:TA") Annotation( ) "lobus posterior hypophysis") AnnotationAssertion(Annotation( "FMA:74628") "neural lobe") AnnotationAssertion(Annotation( "BIRNLEX:1586") "neural lobe of pituitary") AnnotationAssertion(Annotation( "FMA:74628") "neural lobe of pituitary gland") @@ -161434,8 +161055,8 @@ AnnotationAssertion( "FMA:74628") "posterior lobe of pituitary gland") AnnotationAssertion( "posterior pituitary") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:401") Annotation( ) "lobus nervosus") -AnnotationAssertion(Annotation( "NeuroNames:401") Annotation( ) "lobus posterior") +AnnotationAssertion(Annotation( "NeuroNames:401") Annotation( ) "lobus nervosus") +AnnotationAssertion(Annotation( "NeuroNames:401") Annotation( ) "lobus posterior") AnnotationAssertion(Annotation( "BAMS:NL") "pituitary gland neural lobe") AnnotationAssertion(Annotation( "NeuroNames:401") "pituitary gland, neural lobe") AnnotationAssertion(Annotation( "NeuroNames:401") "posterior lobe of hypophysis") @@ -161473,7 +161094,7 @@ AnnotationAssertion( "ZFA:0000368") AnnotationAssertion( "galen:Integument") AnnotationAssertion( "dermis plus epidermis plus hypodermis") -AnnotationAssertion(Annotation( "FMA:74657") Annotation( "FMA:TA") Annotation( ) "integumentum commune") +AnnotationAssertion(Annotation( "FMA:74657") Annotation( "FMA:TA") Annotation( ) "integumentum commune") AnnotationAssertion( "skin and subcutaneous tissue") AnnotationAssertion( "skin plus hypodermis") AnnotationAssertion(Annotation( "FMA:74657") "the integument") @@ -161665,11 +161286,11 @@ AnnotationAssertion( "BIRNLEX:865") "neuronames:412") AnnotationAssertion(Annotation( "ZFA:0000334") "corpus mamillare") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpora mamillaria") -AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpora mammillaria") -AnnotationAssertion(Annotation( "Wikipedia:Mammillary_body") Annotation( ) "corpus mamillare") -AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpus mamillaris") -AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpus mammillare") +AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpora mamillaria") +AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpora mammillaria") +AnnotationAssertion(Annotation( "Wikipedia:Mammillary_body") Annotation( ) "corpus mamillare") +AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpus mamillaris") +AnnotationAssertion(Annotation( "NeuroNames:412") Annotation( ) "corpus mammillare") AnnotationAssertion(Annotation( "DMBA:Mam") "mammillary area") AnnotationAssertion( "UBERON:0002206") AnnotationAssertion( ) @@ -161699,7 +161320,7 @@ AnnotationAssertion( "ZFA:0005156") AnnotationAssertion( "articulatio fibrosa") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Fibrous_joint") Annotation( ) "junctura fibrosa") +AnnotationAssertion(Annotation( "Wikipedia:Fibrous_joint") Annotation( ) "junctura fibrosa") AnnotationAssertion( "UBERON:0002209") AnnotationAssertion( ) AnnotationAssertion( ) @@ -161736,7 +161357,7 @@ AnnotationAssertion( "ncithesaurus:Nerve_Root") "UMLS:C0228084") AnnotationAssertion( "Wikipedia:Nerve_root") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "initial segment of nerve") -AnnotationAssertion(Annotation( ) "radix nervi") +AnnotationAssertion(Annotation( ) "radix nervi") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002211") AnnotationAssertion( ) @@ -161763,7 +161384,7 @@ AnnotationAssertion(Annotation( "macula of saccule") AnnotationAssertion(Annotation( "OBOL:automatic") "macula of sacculus (labyrinthus vestibularis)") AnnotationAssertion(Annotation( "ZFA:0007000") "macula saccule") -AnnotationAssertion(Annotation( "FMA:74944") Annotation( "FMA:TA") Annotation( ) "macula sacculi") +AnnotationAssertion(Annotation( "FMA:74944") Annotation( "FMA:TA") Annotation( ) "macula sacculi") AnnotationAssertion(Annotation( "OBOL:automatic") "membranous labyrinth saccule macula") AnnotationAssertion(Annotation( "ZFA:0007000") "saccular macula") AnnotationAssertion( "saccular macula of membranous labyrinth") @@ -161771,7 +161392,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "saccule of membranous labyrinth macula") AnnotationAssertion(Annotation( "OBOL:automatic") "sacculus (labyrinthus vestibularis) macula") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Macula_of_saccule") Annotation( ) "macula sacculi") +AnnotationAssertion(Annotation( "Wikipedia:Macula_of_saccule") Annotation( ) "macula sacculi") AnnotationAssertion( "saccular maculs") AnnotationAssertion( "UBERON:0002212") AnnotationAssertion( ) @@ -161794,7 +161415,7 @@ AnnotationAssertion( "ZFA:0005155") AnnotationAssertion( "articulatio cartilaginea") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cartilaginous_joint") Annotation( ) "junctura cartilaginea") +AnnotationAssertion(Annotation( "Wikipedia:Cartilaginous_joint") Annotation( ) "junctura cartilaginea") AnnotationAssertion( "UBERON:0002213") AnnotationAssertion( ) AnnotationAssertion( ) @@ -161819,13 +161440,13 @@ AnnotationAssertion(Annotation( "macula of utricle") AnnotationAssertion(Annotation( "OBOL:automatic") "macula of utriculus (labyrinthus vestibularis)") AnnotationAssertion(Annotation( "ZFA:0000030") "macula utricle") -AnnotationAssertion(Annotation( "FMA:74960") Annotation( "FMA:TA") Annotation( ) "macula utriculi") +AnnotationAssertion(Annotation( "FMA:74960") Annotation( "FMA:TA") Annotation( ) "macula utriculi") AnnotationAssertion(Annotation( "OBOL:automatic") "membranous labyrinth utricle macula") AnnotationAssertion(Annotation( "OBOL:automatic") "utricle macula") AnnotationAssertion(Annotation( "OBOL:automatic") "utricle of membranous labyrinth macula") AnnotationAssertion(Annotation( "OBOL:automatic") "utriculus (labyrinthus vestibularis) macula") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Macula_of_utricle") Annotation( ) "macula utriculi") +AnnotationAssertion(Annotation( "Wikipedia:Macula_of_utricle") Annotation( ) "macula utriculi") AnnotationAssertion(Annotation( "ZFA:0000030") Annotation( ) "maculae utricle") AnnotationAssertion( "utricular macula") AnnotationAssertion( "UBERON:0002214") @@ -161848,7 +161469,7 @@ AnnotationAssertion( "MA:0001501") AnnotationAssertion( "SCTID:42903008") AnnotationAssertion( "Wikipedia:Synchondrosis") -AnnotationAssertion(Annotation( "FMA:7497") Annotation( "FMA:TA") Annotation( ) "cartilago epiphysialis") +AnnotationAssertion(Annotation( "FMA:7497") Annotation( "FMA:TA") Annotation( ) "cartilago epiphysialis") AnnotationAssertion(Annotation( "FMA:7497") "primary cartilaginous joint") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:7497") "epiphysial cartilage") @@ -161947,7 +161568,7 @@ AnnotationAssertion( "SCTID:243949006") AnnotationAssertion(Annotation( "ncithesaurus:Thoracic_Cavity") "UMLS:C0230139") AnnotationAssertion( "Wikipedia:Thoracic_cavity") -AnnotationAssertion(Annotation( "Wikipedia:Thoracic_cavity") Annotation( ) "cavitas thoracis") +AnnotationAssertion(Annotation( "Wikipedia:Thoracic_cavity") Annotation( ) "cavitas thoracis") AnnotationAssertion( "cavity of chest") AnnotationAssertion( "cavity of thorax") AnnotationAssertion( "chest cavity") @@ -161987,7 +161608,7 @@ AnnotationAssertion( "Wikipedia:Organ_of_Corti") AnnotationAssertion( "ncithesaurus:Spiral_Organ_of_Corti") AnnotationAssertion( "cochlear spiral organ") -AnnotationAssertion(Annotation( "Wikipedia:Organ_of_Corti") Annotation( ) "organum spirale") +AnnotationAssertion(Annotation( "Wikipedia:Organ_of_Corti") Annotation( ) "organum spirale") AnnotationAssertion( "spiral organ") AnnotationAssertion( "spiral organ of Corti") AnnotationAssertion( "uberon") @@ -162032,6 +161653,7 @@ AnnotationAssertion( "TAO:0000538") AnnotationAssertion(Annotation( "ncithesaurus:Rib") "UMLS:C0035561") AnnotationAssertion( "VHOG:0001154") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "VO:0012403") AnnotationAssertion( "Wikipedia:Rib") AnnotationAssertion( "ZFA:0000538") AnnotationAssertion( "galen:Rib") @@ -162059,7 +161681,7 @@ AnnotationAssertion( "SCTID:361325003") AnnotationAssertion(Annotation( "ncithesaurus:Proximal_Phalanx_of_Hand") "UMLS:C0730117") AnnotationAssertion(Annotation( "MA:0001395") "hand proximal phalanx") -AnnotationAssertion(Annotation( "FMA:75816") Annotation( "FMA:TA") Annotation( ) "phalanx proximalis manus") +AnnotationAssertion(Annotation( "FMA:75816") Annotation( "FMA:TA") Annotation( ) "phalanx proximalis manus") AnnotationAssertion( "proximal manual phalanx") AnnotationAssertion(Annotation( "FMA:75816") "proximal phalanx of finger") AnnotationAssertion( "proximal phalanx of fore digit") @@ -162131,9 +161753,9 @@ AnnotationAssertion( ) "SpC") AnnotationAssertion(Annotation( "NeuroNames:22") "cerebro-cerebellar fissure") AnnotationAssertion(Annotation( "NeuroNames:22") "cerebrocerebellar fissure") -AnnotationAssertion(Annotation( "NeuroNames:22") Annotation( ) "fissura cerebro-cerebellaris") -AnnotationAssertion(Annotation( "NeuroNames:22") Annotation( ) "fissura cerebrocerebellaris") -AnnotationAssertion(Annotation( "BTO:0001279") Annotation( "Wikipedia:Spinal_cord") Annotation( ) "medulla spinalis") +AnnotationAssertion(Annotation( "NeuroNames:22") Annotation( ) "fissura cerebro-cerebellaris") +AnnotationAssertion(Annotation( "NeuroNames:22") Annotation( ) "fissura cerebrocerebellaris") +AnnotationAssertion(Annotation( "BTO:0001279") Annotation( "Wikipedia:Spinal_cord") Annotation( ) "medulla spinalis") AnnotationAssertion(Annotation( "ZFA:0000075") "spinal cord structure") AnnotationAssertion(Annotation( "BTO:0001279") "spinal medulla") AnnotationAssertion( "UBERON:0002240") @@ -162191,7 +161813,7 @@ AnnotationAssertion( "FMA:13550") AnnotationAssertion( "FMA:76703") AnnotationAssertion( "MA:0000112") -AnnotationAssertion( "MESH:D000070614") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000070614") AnnotationAssertion( "SCTID:316586000") AnnotationAssertion( "Wikipedia:Nucleus_pulposus") AnnotationAssertion(Annotation( "FMA:13550") "nucleus pulposus (diskus intervertebralis)") @@ -162238,8 +161860,8 @@ AnnotationAssertion( "XAO:0000272") AnnotationAssertion( "neuronames:1566") AnnotationAssertion(Annotation( "XAO:0000272") "Jacobson's organ") -AnnotationAssertion(Annotation( ) "organon vomeronasale") -AnnotationAssertion(Annotation( "Wikipedia:Vomeronasal_organ") Annotation( ) "organum vomeronasale") +AnnotationAssertion(Annotation( ) "organon vomeronasale") +AnnotationAssertion(Annotation( "Wikipedia:Vomeronasal_organ") Annotation( ) "organum vomeronasale") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "VHOG:0000665") "VNO") AnnotationAssertion( "organ of Jacobsen") @@ -162282,9 +161904,9 @@ AnnotationAssertion( "Wikipedia:Posterior_horn_of_spinal_cord") AnnotationAssertion( "ZFA:0000649") AnnotationAssertion( "neuronames:1686") -AnnotationAssertion(Annotation( "FMA:256530") Annotation( "FMA:TA") Annotation( ) "columna grisea posterior medullae spinalis") +AnnotationAssertion(Annotation( "FMA:256530") Annotation( "FMA:TA") Annotation( ) "columna grisea posterior medullae spinalis") AnnotationAssertion(Annotation( "ZFA:0000649") "cornu dorsale") -AnnotationAssertion(Annotation( "Wikipedia:Posterior_horn_of_spinal_cord") Annotation( ) "cornu posterius medullae spinalis") +AnnotationAssertion(Annotation( "Wikipedia:Posterior_horn_of_spinal_cord") Annotation( ) "cornu posterius medullae spinalis") AnnotationAssertion(Annotation( "FMA:256530") "dorsal gray column of spinal cord") AnnotationAssertion(Annotation( "BIRNLEX:2667") "dorsal gray horn") AnnotationAssertion(Annotation( "FMA:256530") "dorsal gray matter of spinal cord") @@ -162336,7 +161958,7 @@ AnnotationAssertion(Annotation( "FMA:256541") "anterior gray horn of spinal cord") AnnotationAssertion( "anterior grey column of spinal cord") AnnotationAssertion(Annotation( "BIRNLEX:2668") "anterior horn") -AnnotationAssertion(Annotation( "FMA:256541") Annotation( "FMA:TA") Annotation( ) "columna grisea anterior medullae spinalis") +AnnotationAssertion(Annotation( "FMA:256541") Annotation( "FMA:TA") Annotation( ) "columna grisea anterior medullae spinalis") AnnotationAssertion(Annotation( "BIRNLEX:2668") "spinal cord anterior horn") AnnotationAssertion( "spinal cord ventral horn") AnnotationAssertion(Annotation( "FMA:256541") "ventral gray column of spinal cord") @@ -162350,7 +161972,7 @@ AnnotationAssertion( "Wikipedia:Anterior_horn_of_spinal_cord") "anterior column") AnnotationAssertion(Annotation( "Wikipedia:Anterior_horn_of_spinal_cord") "anterior column of the spinal cord") AnnotationAssertion(Annotation( "Wikipedia:Anterior_horn_of_spinal_cord") "anterior horn (spinal cord)") -AnnotationAssertion(Annotation( "Wikipedia:Anterior_horn_of_spinal_cord") Annotation( ) "cornu anterius medullae spinalis") +AnnotationAssertion(Annotation( "Wikipedia:Anterior_horn_of_spinal_cord") Annotation( ) "cornu anterius medullae spinalis") AnnotationAssertion(Annotation( "BAMS:VH") "ventral horn of the spinal cord") AnnotationAssertion(Annotation( "VHOG:0001288") Annotation( ) "ventral horns spinal cord") AnnotationAssertion( "UBERON:0002257") @@ -162389,7 +162011,7 @@ AnnotationAssertion(Annotation( "FMA:5980") "sensory root of spinal nerve") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:drt") "dorsal roots") -AnnotationAssertion(Annotation( "Wikipedia:Posterior_root_of_spinal_nerve") Annotation( ) "radix posterior") +AnnotationAssertion(Annotation( "Wikipedia:Posterior_root_of_spinal_nerve") Annotation( ) "radix posterior") AnnotationAssertion(Annotation( "BTO:0000360") "radix posterior nervi spinalis") AnnotationAssertion(Annotation( "BTO:0000360") "root dorsali nervi spinalis") AnnotationAssertion(Annotation( "BTO:0000360") "root sensoria nervi spinalis") @@ -162447,8 +162069,8 @@ AnnotationAssertion( "BIRNLEX:1137") "neuronames:279") AnnotationAssertion(Annotation( "Wikipedia:Olfactory_bulb") "bulbus olfactorius") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Olfactory_bulb") Annotation( ) "bulbus olfactorius") -AnnotationAssertion(Annotation( "NeuroNames:279") Annotation( ) "bulbus olfactorius (Morgagni)") +AnnotationAssertion(Annotation( "Wikipedia:Olfactory_bulb") Annotation( ) "bulbus olfactorius") +AnnotationAssertion(Annotation( "NeuroNames:279") Annotation( ) "bulbus olfactorius (Morgagni)") AnnotationAssertion(Annotation( "ZFA:0000402") "olfactory lobe") AnnotationAssertion(Annotation( "NeuroNames:279") "olfactory lobe (Barr & Kiernan)") AnnotationAssertion( "UBERON:0002264") @@ -162495,9 +162117,9 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BTO:0003647") "olfactory peduncle") AnnotationAssertion(Annotation( "NeuroNames:283") "olfactory stalk") -AnnotationAssertion(Annotation( "NeuroNames:283") Annotation( ) "pedunclulus olfactorius") -AnnotationAssertion(Annotation( "NeuroNames:283") Annotation( ) "tractus olfactorium") -AnnotationAssertion(Annotation( "BTO:0003647") Annotation( "Wikipedia:Olfactory_tract") Annotation( ) "tractus olfactorius") +AnnotationAssertion(Annotation( "NeuroNames:283") Annotation( ) "pedunclulus olfactorius") +AnnotationAssertion(Annotation( "NeuroNames:283") Annotation( ) "tractus olfactorium") +AnnotationAssertion(Annotation( "BTO:0003647") Annotation( "Wikipedia:Olfactory_tract") Annotation( ) "tractus olfactorius") AnnotationAssertion( "UBERON:0002265") AnnotationAssertion( ) AnnotationAssertion( ) @@ -162514,7 +162136,7 @@ AnnotationAssertion( "fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint") AnnotationAssertion( "AAO:0010180") AnnotationAssertion( "BTO:0001772") -AnnotationAssertion( "FBbt:00005158") +AnnotationAssertion(Annotation( ) "FBbt:00005158") AnnotationAssertion( "FMA:77659") AnnotationAssertion( "VHOG:0000287") AnnotationAssertion( "XAO:0000273") @@ -162544,7 +162166,7 @@ AnnotationAssertion( "VHOG:0000623") AnnotationAssertion( "neuronames:2292") AnnotationAssertion( "hypothalamus periventricular zone") -AnnotationAssertion(Annotation( "FMA:77682") Annotation( "FMA:TA") Annotation( ) "zona periventricularis hypothalamicae") +AnnotationAssertion(Annotation( "FMA:77682") Annotation( "FMA:TA") Annotation( ) "zona periventricularis hypothalamicae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:PVZ") "periventricular zone of the hypothalamus") AnnotationAssertion( "UBERON:0002271") @@ -162562,7 +162184,7 @@ AnnotationAssertion( "MBA:467") AnnotationAssertion( "neuronames:2291") AnnotationAssertion( "hypothalamus medial zone") -AnnotationAssertion(Annotation( "FMA:77683") Annotation( "FMA:TA") Annotation( ) "zona medialis hypothalamicae") +AnnotationAssertion(Annotation( "FMA:77683") Annotation( "FMA:TA") Annotation( ) "zona medialis hypothalamicae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:MEZ") "hypothalamic medial zone behavioral control column") AnnotationAssertion(Annotation( "BAMS:MEZ") Annotation( "BAMS:MZ") "medial zone of the hypothalamus") @@ -162662,7 +162284,7 @@ AnnotationAssertion( "FMA:77832") "stria vascularis of cochlea") AnnotationAssertion(Annotation( "MP:0000048") "vascular stripe of cochlear duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0001819") Annotation( ) "stria vascularis ductus cochlearis") +AnnotationAssertion(Annotation( "BTO:0001819") Annotation( ) "stria vascularis ductus cochlearis") AnnotationAssertion(Annotation( "BTO:0001819") "vascular stria of cochlear duct") AnnotationAssertion( "UBERON:0002282") AnnotationAssertion( ) @@ -162845,6 +162467,7 @@ AnnotationAssertion( "EMAPA:35751") AnnotationAssertion( "FMA:79789") AnnotationAssertion( "MA:0002458") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D003053") AnnotationAssertion( "Wikipedia:Scala_media") AnnotationAssertion( "uberon") AnnotationAssertion( "cochlear duct") @@ -162876,7 +162499,7 @@ AnnotationAssertion( "ZFA:0005130") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Dorsal_mesentery") "dorsal mesogastrium") -AnnotationAssertion(Annotation( "Wikipedia:Dorsal_mesentery") Annotation( ) "mesenterium dorsale commune") +AnnotationAssertion(Annotation( "Wikipedia:Dorsal_mesentery") Annotation( ) "mesenterium dorsale commune") AnnotationAssertion( "UBERON:0002296") AnnotationAssertion( ) AnnotationAssertion( ) @@ -162915,14 +162538,14 @@ AnnotationAssertion( "ZFA:0001707") AnnotationAssertion(Annotation( "BIRNLEX:1565") "neuronames:236") AnnotationAssertion(Annotation( "ABA:BS") "brain stem") -AnnotationAssertion(Annotation( "Wikipedia:Brainstem") Annotation( ) "truncus encephali") +AnnotationAssertion(Annotation( "Wikipedia:Brainstem") Annotation( ) "truncus encephali") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:236") "accessory medullary lamina of pallidum") -AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamella pallidi incompleta") -AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamina medullaris accessoria") -AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamina medullaris incompleta pallidi") -AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamina pallidi incompleta") -AnnotationAssertion(Annotation( "BTO:0000146") Annotation( ) "truncus encephalicus") +AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamella pallidi incompleta") +AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamina medullaris accessoria") +AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamina medullaris incompleta pallidi") +AnnotationAssertion(Annotation( "NeuroNames:236") Annotation( ) "lamina pallidi incompleta") +AnnotationAssertion(Annotation( "BTO:0000146") Annotation( ) "truncus encephalicus") AnnotationAssertion( "UBERON:0002298") AnnotationAssertion( ) AnnotationAssertion( ) @@ -162961,7 +162584,7 @@ AnnotationAssertion(Annotation( "respiratory alveolus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000060") Annotation( ) "alveoli") -AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_alveolus") Annotation( ) "alveolus pulmonis") +AnnotationAssertion(Annotation( "Wikipedia:Pulmonary_alveolus") Annotation( ) "alveolus pulmonis") AnnotationAssertion(Annotation( ) "respiratory alveoli") AnnotationAssertion( "UBERON:0002299") AnnotationAssertion( ) @@ -163034,7 +162657,7 @@ AnnotationAssertion( "SCTID:362219002") AnnotationAssertion(Annotation( "ncithesaurus:Juxtaglomerular_Apparatus") "UMLS:C0022445") AnnotationAssertion( "Wikipedia:Juxtaglomerular_apparatus") -AnnotationAssertion(Annotation( ) "complexus juxtaglomerularis") +AnnotationAssertion(Annotation( ) "complexus juxtaglomerularis") AnnotationAssertion(Annotation( "MP:0002829") "juxtaglomerular complex") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002303") @@ -163181,8 +162804,8 @@ AnnotationAssertion(Annotation( "neuraxis fimbria") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:187") "fimbria (Vieussens)") -AnnotationAssertion(Annotation( "NeuroNames:187") Annotation( ) "fimbria fornicis") -AnnotationAssertion(Annotation( "NeuroNames:187") Annotation( "Wikipedia:Fimbria_of_hippocampus") Annotation( ) "fimbria hippocampi") +AnnotationAssertion(Annotation( "NeuroNames:187") Annotation( ) "fimbria fornicis") +AnnotationAssertion(Annotation( "NeuroNames:187") Annotation( "Wikipedia:Fimbria_of_hippocampus") Annotation( ) "fimbria hippocampi") AnnotationAssertion(Annotation( "NeuroNames:187") "fimbria of fornix") AnnotationAssertion(Annotation( "NeuroNames:187") "fimbria of the hippocampus") AnnotationAssertion( "UBERON:0002310") @@ -163210,8 +162833,8 @@ AnnotationAssertion(Annotation( "BIRNLEX:1444") "stratum pyramidale") AnnotationAssertion(Annotation( "BIRNLEX:1444") "stratum pyramidale hippocampi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:156") Annotation( ) "gyrus occipitalis inferior") -AnnotationAssertion(Annotation( "NeuroNames:156") Annotation( ) "gyrus occipitalis tertius") +AnnotationAssertion(Annotation( "NeuroNames:156") Annotation( ) "gyrus occipitalis inferior") +AnnotationAssertion(Annotation( "NeuroNames:156") Annotation( ) "gyrus occipitalis tertius") AnnotationAssertion( "hippocampal pyramidal cell layer") AnnotationAssertion( "hippocampal pyramidal layer") AnnotationAssertion( "hippocampus pyramidal cell layer") @@ -163253,8 +162876,8 @@ AnnotationAssertion( "tectum") AnnotationAssertion(Annotation( "BTO:0001793") "tectum mesencephali") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Midbrain_tectum") Annotation( ) "t. mesencephali") -AnnotationAssertion(Annotation( "NeuroNames:465") Annotation( ) "tectum mesencephalicum") +AnnotationAssertion(Annotation( "Wikipedia:Midbrain_tectum") Annotation( ) "t. mesencephali") +AnnotationAssertion(Annotation( "NeuroNames:465") Annotation( ) "tectum mesencephalicum") AnnotationAssertion(Annotation( "NeuroNames:465") "tectum of midbrain") AnnotationAssertion( "UBERON:0002314") AnnotationAssertion( ) @@ -163286,7 +162909,7 @@ AnnotationAssertion( "OBOL:automatic") "spinal cord gray matter") AnnotationAssertion( "spinal cord grey matter") AnnotationAssertion(Annotation( "OBOL:automatic") "spinal cord grey substance") -AnnotationAssertion(Annotation( "FMA:256580") Annotation( "FMA:TA") Annotation( ) "substantia grisea medullae spinalis") +AnnotationAssertion(Annotation( "FMA:256580") Annotation( "FMA:TA") Annotation( ) "substantia grisea medullae spinalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002315") AnnotationAssertion( ) @@ -163307,7 +162930,7 @@ AnnotationAssertion( "FMA:83929") AnnotationAssertion( "HBA:9218") AnnotationAssertion( "MA:0001135") -AnnotationAssertion( "MESH:D066127") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066127") AnnotationAssertion( "NCIT:C33892") AnnotationAssertion( "NLX:412") AnnotationAssertion( "NLXANAT:101177") @@ -163327,7 +162950,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "TAO:0000145") "CNS tracts and commissures") AnnotationAssertion(Annotation( "TAO:0002143") "CNS white matter") -AnnotationAssertion(Annotation( "Wikipedia:White_matter") Annotation( ) "substantia alba") +AnnotationAssertion(Annotation( "Wikipedia:White_matter") Annotation( ) "substantia alba") AnnotationAssertion(Annotation( "VHOG:0001764") "white mater") AnnotationAssertion( "UBERON:0002316") AnnotationAssertion( ) @@ -163353,7 +162976,7 @@ AnnotationAssertion(Annotation( "spinal cord white matter") AnnotationAssertion(Annotation( "OBOL:automatic") "spinal cord white matter of neuraxis") AnnotationAssertion(Annotation( "OBOL:automatic") "spinal cord white substance") -AnnotationAssertion(Annotation( "FMA:83945") Annotation( "FMA:TA") Annotation( ) "substantia alba medullae spinalis") +AnnotationAssertion(Annotation( "FMA:83945") Annotation( "FMA:TA") Annotation( ) "substantia alba medullae spinalis") AnnotationAssertion(Annotation( "OBOL:automatic") "white matter of neuraxis of spinal cord") AnnotationAssertion(Annotation( "OBOL:automatic") "white substance of spinal cord") AnnotationAssertion( "uberon") @@ -163456,7 +163079,7 @@ AnnotationAssertion(Annotation( "AEO:0000186") AnnotationAssertion( "BTO:0001707") AnnotationAssertion( "EHDAA2:0000267") -AnnotationAssertion( "FBbt:00005060") +AnnotationAssertion(Annotation( ) "FBbt:00005060") AnnotationAssertion( "FMA:85006") AnnotationAssertion( "NCIT:C25444") AnnotationAssertion( "RETIRED_EHDAA2:0003186") @@ -163591,7 +163214,7 @@ AnnotationAssertion( "embryonic notocord") AnnotationAssertion(Annotation( "ZFA:0000135") "notocord") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Notochord") Annotation( ) "notochorda") +AnnotationAssertion(Annotation( "Wikipedia:Notochord") Annotation( ) "notochorda") AnnotationAssertion( "UBERON:0002328") AnnotationAssertion( ) AnnotationAssertion( ) @@ -163648,7 +163271,7 @@ AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/The-neural-crest") "epithelial somite") AnnotationAssertion(Annotation( ) "somites") AnnotationAssertion( "somitic mesoderm") -AnnotationAssertion(Annotation( "Wikipedia:Somite") Annotation( ) "somitus") +AnnotationAssertion(Annotation( "Wikipedia:Somite") Annotation( ) "somitus") AnnotationAssertion( "UBERON:0002329") AnnotationAssertion( ) AnnotationAssertion( ) @@ -163712,12 +163335,12 @@ AnnotationAssertion( "SCTID:280644003") AnnotationAssertion(Annotation( "ncithesaurus:Umbilical_Cord") "UMLS:C0041633") AnnotationAssertion( "Wikipedia:Umbilical_cord") -AnnotationAssertion(Annotation( "MP:0012134") Annotation( ) "chorda umbilicalis") -AnnotationAssertion(Annotation( "MP:0012134") Annotation( ) "funiculus umbilicalis") +AnnotationAssertion(Annotation( "MP:0012134") Annotation( ) "chorda umbilicalis") +AnnotationAssertion(Annotation( "MP:0012134") Annotation( ) "funiculus umbilicalis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Umbilical_cord") "birth cord") AnnotationAssertion( "connecting stalk") -AnnotationAssertion(Annotation( "Wikipedia:Umbilical_cord") Annotation( ) "funiculus umbilicalis") +AnnotationAssertion(Annotation( "Wikipedia:Umbilical_cord") Annotation( ) "funiculus umbilicalis") AnnotationAssertion(Annotation( "BTO:0001415") "yolk stalk") AnnotationAssertion( "UBERON:0002331") AnnotationAssertion( ) @@ -163927,7 +163550,7 @@ AnnotationAssertion( "neuronames:1366") AnnotationAssertion(Annotation( "XAO:0000048") Annotation( ) "NC") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neural_crest") Annotation( ) "crista neuralis") +AnnotationAssertion(Annotation( "Wikipedia:Neural_crest") Annotation( ) "crista neuralis") AnnotationAssertion(Annotation( "VHOG:0000057") "neural crest material") AnnotationAssertion( "UBERON:0002342") AnnotationAssertion( ) @@ -164002,7 +163625,7 @@ AnnotationAssertion( "EHDAA:255") AnnotationAssertion( "EMAPA:16073") AnnotationAssertion( "EV:0100004") -AnnotationAssertion( "FBbt:00001057") +AnnotationAssertion(Annotation( ) "FBbt:00001057") AnnotationAssertion( "FMA:87657") AnnotationAssertion( "MAT:0000176") AnnotationAssertion( "MIAA:0000176") @@ -164016,7 +163639,7 @@ AnnotationAssertion( "neural ectoderm") AnnotationAssertion( "neuroectoderm") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neuroectoderm") Annotation( ) "epithelium tubi neuralis; neuroectoderma") +AnnotationAssertion(Annotation( "Wikipedia:Neuroectoderm") Annotation( ) "epithelium tubi neuralis; neuroectoderma") AnnotationAssertion( "neuaral ectoderm") AnnotationAssertion( "presumptive central nervous system") AnnotationAssertion(Annotation( "VHOG:0000150") "ventral neurogenic region") @@ -164160,10 +163783,10 @@ AnnotationAssertion(Annotation( "cardiac conduction system") AnnotationAssertion(Annotation( "GO:0003161") "cardiac impulse conducting system") AnnotationAssertion( "cardionector") -AnnotationAssertion(Annotation( "FMA:9476") Annotation( "FMA:TA") Annotation( ) "complexus stimulans cordis") +AnnotationAssertion(Annotation( "FMA:9476") Annotation( "FMA:TA") Annotation( ) "complexus stimulans cordis") AnnotationAssertion(Annotation( "GO:0003161") "heart conduction system") AnnotationAssertion(Annotation( "MA:0000094") "impulse conducting system") -AnnotationAssertion(Annotation( "FMA:9476") Annotation( "FMA:TA") Annotation( ) "systema conducente cordis") +AnnotationAssertion(Annotation( "FMA:9476") Annotation( "FMA:TA") Annotation( ) "systema conducente cordis") AnnotationAssertion( "uberon") AnnotationAssertion( "central conduction system") AnnotationAssertion( "UBERON:0002350") @@ -164202,7 +163825,7 @@ AnnotationAssertion(Annotation( "FMA:9477") "SA node") AnnotationAssertion(Annotation( "FMA:9477") "cardiac pacemaker") AnnotationAssertion(Annotation( "FMA:9477") "node of Keith-Flack") -AnnotationAssertion(Annotation( "FMA:9477") Annotation( "FMA:TA") Annotation( ) "nodus sinuatrialis") +AnnotationAssertion(Annotation( "FMA:9477") Annotation( "FMA:TA") Annotation( ) "nodus sinuatrialis") AnnotationAssertion(Annotation( "FMA:9477") "sinoatrial node") AnnotationAssertion(Annotation( "FMA:9477") "sinu-atrial node") AnnotationAssertion(Annotation( "FMA:9477") "sinuatrial nodal muscle tissue") @@ -164210,7 +163833,7 @@ AnnotationAssertion(Annotation( "FMA:9477") "sinus node") AnnotationAssertion(Annotation( "FMA:9477") "sinus node of Keith and Flack") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sinoatrial_node") Annotation( ) "nodus sinuatrialis") +AnnotationAssertion(Annotation( "Wikipedia:Sinoatrial_node") Annotation( ) "nodus sinuatrialis") AnnotationAssertion( "UBERON:0002351") AnnotationAssertion( ) AnnotationAssertion( ) @@ -164254,13 +163877,13 @@ AnnotationAssertion(Annotation( "FMA:9478") "Aschoff-Tawara node") AnnotationAssertion(Annotation( "FMA:9478") "atrioventricular nodal muscle tissue") AnnotationAssertion(Annotation( "FMA:9478") "node of Tawara") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "nodus atrioventricularis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "nodus atrioventricularis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35153") "A-V node") AnnotationAssertion(Annotation( "EMAPA:35153") "atrio-ventricular node") AnnotationAssertion(Annotation( "TAO:0005070") "atriovetricular node") AnnotationAssertion(Annotation( "ZFA:0005070") "downstream pacemaker") -AnnotationAssertion(Annotation( "Wikipedia:Atrioventricular_node") Annotation( ) "nodus atrioventricularis") +AnnotationAssertion(Annotation( "Wikipedia:Atrioventricular_node") Annotation( ) "nodus atrioventricularis") AnnotationAssertion( "UBERON:0002352") AnnotationAssertion( ) AnnotationAssertion( ) @@ -164299,7 +163922,7 @@ AnnotationAssertion( "FMA:9484") "atrioventricular bundle muscle tissue") AnnotationAssertion(Annotation( "FMA:9484") "atrioventricular fasciculus") AnnotationAssertion(Annotation( "FMA:9484") Annotation( "GO:0003166") "bundle of His") -AnnotationAssertion(Annotation( "Wikipedia:Bundle_of_His") Annotation( ) "fasciculus atrioventricularis") +AnnotationAssertion(Annotation( "Wikipedia:Bundle_of_His") Annotation( ) "fasciculus atrioventricularis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:35152") "A-V bundle") AnnotationAssertion( "UBERON:0002353") @@ -164330,7 +163953,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Purkinje_fiber") AnnotationAssertion(Annotation( "FMA:9492") Annotation( "MA:0000096") "Purkinje fiber") AnnotationAssertion(Annotation( "BTO:0001735") Annotation( "GO:0003165") "cardiac Purkinje fiber") -AnnotationAssertion(Annotation( ) "myofibra conducens cardiacus") +AnnotationAssertion(Annotation( ) "myofibra conducens cardiacus") AnnotationAssertion(Annotation( "Wikipedia:Purkinje_fiber") "subendocardial branch") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001735") "heart Purkinje fiber") @@ -164390,7 +164013,7 @@ AnnotationAssertion( "Wikipedia:Serous_pericardium") AnnotationAssertion(Annotation( "FMA:9582") "serous portion of pericardium") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Serous_pericardium") Annotation( ) "pericardium serosum") +AnnotationAssertion(Annotation( "Wikipedia:Serous_pericardium") Annotation( ) "pericardium serosum") AnnotationAssertion( "UBERON:0002357") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serous pericardium") @@ -164447,7 +164070,7 @@ AnnotationAssertion( "Wikipedia:Fibrous_pericardium") AnnotationAssertion( "fibrous portion of pericardium") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Fibrous_pericardium") Annotation( ) "pericardium fibrosum") +AnnotationAssertion(Annotation( "Wikipedia:Fibrous_pericardium") Annotation( ) "pericardium fibrosum") AnnotationAssertion( "UBERON:0002359") AnnotationAssertion( ) AnnotationAssertion( ) @@ -164638,7 +164261,7 @@ AnnotationAssertion( "lateral wall of tympanic cavity") AnnotationAssertion( "membranous wall of tympanic cavity") AnnotationAssertion( "myrinx") -AnnotationAssertion(Annotation( "FMA:9595") Annotation( "FMA:TA") Annotation( ) "paries membranaceus cavi tympani") +AnnotationAssertion(Annotation( "FMA:9595") Annotation( "FMA:TA") Annotation( ) "paries membranaceus cavi tympani") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Tympanic_membrane") "tympanum") AnnotationAssertion( "UBERON:0002364") @@ -164675,7 +164298,7 @@ AnnotationAssertion( "ncithesaurus:Exocrine_Gland") "UMLS:C0015282") AnnotationAssertion( "Wikipedia:Exocrine_gland") AnnotationAssertion(Annotation( "AEO:0000097") "ducted gland") -AnnotationAssertion(Annotation( "Wikipedia:Exocrine_gland") Annotation( ) "glandula exocrina") +AnnotationAssertion(Annotation( "Wikipedia:Exocrine_gland") Annotation( ) "glandula exocrina") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002365") AnnotationAssertion( ) @@ -164711,7 +164334,7 @@ AnnotationAssertion( "PMID:10668204") "male prostate") AnnotationAssertion( "prostate") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Prostate") Annotation( ) "prostata") +AnnotationAssertion(Annotation( "Wikipedia:Prostate") Annotation( ) "prostata") AnnotationAssertion( "UBERON:0002367") AnnotationAssertion( ) AnnotationAssertion( ) @@ -164746,7 +164369,7 @@ AnnotationAssertion(Annotation( "glandula endocrina") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Ductless_gland") "ductless gland") -AnnotationAssertion(Annotation( "Wikipedia:Endocrine_gland") Annotation( ) "glandulae endocrinae") +AnnotationAssertion(Annotation( "Wikipedia:Endocrine_gland") Annotation( ) "glandulae endocrinae") AnnotationAssertion( "UBERON:0002368") AnnotationAssertion( ) AnnotationAssertion( ) @@ -164782,8 +164405,8 @@ AnnotationAssertion( "Wikipedia:Adrenal_gland") AnnotationAssertion( "XAO:0000164") AnnotationAssertion( "galen:AdrenalGland") -AnnotationAssertion(Annotation( "Wikipedia:Adrenal_gland") Annotation( ) "glandula adrenalis") -AnnotationAssertion(Annotation( "Wikipedia:Adrenal_gland") Annotation( ) "glandula suprarenalis") +AnnotationAssertion(Annotation( "Wikipedia:Adrenal_gland") Annotation( ) "glandula adrenalis") +AnnotationAssertion(Annotation( "Wikipedia:Adrenal_gland") Annotation( ) "glandula suprarenalis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000047") "adrenal") AnnotationAssertion(Annotation( "BTO:0000047") "adrenal capsule") @@ -164894,8 +164517,8 @@ AnnotationAssertion( "Wikipedia:Bone_marrow") AnnotationAssertion( "XAO:0000123") AnnotationAssertion( "galen:BoneMarrow") -AnnotationAssertion(Annotation( "BTO:0000141") Annotation( "FMA:9608") Annotation( ) "medulla ossea") -AnnotationAssertion(Annotation( "BTO:0000141") Annotation( "Wikipedia:Bone_marrow") Annotation( ) "medulla ossium") +AnnotationAssertion(Annotation( "BTO:0000141") Annotation( "FMA:9608") Annotation( ) "medulla ossea") +AnnotationAssertion(Annotation( "BTO:0000141") Annotation( "Wikipedia:Bone_marrow") Annotation( ) "medulla ossium") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000141") "medulla of bone") AnnotationAssertion( "medullary bone") @@ -165081,7 +164704,7 @@ AnnotationAssertion( "Wikipedia:Trapezius_muscle") AnnotationAssertion( "trapezius") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Trapezius_muscle") Annotation( ) "musculus trapezius") +AnnotationAssertion(Annotation( "Wikipedia:Trapezius_muscle") Annotation( ) "musculus trapezius") AnnotationAssertion(Annotation( "Wikipedia:Trapezius_muscle") "spinotrapezius") AnnotationAssertion( "UBERON:0002380") AnnotationAssertion( ) @@ -165114,7 +164737,7 @@ AnnotationAssertion( "pectoralis major muscle") AnnotationAssertion( "pectoralis major muscle structure") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pectoralis_major_muscle") Annotation( ) "musculus pectoralis major") +AnnotationAssertion(Annotation( "Wikipedia:Pectoralis_major_muscle") Annotation( ) "musculus pectoralis major") AnnotationAssertion( "UBERON:0002381") AnnotationAssertion( ) AnnotationAssertion( ) @@ -165246,14 +164869,14 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "middle limb segment of brachial region") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "middle limb segment of forelimb") AnnotationAssertion(Annotation( "OBOL:automatic") "middle limb segment of proximal segment of free upper limb") -AnnotationAssertion(Annotation( "FMA:9663") Annotation( "FMA:TA") Annotation( ) "regio antebrachialis") +AnnotationAssertion(Annotation( "FMA:9663") Annotation( "FMA:TA") Annotation( ) "regio antebrachialis") AnnotationAssertion( "zeugopod of arm") AnnotationAssertion(Annotation( "OBOL:automatic") "zeugopod of brachial region") AnnotationAssertion( "zeugopod of forelimb") AnnotationAssertion(Annotation( "OBOL:automatic") "zeugopod of proximal segment of free upper limb") AnnotationAssertion(Annotation( "NCBITaxon:8782") Annotation( "OBOL:automatic") Annotation( ) "wing zeugopod") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Forearm") Annotation( ) "antebrachium") +AnnotationAssertion(Annotation( "Wikipedia:Forearm") Annotation( ) "antebrachium") AnnotationAssertion( "fore epipodium") AnnotationAssertion( "UBERON:0002386") AnnotationAssertion( ) @@ -165423,7 +165046,7 @@ AnnotationAssertion( "ZFA:0005658") AnnotationAssertion( "galen:Lymph") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lymph") Annotation( ) "lympha") +AnnotationAssertion(Annotation( "Wikipedia:Lymph") Annotation( ) "lympha") AnnotationAssertion( "UBERON:0002391") AnnotationAssertion( ) AnnotationAssertion( ) @@ -165455,7 +165078,7 @@ AnnotationAssertion(Annotation( "VHOG:0000664") AnnotationAssertion( "Wikipedia:Nasolacrimal_duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nasolacrimal_duct") Annotation( ) "d. nasolacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Nasolacrimal_duct") Annotation( ) "d. nasolacrimalis") AnnotationAssertion(Annotation( "PMID:30285382") "lacrimal duct") AnnotationAssertion(Annotation( "Wikipedia:Nasolacrimal_duct") "tear duct") AnnotationAssertion( "UBERON:0002392") @@ -165528,7 +165151,7 @@ AnnotationAssertion(Annotation( "AAO:0000633") AnnotationAssertion( "FMA:9710") AnnotationAssertion( "MA:0001496") -AnnotationAssertion( "MESH:D055172") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D055172") AnnotationAssertion( "NCIT:C33888") AnnotationAssertion( "SCTID:272678009") AnnotationAssertion( "TAO:0000308") @@ -165606,7 +165229,7 @@ AnnotationAssertion(Annotation( "VHOG:0001495") AnnotationAssertion( "Wikipedia:Parietal_pleura") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Parietal_pleura") Annotation( ) "pleura parietalis") +AnnotationAssertion(Annotation( "Wikipedia:Parietal_pleura") Annotation( ) "pleura parietalis") AnnotationAssertion( "UBERON:0002400") AnnotationAssertion( ) AnnotationAssertion( ) @@ -165630,8 +165253,8 @@ AnnotationAssertion( "SCTID:361997008") AnnotationAssertion(Annotation( "ncithesaurus:Visceral_Pleura") "UMLS:C0225776") AnnotationAssertion( "VHOG:0001496") -AnnotationAssertion(Annotation( "FMA:9734") Annotation( "FMA:TA") Annotation( ) "pleura pulmonalis") -AnnotationAssertion(Annotation( "Wikipedia:Visceral_pleura") Annotation( ) "pleura visceralis") +AnnotationAssertion(Annotation( "FMA:9734") Annotation( "FMA:TA") Annotation( ) "pleura pulmonalis") +AnnotationAssertion(Annotation( "Wikipedia:Visceral_pleura") Annotation( ) "pleura visceralis") AnnotationAssertion( "pleura visceralis (pulmonalis)") AnnotationAssertion( "pulmonary visceral pleura") AnnotationAssertion( "uberon") @@ -165667,10 +165290,10 @@ AnnotationAssertion( "ncithesaurus:Pleural_Cavity") "UMLS:C0178802") AnnotationAssertion( "VHOG:0000581") AnnotationAssertion( "Wikipedia:Pleural_cavity") -AnnotationAssertion(Annotation( "Wikipedia:Pleural_cavity") Annotation( ) "cavitas pleuralis") +AnnotationAssertion(Annotation( "Wikipedia:Pleural_cavity") Annotation( ) "cavitas pleuralis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pleural_cavity") Annotation( ) "cavitum pleuralae") -AnnotationAssertion(Annotation( "Wikipedia:Pleural_cavity") Annotation( ) "cavitum pleurale") +AnnotationAssertion(Annotation( "Wikipedia:Pleural_cavity") Annotation( ) "cavitum pleuralae") +AnnotationAssertion(Annotation( "Wikipedia:Pleural_cavity") Annotation( ) "cavitum pleurale") AnnotationAssertion( "UBERON:0002402") AnnotationAssertion( ) AnnotationAssertion( ) @@ -165797,7 +165420,7 @@ AnnotationAssertion(Annotation( "VHOG:0000537") AnnotationAssertion( "Wikipedia:Parietal_pericardium") AnnotationAssertion( "lamina parietalis (pericardii serosum)") -AnnotationAssertion(Annotation( "FMA:9870") Annotation( "FMA:TA") Annotation( ) "lamina parietalis pericardii") +AnnotationAssertion(Annotation( "FMA:9870") Annotation( "FMA:TA") Annotation( ) "lamina parietalis pericardii") AnnotationAssertion( "parietal layer of serous pericardium") AnnotationAssertion(Annotation( "VHOG:0000537") "parietal pericardium") AnnotationAssertion( "uberon") @@ -165815,7 +165438,7 @@ AnnotationAssertion(Annotation( "BTO:0001016") AnnotationAssertion( "FMA:9887") AnnotationAssertion( "MA:0002530") -AnnotationAssertion( "MESH:D000069236") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000069236") AnnotationAssertion( "Wikipedia:Pericardial_fluid") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002409") @@ -165842,6 +165465,7 @@ AnnotationAssertion( "EMAPA:16984") AnnotationAssertion( "FMA:65553") AnnotationAssertion( "GAID:706") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0002126") AnnotationAssertion( "MA:0000219") AnnotationAssertion( "MESH:D001341") AnnotationAssertion( "NCIT:C12673") @@ -165861,7 +165485,7 @@ AnnotationAssertion(Annotation( "visceral nervous system") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "ANS") -AnnotationAssertion(Annotation( "Wikipedia:Autonomic_nervous_system") Annotation( ) "divisio autonomica systematis nervosi peripherici") +AnnotationAssertion(Annotation( "Wikipedia:Autonomic_nervous_system") Annotation( ) "divisio autonomica systematis nervosi peripherici") AnnotationAssertion( "UBERON:0002410") AnnotationAssertion( ) AnnotationAssertion( ) @@ -165913,7 +165537,7 @@ AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0001189") Annotation( "TAO") Annotation( "ZFIN:curator") "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]") AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0000691") Annotation( "AAO") Annotation( "AAO:Pugener_and_Maglia_2008") "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]") AnnotationAssertion( "AAO:0000691") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006196") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006196") AnnotationAssertion( "CALOHA:TS-2352") AnnotationAssertion( "EFO:0001371") AnnotationAssertion( "EMAPA:32740") @@ -165958,7 +165582,7 @@ AnnotationAssertion( "galen:CervicalVertebra") AnnotationAssertion(Annotation( ) "cervical vertebrae") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cervical_vertebrae") Annotation( ) "vertebrae cervicales") +AnnotationAssertion(Annotation( "Wikipedia:Cervical_vertebrae") Annotation( ) "vertebrae cervicales") AnnotationAssertion( "UBERON:0002413") AnnotationAssertion( ) AnnotationAssertion( ) @@ -166014,7 +165638,7 @@ AnnotationAssertion( "EHDAA:6520") AnnotationAssertion( "EMAPA:17524") AnnotationAssertion( "EV:0100151") -AnnotationAssertion( "FBbt:00004969") +AnnotationAssertion(Annotation( ) "FBbt:00004969") AnnotationAssertion( "FMA:72979") AnnotationAssertion( "HAO:0000421") AnnotationAssertion( "MA:0000014") @@ -166034,7 +165658,7 @@ AnnotationAssertion( "body surface") AnnotationAssertion(Annotation( "MIAA:0000033") "dermal system") AnnotationAssertion( "external covering of organism") -AnnotationAssertion(Annotation( "Wikipedia:Integumentary_system") Annotation( ) "integumentum commune") +AnnotationAssertion(Annotation( "Wikipedia:Integumentary_system") Annotation( ) "integumentum commune") AnnotationAssertion(Annotation( "EHDAA2:0003154") "organism surface") AnnotationAssertion(Annotation( "BILA:0000118") "surface") AnnotationAssertion( "UBERON:0002416") @@ -166133,7 +165757,7 @@ AnnotationAssertion( "FMA:71878") AnnotationAssertion( "MA:0000146") AnnotationAssertion( "SCTID:110485007") -AnnotationAssertion(Annotation( "FMA:71878") Annotation( "FMA:TA") Annotation( ) "glandulae cutis") +AnnotationAssertion(Annotation( "FMA:71878") Annotation( "FMA:TA") Annotation( ) "glandulae cutis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:71878") "set of skin glands") AnnotationAssertion(Annotation( ) "skin glands") @@ -166158,7 +165782,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "basal ganglia") AnnotationAssertion(Annotation( "MA:0000184") "basal nucleus") -AnnotationAssertion(Annotation( "Wikipedia:Basal_ganglia") Annotation( ) "nuclei basales") +AnnotationAssertion(Annotation( "Wikipedia:Basal_ganglia") Annotation( ) "nuclei basales") AnnotationAssertion( "UBERON:0002420") AnnotationAssertion( ) AnnotationAssertion( ) @@ -166196,7 +165820,7 @@ AnnotationAssertion( "BTO:0000601") Annotation( "GO:0021766") Annotation( ) "hippocampus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0000189") "archipallium") -AnnotationAssertion(Annotation( "NeuroNames:177") Annotation( ) "formatio hippocampi") +AnnotationAssertion(Annotation( "NeuroNames:177") Annotation( ) "formatio hippocampi") AnnotationAssertion(Annotation( "BTO:0000601") "major hippocampus") AnnotationAssertion(Annotation( "MA:0000189") "primal cortex") AnnotationAssertion(Annotation( "NeuroNames:177") "seahorse") @@ -166257,7 +165881,7 @@ AnnotationAssertion(Annotation( "VHOG:0000006") "rhombencephalic ventricle") AnnotationAssertion(Annotation( "BTO:0003426") Annotation( ) "ventricle of hindbrain") AnnotationAssertion(Annotation( "BTO:0003426") "ventricle of rhombencephalon") -AnnotationAssertion(Annotation( "Wikipedia:Fourth_ventricle") Annotation( ) "ventriculus quartus") +AnnotationAssertion(Annotation( "Wikipedia:Fourth_ventricle") Annotation( ) "ventriculus quartus") AnnotationAssertion( "UBERON:0002422") AnnotationAssertion( ) AnnotationAssertion( ) @@ -166353,7 +165977,7 @@ AnnotationAssertion( "SCTID:243955001") AnnotationAssertion( "VHOG:0000538") AnnotationAssertion( "Wikipedia:Visceral_pericardium") -AnnotationAssertion(Annotation( "Wikipedia:Epicardium") Annotation( ) "lamina visceralis pericardii serosi") +AnnotationAssertion(Annotation( "Wikipedia:Epicardium") Annotation( ) "lamina visceralis pericardii serosi") AnnotationAssertion( "serous visceral pericardium") AnnotationAssertion( "visceral lamina of serous pericardium") AnnotationAssertion( "visceral layer of serous pericardium") @@ -166488,7 +166112,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BIRNLEX:1672") "caudate putamen") AnnotationAssertion(Annotation( "MA:0000891") "corpus striatum") -AnnotationAssertion(Annotation( "NeuroNames:225") Annotation( ) "corpus striatum (Zilles)") +AnnotationAssertion(Annotation( "NeuroNames:225") Annotation( ) "corpus striatum (Zilles)") AnnotationAssertion(Annotation( "BIRNLEX:1672") "dorsal striatum") AnnotationAssertion(Annotation( "BTO:0000418") "striated nucleus") AnnotationAssertion( "UBERON:0002435") @@ -166528,7 +166152,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "hemisphere white matter") AnnotationAssertion(Annotation( "FMA:256174") "region of cerebral white matter") -AnnotationAssertion(Annotation( "NeuroNames:189") Annotation( ) "substantia medullaris cerebri") +AnnotationAssertion(Annotation( "NeuroNames:189") Annotation( ) "substantia medullaris cerebri") AnnotationAssertion( "UBERON:0002437") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebral hemisphere white matter") @@ -166563,7 +166187,7 @@ AnnotationAssertion( "OBOL:automatic") "choroid coat blood vessel") AnnotationAssertion(Annotation( "OBOL:automatic") "choroidea blood vessel") AnnotationAssertion(Annotation( "OBOL:automatic") "posterior uvea blood vessel") -AnnotationAssertion(Annotation( "FMA:76550") Annotation( "FMA:TA") Annotation( ) "vasa sanguinea choroideae") +AnnotationAssertion(Annotation( "FMA:76550") Annotation( "FMA:TA") Annotation( ) "vasa sanguinea choroideae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:76550") "set of choroid blood vessels") AnnotationAssertion( "UBERON:0002443") @@ -166592,7 +166216,7 @@ AnnotationAssertion(Annotation( "VHOG:0000444") AnnotationAssertion( "Wikipedia:Lens_(anatomy)#Lens_fibers") AnnotationAssertion( "XAO:0004096") -AnnotationAssertion(Annotation( "FMA:76827") Annotation( "FMA:TA") Annotation( ) "fibrae lentis") +AnnotationAssertion(Annotation( "FMA:76827") Annotation( "FMA:TA") Annotation( ) "fibrae lentis") AnnotationAssertion( "lens fibers") AnnotationAssertion( "lens fibers set") AnnotationAssertion( "lens fibres") @@ -166625,7 +166249,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:24485") "knee bone") AnnotationAssertion(Annotation( "Wikipedia:Patella") "knee cap") -AnnotationAssertion(Annotation( "Wikipedia:Patella") Annotation( ) "patella") +AnnotationAssertion(Annotation( "Wikipedia:Patella") Annotation( ) "patella") AnnotationAssertion( "UBERON:0002446") AnnotationAssertion( ) AnnotationAssertion( ) @@ -166694,10 +166318,10 @@ AnnotationAssertion( "BTO:0003433") "endometrial gland") AnnotationAssertion( "endometrial mucuous gland") AnnotationAssertion( "endometrium gland") -AnnotationAssertion(Annotation( "FMA:71647") Annotation( "FMA:TA") Annotation( ) "glandulae uterinae") +AnnotationAssertion(Annotation( "FMA:71647") Annotation( "FMA:TA") Annotation( ) "glandulae uterinae") AnnotationAssertion( "uterine gland") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Uterine_glands") Annotation( ) "glandulae uterinae") +AnnotationAssertion(Annotation( "Wikipedia:Uterine_glands") Annotation( ) "glandulae uterinae") AnnotationAssertion( "UBERON:0002451") AnnotationAssertion( ) AnnotationAssertion( ) @@ -166728,8 +166352,8 @@ AnnotationAssertion( "MA:0001982") Annotation( ) "internal mammary artery") AnnotationAssertion( "internal thoracic mammary artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Internal_thoracic_artery") Annotation( ) "arteria mammaria interna") -AnnotationAssertion(Annotation( "Wikipedia:Internal_thoracic_artery") Annotation( ) "arteria thoracica interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_thoracic_artery") Annotation( ) "arteria mammaria interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_thoracic_artery") Annotation( ) "arteria thoracica interna") AnnotationAssertion(Annotation( "EMAPA:18617") "mammary artery") AnnotationAssertion( "UBERON:0002456") AnnotationAssertion( ) @@ -166797,7 +166421,7 @@ AnnotationAssertion(Annotation( "MA:0002263") AnnotationAssertion( "SCTID:12683000") AnnotationAssertion( "Wikipedia:Vesical_veins") -AnnotationAssertion(Annotation( "FMA:70911") Annotation( "FMA:TA") Annotation( ) "venae vesicales") +AnnotationAssertion(Annotation( "FMA:70911") Annotation( "FMA:TA") Annotation( ) "venae vesicales") AnnotationAssertion(Annotation( ) "vesical veins") AnnotationAssertion( "vesical veins set") AnnotationAssertion( "uberon") @@ -166861,7 +166485,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "lymphatic circulatory system") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "lymphatic drainage system") -AnnotationAssertion(Annotation( "Wikipedia:Lymphoid_system") Annotation( ) "systema lymphoideum") +AnnotationAssertion(Annotation( "Wikipedia:Lymphoid_system") Annotation( ) "systema lymphoideum") AnnotationAssertion( "UBERON:0002465") AnnotationAssertion( ) AnnotationAssertion( ) @@ -166901,7 +166525,7 @@ AnnotationAssertion( "EMAPA:26981") AnnotationAssertion( "FMA:62996") AnnotationAssertion( "MA:0002680") -AnnotationAssertion( "MESH:D000071041") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000071041") AnnotationAssertion( "NCIT:C32538") AnnotationAssertion( "SCTID:362127004") AnnotationAssertion(Annotation( "ncithesaurus:Esophageal_Mucosa") "UMLS:C0227176") @@ -166909,7 +166533,7 @@ AnnotationAssertion( "esophageal mucous membrane") AnnotationAssertion(Annotation( "FMA:62996") "esophagus mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "esophagus mucous membrane") -AnnotationAssertion(Annotation( "FMA:62996") Annotation( "FMA:TA") Annotation( ) "lamina muscularis mucosae oesophageae") +AnnotationAssertion(Annotation( "FMA:62996") Annotation( "FMA:TA") Annotation( ) "lamina muscularis mucosae oesophageae") AnnotationAssertion(Annotation( "OBOL:automatic") "mucosa of esophagus") AnnotationAssertion(Annotation( "OBOL:automatic") "mucosa of oesophagus") AnnotationAssertion( "mucous membrane of esophagus") @@ -166918,7 +166542,7 @@ AnnotationAssertion(Annotation( "oesophagus mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "oesophagus mucous membrane") AnnotationAssertion( "tunica mucosa esophagi") -AnnotationAssertion(Annotation( "FMA:62996") Annotation( "FMA:TA") Annotation( ) "tunica mucosa oesophageae") +AnnotationAssertion(Annotation( "FMA:62996") Annotation( "FMA:TA") Annotation( ) "tunica mucosa oesophageae") AnnotationAssertion( "tunica mucosa oesophagi") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:62996") Annotation( ) "muscularis mucosae of oesophagus") @@ -167047,13 +166671,13 @@ AnnotationAssertion( "Wikipedia:Lesser_wing_of_sphenoid_bone") AnnotationAssertion( "ZFA:0000253") AnnotationAssertion(Annotation( "FMA:52869") "ala minor (os sphenoidale)") -AnnotationAssertion(Annotation( "FMA:52869") Annotation( "FMA:TA") Annotation( ) "ala minor ossis sphenoidalis") +AnnotationAssertion(Annotation( "FMA:52869") Annotation( "FMA:TA") Annotation( ) "ala minor ossis sphenoidalis") AnnotationAssertion(Annotation( "FMA:52869") "ingrassia's process") AnnotationAssertion(Annotation( "FMA:52869") "lesser wing of sphenoid") AnnotationAssertion(Annotation( "FMA:52869") "lesser wing of sphenoidal bone") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "orbitosphenoid bone") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lesser_wing_of_sphenoid_bone") Annotation( ) "alae parvae") +AnnotationAssertion(Annotation( "Wikipedia:Lesser_wing_of_sphenoid_bone") Annotation( ) "alae parvae") AnnotationAssertion(Annotation( "MA:0002773") "lesser wing of sphenoid bone") AnnotationAssertion(Annotation( "ZFA:0000253") Annotation( ) "orbitosphenoids") AnnotationAssertion( "UBERON:0002478") @@ -167092,15 +166716,15 @@ AnnotationAssertion(Annotation( "BIRNLEX:1595") "neuronames:353") AnnotationAssertion( "lateral geniculate complex, dorsal part") AnnotationAssertion(Annotation( "NeuroNames:353") "lateral geniculate nucleus, dorsal part") -AnnotationAssertion(Annotation( "FMA:62214") Annotation( "FMA:TA") Annotation( ) "nucleus dorsalis corporis geniculati lateralis") +AnnotationAssertion(Annotation( "FMA:62214") Annotation( "FMA:TA") Annotation( ) "nucleus dorsalis corporis geniculati lateralis") AnnotationAssertion(Annotation( "BIRNLEX:1595") "nucleus geniculatus lateralis pars dorsalis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:353") Annotation( ) "corpus geniculatum laterale (Hassler)") +AnnotationAssertion(Annotation( "NeuroNames:353") Annotation( ) "corpus geniculatum laterale (Hassler)") AnnotationAssertion(Annotation( "MA:0002775") "dorsal nucleus of lateral geniculate body") AnnotationAssertion(Annotation( "NeuroNames:353") "dorsal part of the lateral geniculate complex") AnnotationAssertion(Annotation( "BAMS:LGd") "lateral geniculate nucleus dorsal part") -AnnotationAssertion(Annotation( "NeuroNames:353") Annotation( ) "nucleus corporis geniculati lateralis, pars dorsalis") -AnnotationAssertion(Annotation( "NeuroNames:353") Annotation( ) "nucleus geniculatus lateralis dorsalis") +AnnotationAssertion(Annotation( "NeuroNames:353") Annotation( ) "nucleus corporis geniculati lateralis, pars dorsalis") +AnnotationAssertion(Annotation( "NeuroNames:353") Annotation( ) "nucleus geniculatus lateralis dorsalis") AnnotationAssertion( "UBERON:0002479") AnnotationAssertion(rdfs:label "dorsal lateral geniculate nucleus") SubClassOf( ) @@ -167212,10 +166836,10 @@ AnnotationAssertion( "frontal suture of skull") AnnotationAssertion( "median frontal suture") AnnotationAssertion(Annotation( "Wikipedia:Frontal_suture") "sutura frontalis") -AnnotationAssertion(Annotation( "FMA:52989") Annotation( "FMA:TA") Annotation( ) "sutura metopica") +AnnotationAssertion(Annotation( "FMA:52989") Annotation( "FMA:TA") Annotation( ) "sutura metopica") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0002796") "metopic suture") -AnnotationAssertion(Annotation( "Wikipedia:Frontal_suture") Annotation( ) "sutura frontalis") +AnnotationAssertion(Annotation( "Wikipedia:Frontal_suture") Annotation( ) "sutura frontalis") AnnotationAssertion( "UBERON:0002490") AnnotationAssertion( ) AnnotationAssertion( ) @@ -167293,9 +166917,9 @@ AnnotationAssertion(Annotation( "MP:0004353") "deltoid impression") AnnotationAssertion(Annotation( "FMA:23418") "deltoid tuberosity") AnnotationAssertion(Annotation( "FMA:23418") "deltoid tuberosity of humerus") -AnnotationAssertion(Annotation( "FMA:23418") Annotation( "FMA:TA") Annotation( ) "tuberositas deltoidea") +AnnotationAssertion(Annotation( "FMA:23418") Annotation( "FMA:TA") Annotation( ) "tuberositas deltoidea") AnnotationAssertion( "tuberositas deltoidea (corpus humeri)") -AnnotationAssertion(Annotation( "Wikipedia:Deltoid_tuberosity") Annotation( ) "tuberositas deltoidea humeri") +AnnotationAssertion(Annotation( "Wikipedia:Deltoid_tuberosity") Annotation( ) "tuberositas deltoidea humeri") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "AAO:0000736") "crista ventralis humeri") AnnotationAssertion(Annotation( "MP:0004353") "deltoid process") @@ -167340,7 +166964,7 @@ AnnotationAssertion( "OBOL:automatic") "epithelial tissue of iris") AnnotationAssertion(Annotation( "OBOL:automatic") "epithelium of iris") AnnotationAssertion(Annotation( "FMA:58517") "epithelium pigmentosum (iris)") -AnnotationAssertion(Annotation( "FMA:58517") Annotation( "FMA:TA") Annotation( ) "epithelium pigmentosum iridis") +AnnotationAssertion(Annotation( "FMA:58517") Annotation( "FMA:TA") Annotation( ) "epithelium pigmentosum iridis") AnnotationAssertion(Annotation( "OBOL:automatic") "iris epithelial tissue") AnnotationAssertion(Annotation( "FMA:58517") "iris epithelium") AnnotationAssertion(Annotation( "FMA:58517") "pigmented epithelium of iris") @@ -167386,7 +167010,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Mesenteric_lymph_nodes") AnnotationAssertion( "mesenteric node") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0000767") Annotation( ) "nodi lymphoidei mesenterici") +AnnotationAssertion(Annotation( "BTO:0000767") Annotation( ) "nodi lymphoidei mesenterici") AnnotationAssertion( "UBERON:0002509") AnnotationAssertion( ) AnnotationAssertion( ) @@ -167409,11 +167033,11 @@ AnnotationAssertion( "MA:0002831") "ventricle trabecula carnea") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "GO:0060347") "cardiac trabecula") -AnnotationAssertion(Annotation( "Wikipedia:Trabeculae_carneae") Annotation( ) "columnae carneae") +AnnotationAssertion(Annotation( "Wikipedia:Trabeculae_carneae") Annotation( ) "columnae carneae") AnnotationAssertion(Annotation( "GO:0060347") "heart trabecula") AnnotationAssertion( "trabecula of heart") AnnotationAssertion(Annotation( ) "trabeculae carneae") -AnnotationAssertion(Annotation( "Wikipedia:Trabeculae_carneae") Annotation( ) "trabeculae carneae cordis") +AnnotationAssertion(Annotation( "Wikipedia:Trabeculae_carneae") Annotation( ) "trabeculae carneae cordis") AnnotationAssertion(Annotation( "MA:0002831") "ventricular trabecula") AnnotationAssertion( "UBERON:0002511") AnnotationAssertion( ) @@ -167546,7 +167170,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Base_of_skull") AnnotationAssertion( "base of cranium") AnnotationAssertion(Annotation( "FMA:52801") "base of skull") -AnnotationAssertion(Annotation( "FMA:52801") Annotation( "FMA:TA") Annotation( "Wikipedia:Base_of_skull") Annotation( ) "basis cranii") +AnnotationAssertion(Annotation( "FMA:52801") Annotation( "FMA:TA") Annotation( "Wikipedia:Base_of_skull") Annotation( ) "basis cranii") AnnotationAssertion(Annotation( "FMA:52801") Annotation( "MA:0002840") "cranial base") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002517") @@ -167602,7 +167226,7 @@ AnnotationAssertion( "SCTID:27197004") AnnotationAssertion( "Wikipedia:Elastic_fiber") AnnotationAssertion( "elastic connective tissue") -AnnotationAssertion(Annotation( ) "textus connectivus elasticus") +AnnotationAssertion(Annotation( ) "textus connectivus elasticus") AnnotationAssertion( "elastic fiber") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002521") @@ -167626,7 +167250,7 @@ AnnotationAssertion( "ncithesaurus:Tunica_Media") "UMLS:C0162867") AnnotationAssertion( "Wikipedia:Tunica_media") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "BTO:0002011") Annotation( "Wikipedia:Tunica_media") Annotation( ) "tunica media vasorum") +AnnotationAssertion(Annotation( "BTO:0002011") Annotation( "Wikipedia:Tunica_media") Annotation( ) "tunica media vasorum") AnnotationAssertion( "UBERON:0002522") AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "May be composed of smooth muscle and elastic tissue") @@ -167724,7 +167348,7 @@ AnnotationAssertion( "EHDAA:4475") AnnotationAssertion( "EHDAA:6522") AnnotationAssertion( "EMAPA:18425") -AnnotationAssertion( "FBbt:00100317") +AnnotationAssertion(Annotation( ) "FBbt:00100317") AnnotationAssertion( "FMA:7146") AnnotationAssertion( "FMA:86294") AnnotationAssertion( "HAO:0000375") @@ -167740,7 +167364,7 @@ AnnotationAssertion( "http://orcid.org/0000-0002-6601-2165") "glandular organ") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0000522") "Druese") -AnnotationAssertion(Annotation( "BTO:0000522") Annotation( "Wikipedia:Gland") Annotation( ) "glandula") +AnnotationAssertion(Annotation( "BTO:0000522") Annotation( "Wikipedia:Gland") Annotation( ) "glandula") AnnotationAssertion( "UBERON:0002530") AnnotationAssertion( ) AnnotationAssertion( ) @@ -167767,7 +167391,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "blastocyst") AnnotationAssertion(Annotation( "MP:0003886") "ectoblast") -AnnotationAssertion(Annotation( "Wikipedia:Epiblast") Annotation( ) "epiblastus") +AnnotationAssertion(Annotation( "Wikipedia:Epiblast") Annotation( ) "epiblastus") AnnotationAssertion(Annotation( "VHOG:0000243") "primitive ectoderm") AnnotationAssertion( "UBERON:0002532") AnnotationAssertion( ) @@ -167818,7 +167442,7 @@ AnnotationAssertion(Annotation( "this term should be ceded to the arthropod anatomy ontology") AnnotationAssertion( "BTO:0001237") AnnotationAssertion( "EFO:0000939") -AnnotationAssertion( "FBbt:00007152") +AnnotationAssertion(Annotation( ) "FBbt:00007152") AnnotationAssertion( "HAO:0000933") AnnotationAssertion( "MAT:0000163") AnnotationAssertion( "MIAA:0000163") @@ -167881,7 +167505,7 @@ AnnotationAssertion( ) "pharyngeal arches") AnnotationAssertion(Annotation( "BTO:0001785") Annotation( "MP:0002884") "branchial arch") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_arch") Annotation( ) "arcus pharyngei") +AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_arch") Annotation( ) "arcus pharyngei") AnnotationAssertion( "visceral arch") AnnotationAssertion( "UBERON:0002539") AnnotationAssertion( ) @@ -167911,7 +167535,7 @@ AnnotationAssertion( "AAO:0000975") AnnotationAssertion( "EFO:0000941") AnnotationAssertion( "MAT:0000249") -AnnotationAssertion( "MESH:D053403") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D053403") AnnotationAssertion( "MIAA:0000249") AnnotationAssertion( "TAO:0000034") AnnotationAssertion( "VHOG:0001243") @@ -168001,9 +167625,9 @@ AnnotationAssertion(Annotation( "larval") AnnotationAssertion( "AEO:0000126") AnnotationAssertion( "BTO:0000707") -AnnotationAssertion( "FBbt:00001727") +AnnotationAssertion(Annotation( ) "FBbt:00001727") AnnotationAssertion( "HAO:0000459") -AnnotationAssertion( "MESH:D007814") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D007814") AnnotationAssertion( "TAO:0002048") AnnotationAssertion( "Wikipedia:Larva") AnnotationAssertion(Annotation( "TAO:0002048") "larval organism") @@ -168083,13 +167707,13 @@ AnnotationAssertion( "TAO:0006000") AnnotationAssertion(Annotation( "BIRNLEX:1015") "UMLS:C0020669") AnnotationAssertion(Annotation( "BIRNLEX:1015") "neuronames:392") -AnnotationAssertion(Annotation( "FMA:62028") Annotation( "FMA:TA") Annotation( ) "area hypothalamica intermedia") +AnnotationAssertion(Annotation( "FMA:62028") Annotation( "FMA:TA") Annotation( ) "area hypothalamica intermedia") AnnotationAssertion(Annotation( "FMA:62028") "intermediate hypothalamic area") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "TAO:0006000") "intermediate hypothalamus") AnnotationAssertion(Annotation( "MESH:A08.186.211.730.385.357.352") "medial hypothalamus") AnnotationAssertion(Annotation( "MESH:A08.186.211.730.385.357.352") "middle hypothalamus") -AnnotationAssertion(Annotation( "NeuroNames:392") Annotation( ) "regio hypothalamica intermedia") +AnnotationAssertion(Annotation( "NeuroNames:392") Annotation( ) "regio hypothalamica intermedia") AnnotationAssertion( "UBERON:0002555") AnnotationAssertion(rdfs:comment ")") AnnotationAssertion(rdfs:label "intermediate hypothalamic region") @@ -168135,7 +167759,7 @@ AnnotationAssertion( "DHBA:12155") AnnotationAssertion( "FMA:72719") AnnotationAssertion( "HBA:4219") -AnnotationAssertion( "MESH:D065726") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D065726") AnnotationAssertion( "SCTID:279215006") AnnotationAssertion(Annotation( "BIRNLEX:1128") "UMLS:C0458337") AnnotationAssertion( "Wikipedia:Limbic_lobe") @@ -168146,8 +167770,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:834") "fornicate convolution") AnnotationAssertion(Annotation( "NeuroNames:834") "fornicate lobe") -AnnotationAssertion(Annotation( "NeuroNames:834") Annotation( ) "gyrus fornicatus") -AnnotationAssertion(Annotation( "Wikipedia:Limbic_lobe") Annotation( ) "lobus limbicus") +AnnotationAssertion(Annotation( "NeuroNames:834") Annotation( ) "gyrus fornicatus") +AnnotationAssertion(Annotation( "Wikipedia:Limbic_lobe") Annotation( ) "lobus limbicus") AnnotationAssertion( "UBERON:0002600") AnnotationAssertion( ) AnnotationAssertion( ) @@ -168180,7 +167804,7 @@ AnnotationAssertion( "BIRNLEX:1151") "neuronames:720") AnnotationAssertion(Annotation( "FMA:72240") "cochlear nuclei") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cochlear_nuclei") Annotation( ) "nuclei cochleares") +AnnotationAssertion(Annotation( "Wikipedia:Cochlear_nuclei") Annotation( ) "nuclei cochleares") AnnotationAssertion( "UBERON:0002610") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cochlear nuclear complex") @@ -168226,14 +167850,14 @@ AnnotationAssertion(Annotation( "BIRNLEX:1201") "UMLS:C1289554") AnnotationAssertion( "Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus") AnnotationAssertion(Annotation( "BIRNLEX:1201") "neuronames:379") -AnnotationAssertion(Annotation( "FMA:62324") Annotation( "FMA:TA") Annotation( ) "nucleus preopticus periventricularis") +AnnotationAssertion(Annotation( "FMA:62324") Annotation( "FMA:TA") Annotation( ) "nucleus preopticus periventricularis") AnnotationAssertion(Annotation( "FMA:62324") "periventricular preoptic nucleus") AnnotationAssertion(Annotation( "FMA:62324") "preoptic periventricular hypothalamic nucleus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:379") "dorsal periventricular hypothalamic nucleus") -AnnotationAssertion(Annotation( "NeuroNames:379") Annotation( ) "nucleus periventricularis hypothalami, pars dorsalis") -AnnotationAssertion(Annotation( "NeuroNames:379") Annotation( ) "nucleus periventricularis praeopticus") -AnnotationAssertion(Annotation( "NeuroNames:379") Annotation( ) "nucleus periventricularis preopticus") +AnnotationAssertion(Annotation( "NeuroNames:379") Annotation( ) "nucleus periventricularis hypothalami, pars dorsalis") +AnnotationAssertion(Annotation( "NeuroNames:379") Annotation( ) "nucleus periventricularis praeopticus") +AnnotationAssertion(Annotation( "NeuroNames:379") Annotation( ) "nucleus periventricularis preopticus") AnnotationAssertion(Annotation( "BAMS:PVpo") "periventricular hypothalamic nucleus, preoptic part") AnnotationAssertion(Annotation( "NeuroNames:379") "periventricular nucleus, anterior portion") AnnotationAssertion( "UBERON:0002622") @@ -168256,7 +167880,7 @@ AnnotationAssertion( "BAMS:MnPO") AnnotationAssertion( "BIRNLEX:1208") AnnotationAssertion( "BM:MPO") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006168") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006168") AnnotationAssertion( "DHBA:13063") AnnotationAssertion( "FMA:62323") AnnotationAssertion( "HBA:4548") @@ -168266,8 +167890,8 @@ AnnotationAssertion( "BIRNLEX:1208") "neuronames:378") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:378") "median preoptic nucleus (Loo)") -AnnotationAssertion(Annotation( "NeuroNames:378") Annotation( ) "nucleus praeopticus medianus") -AnnotationAssertion(Annotation( "NeuroNames:378") Annotation( ) "nucleus preopticus medianus") +AnnotationAssertion(Annotation( "NeuroNames:378") Annotation( ) "nucleus praeopticus medianus") +AnnotationAssertion(Annotation( "NeuroNames:378") Annotation( ) "nucleus preopticus medianus") AnnotationAssertion(Annotation( "NeuroNames:378") "periventricular nucleus, preventricular portion") AnnotationAssertion( "UBERON:0002625") AnnotationAssertion( ) @@ -168301,7 +167925,7 @@ AnnotationAssertion(Annotation( "FMA:61845") "septal nuclei") AnnotationAssertion(Annotation( "MA:0002978") "septal nucleus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Septal_nuclei") Annotation( ) "nuclei septales") +AnnotationAssertion(Annotation( "Wikipedia:Septal_nuclei") Annotation( ) "nuclei septales") AnnotationAssertion( "UBERON:0002663") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "septal nuclear complex") @@ -168329,7 +167953,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BAMS:AVPe") "anterior ventral periventricular nucleus of hypothalamus") AnnotationAssertion(Annotation( "BAMS:AVPV") "anteroventral periventricular nucleus of the hypothalamus") -AnnotationAssertion(Annotation( "NeuroNames:382") Annotation( ) "nucleus periventricularis anteroventralis") +AnnotationAssertion(Annotation( "NeuroNames:382") Annotation( ) "nucleus periventricularis anteroventralis") AnnotationAssertion(Annotation( "NeuroNames:382") "ventral periventricular hypothalamic nucleus") AnnotationAssertion( "UBERON:0002690") AnnotationAssertion(rdfs:label "anteroventral periventricular nucleus") @@ -168354,6 +167978,7 @@ AnnotationAssertion( "FMA:62023") AnnotationAssertion( "MA:0000868") AnnotationAssertion( "MBA:1008") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005829") AnnotationAssertion( "SCTID:361550004") AnnotationAssertion( "Wikipedia:Metathalamus") AnnotationAssertion(Annotation( "BIRNLEX:1461") "neuronames:351") @@ -168361,7 +167986,7 @@ AnnotationAssertion(Annotation( "MA:0000868") "geniculate thalamic group") AnnotationAssertion(Annotation( "BIRNLEX:1461") "nuclei metathalami") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Metathalamus") Annotation( ) "corpora geniculata") +AnnotationAssertion(Annotation( "Wikipedia:Metathalamus") Annotation( ) "corpora geniculata") AnnotationAssertion(Annotation( "BAMS:GENd") "geniculate group of dorsal thalamus") AnnotationAssertion(Annotation( "BAMS:GENd") "geniculate thalamic nuclear group (metathalamus)") AnnotationAssertion( "UBERON:0002704") @@ -168381,7 +168006,7 @@ AnnotationAssertion( "BIRNLEX:1464") AnnotationAssertion( "BM:CST") AnnotationAssertion( "BM:Me-PyT") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006132") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006132") AnnotationAssertion( "DHBA:12776") AnnotationAssertion( "DMBA:17756") AnnotationAssertion( "EMAPA:36600") @@ -168397,13 +168022,13 @@ AnnotationAssertion( "neuronames:1320") AnnotationAssertion(Annotation( "BIRNLEX:1464") "neuronames:800") AnnotationAssertion(Annotation( "NeuroNames:1320") "corticospinal fibers") -AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( ) "fasciculus cerebro-spinalis") -AnnotationAssertion(Annotation( "NeuroNames:800") Annotation( ) "fasciculus pyramidalis") -AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( ) "fibrae corticospinales") +AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( ) "fasciculus cerebro-spinalis") +AnnotationAssertion(Annotation( "NeuroNames:800") Annotation( ) "fasciculus pyramidalis") +AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( ) "fibrae corticospinales") AnnotationAssertion(Annotation( "NeuroNames:800") "pyramid (Willis)") -AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( ) "tractus cortico-spinalis") -AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( "Wikipedia:Corticospinal_tract") Annotation( ) "tractus corticospinalis") -AnnotationAssertion(Annotation( "NeuroNames:800") Annotation( ) "tractus pyramidalis") +AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( ) "tractus cortico-spinalis") +AnnotationAssertion(Annotation( "NeuroNames:1320") Annotation( "Wikipedia:Corticospinal_tract") Annotation( ) "tractus corticospinalis") +AnnotationAssertion(Annotation( "NeuroNames:800") Annotation( ) "tractus pyramidalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002707") AnnotationAssertion( ) @@ -168423,6 +168048,7 @@ AnnotationAssertion( "BIRNLEX:1499") AnnotationAssertion( "FMA:71166") AnnotationAssertion( "MA:0003081") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066193") AnnotationAssertion( "NCIT:C12892") AnnotationAssertion( "SCTID:180960003") AnnotationAssertion(Annotation( "BIRNLEX:1499") Annotation( "ncithesaurus:Cervical_Spinal_Cord") "UMLS:C0581619") @@ -168431,8 +168057,8 @@ AnnotationAssertion( "FMA:71166") "cervical segment of spinal cord") AnnotationAssertion(Annotation( "FMA:71166") "cervical segments of spinal cord [1-8]") AnnotationAssertion(Annotation( "FMA:71166") "cervical spinal cord") -AnnotationAssertion(Annotation( "FMA:71166") Annotation( "FMA:TA") Annotation( ) "pars cervicalis medullae spinalis") -AnnotationAssertion(Annotation( "FMA:71166") Annotation( "FMA:TA") Annotation( ) "segmenta cervicalia medullae spinalis [1-8") +AnnotationAssertion(Annotation( "FMA:71166") Annotation( "FMA:TA") Annotation( ) "pars cervicalis medullae spinalis") +AnnotationAssertion(Annotation( "FMA:71166") Annotation( "FMA:TA") Annotation( ) "segmenta cervicalia medullae spinalis [1-8") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002726") AnnotationAssertion( ) @@ -168451,7 +168077,7 @@ AnnotationAssertion( "FMA:72499") AnnotationAssertion( "neuronames:605") AnnotationAssertion(Annotation( "FMA:72499") "central part of vestibulocochlear nerve") -AnnotationAssertion(Annotation( "FMA:72499") Annotation( "FMA:TA") Annotation( ) "fibrae nervi statoacustici") +AnnotationAssertion(Annotation( "FMA:72499") Annotation( "FMA:TA") Annotation( ) "fibrae nervi statoacustici") AnnotationAssertion(Annotation( "DHBA:12868") "root of vestibulocochlear nerve") AnnotationAssertion(Annotation( "FMA:72499") "statoacoustic nerve fibers") AnnotationAssertion(Annotation( "FMA:72499") "vestibulocochlear nerve fibers") @@ -168475,13 +168101,13 @@ AnnotationAssertion( "EMAPA:35164") AnnotationAssertion( "FMA:77700") AnnotationAssertion( "HBA:4300") -AnnotationAssertion( "MESH:D066187") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066187") AnnotationAssertion( "PBA:128012976") AnnotationAssertion( "Wikipedia:Basal_forebrain") AnnotationAssertion(Annotation( "BIRNLEX:1560") "neuronames:1997") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:1997") "basal forebrain area") -AnnotationAssertion(Annotation( "Wikipedia:Basal_forebrain") Annotation( ) "pars basalis telencephali") +AnnotationAssertion(Annotation( "Wikipedia:Basal_forebrain") Annotation( ) "pars basalis telencephali") AnnotationAssertion( "UBERON:0002743") AnnotationAssertion( ) AnnotationAssertion( ) @@ -168521,8 +168147,8 @@ AnnotationAssertion(Annotation( "FMA:62029") "mammillary region") AnnotationAssertion(Annotation( "FMA:62029") "posterior hypothalamus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:411") Annotation( ) "hypothalamus posterior") -AnnotationAssertion(Annotation( "NeuroNames:411") Annotation( ) "regio hypothalamica posterior") +AnnotationAssertion(Annotation( "NeuroNames:411") Annotation( ) "hypothalamus posterior") +AnnotationAssertion(Annotation( "NeuroNames:411") Annotation( ) "regio hypothalamica posterior") AnnotationAssertion( "UBERON:0002770") AnnotationAssertion(rdfs:label "posterior hypothalamic region") SubClassOf( ) @@ -168694,8 +168320,8 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "VHOG:0000696") "acoustic ganglion") AnnotationAssertion(Annotation( "BIRNLEX:2564") "auditory ganglion") -AnnotationAssertion(Annotation( "NeuroNames:496") Annotation( ) "nucleus nervi oculomotorii ventrolateralis") -AnnotationAssertion(Annotation( "NeuroNames:496") Annotation( ) "nucleus nervi oculomotorii, pars ventralis") +AnnotationAssertion(Annotation( "NeuroNames:496") Annotation( ) "nucleus nervi oculomotorii ventrolateralis") +AnnotationAssertion(Annotation( "NeuroNames:496") Annotation( ) "nucleus nervi oculomotorii, pars ventralis") AnnotationAssertion(Annotation( "VHOG:0000696") "statoacoustic VIII ganglion") AnnotationAssertion(Annotation( "XAO:0004142") Annotation( ) "vestibulocochlear ganglia") AnnotationAssertion( "UBERON:0002827") @@ -168730,9 +168356,9 @@ AnnotationAssertion(Annotation( "FMA:54621") "ventral cochlear nucleus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:722") "accessory cochlear nucleus") -AnnotationAssertion(Annotation( "NeuroNames:722") Annotation( ) "nucleus acustici accessorici") -AnnotationAssertion(Annotation( "NeuroNames:722") Annotation( ) "nucleus cochlearis anterior") -AnnotationAssertion(Annotation( "NeuroNames:722") Annotation( ) "nucleus cochlearis ventralis") +AnnotationAssertion(Annotation( "NeuroNames:722") Annotation( ) "nucleus acustici accessorici") +AnnotationAssertion(Annotation( "NeuroNames:722") Annotation( ) "nucleus cochlearis anterior") +AnnotationAssertion(Annotation( "NeuroNames:722") Annotation( ) "nucleus cochlearis ventralis") AnnotationAssertion(Annotation( "NeuroNames:722") "ventral cochlear nuclei") AnnotationAssertion(Annotation( "BAMS:VCO") "ventral coclear nucleus") AnnotationAssertion(Annotation( "NeuroNames:722") "ventral division of cochlear nucleus") @@ -168770,8 +168396,8 @@ AnnotationAssertion(Annotation( "tuberculum acousticum") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:DCO") "dorsal coclear nucleus") -AnnotationAssertion(Annotation( "NeuroNames:721") Annotation( ) "nucleus cochlearis dorsalis") -AnnotationAssertion(Annotation( "Wikipedia:Dorsal_cochlear_nucleus") Annotation( ) "nucleus cochlearis posterior") +AnnotationAssertion(Annotation( "NeuroNames:721") Annotation( ) "nucleus cochlearis dorsalis") +AnnotationAssertion(Annotation( "Wikipedia:Dorsal_cochlear_nucleus") Annotation( ) "nucleus cochlearis posterior") AnnotationAssertion( "UBERON:0002829") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dorsal cochlear nucleus") @@ -168795,7 +168421,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "NeuroNames:723") "anterior part of the ventral cochlear nucleus") AnnotationAssertion(Annotation( "NeuroNames:723") "anterior ventral cochlear nucleus") -AnnotationAssertion(Annotation( "NeuroNames:723") Annotation( ) "nucleus cochlearis anteroventralis") +AnnotationAssertion(Annotation( "NeuroNames:723") Annotation( ) "nucleus cochlearis anteroventralis") AnnotationAssertion(Annotation( "NeuroNames:723") "ventral cochlear nucleus, anterior part") AnnotationAssertion(Annotation( "NeuroNames:723") "ventral coclear nucleus anterior part") AnnotationAssertion( "UBERON:0002830") @@ -168816,7 +168442,7 @@ AnnotationAssertion(Annotation( "BIRNLEX:2573") "neuronames:724") AnnotationAssertion(Annotation( "BIRNLEX:2573") "posterior part of anterior cochlear nucleus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:724") Annotation( ) "nucleus cochlearis posteroventralis") +AnnotationAssertion(Annotation( "NeuroNames:724") Annotation( ) "nucleus cochlearis posteroventralis") AnnotationAssertion(Annotation( "NeuroNames:724") "posterior part of the ventral cochlear nucleus") AnnotationAssertion(Annotation( "NeuroNames:724") "posterior ventral cochlear nucleus") AnnotationAssertion(Annotation( "NeuroNames:724") "ventral cochlear nucleus, posterior part") @@ -168899,12 +168525,12 @@ AnnotationAssertion(Annotation( "MA:0001039") "hypoglossal XII nucleus") AnnotationAssertion(Annotation( "FMA:54505") "hypoglossal nerve nucleus") AnnotationAssertion(Annotation( "FMA:54505") "hypoglossal nucleus") -AnnotationAssertion(Annotation( "FMA:54505") Annotation( "FMA:TA") Annotation( ) "nucleus nervi hypoglossi") +AnnotationAssertion(Annotation( "FMA:54505") Annotation( "FMA:TA") Annotation( ) "nucleus nervi hypoglossi") AnnotationAssertion(Annotation( "FMA:54505") "nucleus of hypoglossal nerve") AnnotationAssertion(Annotation( "FMA:54505") "twelfth cranial nerve nucleus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:757") Annotation( ) "nucleus hypoglossalis") -AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_nucleus") Annotation( ) "nucleus nervi hypoglossi") +AnnotationAssertion(Annotation( "NeuroNames:757") Annotation( ) "nucleus hypoglossalis") +AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_nucleus") Annotation( ) "nucleus nervi hypoglossi") AnnotationAssertion( "UBERON:0002871") AnnotationAssertion( ) AnnotationAssertion( ) @@ -168936,8 +168562,8 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "NeuroNames:242") "nucleus of the lateral olfactory tract") AnnotationAssertion(Annotation( "BAMS:LOT") "nucleus of the olfactory tract") -AnnotationAssertion(Annotation( "NeuroNames:242") Annotation( ) "nucleus of tractus olfactorius lateralis") -AnnotationAssertion(Annotation( "NeuroNames:242") Annotation( ) "nucleus striae olfactoriae lateralis") +AnnotationAssertion(Annotation( "NeuroNames:242") Annotation( ) "nucleus of tractus olfactorius lateralis") +AnnotationAssertion(Annotation( "NeuroNames:242") Annotation( ) "nucleus striae olfactoriae lateralis") AnnotationAssertion( "UBERON:0002893") AnnotationAssertion(rdfs:comment "part of amygdala in FMA but this leads to inconsistency when combined with ABA partitions") AnnotationAssertion(rdfs:label "nucleus of lateral olfactory tract") @@ -169001,7 +168627,7 @@ AnnotationAssertion( "BIRNLEX:4035") "rolandic fissure") AnnotationAssertion(Annotation( "BIRNLEX:4035") "sulcus centralis") AnnotationAssertion(Annotation( "BIRNLEX:4035") "sulcus centralis (rolandi)") -AnnotationAssertion(Annotation( "BIRNLEX:4035") Annotation( "Wikipedia:Central_sulcus") Annotation( ) "sulcus centralis cerebri") +AnnotationAssertion(Annotation( "BIRNLEX:4035") Annotation( "Wikipedia:Central_sulcus") Annotation( ) "sulcus centralis cerebri") AnnotationAssertion( "sulcus of Rolando") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0002916") @@ -169104,7 +168730,7 @@ AnnotationAssertion( "NLX:42439") AnnotationAssertion( "neuronames:2123") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "PMID:17765709") Annotation( ) "CA4") +AnnotationAssertion(Annotation( "PMID:17765709") Annotation( ) "CA4") AnnotationAssertion(Annotation( "BAMS:PoDG") "polymorph layer of the dentate gyrus") AnnotationAssertion( "UBERON:0002928") AnnotationAssertion(rdfs:label "dentate gyrus polymorphic layer") @@ -169132,7 +168758,7 @@ AnnotationAssertion(Annotation( "cerebellum granule layer") AnnotationAssertion(Annotation( "BIRNLEX:779") "granule cell layer of cerebellar cortex") AnnotationAssertion(Annotation( "BTO:0004425") "stratum granulosum cerebelli") -AnnotationAssertion(Annotation( "FMA:83140") Annotation( "FMA:TA") Annotation( ) "stratum granulosum corticis cerebelli") +AnnotationAssertion(Annotation( "FMA:83140") Annotation( "FMA:TA") Annotation( ) "stratum granulosum corticis cerebelli") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0004425") "granular layer of cerebellum") AnnotationAssertion( "UBERON:0002956") @@ -169164,9 +168790,9 @@ AnnotationAssertion(Annotation( "GO:0021679") "cerebellar molecular layer") AnnotationAssertion( "cerebellum molecular cell layer") AnnotationAssertion( "cerebellum molecular layer") -AnnotationAssertion(Annotation( "FMA:83897") Annotation( "FMA:TA") Annotation( ) "stratum moleculare corticis cerebelli") +AnnotationAssertion(Annotation( "FMA:83897") Annotation( "FMA:TA") Annotation( ) "stratum moleculare corticis cerebelli") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:366") Annotation( ) "fasciculi thalami") +AnnotationAssertion(Annotation( "NeuroNames:366") Annotation( ) "fasciculi thalami") AnnotationAssertion(Annotation( "NeuroNames:366") "thalamic fiber tracts") AnnotationAssertion( "UBERON:0002974") AnnotationAssertion( ) @@ -169196,12 +168822,12 @@ AnnotationAssertion(Annotation( "cerebellum Purkinje cell layer") AnnotationAssertion( "cerebellum Purkinje layer") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nuclei reticulares (thalami)") -AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nucleus reticularis") -AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nucleus reticulatus (thalami)") -AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nucleus thalamicus reticularis") +AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nuclei reticulares (thalami)") +AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nucleus reticularis") +AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nucleus reticulatus (thalami)") +AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "nucleus thalamicus reticularis") AnnotationAssertion(Annotation( "NeuroNames:365") "reticular nucleus thalamus (Arnold)") -AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "reticulatum thalami (Hassler)") +AnnotationAssertion(Annotation( "NeuroNames:365") Annotation( ) "reticulatum thalami (Hassler)") AnnotationAssertion( "UBERON:0002979") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Purkinje cell layer of cerebellar cortex") @@ -169218,7 +168844,7 @@ AnnotationAssertion( "DHBA:12416") AnnotationAssertion( "FMA:71108") AnnotationAssertion( "HBA:9135") -AnnotationAssertion( "MESH:D065821") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D065821") AnnotationAssertion( "SCTID:362401009") AnnotationAssertion(Annotation( "BIRNLEX:923") "UMLS:C0228426") AnnotationAssertion( "Wikipedia:Pontine_tegmentum") @@ -169227,11 +168853,11 @@ AnnotationAssertion( "FMA:71108") "dorsal portion of pons") AnnotationAssertion(Annotation( "FMA:71108") "tegmental portion of pons") AnnotationAssertion(Annotation( "FMA:71108") "tegmentum of pons") -AnnotationAssertion(Annotation( "FMA:71108") Annotation( "FMA:TA") Annotation( ) "tegmentum pontis") +AnnotationAssertion(Annotation( "FMA:71108") Annotation( "FMA:TA") Annotation( ) "tegmentum pontis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:557") Annotation( ) "pars dorsalis pontis") -AnnotationAssertion(Annotation( "NeuroNames:557") Annotation( ) "pars posterior pontis") -AnnotationAssertion(Annotation( "Wikipedia:Pontine_tegmentum") Annotation( ) "tegmentum pontis") +AnnotationAssertion(Annotation( "NeuroNames:557") Annotation( ) "pars dorsalis pontis") +AnnotationAssertion(Annotation( "NeuroNames:557") Annotation( ) "pars posterior pontis") +AnnotationAssertion(Annotation( "Wikipedia:Pontine_tegmentum") Annotation( ) "tegmentum pontis") AnnotationAssertion( "UBERON:0003023") AnnotationAssertion( ) AnnotationAssertion( ) @@ -169274,8 +168900,8 @@ AnnotationAssertion( "BIRNLEX:966") Annotation( "ncithesaurus:Thoracic_Spinal_Cord") "UMLS:C0581620") AnnotationAssertion( "Wikipedia:Thoracic_spinal_cord") AnnotationAssertion( "neuronames:1718") -AnnotationAssertion(Annotation( "FMA:71167") Annotation( "FMA:TA") Annotation( ) "pars thoracica medullae spinalis") -AnnotationAssertion(Annotation( "FMA:71167") Annotation( "FMA:TA") Annotation( ) "segmenta thoracica medullae spinalis [1-12]") +AnnotationAssertion(Annotation( "FMA:71167") Annotation( "FMA:TA") Annotation( ) "pars thoracica medullae spinalis") +AnnotationAssertion(Annotation( "FMA:71167") Annotation( "FMA:TA") Annotation( ) "segmenta thoracica medullae spinalis [1-12]") AnnotationAssertion(Annotation( "FMA:71167") "thoracic region of spinal cord") AnnotationAssertion(Annotation( "FMA:71167") "thoracic segment of spinal cord") AnnotationAssertion(Annotation( "FMA:71167") "thoracic segments of spinal cord [1-12]") @@ -169301,7 +168927,7 @@ AnnotationAssertion(Annotation( "FMA:72501") "trigeminal nerve fibers") AnnotationAssertion(Annotation( "FMA:72501") "trigeminal nerve tract") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:607") Annotation( ) "fibrae nervi trigemini") +AnnotationAssertion(Annotation( "NeuroNames:607") Annotation( ) "fibrae nervi trigemini") AnnotationAssertion( "UBERON:0003041") AnnotationAssertion(rdfs:label "trigeminal nerve fibers") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -169311,7 +168937,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "Wikipedia:Nasal_placode") Annotation( "XAO:0000005") "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity.") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000186") Annotation( "VHOG") Annotation( "ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43") Annotation( "http://bgee.unil.ch/") "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (2) neurogenic placodes (...).[well established][VHOG]") AnnotationAssertion( "AAO:0011076") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006222") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006222") AnnotationAssertion( "EFO:0003420") AnnotationAssertion( "EHDAA2:0001232") AnnotationAssertion( "EHDAA:1504") @@ -169323,8 +168949,8 @@ AnnotationAssertion( "XAO:0000005") AnnotationAssertion( "ZFA:0000048") AnnotationAssertion(Annotation( ) "olfactory placodes") -AnnotationAssertion(Annotation( ) "placoda nasalis") -AnnotationAssertion(Annotation( ) "placoda olfactoria") +AnnotationAssertion(Annotation( ) "placoda nasalis") +AnnotationAssertion(Annotation( ) "placoda olfactoria") AnnotationAssertion( "uberon") AnnotationAssertion( "nasal I placode") AnnotationAssertion( "nasal placode") @@ -169420,7 +169046,7 @@ AnnotationAssertion(Annotation( "In mice, the first non-basal layer formed at ~E9.5; it is a temporary structure composed of simple squamous epithelium that serves as the first barrier to the embryo's physical environment, exists throughout the entire keratinocyte stratification process, and sheds off at ~E17, when it is replaced by corneocytes[MP]") AnnotationAssertion( "In some mammals, Eyelid Fusion is thought to be driven by a population of cells which are derived from the periderm, the outermost layer of the developing epidermis") AnnotationAssertion( "Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html)") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0003377") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0003377") AnnotationAssertion( "EHDAA2:0001846") AnnotationAssertion( "EHDAA:6538") AnnotationAssertion( "FMA:295662") @@ -169515,7 +169141,7 @@ AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000082") Annotation( "VHOG") Annotation( "http://bgee.unil.ch/") "The first-formed kidney duct, which drains the kidney of most anamniotes and becomes the ductus deferens of male amniotes. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-3, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]") AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000082") Annotation( "VHOG") Annotation( "ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.686") Annotation( "http://bgee.unil.ch/") "(...) in all craniates, the archinephric duct develops in embryogeny.[well established][VHOG]") AnnotationAssertion( "AAO:0011088") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0005991") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0005991") AnnotationAssertion( "NCIT:C34279") AnnotationAssertion( "SCTID:361406002") AnnotationAssertion( "TAO:0000150") @@ -169526,7 +169152,7 @@ AnnotationAssertion( "ZFA:0000150") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "VHOG:0000082") "archinephric duct") -AnnotationAssertion(Annotation( "Wikipedia:Pronephric_duct") Annotation( ) "ductus pronephricus") +AnnotationAssertion(Annotation( "Wikipedia:Pronephric_duct") Annotation( ) "ductus pronephricus") AnnotationAssertion(Annotation( "ZFA:0000150") Annotation( ) "pronephric ducts") AnnotationAssertion( "UBERON:0003060") AnnotationAssertion( ) @@ -169627,7 +169253,7 @@ AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/The-neural-crest") "intermediate mesenchyme") AnnotationAssertion(Annotation( "EMAPA:16178") "intermediate plate") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "intermediate plate mesoderm") -AnnotationAssertion(Annotation( "Wikipedia:Intermediate_mesoderm") Annotation( ) "mesenchyma intermedium") +AnnotationAssertion(Annotation( "Wikipedia:Intermediate_mesoderm") Annotation( ) "mesenchyma intermedium") AnnotationAssertion( "UBERON:0003064") AnnotationAssertion( ) AnnotationAssertion( ) @@ -169662,7 +169288,7 @@ AnnotationAssertion( "XAO:0000098") AnnotationAssertion( "ZFA:0001611") AnnotationAssertion( "2nd pharyngeal arch") -AnnotationAssertion(Annotation( "Wikipedia:Second_pharyngeal_arch") Annotation( ) "arcus pharyngeus secundus") +AnnotationAssertion(Annotation( "Wikipedia:Second_pharyngeal_arch") Annotation( ) "arcus pharyngeus secundus") AnnotationAssertion(Annotation( ) "branchial arch 2") AnnotationAssertion(Annotation( "XAO:0000098") "hyoid arch") AnnotationAssertion( "pharyngeal arch 2") @@ -169742,7 +169368,7 @@ AnnotationAssertion( "Wikipedia:Otic_placode") AnnotationAssertion( "XAO:0000223") AnnotationAssertion( "ZFA:0000138") -AnnotationAssertion(Annotation( ) "placoda otica") +AnnotationAssertion(Annotation( ) "placoda otica") AnnotationAssertion( "uberon") AnnotationAssertion( "auditory placode") AnnotationAssertion( "ear placode") @@ -169863,7 +169489,7 @@ AnnotationAssertion( "ZFA:0000122") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0000122") Annotation( ) "lens placodes") -AnnotationAssertion(Annotation( "Wikipedia:Lens_placode") Annotation( ) "placoda lentis") +AnnotationAssertion(Annotation( "Wikipedia:Lens_placode") Annotation( ) "placoda lentis") AnnotationAssertion( "UBERON:0003073") AnnotationAssertion( ) AnnotationAssertion( ) @@ -169887,7 +169513,7 @@ AnnotationAssertion(Annotation( "2012-09-17") Annotation( "VHOG:0000082") Annotation( "VHOG") Annotation( "ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.686") Annotation( "http://bgee.unil.ch/") "(...) in all craniates, the archinephric duct develops in embryogeny.[well established][VHOG]") AnnotationAssertion( "In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.") AnnotationAssertion( "AAO:0000637") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0005990") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0005990") AnnotationAssertion( "EHDAA2:0001243") AnnotationAssertion( "EHDAA:1590") AnnotationAssertion( "EMAPA:16577") @@ -169905,7 +169531,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Wolffian_duct") "Leydig's duct") AnnotationAssertion(Annotation( "VHOG:0000082") Annotation( "Wikipedia:Wolffian_duct") "archinephric duct") -AnnotationAssertion(Annotation( "Wikipedia:Mesonephric_duct") Annotation( ) "ductus mesonephricus; ductus Wolffi") +AnnotationAssertion(Annotation( "Wikipedia:Mesonephric_duct") Annotation( ) "ductus mesonephricus; ductus Wolffi") AnnotationAssertion( "renal duct") AnnotationAssertion( "UBERON:0003074") AnnotationAssertion( ) @@ -169931,7 +169557,7 @@ AnnotationAssertion( "EHDAA:902") AnnotationAssertion( "EMAPA:35593") AnnotationAssertion( "FMA:293879") -AnnotationAssertion( "MESH:D054258") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D054258") AnnotationAssertion( "NCIT:C34225") AnnotationAssertion( "RETIRED_EHDAA2:0001252") AnnotationAssertion( "TAO:0000132") @@ -169942,7 +169568,7 @@ AnnotationAssertion( "ZFA:0000132") AnnotationAssertion( "neuronames:1362") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neural_plate") Annotation( ) "lamina neuralis") +AnnotationAssertion(Annotation( "Wikipedia:Neural_plate") Annotation( ) "lamina neuralis") AnnotationAssertion( "presumptive central nervous system") AnnotationAssertion( "UBERON:0003075") AnnotationAssertion( ) @@ -169994,7 +169620,7 @@ AnnotationAssertion( "ZFA:0000255") Annotation( "https://github.com/obophenotype/uberon/issues/30") Annotation( "https://github.com/obophenotype/uberon/wiki/The-neural-crest") "paraxial mesenchyme") AnnotationAssertion(Annotation( "ISBN:9780878932504") "somitic mesoderm") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Paraxial_mesoderm") Annotation( ) "mesoderma paraxiale") +AnnotationAssertion(Annotation( "Wikipedia:Paraxial_mesoderm") Annotation( ) "mesoderma paraxiale") AnnotationAssertion( "UBERON:0003077") AnnotationAssertion( ) AnnotationAssertion( ) @@ -170076,7 +169702,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "lateral plate") AnnotationAssertion(Annotation( "EHDAA2:0000919") "lateral plate mesenchyme") -AnnotationAssertion(Annotation( "Wikipedia:Lateral_plate_mesoderm") Annotation( ) "mesoderma laminae lateralis") +AnnotationAssertion(Annotation( "Wikipedia:Lateral_plate_mesoderm") Annotation( ) "mesoderma laminae lateralis") AnnotationAssertion( "UBERON:0003081") AnnotationAssertion( ) AnnotationAssertion( ) @@ -170119,7 +169745,7 @@ AnnotationAssertion( "myomere") AnnotationAssertion( "myotome region") AnnotationAssertion( "myotomes") -AnnotationAssertion(Annotation( "Wikipedia:Myotome") Annotation( ) "myotomus") +AnnotationAssertion(Annotation( "Wikipedia:Myotome") Annotation( ) "myotomus") AnnotationAssertion( "UBERON:0003082") AnnotationAssertion( ) AnnotationAssertion( ) @@ -170210,7 +169836,7 @@ AnnotationAssertion(Annotation( "XAO") "part_of somite in XAO") AnnotationAssertion( "AAO:0010571") AnnotationAssertion( "AEO:0000212") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006255") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006255") AnnotationAssertion( "EHDAA2:0003439") AnnotationAssertion( "EMAPA:31159") AnnotationAssertion( "FMA:295652") @@ -170223,7 +169849,7 @@ AnnotationAssertion( "ZFA:0001080") AnnotationAssertion(Annotation( "TAO:0001080") Annotation( ) "sclerotomes") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Sclerotome") Annotation( ) "sclerotomus") +AnnotationAssertion(Annotation( "Wikipedia:Sclerotome") Annotation( ) "sclerotomus") AnnotationAssertion( "UBERON:0003089") AnnotationAssertion( ) AnnotationAssertion( ) @@ -170281,7 +169907,7 @@ AnnotationAssertion( "ZFA:0000137") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0000137") Annotation( ) "optic stalks") -AnnotationAssertion(Annotation( "Wikipedia:Optic_stalk") Annotation( ) "pedunculus opticus") +AnnotationAssertion(Annotation( "Wikipedia:Optic_stalk") Annotation( ) "pedunculus opticus") AnnotationAssertion( "UBERON:0003098") AnnotationAssertion( ) AnnotationAssertion( ) @@ -170312,7 +169938,7 @@ AnnotationAssertion(Annotation( "cranial NCC population") AnnotationAssertion( "head NCC population") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cranial_neural_crest") Annotation( ) "crista neuralis cranialis") +AnnotationAssertion(Annotation( "Wikipedia:Cranial_neural_crest") Annotation( ) "crista neuralis cranialis") AnnotationAssertion( "head crest") AnnotationAssertion( "head neural crest") AnnotationAssertion( "UBERON:0003099") @@ -170331,7 +169957,7 @@ AnnotationAssertion( "AAO:0010030") AnnotationAssertion( "BILA:0000028") AnnotationAssertion( "CARO:0000028") -AnnotationAssertion( "FBbt:00007011") +AnnotationAssertion(Annotation( ) "FBbt:00007011") AnnotationAssertion( "FMA:67812") AnnotationAssertion( "HAO:0000028") AnnotationAssertion( "SCTID:362608006") @@ -170355,7 +169981,7 @@ AnnotationAssertion(Annotation( "AAO:0010033") AnnotationAssertion( "BILA:0000027") AnnotationAssertion( "CARO:0000027") -AnnotationAssertion( "FBbt:00007004") +AnnotationAssertion(Annotation( ) "FBbt:00007004") AnnotationAssertion( "FMA:67811") AnnotationAssertion( "HAO:0000027") AnnotationAssertion( "SCTID:362609003") @@ -170447,7 +170073,7 @@ AnnotationAssertion( "portion of mesenchymal tissue") AnnotationAssertion( "portion of mesenchyme tissue") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Mesenchyme") Annotation( ) "mesenchyma") +AnnotationAssertion(Annotation( "Wikipedia:Mesenchyme") Annotation( ) "mesenchyma") AnnotationAssertion( "UBERON:0003104") AnnotationAssertion( ) AnnotationAssertion( ) @@ -170994,12 +170620,13 @@ AnnotationAssertion( "FMA:71325") AnnotationAssertion( "MA:0000316") AnnotationAssertion( "MAT:0000340") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D012886") AnnotationAssertion( "MIAA:0000340") AnnotationAssertion( "SCTID:181889008") AnnotationAssertion( "VHOG:0000334") AnnotationAssertion( "Wikipedia:Cranium_(anatomy)") AnnotationAssertion(Annotation( "FMA:71325") "bones of cranium") -AnnotationAssertion(Annotation( "FMA:71325") Annotation( "FMA:TA") Annotation( ) "ossa cranii") +AnnotationAssertion(Annotation( "FMA:71325") Annotation( "FMA:TA") Annotation( ) "ossa cranii") AnnotationAssertion(Annotation( "FMA:71325") "set of bones of cranium") AnnotationAssertion( "skull minus mandible") AnnotationAssertion( "upper part of skull") @@ -171129,7 +170756,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (blood nerve barrier) AnnotationAssertion(Annotation( "GO:0008065") Annotation( "Wikipedia:Blood-nerve_barrier") "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO].") -AnnotationAssertion( "MESH:D049428") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D049428") AnnotationAssertion( "Wikipedia:Blood-nerve_barrier") AnnotationAssertion( "blood-nerve barrier") AnnotationAssertion( "uberon") @@ -171159,7 +170786,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (gustatory organ) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912).") -AnnotationAssertion( "FBbt:00005159") +AnnotationAssertion(Annotation( ) "FBbt:00005159") AnnotationAssertion( "FMA:77853") AnnotationAssertion(Annotation( "OBOL:automatic") "gustatory organ system organ") AnnotationAssertion(Annotation( "OBOL:automatic") "gustatory system organ") @@ -171614,11 +171241,11 @@ AnnotationAssertion( "Wikipedia:Human_rib_cage") AnnotationAssertion( "Wikipedia:Rib_cage") AnnotationAssertion( "galen:RibCage") -AnnotationAssertion(Annotation( "FMA:7480") Annotation( "FMA:TA") Annotation( ) "cavea thoracis") +AnnotationAssertion(Annotation( "FMA:7480") Annotation( "FMA:TA") Annotation( ) "cavea thoracis") AnnotationAssertion(Annotation( "FMA:7480") "rib cage") AnnotationAssertion(Annotation( "FMA:7480") "thoracic cage") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Human_rib_cage") Annotation( ) "cavea thoracis") +AnnotationAssertion(Annotation( "Wikipedia:Human_rib_cage") Annotation( ) "cavea thoracis") AnnotationAssertion( "UBERON:0003252") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thoracic rib cage") @@ -171636,10 +171263,10 @@ AnnotationAssertion(Annotation( "FMA:7576") AnnotationAssertion( "SCTID:263359009") AnnotationAssertion( "Wikipedia:Neck_of_rib") -AnnotationAssertion(Annotation( "Wikipedia:Neck_of_rib") Annotation( ) "collum costae") +AnnotationAssertion(Annotation( "Wikipedia:Neck_of_rib") Annotation( ) "collum costae") AnnotationAssertion(Annotation( "FMA:7576") "rib neck") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neck_of_rib") Annotation( ) "collum costae") +AnnotationAssertion(Annotation( "Wikipedia:Neck_of_rib") Annotation( ) "collum costae") AnnotationAssertion( "UBERON:0003253") AnnotationAssertion(rdfs:label "neck of rib") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png"^^xsd:anyURI) @@ -172467,7 +172094,7 @@ AnnotationAssertion( "SCTID:71683001") AnnotationAssertion(Annotation( "FMA:15034") "rectal submucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "rectum submucosa") -AnnotationAssertion(Annotation( "BTO:0002114") Annotation( ) "tela submucosa recti") +AnnotationAssertion(Annotation( "BTO:0002114") Annotation( ) "tela submucosa recti") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003330") AnnotationAssertion(rdfs:label "submucosa of rectum") @@ -173849,7 +173476,7 @@ AnnotationAssertion( "OBOL:automatic") "Peyer's patch of small bowel") AnnotationAssertion(Annotation( "OBOL:automatic") "Peyer's patch of small intestine") AnnotationAssertion(Annotation( "FMA:15054") "aggregated lymphoid follicle of small intestine") -AnnotationAssertion(Annotation( "FMA:76466") Annotation( ) "noduli lymphoidei aggregati intestini tenuis") +AnnotationAssertion(Annotation( "FMA:76466") Annotation( ) "noduli lymphoidei aggregati intestini tenuis") AnnotationAssertion(Annotation( "OBOL:automatic") "small bowel Peyer's patch") AnnotationAssertion(Annotation( "OBOL:automatic") "small intestine Peyer's patch") AnnotationAssertion( "uberon") @@ -173956,7 +173583,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(Annotation( "MA:th") "EMAPA:37303") AnnotationAssertion( "MA:0000592") -AnnotationAssertion( "MESH:D050280") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D050280") AnnotationAssertion(Annotation( "OBOL:automatic") "arm bone organ") AnnotationAssertion(Annotation( "OBOL:automatic") "bone of arm") AnnotationAssertion(Annotation( "OBOL:automatic") "bone organ of arm") @@ -173992,7 +173619,7 @@ AnnotationAssertion( "EMAPA:35924") AnnotationAssertion( "MA:0001482") AnnotationAssertion( "MA:0003159") -AnnotationAssertion( "MESH:D005147") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005147") AnnotationAssertion( "NCIT:C63706") AnnotationAssertion( "SCTID:181799005") AnnotationAssertion(Annotation( "ncithesaurus:Facial_Bone") "UMLS:C0015455") @@ -174110,8 +173737,8 @@ AnnotationAssertion( "MA:0001917") AnnotationAssertion( "SCTID:145137009") AnnotationAssertion( "Wikipedia:Superior_labial_artery") -AnnotationAssertion(Annotation( "Wikipedia:Superior_labial_artery") Annotation( ) "arteria labialis superior") -AnnotationAssertion(Annotation( "Wikipedia:Superior_labial_artery") Annotation( ) "ramus labialis superior arteriae facialis") +AnnotationAssertion(Annotation( "Wikipedia:Superior_labial_artery") Annotation( ) "arteria labialis superior") +AnnotationAssertion(Annotation( "Wikipedia:Superior_labial_artery") Annotation( ) "ramus labialis superior arteriae facialis") AnnotationAssertion(Annotation( "FMA:49570") "superior labial artery") AnnotationAssertion(Annotation( "FMA:49570") "superior labial branch of facial artery") AnnotationAssertion( "uberon") @@ -174131,11 +173758,11 @@ AnnotationAssertion( "MA:0001916") AnnotationAssertion( "SCTID:145036002") AnnotationAssertion( "Wikipedia:Inferior_labial_artery") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_labial_artery") Annotation( ) "arteria labialis inferior") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_labial_artery") Annotation( ) "arteria labialis inferior") AnnotationAssertion(Annotation( "FMA:49567") "inferior labial artery") AnnotationAssertion(Annotation( "FMA:49567") "inferior labial branch of facial artery") AnnotationAssertion(Annotation( "FMA:TA") "ramus labialis inferior (arteria facialis)") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_labial_artery") Annotation( ) "ramus labialis inferior arteriae facialis") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_labial_artery") Annotation( ) "ramus labialis inferior arteriae facialis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003471") AnnotationAssertion( ) @@ -174226,7 +173853,7 @@ AnnotationAssertion( "Wikipedia:Superior_labial_vein") AnnotationAssertion(Annotation( "FMA:52538") "superior labial vein") AnnotationAssertion(Annotation( "OBOL:automatic") "upper lip vein") -AnnotationAssertion(Annotation( ) "vena labialis superior") +AnnotationAssertion(Annotation( ) "vena labialis superior") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003477") AnnotationAssertion( ) @@ -174245,9 +173872,9 @@ AnnotationAssertion( "Wikipedia:Inferior_labial_vein") AnnotationAssertion(Annotation( "FMA:52541") "inferior labial vein") AnnotationAssertion(Annotation( "OBOL:automatic") "lower lip vein") -AnnotationAssertion(Annotation( ) "vena labialis inferior") +AnnotationAssertion(Annotation( ) "vena labialis inferior") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_labial_vein") Annotation( ) "venae labiales inferiores") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_labial_vein") Annotation( ) "venae labiales inferiores") AnnotationAssertion( "UBERON:0003478") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein of lower lip") @@ -176130,7 +175757,7 @@ AnnotationAssertion( "OBOL:automatic") "connective tissue of foot") AnnotationAssertion(Annotation( "OBOL:automatic") "connective tissue of terminal segment of free lower limb") AnnotationAssertion(Annotation( "MA:0000644") "foot connective tissue") -AnnotationAssertion(Annotation( "OBOL:automatic") Annotation( ) "textus connectivus of pes") +AnnotationAssertion(Annotation( "OBOL:automatic") Annotation( ) "textus connectivus of pes") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003595") AnnotationAssertion(rdfs:label "pes connective tissue") @@ -176252,7 +175879,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "windpipe cartilage") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Tracheal_rings") "cartilage of the trachea") -AnnotationAssertion(Annotation( "Wikipedia:Tracheal_rings") Annotation( ) "cartilagines tracheales") +AnnotationAssertion(Annotation( "Wikipedia:Tracheal_rings") Annotation( ) "cartilagines tracheales") AnnotationAssertion(Annotation( "Wikipedia:Tracheal_rings") "ring of the trachea") AnnotationAssertion( "trachea ring") AnnotationAssertion(Annotation( "Wikipedia:Tracheal_rings") "tracheal ring") @@ -176690,6 +176317,7 @@ EquivalentClasses( ObjectIntersec # Class: (limb muscle) AnnotationAssertion(Annotation( "OBOL:automatic") "Any muscle organ that is part of a limb [Automatically generated definition].") +AnnotationAssertion( ) AnnotationAssertion( "EMAPA:32700") AnnotationAssertion( "MA:0000692") AnnotationAssertion(Annotation( "OBOL:accepted") "limb muscle organ") @@ -176697,6 +176325,7 @@ AnnotationAssertion(Annotation( "OBOL:accepted") "muscle organ of limb") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003661") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "limb muscle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -176732,6 +176361,7 @@ SubClassOf(Annotation( "pro # Class: (hindlimb muscle) AnnotationAssertion(Annotation( "OBOL:automatic") "Any muscle organ that is part of a hindlimb [Automatically generated definition].") +AnnotationAssertion( ) AnnotationAssertion( "AAO:0000222") AnnotationAssertion( "EFO:0001928") AnnotationAssertion( "FMA:37368") @@ -176750,6 +176380,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "UBERON:0003663") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hindlimb muscle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "prolog") ObjectSomeValuesFrom( )) @@ -176813,7 +176444,7 @@ AnnotationAssertion( "NCIT:C13072") AnnotationAssertion( "SCTID:245543004") AnnotationAssertion(Annotation( "ncithesaurus:Dentition") "UMLS:C0011443") -AnnotationAssertion(Annotation( "FMA:75150") Annotation( "FMA:TA") Annotation( ) "dentes") +AnnotationAssertion(Annotation( "FMA:75150") Annotation( "FMA:TA") Annotation( ) "dentes") AnnotationAssertion(Annotation( "FMA:75150") "set of teeth") AnnotationAssertion(Annotation( "FMA:75150") "teeth") AnnotationAssertion(Annotation( "FMA:75150") "teeth set") @@ -176864,7 +176495,7 @@ AnnotationAssertion(Annotation( "FMA:12266") "cavity of compartment of abdomen") AnnotationAssertion(Annotation( "FMA:12266") "space of abdominal compartment") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "GAID:17") Annotation( "Wikipedia:Abdominal_cavity") Annotation( ) "cavitas abdominis") +AnnotationAssertion(Annotation( "GAID:17") Annotation( "Wikipedia:Abdominal_cavity") Annotation( ) "cavitas abdominis") AnnotationAssertion( "UBERON:0003684") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "abdominal cavity") @@ -176902,7 +176533,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "Wikipedia:Foramen_magnum") "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted].") AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0002045") Annotation( "TAO") Annotation( "TAO:wd") "Foramen in the occipital region of neurocranium to allow passage of spinal cord.[TAO]") AnnotationAssertion( "AAO:0010826") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006035") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006035") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37868") AnnotationAssertion( "FMA:75306") AnnotationAssertion( "GAID:228") @@ -176954,11 +176585,11 @@ AnnotationAssertion( "MESH:D004824") AnnotationAssertion( "SCTID:281866004") AnnotationAssertion( "Wikipedia:Epidural_space") -AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") Annotation( ) "cavum epidurale") -AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") Annotation( ) "cavum extradurale") +AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") Annotation( ) "cavum epidurale") +AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") Annotation( ) "cavum extradurale") AnnotationAssertion(Annotation( "FMA:71228") "extradural space") -AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") Annotation( ) "spatium epidurale") -AnnotationAssertion(Annotation( "FMA:71228") Annotation( "FMA:TA") Annotation( ) "spatium extradurale") +AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") Annotation( ) "spatium epidurale") +AnnotationAssertion(Annotation( "FMA:71228") Annotation( "FMA:TA") Annotation( ) "spatium extradurale") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Epidural_space") "epidural cavity") AnnotationAssertion( "UBERON:0003691") @@ -176978,7 +176609,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Acromioclavicular_joint") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Acromioclavicular_joint") "acromioclavicular articulation") -AnnotationAssertion(Annotation( "Wikipedia:Acromioclavicular_joint") Annotation( ) "articulatio acromioclavicularis") +AnnotationAssertion(Annotation( "Wikipedia:Acromioclavicular_joint") Annotation( ) "articulatio acromioclavicularis") AnnotationAssertion(Annotation( "Wikipedia:Acromioclavicular_joint") "scapuloclavicular articulation") AnnotationAssertion( "UBERON:0003692") AnnotationAssertion(rdfs:label "acromioclavicular joint") @@ -177035,7 +176666,7 @@ AnnotationAssertion(Annotation( "MA:0000453") "metacarpo-phalangeal joint") AnnotationAssertion(Annotation( "NCBITaxon:8782") Annotation( ) "carpometacarpophalangeal joint") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Metacarpophalangeal_joint") Annotation( ) "articulationes metacarpophalangeae") +AnnotationAssertion(Annotation( "Wikipedia:Metacarpophalangeal_joint") Annotation( ) "articulationes metacarpophalangeae") AnnotationAssertion(Annotation( "HP:0004294") "metacarpal phalangeal joint") AnnotationAssertion( "UBERON:0003695") AnnotationAssertion( ) @@ -177060,7 +176691,7 @@ AnnotationAssertion( "galen:MetatarsoPhalangealJoint") AnnotationAssertion(Annotation( "PHENOSCAPE:ad") "metatarsal-phalangeal joint") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Metatarsophalangeal_articulations") Annotation( ) "articulationes metatarsophalangeae") +AnnotationAssertion(Annotation( "Wikipedia:Metatarsophalangeal_articulations") Annotation( ) "articulationes metatarsophalangeae") AnnotationAssertion(Annotation( "FMA:35222") "metatarsal joint") AnnotationAssertion(Annotation( "Wikipedia:Metatarsophalangeal_articulations") "metatarsalphalangeal joint") AnnotationAssertion(Annotation( "Wikipedia:Metatarsophalangeal_articulations") "metatarsophalangeal") @@ -177089,7 +176720,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "FMA:10429") "abdominal wall proper") AnnotationAssertion(Annotation( "Wikipedia:Abdominal_wall") "layers of the abdominal wall") -AnnotationAssertion(Annotation( "Wikipedia:Abdominal_wall") Annotation( ) "paries abdominalis") +AnnotationAssertion(Annotation( "Wikipedia:Abdominal_wall") Annotation( ) "paries abdominalis") AnnotationAssertion( "UBERON:0003697") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "abdominal wall") @@ -177161,7 +176792,7 @@ AnnotationAssertion( "GAID:486") "cerebral arterial circle") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "GAID:486") "Willis circle") -AnnotationAssertion(Annotation( "Wikipedia:Circle_of_Willis") Annotation( ) "circulus arteriosus cerebri") +AnnotationAssertion(Annotation( "Wikipedia:Circle_of_Willis") Annotation( ) "circulus arteriosus cerebri") AnnotationAssertion( "UBERON:0003709") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "circle of Willis") @@ -177191,8 +176822,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_vein") "innominate trunk") AnnotationAssertion(Annotation( "GAID:529") Annotation( "Wikipedia:Brachiocephalic_vein") "innominate vein") AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_vein") "innominate veins") -AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_vein") Annotation( ) "vena brachiocephalica") -AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_vein") Annotation( ) "venae anonyma") +AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_vein") Annotation( ) "vena brachiocephalica") +AnnotationAssertion(Annotation( "Wikipedia:Brachiocephalic_vein") Annotation( ) "venae anonyma") AnnotationAssertion( "UBERON:0003711") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brachiocephalic vein") @@ -177241,10 +176872,10 @@ AnnotationAssertion( "ncithesaurus:Splenic_Vein") "UMLS:C0038001") AnnotationAssertion( "Wikipedia:Splenic_vein") AnnotationAssertion( "galen:SplenicVein") -AnnotationAssertion(Annotation( "FMA:14331") Annotation( "FMA:TA") Annotation( ) "vena splenica") +AnnotationAssertion(Annotation( "FMA:14331") Annotation( "FMA:TA") Annotation( ) "vena splenica") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0002164") Annotation( "Wikipedia:Splenic_vein") "lienal vein") -AnnotationAssertion(Annotation( "Wikipedia:Splenic_vein") Annotation( ) "vena lienalis") +AnnotationAssertion(Annotation( "Wikipedia:Splenic_vein") Annotation( ) "vena lienalis") AnnotationAssertion( "UBERON:0003713") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "splenic vein") @@ -177312,7 +176943,7 @@ AnnotationAssertion( "SCTID:24227007") AnnotationAssertion( "VHOG:0001347") AnnotationAssertion( "Wikipedia:Recurrent_laryngeal_nerve") -AnnotationAssertion(Annotation( "Wikipedia:Recurrent_laryngeal_nerve") Annotation( ) "nervus laryngeus recurrens") +AnnotationAssertion(Annotation( "Wikipedia:Recurrent_laryngeal_nerve") Annotation( ) "nervus laryngeus recurrens") AnnotationAssertion( "recurrent laryngeal nerve from vagus nerve") AnnotationAssertion(Annotation( "VHOG:0001347") "vagus X nerve recurrent laryngeal branch") AnnotationAssertion( "uberon") @@ -177374,10 +177005,10 @@ AnnotationAssertion( "SCTID:360498003") AnnotationAssertion( "Wikipedia:Thoracic_nerves") AnnotationAssertion( "neuronames:1725") -AnnotationAssertion(Annotation( "FMA:5860") Annotation( "FMA:TA") Annotation( ) "nervus thoracis") +AnnotationAssertion(Annotation( "FMA:5860") Annotation( "FMA:TA") Annotation( ) "nervus thoracis") AnnotationAssertion(Annotation( "FMA:5860") "thoracic spinal nerve") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thoracic_nerves") Annotation( ) "nervi thoracici") +AnnotationAssertion(Annotation( "Wikipedia:Thoracic_nerves") Annotation( ) "nervi thoracici") AnnotationAssertion(Annotation( "GAID:857") "pectoral nerve") AnnotationAssertion( "UBERON:0003726") AnnotationAssertion(rdfs:label "thoracic nerve") @@ -177400,7 +177031,7 @@ AnnotationAssertion(Annotation( "FMA:6028") "thoracic anterior ramus") AnnotationAssertion(Annotation( "FMA:6028") "ventral ramus of thoracic spinal nerve") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Intercostal_nerves") Annotation( ) "nervi intercostales") +AnnotationAssertion(Annotation( "Wikipedia:Intercostal_nerves") Annotation( ) "nervi intercostales") AnnotationAssertion( "UBERON:0003727") AnnotationAssertion(rdfs:label "intercostal nerve") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png"^^xsd:anyURI) @@ -177454,12 +177085,12 @@ AnnotationAssertion(Annotation( "FMA:59660") "mucous membrane of mouth") AnnotationAssertion( "oral mucous membrane") AnnotationAssertion(Annotation( "FMA:59660") "oral part of viscerocranial mucosa") -AnnotationAssertion(Annotation( "FMA:59660") Annotation( "FMA:TA") Annotation( ) "tunica mucosa oris") +AnnotationAssertion(Annotation( "FMA:59660") Annotation( "FMA:TA") Annotation( ) "tunica mucosa oris") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "GAID:951") "buccal mucosa") AnnotationAssertion(Annotation( "MA:0002794") "mucosal lining of mouth") AnnotationAssertion(Annotation( "GAID:951") "oral mucosa") -AnnotationAssertion(Annotation( "Wikipedia:Oral_mucosa") Annotation( ) "tunica mucosa oris") +AnnotationAssertion(Annotation( "Wikipedia:Oral_mucosa") Annotation( ) "tunica mucosa oris") AnnotationAssertion( "UBERON:0003729") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mouth mucosa") @@ -177530,7 +177161,7 @@ AnnotationAssertion( "MA:th") "forelimb stylopodial element") AnnotationAssertion(Annotation( "OBOL:automatic") "forelimb stylopodium") AnnotationAssertion( "proximal segment of free upper limb") -AnnotationAssertion(Annotation( "FMA:24890") Annotation( "FMA:TA") Annotation( ) "regio brachialis") +AnnotationAssertion(Annotation( "FMA:24890") Annotation( "FMA:TA") Annotation( ) "regio brachialis") AnnotationAssertion( "stylopod of arm") AnnotationAssertion( "stylopod of forelimb") AnnotationAssertion(Annotation( "MA:0000035") Annotation( ) "upper arm") @@ -177564,6 +177195,7 @@ AnnotationAssertion( "SCTID:244015008") AnnotationAssertion(Annotation( "ncithesaurus:Leg") "UMLS:C1140621") AnnotationAssertion( "VHOG:0000348") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "VO:0010971") AnnotationAssertion( "VSAO:0005060") AnnotationAssertion( "Wikipedia:Forearm") AnnotationAssertion( "galen:Leg") @@ -178227,7 +177859,7 @@ AnnotationAssertion(Annotation( "FMA:11946") "arcus vertebrae (vertebralis)") AnnotationAssertion(Annotation( "ZFA:0001066") "dorsal arcocentrum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Vertebral_arch") Annotation( ) "arcus vertebrae") +AnnotationAssertion(Annotation( "Wikipedia:Vertebral_arch") Annotation( ) "arcus vertebrae") AnnotationAssertion(Annotation( "MA:0001453") "vertebra dorsal arch") AnnotationAssertion( "UBERON:0003861") AnnotationAssertion( ) @@ -178254,7 +177886,7 @@ AnnotationAssertion( "FMA:75817") "middle phalanx of finger") AnnotationAssertion(Annotation( "MA:0001394") "middle phalanx of hand") AnnotationAssertion( "middle phalanx of manual digit") -AnnotationAssertion(Annotation( "FMA:75817") Annotation( "FMA:TA") Annotation( ) "phalanx media manus") +AnnotationAssertion(Annotation( "FMA:75817") Annotation( "FMA:TA") Annotation( ) "phalanx media manus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003864") AnnotationAssertion( ) @@ -178280,7 +177912,7 @@ AnnotationAssertion(Annotation( "distal phalanx of hand") AnnotationAssertion( "distal phalanx of manual digit") AnnotationAssertion(Annotation( "MA:0001388") "hand distal phalanx") -AnnotationAssertion(Annotation( "FMA:75818") Annotation( "FMA:TA") Annotation( ) "phalanx distalis manus") +AnnotationAssertion(Annotation( "FMA:75818") Annotation( "FMA:TA") Annotation( ) "phalanx distalis manus") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "terminal phalanx of hand") AnnotationAssertion(Annotation( "http://www.medilexicon.com/medicaldictionary.php?t=67679") "ungual phalanx of hand") AnnotationAssertion( "uberon") @@ -178305,7 +177937,7 @@ AnnotationAssertion(Annotation( "middle pedal phalanx") AnnotationAssertion( "middle phalanx of foot") AnnotationAssertion(Annotation( "FMA:75829") "middle phalanx of toe") -AnnotationAssertion(Annotation( "FMA:75829") Annotation( "FMA:TA") Annotation( ) "phalanx media pedis") +AnnotationAssertion(Annotation( "FMA:75829") Annotation( "FMA:TA") Annotation( ) "phalanx media pedis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003866") AnnotationAssertion( ) @@ -178329,7 +177961,7 @@ AnnotationAssertion( "distal phalanx of foot") AnnotationAssertion(Annotation( "FMA:75830") "distal phalanx of toe") AnnotationAssertion(Annotation( "MA:0001380") "foot distal phalanx") -AnnotationAssertion(Annotation( "FMA:75830") Annotation( "FMA:TA") Annotation( ) "phalanx distalis pedis") +AnnotationAssertion(Annotation( "FMA:75830") Annotation( "FMA:TA") Annotation( ) "phalanx distalis pedis") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "terminal phalanx of foot") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "terminal phalanx of hindlimb") AnnotationAssertion(Annotation( "http://www.medilexicon.com/medicaldictionary.php?t=67679") "ungual phalanx of foot") @@ -178355,7 +177987,7 @@ AnnotationAssertion( "SCTID:85533000") AnnotationAssertion(Annotation( "ncithesaurus:Proximal_Phalanx_of_Foot") "UMLS:C0224020") AnnotationAssertion(Annotation( "MA:0001387") "foot proximal phalanx") -AnnotationAssertion(Annotation( "FMA:75828") Annotation( "FMA:TA") Annotation( ) "phalanx proximalis pedis") +AnnotationAssertion(Annotation( "FMA:75828") Annotation( "FMA:TA") Annotation( ) "phalanx proximalis pedis") AnnotationAssertion( "proximal pedal phalanx") AnnotationAssertion( "proximal phalanx of foot") AnnotationAssertion( "proximal phalanx of foot digit") @@ -178460,7 +178092,7 @@ AnnotationAssertion( "fallopian tubes") AnnotationAssertion(Annotation( "EHDAA2:0000504") "female paramesonephric duct") AnnotationAssertion(Annotation( "EMAPA:35660") "paramesonephric duct of female") -AnnotationAssertion(Annotation( "Wikipedia:Fallopian_tube") Annotation( ) "tuba uterina") +AnnotationAssertion(Annotation( "Wikipedia:Fallopian_tube") Annotation( ) "tuba uterina") AnnotationAssertion( "UBERON:0003889") AnnotationAssertion( ) AnnotationAssertion( ) @@ -178635,7 +178267,7 @@ AnnotationAssertion(Annotation( "XAO:0003216") Annotation( "ZFA:0000046") "neural retina") AnnotationAssertion(Annotation( "ZFA:0000046") "neuroretina") AnnotationAssertion(Annotation( "FMA:58628") "stratum nervosum (retina)") -AnnotationAssertion(Annotation( "FMA:58628") Annotation( "FMA:TA") Annotation( ) "stratum nervosum retinae") +AnnotationAssertion(Annotation( "FMA:58628") Annotation( "FMA:TA") Annotation( ) "stratum nervosum retinae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:000027") "neural retinal epithelium") AnnotationAssertion( "UBERON:0003902") @@ -178700,7 +178332,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "UBERON:cjm") Annotation( "Wikipedia:Choroid_plexus") "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue.") AnnotationAssertion( "The CP epithelial layer is continuous with the ependymal cell layer that lines the ventricles, but unlike the ependyma, the epithelial layer has tight gap junctions between the cells on the side facing the ventricle (apical surface). These gap junctions prevent the majority of substances from crossing the cell layer into the CSF; thus the CP acts as a blood-CSF barrier") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006008") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006008") AnnotationAssertion( "EMAPA:36608") AnnotationAssertion( "FMA:242811") AnnotationAssertion( "MA:0000824") @@ -178735,7 +178367,7 @@ AnnotationAssertion(Annotation( "contrast with a multi-tissue tube, which has as parts both epithelium, connective tissue, possibly muscle layers") AnnotationAssertion( "AEO:0000114") AnnotationAssertion( "EHDAA2:0003114") -AnnotationAssertion( "FBbt:00007474") +AnnotationAssertion(Annotation( ) "FBbt:00007474") AnnotationAssertion( "epithelial or endothelial tube") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0003914") @@ -178921,7 +178553,7 @@ AnnotationAssertion( "BTO:0000956") AnnotationAssertion( "EHDAA2:0004567") AnnotationAssertion( "EMAPA:32928") -AnnotationAssertion( "FBbt:00047166") +AnnotationAssertion(Annotation( ) "FBbt:00047166") AnnotationAssertion( "MA:0003201") AnnotationAssertion( "NCIT:C12963") AnnotationAssertion( "TAO:0005123") @@ -178993,7 +178625,7 @@ EquivalentClasses( ObjectIntersec # Class: (reproductive gland) AnnotationAssertion(Annotation( "MP:0000653") "Any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006162") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006162") AnnotationAssertion( "MA:0001751") AnnotationAssertion(Annotation( "OBOL:automatic") "genitalia gland") AnnotationAssertion(Annotation( "MP:0000653") "gland of genitalia") @@ -179156,6 +178788,7 @@ SubClassOf( (internal female genitalia) AnnotationAssertion(Annotation( "MP:0009209") "The internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina.") +AnnotationAssertion( ) AnnotationAssertion( "BTO:0003099") AnnotationAssertion( "FMA:45654") AnnotationAssertion( "SCTID:303518005") @@ -179165,6 +178798,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BTO:0003099") "organa genitalia feminina interna") AnnotationAssertion( "UBERON:0003975") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547") @@ -179201,7 +178835,7 @@ AnnotationAssertion( "SCTID:314163001") AnnotationAssertion( "neuronames:1213") AnnotationAssertion( "cerebellar fissure") -AnnotationAssertion(Annotation( "FMA:77789") Annotation( "FMA:TA") Annotation( ) "fissurae cerebelli") +AnnotationAssertion(Annotation( "FMA:77789") Annotation( "FMA:TA") Annotation( ) "fissurae cerebelli") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:CBf") Annotation( ) "cerebellar fissures") AnnotationAssertion(Annotation( "FMA:77789") Annotation( ) "cerebellar fissures set") @@ -179262,7 +178896,7 @@ AnnotationAssertion(Annotation( "FMA:18307") "infundibulum of uterine tube") AnnotationAssertion(Annotation( "FMA:18307") "infundibulum of fallopian tube") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Infundibulum_of_uterine_tube") Annotation( ) "infundibulum tubae uterinae") +AnnotationAssertion(Annotation( "Wikipedia:Infundibulum_of_uterine_tube") Annotation( ) "infundibulum tubae uterinae") AnnotationAssertion( "UBERON:0003984") AnnotationAssertion( ) AnnotationAssertion( ) @@ -179310,7 +178944,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (olfactory bulb layer) -AnnotationAssertion(Annotation( "MP:0009946") ".") +AnnotationAssertion(Annotation( "MP:0009946") "Missing definition for term UBERON:0004001. Please replace it using linked reference.") AnnotationAssertion( "TODO - check isa parentage") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37917") AnnotationAssertion( "NLXANAT:20090402") @@ -179337,7 +178971,7 @@ AnnotationAssertion(Annotation( "Not to be confused with 'dermatome segment of skin'.") AnnotationAssertion( "AAO:0011028") AnnotationAssertion( "AEO:0001017") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006248") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006248") AnnotationAssertion( "EHDAA2_RETIRED:0003428") AnnotationAssertion( "EHDAA:1719") AnnotationAssertion( "EHDAA:1725") @@ -179353,7 +178987,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Cutis_plate") "dermatomal mesenchyme") AnnotationAssertion( "uberon") AnnotationAssertion( "epimere mesoderm") -AnnotationAssertion(Annotation( "Wikipedia:Dermatomal_mesenchyme") Annotation( ) "mesenchyma dermatomiale") +AnnotationAssertion(Annotation( "Wikipedia:Dermatomal_mesenchyme") Annotation( ) "mesenchyma dermatomiale") AnnotationAssertion( "UBERON:0004016") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dermatome") @@ -179438,6 +179072,22 @@ AnnotationAssertion(rdfs:label " SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +DisjointClasses(Annotation( "lexical") ) + +# Class: (lateral ganglionic eminence) + +AnnotationAssertion(Annotation( "MP:0004277") "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE.") +AnnotationAssertion(Annotation( "PMID:23375746") Annotation( ) "LGE") +AnnotationAssertion( "DHBA:10551") +AnnotationAssertion(Annotation( "MA:th") "EMAPA:37470") +AnnotationAssertion( "PBA:128012822") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0004025") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lateral ganglionic eminence") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (caudal ganglionic eminence) @@ -179473,6 +179123,7 @@ AnnotationAssertion(rdfs:label " AnnotationAssertion( "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cortical subplate) @@ -179483,6 +179134,7 @@ AnnotationAssertion(Annotation( "DHBA:10522") AnnotationAssertion( "EMAPA:32703") AnnotationAssertion( "PBA:294021932") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "VO:0011276") AnnotationAssertion( "Wikipedia:Subplate") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png") AnnotationAssertion( "neuronames:3233") @@ -179552,7 +179204,7 @@ AnnotationAssertion( "SCTID:279759001") AnnotationAssertion( "Wikipedia:Osseous_ampullae") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Osseous_ampullae") Annotation( ) "ampullae osseae") +AnnotationAssertion(Annotation( "Wikipedia:Osseous_ampullae") Annotation( ) "ampullae osseae") AnnotationAssertion(Annotation( "MP:0008488") "membraneous ampulla of the semicircular duct") AnnotationAssertion(Annotation( "MA:0002770") "semicircular duct ampulla") AnnotationAssertion( "UBERON:0004043") @@ -179770,7 +179422,7 @@ AnnotationAssertion( "MP:0009901") "forebrain prominence") AnnotationAssertion(Annotation( "MP:0009901") "frontonasal mass") AnnotationAssertion(Annotation( "MP:0009901") "frontonasal process") -AnnotationAssertion(Annotation( "Wikipedia:Frontonasal_prominence") Annotation( ) "prominentia frontonasalis") +AnnotationAssertion(Annotation( "Wikipedia:Frontonasal_prominence") Annotation( ) "prominentia frontonasalis") AnnotationAssertion( "UBERON:0004066") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "frontonasal prominence") @@ -179791,7 +179443,7 @@ AnnotationAssertion(Annotation( "EMAPA:16805") "latero-nasal process") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "lateral nasal swelling") -AnnotationAssertion(Annotation( "Wikipedia:Lateral_nasal_prominence") Annotation( ) "prominentia nasalis lateralis") +AnnotationAssertion(Annotation( "Wikipedia:Lateral_nasal_prominence") Annotation( ) "prominentia nasalis lateralis") AnnotationAssertion( "UBERON:0004067") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lateral nasal prominence") @@ -179814,7 +179466,7 @@ AnnotationAssertion( "Wikipedia:Medial_nasal_prominence") AnnotationAssertion(Annotation( "EHDAA2:0001076") "medial nasal process") AnnotationAssertion(Annotation( "EMAPA:16808") "medial-nasal process") -AnnotationAssertion(Annotation( "Wikipedia:Medial_nasal_prominence") Annotation( ) "prominentia nasalis medialis") +AnnotationAssertion(Annotation( "Wikipedia:Medial_nasal_prominence") Annotation( ) "prominentia nasalis medialis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "medial nasal swelling") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "nasomedial prominence") @@ -179947,7 +179599,7 @@ AnnotationAssertion( "Wikipedia:Collecting_duct_system") "collecting duct system") AnnotationAssertion(Annotation( "Wikipedia:Collecting_duct_system") "kidney collecting duct system") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Collecting_duct_system") Annotation( ) "tubulus renalis colligens") +AnnotationAssertion(Annotation( "Wikipedia:Collecting_duct_system") Annotation( ) "tubulus renalis colligens") AnnotationAssertion( "UBERON:0004100") AnnotationAssertion( ) AnnotationAssertion( ) @@ -179974,7 +179626,7 @@ AnnotationAssertion(Annotation( "MP:0004189") "alveolar bone") AnnotationAssertion( "alveolar margin") AnnotationAssertion( "alveolar process") -AnnotationAssertion(Annotation( ) "margo alveolaris") +AnnotationAssertion(Annotation( ) "margo alveolaris") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004103") AnnotationAssertion( ) @@ -180057,7 +179709,7 @@ AnnotationAssertion( "SCTID:362551002") AnnotationAssertion( "Wikipedia:Tympanic_cavity") AnnotationAssertion(Annotation( "OBOL:automatic") "anatomical cavity of middle ear") -AnnotationAssertion(Annotation( "Wikipedia:Tympanic_cavity") Annotation( ) "cavitas tympani") +AnnotationAssertion(Annotation( "Wikipedia:Tympanic_cavity") Annotation( ) "cavitas tympani") AnnotationAssertion(Annotation( "OBOL:automatic") "cavity of middle ear") AnnotationAssertion(Annotation( "OBOL:automatic") "middle ear cavity") AnnotationAssertion(Annotation( "OBOL:automatic") "middle-ear cavity") @@ -180372,7 +180024,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (salivatory nucleus) -AnnotationAssertion(Annotation( "GO:0021751") ".") +AnnotationAssertion(Annotation( "GO:0021751") "Missing definition for term UBERON:0004133. Please replace it using linked reference.") AnnotationAssertion(Annotation( "GO:0021751") "salivary nucleus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004133") @@ -180646,6 +180298,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (internal genitalia) AnnotationAssertion(Annotation( "GO:0035260") "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals.") +AnnotationAssertion( ) AnnotationAssertion( "FMA:45652") AnnotationAssertion( "internal genitalia") AnnotationAssertion( "internal genitals") @@ -180653,6 +180306,7 @@ AnnotationAssertion( "internal reproductive organ") AnnotationAssertion( "internal sex organ") AnnotationAssertion( "UBERON:0004175") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547") @@ -180972,6 +180626,7 @@ SubClassOf(Annotation( "ZFA AnnotationAssertion(Annotation( "GO:0072050") "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron.") AnnotationAssertion( "TODO") AnnotationAssertion( "EMAPA:27756") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "VO:0010896") AnnotationAssertion( "ZFA:0005589") AnnotationAssertion(Annotation( ) "SSB") AnnotationAssertion(Annotation( "http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html") "stage II nephron") @@ -181009,7 +180664,7 @@ AnnotationAssertion( "medullary pyramid") AnnotationAssertion(Annotation( "ncithesaurus:Pyramid_of_Malpighi") Annotation( ) "pyramid of Malphigi") AnnotationAssertion(Annotation( "UBERON:cjm") "pyramid of Malpighi") -AnnotationAssertion(Annotation( "Wikipedia:Renal_pyramids") Annotation( ) "pyramides renales") +AnnotationAssertion(Annotation( "Wikipedia:Renal_pyramids") Annotation( ) "pyramides renales") AnnotationAssertion(Annotation( "BTO:0003926") "pyramis renalis") AnnotationAssertion(Annotation( "FMA:258870") "renal medullary region") AnnotationAssertion( "UBERON:0004200") @@ -181037,7 +180692,7 @@ AnnotationAssertion(Annotation( "EMAPA:29675") "inner stripe of outer medulla") AnnotationAssertion(Annotation( "FMA:76663") "inner stripe of renal medulla") AnnotationAssertion(Annotation( "MA:0002626") "outer medulla inner stripe") -AnnotationAssertion(Annotation( "FMA:76663") Annotation( "FMA:TA") Annotation( ) "stria interna medullae renalis") +AnnotationAssertion(Annotation( "FMA:76663") Annotation( "FMA:TA") Annotation( ) "stria interna medullae renalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004201") AnnotationAssertion( ) @@ -181059,7 +180714,7 @@ AnnotationAssertion(Annotation( "FMA:76662") "outer stripe of medulla of kidney") AnnotationAssertion(Annotation( "EMAPA:29663") "outer stripe of outer medulla") AnnotationAssertion(Annotation( "FMA:76662") "outer stripe of renal medulla") -AnnotationAssertion(Annotation( "FMA:76662") Annotation( "FMA:TA") Annotation( ) "stria externa medullae renalis") +AnnotationAssertion(Annotation( "FMA:76662") Annotation( "FMA:TA") Annotation( ) "stria externa medullae renalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004202") AnnotationAssertion( ) @@ -181251,7 +180906,7 @@ AnnotationAssertion(Annotation( "FMA:76909") "muscular layer of urethra") AnnotationAssertion(Annotation( "OBOL:automatic") "smooth muscle of urethra") AnnotationAssertion(Annotation( "OBOL:automatic") "smooth muscle tissue of urethra") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis urethrae") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis urethrae") AnnotationAssertion(Annotation( "OBOL:automatic") "urethra smooth muscle tissue") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0001691") "urethral smooth muscle") @@ -181380,7 +181035,7 @@ AnnotationAssertion(Annotation( "FMA:19239") "muscular layer of ductus deferens") AnnotationAssertion(Annotation( "FMA:19239") "muscularis of vas deferens") AnnotationAssertion(Annotation( "FMA:19239") "tunica muscularis (ductus deferens)") -AnnotationAssertion(Annotation( "FMA:19239") Annotation( "FMA:TA") Annotation( ) "tunica muscularis ductus deferentis") +AnnotationAssertion(Annotation( "FMA:19239") Annotation( "FMA:TA") Annotation( ) "tunica muscularis ductus deferentis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004224") AnnotationAssertion(rdfs:label "muscular coat of vas deferens") @@ -181870,7 +181525,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "smooth muscle of prostate gland") AnnotationAssertion(Annotation( "OBOL:automatic") "smooth muscle tissue of prostate") AnnotationAssertion(Annotation( "OBOL:automatic") "smooth muscle tissue of prostate gland") -AnnotationAssertion(Annotation( "FMA:74245") Annotation( "FMA:TA") Annotation( ) "substantia muscularis prostatae") +AnnotationAssertion(Annotation( "FMA:74245") Annotation( "FMA:TA") Annotation( ) "substantia muscularis prostatae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004243") AnnotationAssertion( ) @@ -182151,6 +181806,7 @@ SubClassOf(Annotation( "pro AnnotationAssertion(Annotation( "OBOL:automatic") "Any muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition].") AnnotationAssertion( "the FMA class 'muscle of leg' belongs here, do not move[cjm]") +AnnotationAssertion( ) AnnotationAssertion( "See notes on UBERON:0000978 for possible terminological confusion over term 'leg'") AnnotationAssertion( "EMAPA:19318") AnnotationAssertion( "FMA:22471") @@ -182161,6 +181817,7 @@ AnnotationAssertion( "OBOL:automatic") "calf muscle") AnnotationAssertion(Annotation( "FMA:22471") Annotation( ) "muscle of leg") AnnotationAssertion( "UBERON:0004256") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hindlimb zeugopod muscle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -182552,11 +182209,11 @@ AnnotationAssertion( "GO:0003204") "heart fibrous skeleton") AnnotationAssertion(Annotation( "FMA:9496") "skeleton of heart") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "anulus fibrosus dexter cordis") -AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "anulus fibrosus sinister cordis") -AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "trigona fibrosa") -AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "trigonum fibrosum dextrum cordis") -AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "trigonum fibrosum sinistrum cordis") +AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "anulus fibrosus dexter cordis") +AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "anulus fibrosus sinister cordis") +AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "trigona fibrosa") +AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "trigonum fibrosum dextrum cordis") +AnnotationAssertion(Annotation( "Wikipedia:Cardiac_skeleton") Annotation( ) "trigonum fibrosum sinistrum cordis") AnnotationAssertion( "UBERON:0004292") AnnotationAssertion(rdfs:label "cardiac skeleton") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png"^^xsd:anyURI) @@ -182650,7 +182307,7 @@ AnnotationAssertion(Annotation( "AAO:0010676") "terminal phalanx") AnnotationAssertion(Annotation( "http://www.medilexicon.com/medicaldictionary.php?t=67679") "ungual phalanx") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Distal_phalanges") Annotation( ) "phalanx distalis") +AnnotationAssertion(Annotation( "Wikipedia:Distal_phalanges") Annotation( ) "phalanx distalis") AnnotationAssertion( "UBERON:0004300") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "distal phalanx") @@ -182741,7 +182398,7 @@ AnnotationAssertion( "EHDAA:185") AnnotationAssertion( "EMAPA:16072") AnnotationAssertion( "FMA:293110") -AnnotationAssertion( "MESH:D054240") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D054240") AnnotationAssertion( "NCIT:C28402") AnnotationAssertion( "SCTID:361438007") AnnotationAssertion(Annotation( "ncithesaurus:Primitive_Streak") "UMLS:C0033153") @@ -182799,7 +182456,7 @@ AnnotationAssertion( ) "limb buds") AnnotationAssertion(Annotation( "GO:0060174") "limbbud") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Limb_bud") Annotation( ) "gemmae membrorum") +AnnotationAssertion(Annotation( "Wikipedia:Limb_bud") Annotation( ) "gemmae membrorum") AnnotationAssertion( "UBERON:0004347") AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm") @@ -182844,7 +182501,7 @@ AnnotationAssertion( "XAO:0004121") "apical epidermal ridge") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MP:0001676") "AER") -AnnotationAssertion(Annotation( "Wikipedia:Apical_ectodermal_ridge") Annotation( ) "crista ectodermalis apicalis") +AnnotationAssertion(Annotation( "Wikipedia:Apical_ectodermal_ridge") Annotation( ) "crista ectodermalis apicalis") AnnotationAssertion( "UBERON:0004356") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "apical ectodermal ridge") @@ -182909,7 +182566,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "EHDAA2:0000006") "1st arch") AnnotationAssertion(Annotation( "VHOG:0000296") "1st visceral arch") -AnnotationAssertion(Annotation( "Wikipedia:First_pharyngeal_arch") Annotation( ) "arcus pharyngeus primus") +AnnotationAssertion(Annotation( "Wikipedia:First_pharyngeal_arch") Annotation( ) "arcus pharyngeus primus") AnnotationAssertion( "UBERON:0004362") AnnotationAssertion( ) AnnotationAssertion( ) @@ -182949,9 +182606,9 @@ AnnotationAssertion(Annotation( "EMAPA:16684") Annotation( "MP:0002672") "embryonic aortic arch artery") AnnotationAssertion(Annotation( "MP:0002672") "pharyngeal arch artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Aortic_arches") Annotation( ) "a. arcuum pharyngeorum") +AnnotationAssertion(Annotation( "Wikipedia:Aortic_arches") Annotation( ) "a. arcuum pharyngeorum") AnnotationAssertion(Annotation( "EMAPA:16684") "aortic arch artery") -AnnotationAssertion(Annotation( "Wikipedia:Aortic_arches") Annotation( ) "arteriae arcuum pharyngeorum") +AnnotationAssertion(Annotation( "Wikipedia:Aortic_arches") Annotation( ) "arteriae arcuum pharyngeorum") AnnotationAssertion(Annotation( "ZFA:0005004") Annotation( "ZFIN:ZDB-PUB-080512-6") Annotation( ) "branchial aortic arches") AnnotationAssertion(Annotation( ) "pharyngeal arch arteries") AnnotationAssertion(Annotation( "VHOG:0000122") "pharyngeal arch artery") @@ -183016,7 +182673,7 @@ AnnotationAssertion( "Descemet membrane") AnnotationAssertion(Annotation( "FMA:58309") "Descemet's posterior elastic lamina") AnnotationAssertion(Annotation( "FMA:58309") "lamina limitans posterior") -AnnotationAssertion(Annotation( "FMA:58309") Annotation( "FMA:TA") Annotation( ) "lamina limitans posterior corneae") +AnnotationAssertion(Annotation( "FMA:58309") Annotation( "FMA:TA") Annotation( ) "lamina limitans posterior corneae") AnnotationAssertion(Annotation( "MA:0001246") "posterior limiting lamina") AnnotationAssertion(Annotation( "FMA:58309") "posterior limiting lamina of cornea") AnnotationAssertion(Annotation( "ZFA:0001686") "posterior limiting membrane") @@ -183052,9 +182709,9 @@ AnnotationAssertion(Annotation( "MA:0001240") "anterior limiting lamina") AnnotationAssertion(Annotation( "FMA:58273") "anterior limiting lamina of cornea") AnnotationAssertion(Annotation( "FMA:58273") "lamina limitans anterior (cornea)") -AnnotationAssertion(Annotation( "FMA:58273") Annotation( "FMA:TA") Annotation( ) "lamina limitans anterior corneae") +AnnotationAssertion(Annotation( "FMA:58273") Annotation( "FMA:TA") Annotation( ) "lamina limitans anterior corneae") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957") Annotation( ) "Reichert's membrane") +AnnotationAssertion(Annotation( "http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957") Annotation( ) "Reichert's membrane") AnnotationAssertion(Annotation( "ZFA:0001684") "anterior limiting membrane") AnnotationAssertion( "UBERON:0004370") AnnotationAssertion( ) @@ -183287,7 +182944,7 @@ AnnotationAssertion( "SCTID:272704004") AnnotationAssertion(Annotation( "FMA:226482") "basal epiphysis of phalanx of finger") AnnotationAssertion(Annotation( "FMA:226482") "base of phalanx of finger") -AnnotationAssertion(Annotation( "FMA:226482") Annotation( "FMA:TA") Annotation( ) "basis phalangis manus") +AnnotationAssertion(Annotation( "FMA:226482") Annotation( "FMA:TA") Annotation( ) "basis phalangis manus") AnnotationAssertion( "proximal epiphysis of phalanx of finger") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:226482") "proximal epiphysis of phalanx of hand") @@ -183301,7 +182958,7 @@ AnnotationAssertion(Annotation( "FMA:33817") AnnotationAssertion( "SCTID:119545008") AnnotationAssertion(Annotation( "FMA:33817") "base of metatarsal bone") -AnnotationAssertion(Annotation( "FMA:33817") Annotation( "FMA:TA") Annotation( ) "basis ossis metatarsi") +AnnotationAssertion(Annotation( "FMA:33817") Annotation( "FMA:TA") Annotation( ) "basis ossis metatarsi") AnnotationAssertion(Annotation( "FMA:33817") "proximal end of metatarsal bone") AnnotationAssertion(Annotation( "FMA:33817") "upper end of metatarsal bone") AnnotationAssertion( "uberon") @@ -183315,7 +182972,7 @@ AnnotationAssertion(Annotation( "FMA:33795") AnnotationAssertion( "SCTID:272695001") AnnotationAssertion(Annotation( "FMA:33795") "base of metacarpal bone") -AnnotationAssertion(Annotation( "FMA:33795") Annotation( "FMA:TA") Annotation( ) "basis ossis metacarpi") +AnnotationAssertion(Annotation( "FMA:33795") Annotation( "FMA:TA") Annotation( ) "basis ossis metacarpi") AnnotationAssertion(Annotation( "FMA:33795") "metacarpal bone base") AnnotationAssertion(Annotation( "FMA:33795") "proximal end of metacarpal bone") AnnotationAssertion(Annotation( "FMA:33795") "upper end of metacarpal bone") @@ -183407,12 +183064,12 @@ AnnotationAssertion(Annotation( "MA:th") "fore mesopodium") AnnotationAssertion( "hand mesopodium") AnnotationAssertion( "manus mesopodium") -AnnotationAssertion(Annotation( "FMA:24922") Annotation( "FMA:TA") Annotation( ) "regio carpalis") +AnnotationAssertion(Annotation( "FMA:24922") Annotation( "FMA:TA") Annotation( ) "regio carpalis") AnnotationAssertion(Annotation( "MA:0000039") "wrist") AnnotationAssertion( "wrist region") AnnotationAssertion(Annotation( "EMAPA:19122") "carpus of fore-paw") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Wrist") Annotation( ) "articulatio radiocarpea") +AnnotationAssertion(Annotation( "Wikipedia:Wrist") Annotation( ) "articulatio radiocarpea") AnnotationAssertion(Annotation( ) "carpus") AnnotationAssertion( "UBERON:0004452") AnnotationAssertion( ) @@ -183474,7 +183131,7 @@ AnnotationAssertion(Annotation( "ankle region") AnnotationAssertion( "tarsal limb segment") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ankle") Annotation( ) "articulatio talocruralis") +AnnotationAssertion(Annotation( "Wikipedia:Ankle") Annotation( ) "articulatio talocruralis") AnnotationAssertion(Annotation( "MA:th") "hind basipodium") AnnotationAssertion(Annotation( "MA:th") "hind mesopodium") AnnotationAssertion(Annotation( "Wikipedia:Hock_(anatomy)") Annotation( ) "hock") @@ -183529,7 +183186,7 @@ AnnotationAssertion( "FMA:71287") "head musculature") AnnotationAssertion(Annotation( "FMA:71287") "muscle group of head") AnnotationAssertion(Annotation( "FMA:71287") "muscles of head") -AnnotationAssertion(Annotation( "FMA:71287") Annotation( "FMA:TA") Annotation( ) "musculi capitis") +AnnotationAssertion(Annotation( "FMA:71287") Annotation( "FMA:TA") Annotation( ) "musculi capitis") AnnotationAssertion(Annotation( "FMA:71287") "set of muscles of head") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004461") @@ -183581,7 +183238,7 @@ AnnotationAssertion(Annotation( "FMA:71293") AnnotationAssertion(Annotation( "FMA:71293") "muscle group of thorax") AnnotationAssertion(Annotation( "FMA:71293") "muscles of thorax") -AnnotationAssertion(Annotation( "FMA:71293") Annotation( "FMA:TA") Annotation( ) "musculi thoracis") +AnnotationAssertion(Annotation( "FMA:71293") Annotation( "FMA:TA") Annotation( ) "musculi thoracis") AnnotationAssertion(Annotation( "FMA:71293") "set of muscles of thorax") AnnotationAssertion(Annotation( "FMA:71293") "thoracic musculature") AnnotationAssertion( "uberon") @@ -183600,8 +183257,8 @@ AnnotationAssertion( "AAO:0000091") "cervical muscles") AnnotationAssertion(Annotation( "FMA:71290") "muscle group of neck") AnnotationAssertion(Annotation( "FMA:71290") "muscles of neck") -AnnotationAssertion(Annotation( "FMA:71290") Annotation( "FMA:TA") Annotation( ) "musculi cervicis") -AnnotationAssertion(Annotation( "FMA:71290") Annotation( "FMA:TA") Annotation( ) "musculi colli") +AnnotationAssertion(Annotation( "FMA:71290") Annotation( "FMA:TA") Annotation( ) "musculi cervicis") +AnnotationAssertion(Annotation( "FMA:71290") Annotation( "FMA:TA") Annotation( ) "musculi colli") AnnotationAssertion(Annotation( "FMA:71290") "neck musculature") AnnotationAssertion(Annotation( "FMA:71290") "set of muscles of neck") AnnotationAssertion( "uberon") @@ -183653,7 +183310,7 @@ AnnotationAssertion(Annotation( "FMA:71291") AnnotationAssertion(Annotation( "FMA:71291") "muscle group of back") AnnotationAssertion(Annotation( "FMA:71291") "muscles of back") -AnnotationAssertion(Annotation( "FMA:71291") Annotation( "FMA:TA") Annotation( ) "musculi dorsi") +AnnotationAssertion(Annotation( "FMA:71291") Annotation( "FMA:TA") Annotation( ) "musculi dorsi") AnnotationAssertion(Annotation( "FMA:71291") "set of muscles of back") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004469") @@ -183709,7 +183366,7 @@ AnnotationAssertion( "https://orcid.org/0000-0002-6601-2165") "entire facial musculature") AnnotationAssertion(Annotation( "FMA:71288") "facial muscles") AnnotationAssertion(Annotation( "FMA:71288") "muscle group of face") -AnnotationAssertion(Annotation( "FMA:71288") Annotation( "FMA:TA") Annotation( ) "musculi faciei") +AnnotationAssertion(Annotation( "FMA:71288") Annotation( "FMA:TA") Annotation( ) "musculi faciei") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:71288") "set of facial muscles") AnnotationAssertion(Annotation( "FMA:71288") "set of muscles of face") @@ -184095,7 +183752,7 @@ AnnotationAssertion( "Wikipedia:Process_(anatomy)") AnnotationAssertion( "XAO:0004020") AnnotationAssertion( "galen:Ridge") -AnnotationAssertion(Annotation( "FMA:67601") Annotation( "FMA:TA") Annotation( ) "processus") +AnnotationAssertion(Annotation( "FMA:67601") Annotation( "FMA:TA") Annotation( ) "processus") AnnotationAssertion( "projection") AnnotationAssertion(Annotation( "VSAO:0000180") "flange") AnnotationAssertion(Annotation( "VSAO:0000180") Annotation( ) "flanges") @@ -184228,7 +183885,7 @@ AnnotationAssertion( "lymphatic vessel network") AnnotationAssertion(Annotation( "FMA:63815") "lymphatic vessels set") AnnotationAssertion( "set of lymphatic vessels") -AnnotationAssertion(Annotation( "FMA:63815") Annotation( "FMA:TA") Annotation( ) "trunci et ductus lymphatici") +AnnotationAssertion(Annotation( "FMA:63815") Annotation( "FMA:TA") Annotation( ) "trunci et ductus lymphatici") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "ZFA:0005105") Annotation( ) "lymph vessels") AnnotationAssertion( "UBERON:0004536") @@ -184362,6 +184019,7 @@ AnnotationAssertion( "EMAPA:18267") AnnotationAssertion( "FMA:14915") AnnotationAssertion( "MA:0002951") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D049630") AnnotationAssertion( "NCIT:C33009") AnnotationAssertion( "SCTID:267809009") AnnotationAssertion(Annotation( "ncithesaurus:Lower_Esophageal_Sphincter") "UMLS:C0227192") @@ -184373,7 +184031,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Cardia") Annotation( ) "LES") AnnotationAssertion(Annotation( "Wikipedia:Cardia") "cardiac sphincter") -AnnotationAssertion(Annotation( "MP:0010153") Annotation( ) "constrictor cardiae") +AnnotationAssertion(Annotation( "MP:0010153") Annotation( ) "constrictor cardiae") AnnotationAssertion(Annotation( "Wikipedia:Cardia") "esophageal sphincter") AnnotationAssertion(Annotation( "Wikipedia:Cardia") "esophageal sphincter%2c lower") AnnotationAssertion(Annotation( "Wikipedia:Cardia") "esophageal-cardiac junction") @@ -184544,7 +184202,7 @@ AnnotationAssertion(Annotation( "Biology-Online") "in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)") AnnotationAssertion(Annotation( "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern") "otic capsule skeletal element") AnnotationAssertion( "AAO:0010143") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0005981") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0005981") AnnotationAssertion( "SCTID:361515007") AnnotationAssertion( "VHOG:0000854") AnnotationAssertion(Annotation( "ZFA:0001500") "otic capsule") @@ -184565,6 +184223,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (blood vessel endothelium) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart.") +AnnotationAssertion( ) AnnotationAssertion( "BTO:0000766") AnnotationAssertion( "CALOHA:TS-2155") AnnotationAssertion( "EMAPA:35176") @@ -184575,6 +184234,7 @@ AnnotationAssertion(Annotation( "ZFA:0005257") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004638") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood vessel endothelium") @@ -184595,10 +184255,10 @@ AnnotationAssertion( "MA:0002579") "afferent arteriole") AnnotationAssertion(Annotation( "ZFA:0005307") "afferent glomerular arteriole") AnnotationAssertion(Annotation( "FMA:77042") "afferent glomerular arteriole of kidney") -AnnotationAssertion(Annotation( "FMA:77042") Annotation( "FMA:TA") Annotation( ) "arteriola glomerularis afferens renis") +AnnotationAssertion(Annotation( "FMA:77042") Annotation( "FMA:TA") Annotation( ) "arteriola glomerularis afferens renis") AnnotationAssertion(Annotation( "MP:0011312") "kidney afferent arteriole") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Afferent_arterioles") Annotation( ) "arteriola glomerularis afferens") +AnnotationAssertion(Annotation( "Wikipedia:Afferent_arterioles") Annotation( ) "arteriola glomerularis afferens") AnnotationAssertion( "UBERON:0004639") AnnotationAssertion( ) AnnotationAssertion( ) @@ -184624,13 +184284,13 @@ AnnotationAssertion( "TAO:0002140") AnnotationAssertion( "Wikipedia:Efferent_arteriole") AnnotationAssertion( "ZFA:0005308") -AnnotationAssertion(Annotation( "FMA:77043") Annotation( "FMA:TA") Annotation( ) "arteriola glomerularis efferens renis") +AnnotationAssertion(Annotation( "FMA:77043") Annotation( "FMA:TA") Annotation( ) "arteriola glomerularis efferens renis") AnnotationAssertion(Annotation( "MA:0002585") "efferent arteriole") AnnotationAssertion(Annotation( "ZFA:0005308") "efferent glomerular arteriole") AnnotationAssertion(Annotation( "FMA:77043") "efferent glomerular arteriole of kidney") AnnotationAssertion(Annotation( "MP:0011313") "kidney efferent arteriole") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Efferent_arteriole") Annotation( ) "arteriola glomerularis efferens capsulae renalis") +AnnotationAssertion(Annotation( "Wikipedia:Efferent_arteriole") Annotation( ) "arteriola glomerularis efferens capsulae renalis") AnnotationAssertion( "UBERON:0004640") AnnotationAssertion( ) AnnotationAssertion( ) @@ -184654,13 +184314,13 @@ AnnotationAssertion( "SCTID:329635002") AnnotationAssertion(Annotation( "ncithesaurus:Splenic_Capsule") "UMLS:C0229681") AnnotationAssertion(Annotation( "FMA:15849") "Malpighian capsule") -AnnotationAssertion(Annotation( "FMA:15849") Annotation( "FMA:TA") Annotation( ) "capsula splenica") +AnnotationAssertion(Annotation( "FMA:15849") Annotation( "FMA:TA") Annotation( ) "capsula splenica") AnnotationAssertion(Annotation( "FMA:15849") "capsule of spleen") AnnotationAssertion(Annotation( "FMA:15849") "fibroelastic coat of spleen") AnnotationAssertion(Annotation( "FMA:15849") "fibrous capsule of spleen") AnnotationAssertion(Annotation( "FMA:15849") "splenic capsule") AnnotationAssertion(Annotation( "FMA:15849") "tunica fibrosa (splen)(lien)") -AnnotationAssertion(Annotation( "FMA:15849") Annotation( "FMA:TA") Annotation( ) "tunica fibrosa splenica") +AnnotationAssertion(Annotation( "FMA:15849") Annotation( "FMA:TA") Annotation( ) "tunica fibrosa splenica") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004641") AnnotationAssertion( ) @@ -184743,10 +184403,10 @@ AnnotationAssertion(Annotation( "Wikipedia:Lobules_of_liver") AnnotationAssertion(Annotation( "FMA:14471") "hepatic lobule") AnnotationAssertion(Annotation( ) "lobuli hepatici") -AnnotationAssertion(Annotation( "FMA:14471") Annotation( ) "lobulus hepaticus") +AnnotationAssertion(Annotation( "FMA:14471") Annotation( ) "lobulus hepaticus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Lobules_of_liver") Annotation( ) "lobules of liver") -AnnotationAssertion(Annotation( "Wikipedia:Lobules_of_liver") Annotation( ) "lobuli hepatis") +AnnotationAssertion(Annotation( "Wikipedia:Lobules_of_liver") Annotation( ) "lobuli hepatis") AnnotationAssertion( "UBERON:0004647") AnnotationAssertion( ) AnnotationAssertion( ) @@ -184777,7 +184437,7 @@ AnnotationAssertion( "SCTID:181927007") AnnotationAssertion( "Wikipedia:Body_of_humerus") AnnotationAssertion(Annotation( "FMA:13305") "body of humerus") -AnnotationAssertion(Annotation( "FMA:13305") Annotation( "FMA:TA") Annotation( ) "corpus humeri") +AnnotationAssertion(Annotation( "FMA:13305") Annotation( "FMA:TA") Annotation( ) "corpus humeri") AnnotationAssertion(Annotation( "FMA:13305") "diaphysis of humerus") AnnotationAssertion(Annotation( "FMA:13305") "humeral diaphysis") AnnotationAssertion(Annotation( "FMA:13305") "shaft of humerus") @@ -184831,7 +184491,7 @@ AnnotationAssertion(Annotation( "FMA:19404") "muscular coat of seminal gland") AnnotationAssertion(Annotation( "FMA:19404") "muscular layer of seminal gland") AnnotationAssertion(Annotation( "FMA:19404") "tunica muscularis (vesicula seminalis)") -AnnotationAssertion(Annotation( "FMA:19404") Annotation( "FMA:TA") Annotation( ) "tunica muscularis glandulae vesiculosae") +AnnotationAssertion(Annotation( "FMA:19404") Annotation( "FMA:TA") Annotation( ) "tunica muscularis glandulae vesiculosae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004665") AnnotationAssertion(rdfs:label "muscular coat of seminal vesicle") @@ -184857,7 +184517,7 @@ AnnotationAssertion(Annotation( "FMA:7135") "membranous part of interventricular septum") AnnotationAssertion(Annotation( "FMA:7135") "membranous portion of interventricular septum") AnnotationAssertion(Annotation( "FMA:7135") "pars membranacea (septi interventricularis)") -AnnotationAssertion(Annotation( "FMA:7135") Annotation( "FMA:TA") Annotation( ) "pars membranacea septi interventricularis") +AnnotationAssertion(Annotation( "FMA:7135") Annotation( "FMA:TA") Annotation( ) "pars membranacea septi interventricularis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0002939") "membranous interventricular septum") AnnotationAssertion( "UBERON:0004666") @@ -184884,8 +184544,8 @@ AnnotationAssertion(Annotation( "muscular part interventricular septum") AnnotationAssertion(Annotation( "FMA:7134") "muscular part of interventricular septum") AnnotationAssertion(Annotation( "FMA:7134") "pars muscularis (septi interventricularis)") -AnnotationAssertion(Annotation( "FMA:7134") Annotation( "FMA:TA") Annotation( ) "pars muscularis septi interventricularis") -AnnotationAssertion(Annotation( ) "septum membranaceum") +AnnotationAssertion(Annotation( "FMA:7134") Annotation( "FMA:TA") Annotation( ) "pars muscularis septi interventricularis") +AnnotationAssertion(Annotation( ) "septum membranaceum") AnnotationAssertion( "ventricular muscular septum") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0002940") "muscular interventricular septum") @@ -184948,7 +184608,7 @@ AnnotationAssertion( "SCTID:280185007") AnnotationAssertion( "TAO:0000192") AnnotationAssertion( "ZFA:0000192") -AnnotationAssertion(Annotation( "ZFA:0000192") Annotation( ) "radix descendens nervi trigemini") +AnnotationAssertion(Annotation( "ZFA:0000192") Annotation( ) "radix descendens nervi trigemini") AnnotationAssertion(Annotation( "Obol:cjm") "root of trigeminal V nerve") AnnotationAssertion(Annotation( "FMA:52610") "root of trigeminal nerve") AnnotationAssertion(Annotation( "BIRNLEX:1346") "trigeminal nerve root") @@ -184976,7 +184636,7 @@ AnnotationAssertion(Annotation( "FMA:53418") "facial nerve fibers") AnnotationAssertion(Annotation( "BIRNLEX:1513") "facial nerve root") AnnotationAssertion(Annotation( "FMA:53418") "facial neural root") -AnnotationAssertion(Annotation( "FMA:53418") Annotation( "FMA:TA") Annotation( ) "fibrae nervi facialis") +AnnotationAssertion(Annotation( "FMA:53418") Annotation( "FMA:TA") Annotation( ) "fibrae nervi facialis") AnnotationAssertion(Annotation( "FMA:53418") "root of facial nerve") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:7n") "facial nerve or its root") @@ -185001,7 +184661,7 @@ AnnotationAssertion( "UMLS:C0175555") AnnotationAssertion( "neuronames:798") AnnotationAssertion(Annotation( "FMA:72632") "central part of hypoglossal nerve") -AnnotationAssertion(Annotation( "FMA:72632") Annotation( "FMA:TA") Annotation( ) "fibrae nervi hypoglossi") +AnnotationAssertion(Annotation( "FMA:72632") Annotation( "FMA:TA") Annotation( ) "fibrae nervi hypoglossi") AnnotationAssertion(Annotation( "BIRNLEX:1288") Annotation( ) "hypoglossal nerve fiber bundle") AnnotationAssertion(Annotation( "FMA:72632") "hypoglossal nerve fibers") AnnotationAssertion(Annotation( "BIRNLEX:1588") "hypoglossal nerve root") @@ -185031,7 +184691,7 @@ AnnotationAssertion( "neuronames:2121") AnnotationAssertion(Annotation( "BIRNLEX:4127") "dentate gyrus molecular layer") AnnotationAssertion(Annotation( "FMA:83677") "molecular layer of dentate gyrus") -AnnotationAssertion(Annotation( "FMA:83677") Annotation( "FMA:TA") Annotation( ) "stratum moleculare gyri dentati") +AnnotationAssertion(Annotation( "FMA:83677") Annotation( "FMA:TA") Annotation( ) "stratum moleculare gyri dentati") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:Mol") "molecular layer of the dentate gyrus") AnnotationAssertion( "UBERON:0004679") @@ -185079,11 +184739,11 @@ AnnotationAssertion(Annotation( "Wikipedia:Raphe_nuclei") AnnotationAssertion( "ZFA:0001429") AnnotationAssertion( "neuronames:2495") -AnnotationAssertion(Annotation( "FMA:84017") Annotation( "FMA:TA") Annotation( ) "nuclei raphes") +AnnotationAssertion(Annotation( "FMA:84017") Annotation( "FMA:TA") Annotation( ) "nuclei raphes") AnnotationAssertion(Annotation( "FMA:84017") Annotation( "NLXANAT:20090205") "raphe nuclei") AnnotationAssertion(Annotation( "FMA:84017") "raphe nuclei set") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Raphe_nuclei") Annotation( ) "nuclei raphes") +AnnotationAssertion(Annotation( "Wikipedia:Raphe_nuclei") Annotation( ) "nuclei raphes") AnnotationAssertion(Annotation( "Wikipedia:Raphe_nuclei") "raphe cluster") AnnotationAssertion(Annotation( "ZFA:0001429") "raphe nucleus") AnnotationAssertion(Annotation( "BAMS:RA") "raphe of mesenchephalon") @@ -185109,7 +184769,7 @@ AnnotationAssertion( "FMA:10636") "costocervical trunk") AnnotationAssertion(Annotation( "FMA:10636") "trunk of costocervical artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Costocervical_trunk") Annotation( ) "truncus costocervicalis") +AnnotationAssertion(Annotation( "Wikipedia:Costocervical_trunk") Annotation( ) "truncus costocervicalis") AnnotationAssertion( "UBERON:0004688") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "costo-cervical trunk") @@ -185258,7 +184918,7 @@ AnnotationAssertion( "neuronames:1455") AnnotationAssertion(Annotation( "FMA:62007") "dorsal thalamus") AnnotationAssertion(Annotation( "FMA:62007") "dorsal thalamus (Anthoney)") -AnnotationAssertion(Annotation( "BTO:0001365") Annotation( "Wikipedia:Thalamus") Annotation( ) "thalamus dorsalis") +AnnotationAssertion(Annotation( "BTO:0001365") Annotation( "Wikipedia:Thalamus") Annotation( ) "thalamus dorsalis") AnnotationAssertion(Annotation( "PMCID:PMC3345571") "thalamus proper") AnnotationAssertion(Annotation( "ZFA:0000653") "thalamus, pars dorsalis") AnnotationAssertion( "uberon") @@ -185492,7 +185152,7 @@ AnnotationAssertion( "MP:0011325") "arciform vein of kidney") AnnotationAssertion(Annotation( "MP:0011325") "arcuate vein of kidney") AnnotationAssertion(Annotation( "MP:0011325") "renal arcuate vein") -AnnotationAssertion(Annotation( "Wikipedia:Arcuate_vein") Annotation( ) "venae arcuatae renis") +AnnotationAssertion(Annotation( "Wikipedia:Arcuate_vein") Annotation( ) "venae arcuatae renis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Arcuate_vein") "arcuate veins") AnnotationAssertion( "UBERON:0004719") @@ -185541,8 +185201,8 @@ AnnotationAssertion( "FMA:70498") "interlobular renal artery") AnnotationAssertion(Annotation( "MP:0011316") "kidney interlobular artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Interlobular_arteries") Annotation( ) "arteriae corticales radiatae") -AnnotationAssertion(Annotation( "Wikipedia:Interlobular_arteries") Annotation( ) "arteriae interlobulares renis") +AnnotationAssertion(Annotation( "Wikipedia:Interlobular_arteries") Annotation( ) "arteriae corticales radiatae") +AnnotationAssertion(Annotation( "Wikipedia:Interlobular_arteries") Annotation( ) "arteriae interlobulares renis") AnnotationAssertion(Annotation( "Wikipedia:Interlobular_arteries") "cortical radial arteries") AnnotationAssertion(Annotation( "Wikipedia:Interlobular_arteries") "interlobular") AnnotationAssertion(Annotation( "FMA:70498") "renal interlobular artery") @@ -185574,20 +185234,20 @@ AnnotationAssertion( "BIRNLEX:1097") "UMLS:C0228280") AnnotationAssertion( "Wikipedia:Piriform_cortex") AnnotationAssertion(Annotation( "BIRNLEX:1097") "neuronames:165") -AnnotationAssertion(Annotation( "Wikipedia:Piriform_cortex") Annotation( ) "cortex piriformis") +AnnotationAssertion(Annotation( "Wikipedia:Piriform_cortex") Annotation( ) "cortex piriformis") AnnotationAssertion(Annotation( "BIRNLEX:2706") "primary olfactory areas") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "area prepiriformis") -AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "eupalaeocortex") +AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "area prepiriformis") +AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "eupalaeocortex") AnnotationAssertion(Annotation( "ISBN:0471888893") "olfactory pallium") -AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "palaeocortex II") +AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "palaeocortex II") AnnotationAssertion(Annotation( "Wikipedia:Piriform_cortex") "paleopallium") AnnotationAssertion(Annotation( "BTO:0002651") Annotation( "MA:0000978") "piriform area") AnnotationAssertion(Annotation( "BTO:0002651") "piriform lobe") AnnotationAssertion(Annotation( "Wikipedia:Piriform_cortex") Annotation( ) "primary olfactory cortex") AnnotationAssertion(Annotation( "Wikipedia:Piriform_cortex") "pyriform cortex") AnnotationAssertion(Annotation( "Wikipedia:Piriform_cortex") "pyriform lobe") -AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "regio praepiriformis") +AnnotationAssertion(Annotation( "NeuroNames:165") Annotation( ) "regio praepiriformis") AnnotationAssertion( "UBERON:0004725") AnnotationAssertion( ) AnnotationAssertion( ) @@ -185610,17 +185270,17 @@ AnnotationAssertion( "MA:0002595") AnnotationAssertion( "Wikipedia:Vasa_recta") AnnotationAssertion( "galen:ArteriaeRectae") -AnnotationAssertion(Annotation( "FMA:72006") Annotation( "FMA:TA") Annotation( ) "arteriolae rectae renis") +AnnotationAssertion(Annotation( "FMA:72006") Annotation( "FMA:TA") Annotation( ) "arteriolae rectae renis") AnnotationAssertion(Annotation( "MP:0011324") "kidney vasa recta") AnnotationAssertion(Annotation( "EMAPA:30043") "renal medullary capillary") AnnotationAssertion(Annotation( "FMA:72006") "set of straight arterioles of kidney") AnnotationAssertion(Annotation( "FMA:72006") "straight arterioles of kidney") AnnotationAssertion(Annotation( "FMA:72006") "vasa recta of kidney") -AnnotationAssertion(Annotation( "FMA:72006") Annotation( "FMA:TA") Annotation( ) "vasa recta renis") +AnnotationAssertion(Annotation( "FMA:72006") Annotation( "FMA:TA") Annotation( ) "vasa recta renis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Vasa_recta") "arteria recta") AnnotationAssertion(Annotation( "Wikipedia:Vasa_recta") "arteriae rectae") -AnnotationAssertion(Annotation( "Wikipedia:Vasa_recta") Annotation( ) "arteriolae rectae renis") +AnnotationAssertion(Annotation( "Wikipedia:Vasa_recta") Annotation( ) "arteriolae rectae renis") AnnotationAssertion(Annotation( "Wikipedia:Vasa_recta") "arteriolae recti") AnnotationAssertion(Annotation( "Wikipedia:Vasa_recta") "vasa rectae") AnnotationAssertion( "UBERON:0004726") @@ -185717,7 +185377,7 @@ AnnotationAssertion(Annotation( "UBERON:0007012") AnnotationAssertion( "BILA:0000060") AnnotationAssertion( "BTO:0001403") -AnnotationAssertion( "FBbt:00005317") +AnnotationAssertion(Annotation( ) "FBbt:00005317") AnnotationAssertion( "FMA:293108") AnnotationAssertion( "GAID:1302") AnnotationAssertion( "MESH:D005775") @@ -186262,7 +185922,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of gall bladder") AnnotationAssertion(Annotation( "OBOL:automatic") "serous membrane of gallbladder") AnnotationAssertion(Annotation( "FMA:14659") "tunica serosa (vesica biliaris)") -AnnotationAssertion(Annotation( "FMA:14659") Annotation( "FMA:TA") Annotation( ) "tunica serosa vesicae biliaris") +AnnotationAssertion(Annotation( "FMA:14659") Annotation( "FMA:TA") Annotation( ) "tunica serosa vesicae biliaris") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0001634") "biliary serosa") AnnotationAssertion( "UBERON:0004783") @@ -187348,7 +187008,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "retinal vasculature") AnnotationAssertion(Annotation( "OBOL:automatic") "set of blood vessels of retina") AnnotationAssertion(Annotation( "FMA:76552") "set of retinal blood vessels") -AnnotationAssertion(Annotation( "FMA:76552") Annotation( "FMA:TA") Annotation( ) "vasa sanguinea retinae") +AnnotationAssertion(Annotation( "FMA:76552") Annotation( "FMA:TA") Annotation( ) "vasa sanguinea retinae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004864") AnnotationAssertion( ) @@ -187479,7 +187139,7 @@ AnnotationAssertion( "ncithesaurus:Nephrogenic_Cord") "UMLS:C1283944") AnnotationAssertion( "Wikipedia:Nephrogenic_cord") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nephrogenic_cord") Annotation( ) "chorda nephrogenica") +AnnotationAssertion(Annotation( "Wikipedia:Nephrogenic_cord") Annotation( ) "chorda nephrogenica") AnnotationAssertion( "UBERON:0004875") AnnotationAssertion(rdfs:comment "part_of or develops_from urogenital ridge?") AnnotationAssertion(rdfs:label "nephrogenic cord") @@ -187665,7 +187325,7 @@ AnnotationAssertion( "BTO:0000966") "optic nerve") AnnotationAssertion( "BTO:0000966") AnnotationAssertion( "EV:0100351") -AnnotationAssertion( "FBbt:00001956") +AnnotationAssertion(Annotation( ) "FBbt:00001956") AnnotationAssertion( "TADS:0000232") AnnotationAssertion( "optic nerve (generic)") AnnotationAssertion( "uberon") @@ -187681,7 +187341,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (articulation) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts.") -AnnotationAssertion( "FBbt:00005811") +AnnotationAssertion(Annotation( ) "FBbt:00005811") AnnotationAssertion( "joint") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004905") @@ -187815,14 +187475,14 @@ AnnotationAssertion( "ZFA:0005167") AnnotationAssertion( "galen:AmpullaOfVater") AnnotationAssertion( "Vater's ampulla") -AnnotationAssertion(Annotation( "FMA:15076") Annotation( "FMA:TA") Annotation( ) "ampulla biliaropancreatica") +AnnotationAssertion(Annotation( "FMA:15076") Annotation( "FMA:TA") Annotation( ) "ampulla biliaropancreatica") AnnotationAssertion( "ampulla of Vater") AnnotationAssertion(Annotation( "FMA:15076") "ampulla of bile duct") AnnotationAssertion( "biliaropancreatic ampulla") AnnotationAssertion(Annotation( "ZFA:0005167") "papilla Vateri") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Ampulla_of_Vater") Annotation( ) "ampulla Vaterii") -AnnotationAssertion(Annotation( "Wikipedia:Ampulla_of_Vater") Annotation( ) "ampulla hepatopancreatica") +AnnotationAssertion(Annotation( "Wikipedia:Ampulla_of_Vater") Annotation( ) "ampulla Vaterii") +AnnotationAssertion(Annotation( "Wikipedia:Ampulla_of_Vater") Annotation( ) "ampulla hepatopancreatica") AnnotationAssertion(Annotation( "ZFA:0005167") "papilla duodeni major") AnnotationAssertion( "UBERON:0004913") AnnotationAssertion( ) @@ -187842,7 +187502,7 @@ AnnotationAssertion( "papilla duodenalis") AnnotationAssertion( "papilla of duodenum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Major_duodenal_papilla") Annotation( ) "papilla duodeni") +AnnotationAssertion(Annotation( "Wikipedia:Major_duodenal_papilla") Annotation( ) "papilla duodeni") AnnotationAssertion( "UBERON:0004914") AnnotationAssertion(rdfs:label "duodenal papilla") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png"^^xsd:anyURI) @@ -187865,7 +187525,7 @@ AnnotationAssertion( "Oddi's sphincter") AnnotationAssertion(Annotation( "FMA:15077") "hepatopancreatic ampullary sphincter") AnnotationAssertion(Annotation( "FMA:15077") "musculus sphincter ampullae") -AnnotationAssertion(Annotation( "FMA:15077") Annotation( "FMA:TA") Annotation( ) "musculus sphincter ampullae hepatopancreatica") +AnnotationAssertion(Annotation( "FMA:15077") Annotation( "FMA:TA") Annotation( ) "musculus sphincter ampullae hepatopancreatica") AnnotationAssertion( "sphincter of Oddi") AnnotationAssertion(Annotation( "FMA:15077") "sphincter of ampulla of vater") AnnotationAssertion( "uberon") @@ -187910,7 +187570,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A proximal-distal subdivision of the digestive tract.") AnnotationAssertion( "intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct.") AnnotationAssertion( ) -AnnotationAssertion( "FBbt:00100315") +AnnotationAssertion(Annotation( ) "FBbt:00100315") AnnotationAssertion( "FMA:71131") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:71131") "alimentary system subdivision") @@ -187945,8 +187605,8 @@ AnnotationAssertion( "SCTID:19594009") AnnotationAssertion(Annotation( "FMA:75144") "pharyngeal submucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "pharynx submucosa") -AnnotationAssertion(Annotation( "FMA:75144") Annotation( "FMA:TA") Annotation( ) "tela submucosa pharyngea") -AnnotationAssertion(Annotation( "BTO:0002113") Annotation( ) "tela submucosa pharyngis") +AnnotationAssertion(Annotation( "FMA:75144") Annotation( "FMA:TA") Annotation( ) "tela submucosa pharyngea") +AnnotationAssertion(Annotation( "BTO:0002113") Annotation( ) "tela submucosa pharyngis") AnnotationAssertion( "uberon") AnnotationAssertion( "pharyngobasilar fascia") AnnotationAssertion(Annotation( "BTO:0002113") "submucous coat of pharynx") @@ -188191,8 +187851,8 @@ AnnotationAssertion( "SCTID:88384001") AnnotationAssertion(Annotation( "OBOL:automatic") "bladder submucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "submucosa of bladder") -AnnotationAssertion(Annotation( "FMA:15929") Annotation( "FMA:TA") Annotation( ) "tela submucosa (vesica urinaria)") -AnnotationAssertion(Annotation( "FMA:15929") Annotation( "FMA:TA") Annotation( ) "tela submucosa vesicae") +AnnotationAssertion(Annotation( "FMA:15929") Annotation( "FMA:TA") Annotation( ) "tela submucosa (vesica urinaria)") +AnnotationAssertion(Annotation( "FMA:15929") Annotation( "FMA:TA") Annotation( ) "tela submucosa vesicae") AnnotationAssertion(Annotation( "BTO:0002117") "tela submucosa vesicae urinariae") AnnotationAssertion(Annotation( "OBOL:automatic") "urinary bladder submucosa") AnnotationAssertion( "uberon") @@ -188306,7 +187966,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "mucous membrane of ureter") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of ureter") AnnotationAssertion(Annotation( "FMA:15894") "tunica mucosa (ureter)") -AnnotationAssertion(Annotation( "FMA:15894") Annotation( "FMA:TA") Annotation( ) "tunica mucosa ureteris") +AnnotationAssertion(Annotation( "FMA:15894") Annotation( "FMA:TA") Annotation( ) "tunica mucosa ureteris") AnnotationAssertion(Annotation( "OBOL:automatic") "ureter mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "ureter mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "ureter mucous membrane") @@ -188328,7 +187988,7 @@ AnnotationAssertion( "OBOL:automatic") "mucosa of organ of vagina") AnnotationAssertion(Annotation( "OBOL:automatic") "mucous membrane of vagina") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of vagina") -AnnotationAssertion(Annotation( "FMA:19975") Annotation( "FMA:TA") Annotation( ) "tunica mucosa vaginae") +AnnotationAssertion(Annotation( "FMA:19975") Annotation( "FMA:TA") Annotation( ) "tunica mucosa vaginae") AnnotationAssertion(Annotation( "OBOL:automatic") "vagina mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "vagina mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "vagina mucous membrane") @@ -188359,7 +188019,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "seminal vesicle mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "seminal vesicle mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "seminal vesicle organ mucosa") -AnnotationAssertion(Annotation( "FMA:19405") Annotation( "FMA:TA") Annotation( ) "tunica mucosa glandulae vesiculosae") +AnnotationAssertion(Annotation( "FMA:19405") Annotation( "FMA:TA") Annotation( ) "tunica mucosa glandulae vesiculosae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0004984") AnnotationAssertion(rdfs:label "mucosa of seminal vesicle") @@ -188420,7 +188080,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "sperm duct mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "sperm duct organ mucosa") AnnotationAssertion(Annotation( "FMA:19240") "tunica mucosa (ductus deferens)") -AnnotationAssertion(Annotation( "FMA:19240") Annotation( "FMA:TA") Annotation( ) "tunica mucosa ductus deferentis") +AnnotationAssertion(Annotation( "FMA:19240") Annotation( "FMA:TA") Annotation( ) "tunica mucosa ductus deferentis") AnnotationAssertion(Annotation( "OBOL:automatic") "vas deferen mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "vas deferen mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "vas deferen mucous membrane") @@ -188925,7 +188585,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "renal pelvis mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "renal pelvis mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "renal pelvis organ mucosa") -AnnotationAssertion(Annotation( "FMA:17931") Annotation( "FMA:TA") Annotation( ) "tunica mucosa pelvis renalis") +AnnotationAssertion(Annotation( "FMA:17931") Annotation( "FMA:TA") Annotation( ) "tunica mucosa pelvis renalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005006") AnnotationAssertion(rdfs:label "mucosa of renal pelvis") @@ -189152,7 +188812,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "prostatic urethra mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "prostatic urethra organ mucosa") AnnotationAssertion(Annotation( "FMA:77079") "prostatic urethral mucosa") -AnnotationAssertion(Annotation( "FMA:77079") Annotation( "FMA:TA") Annotation( ) "tunica mucosa urethrae prosticae") +AnnotationAssertion(Annotation( "FMA:77079") Annotation( "FMA:TA") Annotation( ) "tunica mucosa urethrae prosticae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005015") AnnotationAssertion(rdfs:label "mucosa of prostatic urethra") @@ -189188,7 +188848,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "tongue mucosa of organ") AnnotationAssertion(Annotation( "OBOL:automatic") "tongue mucous membrane") AnnotationAssertion(Annotation( "OBOL:automatic") "tongue organ mucosa") -AnnotationAssertion(Annotation( "FMA:54807") Annotation( "FMA:TA") Annotation( ) "tunica mucosa linguae") +AnnotationAssertion(Annotation( "FMA:54807") Annotation( "FMA:TA") Annotation( ) "tunica mucosa linguae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005020") AnnotationAssertion( ) @@ -189241,7 +188901,7 @@ AnnotationAssertion(Annotation( "FMA:59663") "mucosa of tympanic cavity") AnnotationAssertion(Annotation( "OBOL:automatic") "mucous membrane of middle ear") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of middle ear") -AnnotationAssertion(Annotation( "FMA:59663") Annotation( "FMA:TA") Annotation( ) "tunica mucosa cavitatis tympanicae") +AnnotationAssertion(Annotation( "FMA:59663") Annotation( "FMA:TA") Annotation( ) "tunica mucosa cavitatis tympanicae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005026") AnnotationAssertion(rdfs:label "mucosa of middle ear") @@ -189325,7 +188985,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of gall bladder") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of gallbladder") AnnotationAssertion(Annotation( "FMA:14662") "tunica mucosa (vesica biliaris)") -AnnotationAssertion(Annotation( "FMA:14662") Annotation( "FMA:TA") Annotation( ) "tunica mucosa vesicae biliaris") +AnnotationAssertion(Annotation( "FMA:14662") Annotation( "FMA:TA") Annotation( ) "tunica mucosa vesicae biliaris") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005033") AnnotationAssertion(rdfs:label "mucosa of gallbladder") @@ -189495,7 +189155,7 @@ AnnotationAssertion(Annotation( "OBOL:automatic") "mucous membrane of uterine tube") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of fallopian tube") AnnotationAssertion(Annotation( "OBOL:automatic") "organ mucosa of uterine tube") -AnnotationAssertion(Annotation( "FMA:18319") Annotation( "FMA:TA") Annotation( ) "tunica mucosa tubae uterinae") +AnnotationAssertion(Annotation( "FMA:18319") Annotation( "FMA:TA") Annotation( ) "tunica mucosa tubae uterinae") AnnotationAssertion(Annotation( "FMA:18319") "uterine tubal mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "uterine tube mucosa") AnnotationAssertion(Annotation( "OBOL:automatic") "uterine tube mucosa of organ") @@ -189648,7 +189308,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (left ventricular trabecular myocardium) -AnnotationAssertion(Annotation( "GO:0003225") ".") +AnnotationAssertion(Annotation( "GO:0003225") "Missing definition for term UBERON:0005064. Please replace it using linked reference.") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005064") AnnotationAssertion(rdfs:label "left ventricular trabecular myocardium") @@ -189657,7 +189317,7 @@ SubClassOf(Annotation( "GO" # Class: (right ventricular trabecular myocardium) -AnnotationAssertion(Annotation( "GO:0003227") ".") +AnnotationAssertion(Annotation( "GO:0003227") "Missing definition for term UBERON:0005066. Please replace it using linked reference.") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005066") AnnotationAssertion(rdfs:label "right ventricular trabecular myocardium") @@ -189844,7 +189504,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (kidney rudiment) -AnnotationAssertion(Annotation( "GO:0072003") ".") +AnnotationAssertion(Annotation( "GO:0072003") "Missing definition for term UBERON:0005095. Please replace it using linked reference.") AnnotationAssertion( "class added for consistency with GO - consider merging with kidney mesenchyme.") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "GOC:mtg_kidney_jan10") "kidney anlage") @@ -189898,7 +189558,7 @@ AnnotationAssertion( "MA:0002610") "connecting tubule") AnnotationAssertion(Annotation( "MA:0002610") "kidney connecting tubule") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Connecting_tubule") Annotation( ) "tubulus renalis arcuatus") +AnnotationAssertion(Annotation( "Wikipedia:Connecting_tubule") Annotation( ) "tubulus renalis arcuatus") AnnotationAssertion( "UBERON:0005097") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal connecting tubule") @@ -190319,7 +189979,7 @@ SubClassOf(Annotation( "AEO AnnotationAssertion(Annotation( "GO:0007424") "An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster.") AnnotationAssertion(Annotation( "FBbt:00005024") Annotation( ) "tracheal system") AnnotationAssertion( "BTO:0003870") -AnnotationAssertion( "FBbt:00005024") +AnnotationAssertion(Annotation( ) "FBbt:00005024") AnnotationAssertion( "SPD:0000427") AnnotationAssertion( "TADS:0000043") AnnotationAssertion( "invertebrate tracheal system") @@ -190378,7 +190038,7 @@ AnnotationAssertion(Annotation( "CARO") Annotation( "FMA") "we go with the FMA classification rather than the CARO one. FMA def: 'Anatomical cluster which has as direct parts cell parts from two or more cells.'") AnnotationAssertion( "AAO:0011000") AnnotationAssertion( "CARO:0001000") -AnnotationAssertion( "FBbt:00007060") +AnnotationAssertion(Annotation( ) "FBbt:00007060") AnnotationAssertion( "FMA:83115") AnnotationAssertion(Annotation( "CARO:0001000") "multi-cell-component structure") AnnotationAssertion(Annotation( "CARO:0001000") "multi-cell-part structure") @@ -190442,11 +190102,11 @@ AnnotationAssertion( "MA:0002594") AnnotationAssertion( "Wikipedia:Interlobular_veins") AnnotationAssertion(Annotation( "MA:0002594") "interlobular vein") -AnnotationAssertion(Annotation( "FMA:71634") Annotation( "FMA:TA") Annotation( ) "venae interlobulares renis") +AnnotationAssertion(Annotation( "FMA:71634") Annotation( "FMA:TA") Annotation( ) "venae interlobulares renis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:71634") "interlobular veins of kidney") AnnotationAssertion(Annotation( "FMA:71634") "set of interlobular veins of kidney") -AnnotationAssertion(Annotation( "Wikipedia:Interlobular_veins") Annotation( ) "venae interlobulares renis") +AnnotationAssertion(Annotation( "Wikipedia:Interlobular_veins") Annotation( ) "venae interlobulares renis") AnnotationAssertion( "UBERON:0005168") AnnotationAssertion( ) AnnotationAssertion( ) @@ -190599,7 +190259,7 @@ AnnotationAssertion(Annotation( "MP:0010747") "enamel organ") AnnotationAssertion( "uberon") AnnotationAssertion( "odontogenic organ") -AnnotationAssertion(Annotation( "Wikipedia:Enamel_organ") Annotation( ) "organum enameleum") +AnnotationAssertion(Annotation( "Wikipedia:Enamel_organ") Annotation( ) "organum enameleum") AnnotationAssertion( "UBERON:0005176") AnnotationAssertion( ) AnnotationAssertion( ) @@ -190703,7 +190363,7 @@ AnnotationAssertion( "MA:0001940") AnnotationAssertion( "SCTID:279659005") AnnotationAssertion( "Wikipedia:Artery_to_the_ductus_deferens") -AnnotationAssertion(Annotation( "Wikipedia:Artery_to_the_ductus_deferens") Annotation( ) "arteria ductus deferentis") +AnnotationAssertion(Annotation( "Wikipedia:Artery_to_the_ductus_deferens") Annotation( ) "arteria ductus deferentis") AnnotationAssertion(Annotation( "FMA:18930") "artery of ductus deferens") AnnotationAssertion(Annotation( "FMA:18930") "ductus deferens artery") AnnotationAssertion( "vas deferens artery") @@ -191482,7 +191142,7 @@ AnnotationAssertion(Annotation( "FMA:242675") "ventricular system of neuraxis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Ventricular_system") "ventricle system") -AnnotationAssertion(Annotation( "Wikipedia:Ventricular_system") Annotation( ) "ventriculi cerebri") +AnnotationAssertion(Annotation( "Wikipedia:Ventricular_system") Annotation( ) "ventriculi cerebri") AnnotationAssertion( "UBERON:0005281") AnnotationAssertion( ) AnnotationAssertion( ) @@ -191545,9 +191205,9 @@ AnnotationAssertion(Annotation( "tela chorioidea fourth ventricle") AnnotationAssertion( "tela choroidea fourth ventricle") AnnotationAssertion( "tela choroidea of fourth ventricle") -AnnotationAssertion(Annotation( "FMA:78493") Annotation( "FMA:TA") Annotation( ) "tela choroidea ventriculi quarti") +AnnotationAssertion(Annotation( "FMA:78493") Annotation( "FMA:TA") Annotation( ) "tela choroidea ventriculi quarti") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Tela_chorioidea_of_fourth_ventricle") Annotation( ) "tela choroidea ventriculi quarti") +AnnotationAssertion(Annotation( "Wikipedia:Tela_chorioidea_of_fourth_ventricle") Annotation( ) "tela choroidea ventriculi quarti") AnnotationAssertion( "UBERON:0005287") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tela choroidea of fourth ventricle") @@ -191567,7 +191227,7 @@ AnnotationAssertion( "tela chorioidea of lateral ventricle") AnnotationAssertion( "tela chorioidea of telencephalic ventricle") AnnotationAssertion(Annotation( "ZFA:0005160") "tela chorioidea telencephalic ventricle") -AnnotationAssertion(Annotation( "FMA:83712") Annotation( "FMA:TA") Annotation( ) "tela choroidea (ventriculi lateralis)") +AnnotationAssertion(Annotation( "FMA:83712") Annotation( "FMA:TA") Annotation( ) "tela choroidea (ventriculi lateralis)") AnnotationAssertion(Annotation( "FMA:83712") "tela choroidea of lateral ventricle") AnnotationAssertion( "tela choroidea telencephalic ventricle") AnnotationAssertion( "uberon") @@ -191593,7 +191253,7 @@ AnnotationAssertion( "EMAPA:17082") AnnotationAssertion( "HBA:9512") AnnotationAssertion( "MA:0000205") -AnnotationAssertion( "MESH:D054024") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D054024") AnnotationAssertion( "VHOG:0000456") AnnotationAssertion( "Wikipedia:Myelencephalon") AnnotationAssertion( "uberon") @@ -191658,7 +191318,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Gonadal_ridge") "gonadal ridge") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "indifferent gonadal ridge") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Gonadal_ridge") Annotation( ) "crista gonadalis") +AnnotationAssertion(Annotation( "Wikipedia:Gonadal_ridge") Annotation( ) "crista gonadalis") AnnotationAssertion(Annotation( "MP:0011411") "genital cord") AnnotationAssertion( "UBERON:0005294") AnnotationAssertion( ) @@ -191851,7 +191511,7 @@ EquivalentClasses( ObjectIntersec # Class: (mesonephric smooth muscle tissue) -AnnotationAssertion(Annotation( "GO:0061214") ".") +AnnotationAssertion(Annotation( "GO:0061214") "Missing definition for term UBERON:0005321. Please replace it using linked reference.") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005321") AnnotationAssertion(rdfs:label "mesonephric smooth muscle tissue") @@ -192054,6 +191714,7 @@ AnnotationAssertion( "DHBA:10515") AnnotationAssertion( "EMAPA:32711") AnnotationAssertion( "MBA:695") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D002540") AnnotationAssertion( "PBA:294021914") AnnotationAssertion( "neuronames:2702") AnnotationAssertion( "cerebral cortex cortical plate") @@ -192078,7 +191739,7 @@ AnnotationAssertion( "ncithesaurus:Spermatic_Cord") "UMLS:C0037855") AnnotationAssertion( "Wikipedia:Spermatic_cord") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Spermatic_cord") Annotation( ) "funiculus spermaticus") +AnnotationAssertion(Annotation( "Wikipedia:Spermatic_cord") Annotation( ) "funiculus spermaticus") AnnotationAssertion( "spermatic chord") AnnotationAssertion( "UBERON:0005352") AnnotationAssertion( ) @@ -192260,9 +191921,9 @@ AnnotationAssertion(Annotation( "BIRNLEX:4113") "polymorphic layer of hippocampus") AnnotationAssertion(Annotation( "BIRNLEX:4113") "polymorphic layer of the hippocampus") AnnotationAssertion(Annotation( "BIRNLEX:4113") "stratum oriens") -AnnotationAssertion(Annotation( "FMA:83893") Annotation( "FMA:TA") Annotation( ) "stratum oriens hippocampi") +AnnotationAssertion(Annotation( "FMA:83893") Annotation( "FMA:TA") Annotation( ) "stratum oriens hippocampi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:157") Annotation( ) "gyrus cuneus") +AnnotationAssertion(Annotation( "NeuroNames:157") Annotation( ) "gyrus cuneus") AnnotationAssertion( "UBERON:0005371") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hippocampus stratum oriens") @@ -192280,7 +191941,7 @@ AnnotationAssertion( "BIRNLEX:1298") "neuronames:158") AnnotationAssertion(Annotation( "FMA:83894") "radiate layer of hippocampus") AnnotationAssertion(Annotation( "BIRNLEX:1298") "stratum radiatum") -AnnotationAssertion(Annotation( "FMA:83894") Annotation( "FMA:TA") Annotation( ) "stratum radiatum hippocampi") +AnnotationAssertion(Annotation( "FMA:83894") Annotation( "FMA:TA") Annotation( ) "stratum radiatum hippocampi") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:Rad") "stratum radiatum of the hippocampus") AnnotationAssertion( "UBERON:0005372") @@ -192390,7 +192051,7 @@ AnnotationAssertion( "neuronames:2122") AnnotationAssertion(Annotation( "BIRNLEX:4129") "DG granule cell layer") AnnotationAssertion(Annotation( "FMA:83146") "granular layer of dentate gyrus") -AnnotationAssertion(Annotation( "FMA:83146") Annotation( "FMA:TA") Annotation( ) "stratum granulare gyri dentati") +AnnotationAssertion(Annotation( "FMA:83146") Annotation( "FMA:TA") Annotation( ) "stratum granulare gyri dentati") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:DG-sg") "dentate gyrus, granule cell layer") AnnotationAssertion(Annotation( "BAMS:GrDG") "granular layer of the dentate gyrus") @@ -192528,9 +192189,9 @@ AnnotationAssertion(Annotation( "olfactory mucosa") AnnotationAssertion(Annotation( "FMA:77199") "olfactory part of nasal mucosa") AnnotationAssertion(Annotation( "FMA:77199") "olfactory zone of nasal mucosa") -AnnotationAssertion(Annotation( "FMA:77199") Annotation( "FMA:TA") Annotation( ) "pars olfactoria tunicae mucosae nasi") +AnnotationAssertion(Annotation( "FMA:77199") Annotation( "FMA:TA") Annotation( ) "pars olfactoria tunicae mucosae nasi") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Olfactory_mucosa") Annotation( ) "pars olfactoria tunicae mucosae nasi") +AnnotationAssertion(Annotation( "Wikipedia:Olfactory_mucosa") Annotation( ) "pars olfactoria tunicae mucosae nasi") AnnotationAssertion( "UBERON:0005386") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "olfactory segment of nasal mucosa") @@ -192540,7 +192201,7 @@ DisjointClasses( (photoreceptor array) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "An array of photoreceptors and any supporting cells found in an eye.") -AnnotationAssertion( "FBbt:00004200") +AnnotationAssertion(Annotation( ) "FBbt:00004200") AnnotationAssertion( "light-sensitive tissue") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005388") @@ -192575,7 +192236,7 @@ AnnotationAssertion( "ncithesaurus:Molecular_Layer") "UMLS:C1709063") AnnotationAssertion( "neuronames:2444") AnnotationAssertion(Annotation( "ABA:CTX1") "cerebral cortex, layer 1") -AnnotationAssertion(Annotation( "FMA:83900") Annotation( "FMA:TA") Annotation( ) "lamina molecularis isocorticis [lamina I]") +AnnotationAssertion(Annotation( "FMA:83900") Annotation( "FMA:TA") Annotation( ) "lamina molecularis isocorticis [lamina I]") AnnotationAssertion(Annotation( "NLXANAT:090807") "layer 1 of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090807") "layer I of neocortex") AnnotationAssertion(Annotation( "ncithesaurus:Molecular_layer") "molecular layer of cerebral cortex") @@ -192610,7 +192271,7 @@ AnnotationAssertion(Annotation( "FMA:77804") "external granular layer of isocortex [layer II]") AnnotationAssertion(Annotation( "FMA:77804") "external granular layer of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090808") "external granule cell layer of neocortex") -AnnotationAssertion(Annotation( "FMA:77804") Annotation( "FMA:TA") Annotation( ) "lamina granularis externa isocorticis [lamina ii]") +AnnotationAssertion(Annotation( "FMA:77804") Annotation( "FMA:TA") Annotation( ) "lamina granularis externa isocorticis [lamina ii]") AnnotationAssertion(Annotation( "NLXANAT:090808") "layer II of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090808") "neocortex layer 2") AnnotationAssertion(Annotation( "NLXANAT:090808") "neocortex layer II") @@ -192644,7 +192305,7 @@ AnnotationAssertion(Annotation( "NLXANAT:090809") "external pyramidal cell layer of neocortex") AnnotationAssertion(Annotation( "FMA:77810") "external pyramidal layer of isocortex [layer iii]") AnnotationAssertion(Annotation( "FMA:77810") "external pyramidal layer of neocortex") -AnnotationAssertion(Annotation( "FMA:77810") Annotation( "FMA:TA") Annotation( ) "lamina pyramidalis externa isocorticis [lamina iii]") +AnnotationAssertion(Annotation( "FMA:77810") Annotation( "FMA:TA") Annotation( ) "lamina pyramidalis externa isocorticis [lamina iii]") AnnotationAssertion(Annotation( "NLXANAT:090809") "layer 3 of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090809") "layer III of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090809") "neocortex external pyramidal cell layer") @@ -192653,7 +192314,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "ncithesaurus:External_Pyramidal_Cell_Layer") "external pyramidal layer of cerebral cortex") AnnotationAssertion(Annotation( "NeuroNames:2448") "isocortex, deep supragranular pyramidal layer") -AnnotationAssertion(Annotation( "NeuroNames:2448") Annotation( ) "lamina pyramidalis externa") +AnnotationAssertion(Annotation( "NeuroNames:2448") Annotation( ) "lamina pyramidalis externa") AnnotationAssertion(Annotation( "NeuroNames:2448") "layer of medium-sized and large pyramidal cells") AnnotationAssertion( "pyramidal layer") AnnotationAssertion( "UBERON:0005392") @@ -192681,7 +192342,7 @@ AnnotationAssertion(Annotation( "FMA:77811") "internal granular layer of isocortex [layer iv]") AnnotationAssertion(Annotation( "FMA:77811") "internal granular layer of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090810") "internal granule cell layer of neocortex") -AnnotationAssertion(Annotation( "FMA:77811") Annotation( "FMA:TA") Annotation( ) "lamina granularis interna isocorticis [lamina iv]") +AnnotationAssertion(Annotation( "FMA:77811") Annotation( "FMA:TA") Annotation( ) "lamina granularis interna isocorticis [lamina iv]") AnnotationAssertion(Annotation( "NLXANAT:090810") "layer 4 of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090810") "layer IV of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090810") "neocortex internal granule cell layer") @@ -192714,7 +192375,7 @@ AnnotationAssertion(Annotation( "NLXANAT:090811") "internal pyramidal cell layer of neocortex") AnnotationAssertion(Annotation( "FMA:77812") "internal pyramidal layer of isocortex [layer v]") AnnotationAssertion(Annotation( "FMA:77812") "internal pyramidal layer of neocortex") -AnnotationAssertion(Annotation( "FMA:77812") Annotation( "FMA:TA") Annotation( ) "lamina pyramidalis interna isocorticis [lamina v]") +AnnotationAssertion(Annotation( "FMA:77812") Annotation( "FMA:TA") Annotation( ) "lamina pyramidalis interna isocorticis [lamina v]") AnnotationAssertion(Annotation( "NLXANAT:090811") "layer 5 of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090811") "layer V of neocortex") AnnotationAssertion(Annotation( "NLXANAT:090811") "neocortex internal pyramidal cell layer") @@ -192729,8 +192390,8 @@ AnnotationAssertion( "NeuroNames:2450") "inner layer of large pyramidal cells") AnnotationAssertion(Annotation( "NeuroNames:2450") "internal pyramidal layer") AnnotationAssertion(Annotation( "NeuroNames:2450") "isocortex, infragranular pyramidal layer") -AnnotationAssertion(Annotation( "NeuroNames:2450") Annotation( ) "lamina ganglionaris") -AnnotationAssertion(Annotation( "NeuroNames:2450") Annotation( ) "lamina pyramidalis interna") +AnnotationAssertion(Annotation( "NeuroNames:2450") Annotation( ) "lamina ganglionaris") +AnnotationAssertion(Annotation( "NeuroNames:2450") Annotation( ) "lamina pyramidalis interna") AnnotationAssertion( "UBERON:0005394") AnnotationAssertion(rdfs:label "cortical layer V") SubClassOf( ) @@ -192749,7 +192410,7 @@ AnnotationAssertion( "PBA:294021896") AnnotationAssertion( "neuronames:2451") AnnotationAssertion(Annotation( "ABA:CTX6") "cerebral cortex, layer 6") -AnnotationAssertion(Annotation( "FMA:77805") Annotation( "FMA:TA") Annotation( ) "lamina multiformis isocorticis [lamina vi]") +AnnotationAssertion(Annotation( "FMA:77805") Annotation( "FMA:TA") Annotation( ) "lamina multiformis isocorticis [lamina vi]") AnnotationAssertion(Annotation( "NLXANAT:090812") "layer VI of neocortex") AnnotationAssertion(Annotation( "FMA:77805") "multiform layer of isocortex [layer vi]") AnnotationAssertion(Annotation( "FMA:77805") Annotation( "NLXANAT:090812") "multiform layer of neocortex") @@ -192762,7 +192423,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "NeuroNames:2451") "fusiform layer") AnnotationAssertion(Annotation( "NeuroNames:2451") "isocortex, polymorph layer") -AnnotationAssertion(Annotation( "NeuroNames:2451") Annotation( ) "lamina multiformis") +AnnotationAssertion(Annotation( "NeuroNames:2451") Annotation( ) "lamina multiformis") AnnotationAssertion(Annotation( "NeuroNames:2451") "multiform layer") AnnotationAssertion(Annotation( "NeuroNames:2451") "spindle cell layer") AnnotationAssertion( "UBERON:0005395") @@ -192820,8 +192481,8 @@ AnnotationAssertion( "NCIT:C49331") AnnotationAssertion( "UMLS:C1707346") AnnotationAssertion( "VHOG:0000230") -AnnotationAssertion(Annotation( "FMA:83981") Annotation( "FMA:TA") Annotation( ) "arachnoidea mater cranialis") -AnnotationAssertion(Annotation( "FMA:83981") Annotation( "FMA:TA") Annotation( ) "arachnoidea mater encephali") +AnnotationAssertion(Annotation( "FMA:83981") Annotation( "FMA:TA") Annotation( ) "arachnoidea mater cranialis") +AnnotationAssertion(Annotation( "FMA:83981") Annotation( "FMA:TA") Annotation( ) "arachnoidea mater encephali") AnnotationAssertion(Annotation( "MA:0000814") "brain arachnoid matter") AnnotationAssertion(Annotation( "FMA:83981") "cranial arachnoid mater") AnnotationAssertion( "uberon") @@ -192899,7 +192560,7 @@ AnnotationAssertion( "FMA:77614") AnnotationAssertion( "MA:0002972") AnnotationAssertion( "MBA:493") -AnnotationAssertion( "MESH:D066328") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066328") AnnotationAssertion( "NLX:57107") AnnotationAssertion( "PBA:10091") AnnotationAssertion( "Wikipedia:Ventral_striatum") @@ -192928,7 +192589,7 @@ AnnotationAssertion( "FMA:20502") "perirenal fascia") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0002975") "adipose capsule of kidney") -AnnotationAssertion(Annotation( "Wikipedia:Adipose_capsule_of_kidney") Annotation( ) "capsula adiposa renis") +AnnotationAssertion(Annotation( "Wikipedia:Adipose_capsule_of_kidney") Annotation( ) "capsula adiposa renis") AnnotationAssertion(Annotation( "MA:0002975") "fatty capsule of kidney") AnnotationAssertion(Annotation( "MA:0002975") "perinephric fat") AnnotationAssertion(Annotation( "MA:0002975") "periphrenic fascia") @@ -192946,11 +192607,11 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "MP:0013562") "Any of any of the secretory or sensory organs located in the brain region around or in relation to the ventricular system that are characterized by extensive vasculature and a lack of a normal blood brain barrier (BBB) and allow for the linkage between the central nervous system and peripheral blood flow.") AnnotationAssertion( "All vertebrates possess at least 4 circumventricular organs (including the hypothalamus) which can monitor the contents of the cerebrospinal fluid and secrete additional substances into it. (Butler, 1996, p. 330)") AnnotationAssertion( "CVOs contain neural tissue and are an integral part of neuroendocrine function; all of the CVOs, besides the subcommissural organ, contain extensive vasculature and fenestrated capillaries which leads to a leaky BBB at the site of the organs; the lack of a BBB allows CVOs to act as an alternative route for peptides and hormones in the neural tissue to the peripheral blood stream, while still protecting it from toxic substances") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006267") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006267") AnnotationAssertion( "EMAPA:35243") AnnotationAssertion( "FMA:84081") AnnotationAssertion( "MA:0002942") -AnnotationAssertion( "MESH:D066280") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066280") AnnotationAssertion( "NLXANAT:20090312") AnnotationAssertion( "Wikipedia:Circumventricular_organs") AnnotationAssertion( "neuronames:1242") @@ -193198,7 +192859,7 @@ AnnotationAssertion( "AEO:0000125") AnnotationAssertion( "CALOHA:TS-2122") AnnotationAssertion( "EHDAA2:0003125") -AnnotationAssertion( "FBbt:00007006") +AnnotationAssertion(Annotation( ) "FBbt:00007006") AnnotationAssertion( "FMA:292313") AnnotationAssertion( "MIAA:0000019") AnnotationAssertion( "uberon") @@ -193332,7 +192993,7 @@ AnnotationAssertion( "FMA:71008") AnnotationAssertion( "RETIRED_EHDAA2:0000133") AnnotationAssertion( "SCTID:361527005") -AnnotationAssertion(Annotation( ) "saccus aorticus") +AnnotationAssertion(Annotation( ) "saccus aorticus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005432") AnnotationAssertion( ) @@ -193371,7 +193032,7 @@ AnnotationAssertion( "Wikipedia:Common_hepatic_artery") AnnotationAssertion( "galen:CommonHepaticArtery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Common_hepatic_artery") Annotation( ) "arteria hepatica communis") +AnnotationAssertion(Annotation( "Wikipedia:Common_hepatic_artery") Annotation( ) "arteria hepatica communis") AnnotationAssertion(Annotation( "Wikipedia:Common_hepatic_artery") "common hepatic") AnnotationAssertion( "UBERON:0005436") AnnotationAssertion( ) @@ -193389,7 +193050,7 @@ AnnotationAssertion(Annotation( "FMA:24993") AnnotationAssertion( "SCTID:362887000") AnnotationAssertion(Annotation( "FMA:24993") "foot subdivision") -AnnotationAssertion(Annotation( "FMA:24993") Annotation( "FMA:TA") Annotation( ) "regio pedis") +AnnotationAssertion(Annotation( "FMA:24993") Annotation( "FMA:TA") Annotation( ) "regio pedis") AnnotationAssertion(Annotation( "FMA:24993") "segment of foot") AnnotationAssertion(Annotation( "FMA:24993") "subdivision of foot") AnnotationAssertion( "uberon") @@ -193414,7 +193075,7 @@ AnnotationAssertion( "Wikipedia:Foramen_rotundum") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Foramen_rotundum") "foramen rotundum of the skull") -AnnotationAssertion(Annotation( "Wikipedia:Foramen_rotundum") Annotation( ) "foramen rotundum ossis sphenoidalis") +AnnotationAssertion(Annotation( "Wikipedia:Foramen_rotundum") Annotation( ) "foramen rotundum ossis sphenoidalis") AnnotationAssertion(Annotation( "VHOG:0001543") "round foramen") AnnotationAssertion( "UBERON:0005446") AnnotationAssertion(rdfs:label "foramen rotundum") @@ -193428,7 +193089,7 @@ AnnotationAssertion(Annotation( "FMA:24945") AnnotationAssertion( "SCTID:127950000") AnnotationAssertion(Annotation( "FMA:24945") "hand subdivision") -AnnotationAssertion(Annotation( ) "regio manus") +AnnotationAssertion(Annotation( ) "regio manus") AnnotationAssertion(Annotation( "FMA:24945") "segment of hand") AnnotationAssertion(Annotation( "FMA:24945") "subdivision of hand") AnnotationAssertion( "uberon") @@ -193448,7 +193109,7 @@ AnnotationAssertion( "EHDAA:10631") AnnotationAssertion( "EMAPA:18713") AnnotationAssertion( "FMA:56432") -AnnotationAssertion( "MESH:D000080869") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000080869") AnnotationAssertion( "NCIT:C12496") AnnotationAssertion( "SCTID:361735006") AnnotationAssertion(Annotation( "ncithesaurus:Jugular_Foramen") "UMLS:C0222712") @@ -193539,7 +193200,7 @@ AnnotationAssertion( "Wikipedia:Levator_scapulae_muscle") "levator scapula") AnnotationAssertion(Annotation( "Wikipedia:Levator_scapulae_muscle") "levator scapulae muscle") AnnotationAssertion(Annotation( "Wikipedia:Levator_scapulae_muscle") "levator scapulæ") -AnnotationAssertion(Annotation( "Wikipedia:Levator_scapulae_muscle") Annotation( ) "musculus levator scapulae") +AnnotationAssertion(Annotation( "Wikipedia:Levator_scapulae_muscle") Annotation( ) "musculus levator scapulae") AnnotationAssertion( "UBERON:0005461") AnnotationAssertion( ) AnnotationAssertion( ) @@ -193717,7 +193378,7 @@ AnnotationAssertion(Annotation( "EHDAA:6491") "venous dural") AnnotationAssertion(Annotation( "EHDAA2:0002169") "venous dural sinus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Dural_venous_sinuses") Annotation( ) "s. durae matris") +AnnotationAssertion(Annotation( "Wikipedia:Dural_venous_sinuses") Annotation( ) "s. durae matris") AnnotationAssertion( "UBERON:0005486") AnnotationAssertion(rdfs:label "venous dural sinus") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif"^^xsd:anyURI) @@ -193744,7 +193405,7 @@ AnnotationAssertion( "XAO:0004147") AnnotationAssertion(Annotation( "VHOG:0000401") "embryonic vitelline vein") AnnotationAssertion(Annotation( "XAO:0004147") "vascular vitelline network") -AnnotationAssertion(Annotation( "Wikipedia:Vitelline_veins") Annotation( ) "vena vitellina") +AnnotationAssertion(Annotation( "Wikipedia:Vitelline_veins") Annotation( ) "vena vitellina") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:16244") "omphalomesenteric vein") AnnotationAssertion( "vein of omphalomesenteric system") @@ -193819,7 +193480,7 @@ SubClassOf(Annotation( "htt # Class: (primitive heart tube) AnnotationAssertion(Annotation( "ZFA:0000149") "Multi-tissue structure that arises from the heart rudiment and will become the heart tube.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006179") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006179") AnnotationAssertion( "EHDAA2:0001512") AnnotationAssertion( "EHDAA:424") AnnotationAssertion( "EHDAA:436") @@ -194289,7 +193950,7 @@ AnnotationAssertion( "EMAPA:35904") AnnotationAssertion( "FMA:5900") AnnotationAssertion( "XAO:0004143") -AnnotationAssertion(Annotation( ) "plexus vasculosus") +AnnotationAssertion(Annotation( ) "plexus vasculosus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005629") AnnotationAssertion(rdfs:label "vascular plexus") @@ -194304,7 +193965,7 @@ AnnotationAssertion( "EHDAA2") "EHDAA2 is a mereological sum.") AnnotationAssertion( "EHDAA2:0004714") AnnotationAssertion( "FMA:305915") -AnnotationAssertion( "MESH:D005321") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D005321") AnnotationAssertion( "SCTID:362840007") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005631") @@ -194733,7 +194394,6 @@ EquivalentClasses( ObjectIntersec # Class: (extraembryonic mesoderm) -AnnotationAssertion(Annotation( "http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm") ".") AnnotationAssertion( "EHDAA2:0000474") AnnotationAssertion( "EMAPA:31862") AnnotationAssertion( "EMAPA:31863") @@ -194814,8 +194474,8 @@ AnnotationAssertion(Annotation( "Wikipedia:Tunica_externa_(vessels)") "tunica adventitia of vessel") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Tunica_externa_(vessels)") "external coat") -AnnotationAssertion(Annotation( "Wikipedia:Tunica_externa_(vessels)") Annotation( ) "tunica adventitia vasorum") -AnnotationAssertion(Annotation( "Wikipedia:Tunica_externa_(vessels)") Annotation( ) "tunica externa vasorum") +AnnotationAssertion(Annotation( "Wikipedia:Tunica_externa_(vessels)") Annotation( ) "tunica adventitia vasorum") +AnnotationAssertion(Annotation( "Wikipedia:Tunica_externa_(vessels)") Annotation( ) "tunica externa vasorum") AnnotationAssertion( "UBERON:0005734") AnnotationAssertion(rdfs:label "tunica adventitia of blood vessel") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg"^^xsd:anyURI) @@ -194846,7 +194506,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "BTO:0002010") AnnotationAssertion( "FMA:45635") -AnnotationAssertion( "MESH:D063194") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D063194") AnnotationAssertion( "SCTID:30180000") AnnotationAssertion( "Wikipedia:Adventitia") AnnotationAssertion(Annotation( "Wikipedia:Adventitia") "tunica advetitia") @@ -194899,8 +194559,8 @@ AnnotationAssertion(Annotation( "ZFA:0005428") Annotation( "ZFIN:ZDB-PUB-961014-192") "optic nerve (II) foramen") AnnotationAssertion(Annotation( "TAO:0002025") "optic nerve foramen") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Optic_canal") Annotation( ) "canalis opticus") -AnnotationAssertion(Annotation( "Wikipedia:Optic_canal") Annotation( ) "foramen opticum ossis sphenoidalis") +AnnotationAssertion(Annotation( "Wikipedia:Optic_canal") Annotation( ) "canalis opticus") +AnnotationAssertion(Annotation( "Wikipedia:Optic_canal") Annotation( ) "foramen opticum ossis sphenoidalis") AnnotationAssertion( "UBERON:0005745") AnnotationAssertion( ) AnnotationAssertion( ) @@ -195041,7 +194701,7 @@ AnnotationAssertion( "ncithesaurus:Urorectal_Septum") "UMLS:C1519838") AnnotationAssertion( "VHOG:0000018") AnnotationAssertion( "Wikipedia:Urorectal_septum") -AnnotationAssertion(Annotation( "Wikipedia:Urorectal_septum") Annotation( ) "septum urorectale") +AnnotationAssertion(Annotation( "Wikipedia:Urorectal_septum") Annotation( ) "septum urorectale") AnnotationAssertion(Annotation( "MP:anna") "urorectal fold") AnnotationAssertion(Annotation( "MP:anna") "urorectal membrane") AnnotationAssertion( "uberon") @@ -195081,7 +194741,7 @@ AnnotationAssertion( "ncithesaurus:Basement_Membrane") "UMLS:C0004799") AnnotationAssertion( "Wikipedia:Basement_membrane") AnnotationAssertion(Annotation( "FMA:63872") "basement membrane of connective tissue") -AnnotationAssertion(Annotation( "Wikipedia:Basement_membrane") Annotation( ) "membrana basalis") +AnnotationAssertion(Annotation( "Wikipedia:Basement_membrane") Annotation( ) "membrana basalis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:63872") "basement membrane") AnnotationAssertion( "UBERON:0005769") @@ -195102,7 +194762,7 @@ AnnotationAssertion( "EMAPA:30965") AnnotationAssertion( "FMA:74274") AnnotationAssertion( "MA:0001659") -AnnotationAssertion( "MESH:D050533") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D050533") AnnotationAssertion( "NCIT:C32683") AnnotationAssertion( "SCTID:243897006") AnnotationAssertion( "TAO:0005285") @@ -195236,9 +194896,9 @@ AnnotationAssertion( "XAO:0000051") AnnotationAssertion( "ZFA:0000014") AnnotationAssertion(Annotation( "ZFA:0000014") "DA") -AnnotationAssertion(Annotation( "XAO:0000051") Annotation( ) "aorta dorsalis") +AnnotationAssertion(Annotation( "XAO:0000051") Annotation( ) "aorta dorsalis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Dorsal_aorta") Annotation( ) "aortae dorsales") +AnnotationAssertion(Annotation( "Wikipedia:Dorsal_aorta") Annotation( ) "aortae dorsales") AnnotationAssertion(Annotation( "VHOG:0000264") "dorsal aorta root") AnnotationAssertion(Annotation( "Wikipedia:Dorsal_aorta") Annotation( ) "dorsal aortae") AnnotationAssertion(Annotation( "VHOG:0000264") "dorsal aortic root") @@ -195362,10 +195022,10 @@ AnnotationAssertion( "neuronames:1656") AnnotationAssertion(Annotation( "FMA:256635") "coccygeal segment of spinal cord") AnnotationAssertion(Annotation( "FMA:256635") "coccygeal segments of spinal cord [1-3]") -AnnotationAssertion(Annotation( "FMA:256635") Annotation( "FMA:TA") Annotation( ) "pars coccygea medullae spinalis") -AnnotationAssertion(Annotation( "FMA:256635") Annotation( "FMA:TA") Annotation( ) "segmenta coccygea medullae spinalis [1-3]") +AnnotationAssertion(Annotation( "FMA:256635") Annotation( "FMA:TA") Annotation( ) "pars coccygea medullae spinalis") +AnnotationAssertion(Annotation( "FMA:256635") Annotation( "FMA:TA") Annotation( ) "segmenta coccygea medullae spinalis [1-3]") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:1656") Annotation( ) "segmenta coccygea") +AnnotationAssertion(Annotation( "NeuroNames:1656") Annotation( ) "segmenta coccygea") AnnotationAssertion( "UBERON:0005845") AnnotationAssertion(rdfs:comment "for spinal cord segments, we treat coccygeal/caudal as synonyms - we only differentiate where bone is concerned") AnnotationAssertion(rdfs:label "caudal segment of spinal cord") @@ -195451,7 +195111,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Mandibular_prominence") "mandibular process") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "mandibular swelling") -AnnotationAssertion(Annotation( "Wikipedia:Mandibular_prominence") Annotation( ) "prominentia mandibularis") +AnnotationAssertion(Annotation( "Wikipedia:Mandibular_prominence") Annotation( ) "prominentia mandibularis") AnnotationAssertion( "UBERON:0005867") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mandibular prominence") @@ -195474,7 +195134,7 @@ AnnotationAssertion( "EHDAA2:0001070") "maxillary process") AnnotationAssertion( "maxillary process of embryo") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Maxillary_prominence") Annotation( ) "prominentia maxilaris") +AnnotationAssertion(Annotation( "Wikipedia:Maxillary_prominence") Annotation( ) "prominentia maxilaris") AnnotationAssertion( "UBERON:0005868") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "maxillary prominence") @@ -195617,8 +195277,8 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "EMAPA:17382") "genital tubercle") AnnotationAssertion( "phallic tubercle") -AnnotationAssertion(Annotation( "Wikipedia:Genital_tubercle") Annotation( ) "tuberculum genitale") -AnnotationAssertion(Annotation( "Wikipedia:Genital_tubercle") Annotation( ) "tuberculum phallicum") +AnnotationAssertion(Annotation( "Wikipedia:Genital_tubercle") Annotation( ) "tuberculum genitale") +AnnotationAssertion(Annotation( "Wikipedia:Genital_tubercle") Annotation( ) "tuberculum phallicum") AnnotationAssertion( "UBERON:0005876") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "undifferentiated genital tubercle") @@ -195649,7 +195309,7 @@ AnnotationAssertion(Annotation( "AAO:0010623") Annotation( "Wikipedia:Pharyngeal_groove") "branchial groove") AnnotationAssertion( "pharyngeal ectodermal cleft") AnnotationAssertion(Annotation( ) "pharyngeal slit") -AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_groove") Annotation( ) "sulcus pharyngei") +AnnotationAssertion(Annotation( "Wikipedia:Pharyngeal_groove") Annotation( ) "sulcus pharyngei") AnnotationAssertion( "UBERON:0005879") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pharyngeal cleft") @@ -195682,8 +195342,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Alar_lamina") "alar lamina") AnnotationAssertion( "dorsal part of neural tube") -AnnotationAssertion(Annotation( "Wikipedia:Alar_plate") Annotation( ) "lamina alaris") -AnnotationAssertion(Annotation( "Wikipedia:Alar_plate") Annotation( ) "lamina dorsolateralis") +AnnotationAssertion(Annotation( "Wikipedia:Alar_plate") Annotation( ) "lamina alaris") +AnnotationAssertion(Annotation( "Wikipedia:Alar_plate") Annotation( ) "lamina dorsolateralis") AnnotationAssertion( "sensory part of neural tube") AnnotationAssertion( "UBERON:0005882") AnnotationAssertion(rdfs:label "neural tube alar plate") @@ -195802,6 +195462,7 @@ AnnotationAssertion(Annotation( "AAO:0010199") AnnotationAssertion( "BTO:0004675") AnnotationAssertion( "FMA:49187") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D009778") AnnotationAssertion( "SCTID:362618001") AnnotationAssertion( "TAO:0001414") AnnotationAssertion( "XAO:0003173") @@ -195825,11 +195486,11 @@ AnnotationAssertion( "SCTID:279675008") AnnotationAssertion( "Wikipedia:Excretory_duct_of_seminal_gland") AnnotationAssertion(Annotation( "FMA:19473") "ductus excretorius (vesicula seminalis)") -AnnotationAssertion(Annotation( "FMA:19473") Annotation( "FMA:TA") Annotation( ) "ductus excretorius glandulae vesiculosae") +AnnotationAssertion(Annotation( "FMA:19473") Annotation( "FMA:TA") Annotation( ) "ductus excretorius glandulae vesiculosae") AnnotationAssertion(Annotation( "FMA:19473") "excretory duct of seminal gland") AnnotationAssertion(Annotation( "FMA:19473") "seminal vesicle duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Excretory_duct_of_seminal_gland") Annotation( ) "ductus excretorius glandulae vesiculosae") +AnnotationAssertion(Annotation( "Wikipedia:Excretory_duct_of_seminal_gland") Annotation( ) "ductus excretorius glandulae vesiculosae") AnnotationAssertion( "UBERON:0005903") AnnotationAssertion(rdfs:label "duct of seminal vesicle") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1160.png"^^xsd:anyURI) @@ -195960,13 +195621,13 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (hair root sheath) -AnnotationAssertion(Annotation( "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56") ".") AnnotationAssertion( "EMAPA:18772") AnnotationAssertion( "FMA:294628") AnnotationAssertion( "MA:0000162") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005933") AnnotationAssertion(rdfs:label "hair root sheath") +AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56"^^xsd:anyURI) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -196028,7 +195689,7 @@ AnnotationAssertion( "Wikipedia:Axial_skeleton") AnnotationAssertion( "XAO:0004011") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Axial_skeleton") Annotation( ) "skeleton axiale") +AnnotationAssertion(Annotation( "Wikipedia:Axial_skeleton") Annotation( ) "skeleton axiale") AnnotationAssertion( "UBERON:0005944") AnnotationAssertion( ) AnnotationAssertion( ) @@ -196111,7 +195772,7 @@ AnnotationAssertion(Annotation( "FMA:9473") "left ventricular outflow") AnnotationAssertion(Annotation( "HP:0011103") "left ventricular outflow tract") AnnotationAssertion(Annotation( "FMA:9473") "outflow tract of left ventricle") -AnnotationAssertion(Annotation( "FMA:9473") Annotation( "FMA:TA") Annotation( ) "vestibulum aortae") +AnnotationAssertion(Annotation( "FMA:9473") Annotation( "FMA:TA") Annotation( ) "vestibulum aortae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0005956") AnnotationAssertion( ) @@ -196170,7 +195831,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Trabecular_meshwork") "ligamentum pectinatum iridis") AnnotationAssertion(Annotation( "BTO:0001605") "pectinate ligament") AnnotationAssertion(Annotation( "BTO:0001605") "pectinate ligament of iris") -AnnotationAssertion(Annotation( "Wikipedia:Trabecular_meshwork") Annotation( ) "reticulum trabeculare sclerae") +AnnotationAssertion(Annotation( "Wikipedia:Trabecular_meshwork") Annotation( ) "reticulum trabeculare sclerae") AnnotationAssertion(Annotation( "Wikipedia:Trabecular_meshwork") "scleral trabeculae") AnnotationAssertion(Annotation( "Wikipedia:Trabecular_meshwork") "scleral trabecular") AnnotationAssertion(Annotation( "Wikipedia:Trabecular_meshwork") "scleral trabecule") @@ -196213,7 +195874,7 @@ AnnotationAssertion(Annotation( "FMA:9236") AnnotationAssertion( "SCTID:277693004") AnnotationAssertion( "Wikipedia:Crista_terminalis") -AnnotationAssertion(Annotation( "FMA:9236") Annotation( "FMA:TA") Annotation( ) "crista terminalis atrii dextri") +AnnotationAssertion(Annotation( "FMA:9236") Annotation( "FMA:TA") Annotation( ) "crista terminalis atrii dextri") AnnotationAssertion(Annotation( "FMA:9236") "crista terminalis cordis") AnnotationAssertion(Annotation( "FMA:9236") "crista terminalis of right atrium") AnnotationAssertion( "uberon") @@ -196257,7 +195918,7 @@ AnnotationAssertion( "galen:LeftBundleBranch") AnnotationAssertion(Annotation( ) "LBB") AnnotationAssertion(Annotation( "FMA:9487") "crus sinistrum (fasciculi atrioventricularis)") -AnnotationAssertion(Annotation( "FMA:9487") Annotation( "FMA:TA") Annotation( ) "crus sinistrum fasciculi atrioventricularis") +AnnotationAssertion(Annotation( "FMA:9487") Annotation( "FMA:TA") Annotation( ) "crus sinistrum fasciculi atrioventricularis") AnnotationAssertion( "left branch of atrioventricular bundle") AnnotationAssertion(Annotation( "MP:0010566") "left bundle branch") AnnotationAssertion(Annotation( "HP:0005172") "left bundle branch of bundle of His") @@ -196283,7 +195944,7 @@ AnnotationAssertion( "galen:RightBundleBranch") AnnotationAssertion(Annotation( ) "RBB") AnnotationAssertion(Annotation( "FMA:9486") "crus dextrum (fasciculi atrioventricularis)") -AnnotationAssertion(Annotation( "FMA:9486") Annotation( "FMA:TA") Annotation( ) "crus dextrum fasciculi atrioventricularis") +AnnotationAssertion(Annotation( "FMA:9486") Annotation( "FMA:TA") Annotation( ) "crus dextrum fasciculi atrioventricularis") AnnotationAssertion( "right branch of atrioventricular bundle") AnnotationAssertion(Annotation( "FMA:9486") Annotation( "MP:0010567") "right bundle") AnnotationAssertion(Annotation( "FMA:9486") "right bundle branch") @@ -196356,7 +196017,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Skin_appendage") AnnotationAssertion(Annotation( "GO:GO") "body hair or bristle") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Skin_appendage") Annotation( ) "adnexae cutis") +AnnotationAssertion(Annotation( "Wikipedia:Skin_appendage") Annotation( ) "adnexae cutis") AnnotationAssertion(Annotation( "Wikipedia:Skin_appendage") "skin adnexa") AnnotationAssertion( "skin adnexal structure") AnnotationAssertion(Annotation( "Wikipedia:Skin_appendage") "skin appendage") @@ -196396,7 +196057,7 @@ AnnotationAssertion( "FMA:9497") "anulus fibrosus of heart") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0003628") "Lower's ring") -AnnotationAssertion(Annotation( "Wikipedia:Fibrous_rings_of_heart") Annotation( ) "annulus fibrosus cordis") +AnnotationAssertion(Annotation( "Wikipedia:Fibrous_rings_of_heart") Annotation( ) "annulus fibrosus cordis") AnnotationAssertion(Annotation( "Wikipedia:Fibrous_rings_of_heart") "anulus fibrosus cordis") AnnotationAssertion(Annotation( "Wikipedia:Fibrous_rings_of_heart") "aortic annulus") AnnotationAssertion(Annotation( "BTO:0003628") "atrioventricular ring") @@ -196609,7 +196270,7 @@ AnnotationAssertion(Annotation( "VHOG:0001184") AnnotationAssertion( "Wikipedia:Fundus_of_the_urinary_bladder#Fundus") AnnotationAssertion(Annotation( "FMA:15908") "base of urinary bladder") -AnnotationAssertion(Annotation( "FMA:15908") Annotation( "FMA:TA") Annotation( ) "fundus vesicae") +AnnotationAssertion(Annotation( "FMA:15908") Annotation( "FMA:TA") Annotation( ) "fundus vesicae") AnnotationAssertion(Annotation( "MP:0011785") "urinary bladder base") AnnotationAssertion(Annotation( "FMA:15908") "urinary bladder fundus") AnnotationAssertion(Annotation( "MA:0001694") "urinary bladder fundus region") @@ -196634,6 +196295,7 @@ AnnotationAssertion( "BAMS:BNC") AnnotationAssertion( "BIRNLEX:1629") AnnotationAssertion( "EV:0100182") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001479") AnnotationAssertion(Annotation( "BIRNLEX:1629") "UMLS:C0004781") AnnotationAssertion(Annotation( "BIRNLEX:1629") "neuronames:224") AnnotationAssertion(Annotation( "BIRNLEX:1629") "basal nuclei") @@ -196641,8 +196303,8 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "BIRNLEX:1629") Annotation( ) "basal ganglia") AnnotationAssertion(Annotation( "NeuroNames:224") "basal ganglia (anatomic)") -AnnotationAssertion(Annotation( "NeuroNames:224") Annotation( ) "corpus striatum (Savel'ev)") -AnnotationAssertion(Annotation( "NeuroNames:224") Annotation( ) "ganglia basales") +AnnotationAssertion(Annotation( "NeuroNames:224") Annotation( ) "corpus striatum (Savel'ev)") +AnnotationAssertion(Annotation( "NeuroNames:224") Annotation( ) "ganglia basales") AnnotationAssertion( "UBERON:0006098") AnnotationAssertion(rdfs:label "basal nuclear complex") SubClassOf( ) @@ -196702,11 +196364,11 @@ AnnotationAssertion( "SCTID:88545005") AnnotationAssertion( "Wikipedia:Nervous_system_fiber") AnnotationAssertion(Annotation( "FMA:5914") "nerve fibre") -AnnotationAssertion(Annotation( "FMA:5914") Annotation( "FMA:TA") Annotation( ) "neurofibra") +AnnotationAssertion(Annotation( "FMA:5914") Annotation( "FMA:TA") Annotation( ) "neurofibra") AnnotationAssertion(Annotation( "FMA:5914") "neurofibrum") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:nfi") Annotation( ) "nerve fibers") -AnnotationAssertion(Annotation( "Wikipedia:Nerve_fiber") Annotation( ) "neurofibra") +AnnotationAssertion(Annotation( "Wikipedia:Nerve_fiber") Annotation( ) "neurofibra") AnnotationAssertion( "UBERON:0006134") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nerve fiber") @@ -196791,7 +196453,7 @@ SubClassOf(Annotation( # Class: (mesonephric glomerular capillary) -AnnotationAssertion(Annotation( "GO:0061249") ".") +AnnotationAssertion(Annotation( "GO:0061249") "Missing definition for term UBERON:0006183. Please replace it using linked reference.") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006183") AnnotationAssertion(rdfs:label "mesonephric glomerular capillary") @@ -196853,7 +196515,7 @@ AnnotationAssertion( "Wikipedia:Aorticopulmonary_septum") AnnotationAssertion(Annotation( "Wikipedia:Aorticopulmonary_septum") "aortico-pulmonary septum") AnnotationAssertion(Annotation( "Wikipedia:Aorticopulmonary_septum") "aorticopulmonary septum") -AnnotationAssertion(Annotation( "Wikipedia:Aorticopulmonary_septum") Annotation( ) "septum aorticopulmonale") +AnnotationAssertion(Annotation( "Wikipedia:Aorticopulmonary_septum") Annotation( ) "septum aorticopulmonale") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Aorticopulmonary_septum") "aortic septum") AnnotationAssertion(Annotation( "Wikipedia:Aorticopulmonary_septum") "spiral septum") @@ -197002,7 +196664,7 @@ AnnotationAssertion( "Wikipedia:Cloacal_membrane") AnnotationAssertion( "embryonic cloacal membrane") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Cloacal_membrane") Annotation( ) "membrana cloacalis") +AnnotationAssertion(Annotation( "Wikipedia:Cloacal_membrane") Annotation( ) "membrana cloacalis") AnnotationAssertion( "UBERON:0006217") AnnotationAssertion( ) AnnotationAssertion( ) @@ -197436,7 +197098,7 @@ AnnotationAssertion( "Wikipedia:Lacrimal_groove") AnnotationAssertion(Annotation( "EMAPA:16679") "naso-lacrimal groove") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_groove") Annotation( ) "s. lacrimalis maxillae") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_groove") Annotation( ) "s. lacrimalis maxillae") AnnotationAssertion( "UBERON:0006266") AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct[WP] See also: oblique facial cleft") @@ -197863,7 +197525,8 @@ SubClassOf(Annotation( # Class: (premacula segment of distal straight tubule) -AnnotationAssertion(Annotation( "PMID:14595018") Annotation( "https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376") ".") +AnnotationAssertion(Annotation( "PMID:14595018") "Missing definition for term UBERON:0006376. Please replace it using linked reference.") +AnnotationAssertion( "https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376"^^xsd:anyURI) AnnotationAssertion( "EMAPA:29671") AnnotationAssertion( "MA:0002628") AnnotationAssertion(Annotation( "MA:0002628") "distal straight tubule premacula segment") @@ -197928,7 +197591,7 @@ AnnotationAssertion(Annotation( "BTO:0003627") AnnotationAssertion( "EMAPA:32670") AnnotationAssertion( "FMA:76704") -AnnotationAssertion( "MESH:D000070616") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000070616") AnnotationAssertion(Annotation( "FMA:76704") "anulus fibrosus") AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "fibrocartilaginous ring") AnnotationAssertion( "uberon") @@ -198237,7 +197900,7 @@ AnnotationAssertion( "FMA:85266") "external orifice of female urethra") AnnotationAssertion(Annotation( "FMA:85266") "external urethral orifice (female)") AnnotationAssertion(Annotation( "FMA:85266") "female urethral meatus") -AnnotationAssertion(Annotation( "FMA:85266") Annotation( "FMA:TA") Annotation( ) "ostium urethrae externum (urethra feminina)") +AnnotationAssertion(Annotation( "FMA:85266") Annotation( "FMA:TA") Annotation( ) "ostium urethrae externum (urethra feminina)") AnnotationAssertion(Annotation( "EMAPA:36453") "urethral meatus of clitoral urethra") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:36453") "distal urethral opening of female") @@ -198340,12 +198003,12 @@ AnnotationAssertion( "SCTID:245445008") AnnotationAssertion(Annotation( "ncithesaurus:Pectinate_Line") "UMLS:C0821671") AnnotationAssertion( "Wikipedia:Pectinate_line") -AnnotationAssertion(Annotation( "FMA:75383") Annotation( "FMA:TA") Annotation( ) "linea pectinata canalis analis") +AnnotationAssertion(Annotation( "FMA:75383") Annotation( "FMA:TA") Annotation( ) "linea pectinata canalis analis") AnnotationAssertion(Annotation( "FMA:75383") "pectinate line of anal canal") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:19159") "Hilton's 'white line'") AnnotationAssertion(Annotation( "Wikipedia:Pectinate_line") "dentate line") -AnnotationAssertion(Annotation( "Wikipedia:Pectinate_line") Annotation( ) "linea anocutanea") +AnnotationAssertion(Annotation( "Wikipedia:Pectinate_line") Annotation( ) "linea anocutanea") AnnotationAssertion(Annotation( "Wikipedia:Pectinate_line") "recto-anal junction") AnnotationAssertion(Annotation( "EMAPA:19159") "site of anal membrane") AnnotationAssertion( "UBERON:0006574") @@ -198489,7 +198152,7 @@ AnnotationAssertion(Annotation( "MA:0001490") "symphysis menti") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Symphysis_menti") "mental symphysis") -AnnotationAssertion(Annotation( "Wikipedia:Symphysis_menti") Annotation( ) "symphysis mandibulae") +AnnotationAssertion(Annotation( "Wikipedia:Symphysis_menti") Annotation( ) "symphysis mandibulae") AnnotationAssertion( "UBERON:0006606") AnnotationAssertion( ) AnnotationAssertion( ) @@ -198508,7 +198171,7 @@ AnnotationAssertion(Annotation( "AEO:0000092") AnnotationAssertion( "EHDAA2:0003092") AnnotationAssertion( "FMA:9722") -AnnotationAssertion( "MESH:D000070606") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D000070606") AnnotationAssertion( "NCIT:C32133") AnnotationAssertion( "SCTID:331712004") AnnotationAssertion(Annotation( "ncithesaurus:Aponeurosis") "UMLS:C0225205") @@ -198598,7 +198261,7 @@ AnnotationAssertion(Annotation( "FMA:18318") "muscular layer of uterine tube") AnnotationAssertion(Annotation( "FMA:18318") "muscularis of uterine tube") AnnotationAssertion(Annotation( "FMA:18318") "tunica muscularis (Tuba uterina)") -AnnotationAssertion(Annotation( "FMA:18318") Annotation( "FMA:TA") Annotation( ) "tunica muscularis tubae uterinae") +AnnotationAssertion(Annotation( "FMA:18318") Annotation( "FMA:TA") Annotation( ) "tunica muscularis tubae uterinae") AnnotationAssertion(Annotation( "FMA:18318") "uterine tubal muscularis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006642") @@ -198637,7 +198300,7 @@ AnnotationAssertion(Annotation( "FMA:19238") "adventitia of vas deferens") AnnotationAssertion(Annotation( "FMA:19238") "deferent ductal adventitia") AnnotationAssertion(Annotation( "FMA:19238") "tunica adventitia (ductus deferens)") -AnnotationAssertion(Annotation( "FMA:19238") Annotation( "FMA:TA") Annotation( ) "tunica adventitia ductus deferentis") +AnnotationAssertion(Annotation( "FMA:19238") Annotation( "FMA:TA") Annotation( ) "tunica adventitia ductus deferentis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006647") AnnotationAssertion(rdfs:label "adventitia of ductus deferens") @@ -198652,7 +198315,7 @@ AnnotationAssertion( "FMA:19403") "adventitia of seminal gland") AnnotationAssertion(Annotation( "FMA:19403") "seminal vesicle adventitia") AnnotationAssertion(Annotation( "FMA:19403") "tunica adventitia (vesicula seminalis)") -AnnotationAssertion(Annotation( "FMA:19403") Annotation( "FMA:TA") Annotation( ) "tunica adventitia glandulae vesiculosae") +AnnotationAssertion(Annotation( "FMA:19403") Annotation( "FMA:TA") Annotation( ) "tunica adventitia glandulae vesiculosae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006648") AnnotationAssertion(rdfs:label "adventitia of seminal vesicle") @@ -198664,7 +198327,7 @@ AnnotationAssertion( "FMA:19976") AnnotationAssertion( "SCTID:253069005") AnnotationAssertion(Annotation( "FMA:19976") "muscular coat of vagina") -AnnotationAssertion(Annotation( "FMA:19976") Annotation( "FMA:TA") Annotation( ) "tunica muscularis vaginae") +AnnotationAssertion(Annotation( "FMA:19976") Annotation( "FMA:TA") Annotation( ) "tunica muscularis vaginae") AnnotationAssertion( "vaginal muscularis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006652") @@ -198704,17 +198367,18 @@ AnnotationAssertion(Annotation( "AAO:0000749") AnnotationAssertion( "EMAPA:25122") AnnotationAssertion( "FMA:23275") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D061165") AnnotationAssertion( "NCIT:C32682") AnnotationAssertion( "SCTID:181914008") AnnotationAssertion(Annotation( "ncithesaurus:Glenoid_Fossa") "UMLS:C1261046") AnnotationAssertion( "Wikipedia:Glenoid_cavity") -AnnotationAssertion(Annotation( "FMA:23275") Annotation( "FMA:TA") Annotation( ) "cavitas glenoidalis scapulae") +AnnotationAssertion(Annotation( "FMA:23275") Annotation( "FMA:TA") Annotation( ) "cavitas glenoidalis scapulae") AnnotationAssertion(Annotation( "FMA:23275") "cavitus glenoidalis") AnnotationAssertion(Annotation( "FMA:23275") "glenoid cavity") AnnotationAssertion(Annotation( "FMA:23275") "glenoid cavity of scapula") AnnotationAssertion( "glenoid facet") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Glenoid_cavity") Annotation( ) "cavitas glenoidalis") +AnnotationAssertion(Annotation( "Wikipedia:Glenoid_cavity") Annotation( ) "cavitas glenoidalis") AnnotationAssertion(Annotation( "AAO:0000749") "glenoid cavity") AnnotationAssertion( "UBERON:0006657") AnnotationAssertion( ) @@ -198757,7 +198421,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Muscular_layer") AnnotationAssertion(Annotation( "OBOL:automatic") "muscular layer") AnnotationAssertion(Annotation( "FMA:45634") "muscularis layer") -AnnotationAssertion(Annotation( "BTO:0004838") Annotation( ) "tunica muscularis") +AnnotationAssertion(Annotation( "BTO:0004838") Annotation( ) "tunica muscularis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Muscularis_externa") "muscular coat") AnnotationAssertion( "muscularis") @@ -198780,7 +198444,7 @@ AnnotationAssertion( "FMA:46768") AnnotationAssertion( "SCTID:368677009") AnnotationAssertion( "Wikipedia:Galea_aponeurotica") -AnnotationAssertion(Annotation( "FMA:46768") Annotation( "FMA:TA") Annotation( ) "aponeurosis epicranialis") +AnnotationAssertion(Annotation( "FMA:46768") Annotation( "FMA:TA") Annotation( ) "aponeurosis epicranialis") AnnotationAssertion(Annotation( "FMA:46768") "aponeurosis of epicranius") AnnotationAssertion(Annotation( "FMA:46768") "epicranial aponeurosis") AnnotationAssertion(Annotation( "FMA:46768") "epicranius aponeurosis") @@ -198789,7 +198453,7 @@ AnnotationAssertion( "Wikipedia:Galea_aponeurotica") "cranial aponeurosis") AnnotationAssertion(Annotation( "Wikipedia:Galea_aponeurotica") "epicranial aponeurosis") AnnotationAssertion(Annotation( "Wikipedia:Galea_aponeurotica") "galea aponeurosis") -AnnotationAssertion(Annotation( "Wikipedia:Galea_aponeurotica") Annotation( ) "galea aponeurotica; aponeurosis epicranialis") +AnnotationAssertion(Annotation( "Wikipedia:Galea_aponeurotica") Annotation( ) "galea aponeurotica; aponeurosis epicranialis") AnnotationAssertion(Annotation( "Wikipedia:Galea_aponeurotica") "galeal aponeurosis") AnnotationAssertion( "UBERON:0006661") AnnotationAssertion(rdfs:label "epicranial aponeurosis") @@ -198804,7 +198468,7 @@ AnnotationAssertion( "FMA:55805") AnnotationAssertion( "Wikipedia:Carotid_canal") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Carotid_canal") Annotation( ) "canalis caroticus") +AnnotationAssertion(Annotation( "Wikipedia:Carotid_canal") Annotation( ) "canalis caroticus") AnnotationAssertion( "UBERON:0006668") AnnotationAssertion(rdfs:label "carotid canal") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray141.png"^^xsd:anyURI) @@ -198824,7 +198488,7 @@ AnnotationAssertion( "Wikipedia:Central_tendon_of_diaphragm") AnnotationAssertion(Annotation( "FMA:58279") "central tendon") AnnotationAssertion(Annotation( "FMA:58279") "centrum tendineum") -AnnotationAssertion(Annotation( "FMA:58279") Annotation( "FMA:TA") Annotation( ) "centrum tendineum diaphragmatis") +AnnotationAssertion(Annotation( "FMA:58279") Annotation( "FMA:TA") Annotation( ) "centrum tendineum diaphragmatis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006670") AnnotationAssertion( ) @@ -198838,7 +198502,7 @@ SubClassOf(Annotation( "d AnnotationAssertion(Annotation( "OBOL:automatic") "A valve that is part of a vein.") AnnotationAssertion( "FMA:68095") -AnnotationAssertion( "MESH:D055422") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D055422") AnnotationAssertion(Annotation( "FMA:68095") "valve of vein") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006675") @@ -198864,7 +198528,7 @@ AnnotationAssertion( "Wikipedia:Hypoglossal_canal") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:19012") "anterior condylar canal") -AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_canal") Annotation( ) "canalis nervi hypoglossi") +AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_canal") Annotation( ) "canalis nervi hypoglossi") AnnotationAssertion(Annotation( "Wikipedia:Hypoglossal_canal") "hyperglossal canal") AnnotationAssertion( "UBERON:0006682") AnnotationAssertion(rdfs:label "hypoglossal canal") @@ -198880,7 +198544,7 @@ AnnotationAssertion( "MA:0002108") AnnotationAssertion( "SCTID:181376008") AnnotationAssertion( "Wikipedia:Spinal_veins") -AnnotationAssertion(Annotation( "FMA:76735") Annotation( "FMA:TA") Annotation( ) "vena spinalis") +AnnotationAssertion(Annotation( "FMA:76735") Annotation( "FMA:TA") Annotation( ) "vena spinalis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:76735") "spinal branch") AnnotationAssertion( "UBERON:0006686") @@ -198895,6 +198559,7 @@ AnnotationAssertion(Annotation( "AAO:0000693") AnnotationAssertion( "FMA:9680") AnnotationAssertion( "GAID:242") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D013115") AnnotationAssertion( "NCIT:C33869") AnnotationAssertion( "NCIT:C34221") AnnotationAssertion( "SCTID:361746009") @@ -198902,7 +198567,7 @@ AnnotationAssertion(Annotation( "ncithesaurus:Neural_Canal") "UMLS:C1522467") AnnotationAssertion( "Wikipedia:Spinal_canal") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Spinal_canal") Annotation( ) "c. vertebralis") +AnnotationAssertion(Annotation( "Wikipedia:Spinal_canal") Annotation( ) "c. vertebralis") AnnotationAssertion(Annotation( "AAO:0000693") "foramen vertebrale") AnnotationAssertion(Annotation( "AAO:0000693") "neural canal") AnnotationAssertion(Annotation( "AAO:0000693") "spinal canal") @@ -198973,7 +198638,7 @@ AnnotationAssertion( "ncithesaurus:Modiolus") "UMLS:C0229503") AnnotationAssertion( "Wikipedia:Modiolus_(cochlea)") AnnotationAssertion(Annotation( "FMA:61278") "cochlea modiolus") -AnnotationAssertion(Annotation( "FMA:61278") Annotation( "FMA:TA") Annotation( ) "modiolus cochleae") +AnnotationAssertion(Annotation( "FMA:61278") Annotation( "FMA:TA") Annotation( ) "modiolus cochleae") AnnotationAssertion(Annotation( "FMA:61278") "modiolus of cochlea") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0001693") "columella cochleae") @@ -198999,8 +198664,8 @@ AnnotationAssertion( "SCTID:279840005") AnnotationAssertion( "UMLS:C0229477") AnnotationAssertion( "Wikipedia:Spiral_ligament") -AnnotationAssertion(Annotation( "Wikipedia:Spiral_ligament") Annotation( ) "ligamentum spirale ductus cochlearis") -AnnotationAssertion(Annotation( ) "spiral cochlear ligament") +AnnotationAssertion(Annotation( "Wikipedia:Spiral_ligament") Annotation( ) "ligamentum spirale ductus cochlearis") +AnnotationAssertion(Annotation( ) "spiral cochlear ligament") AnnotationAssertion(Annotation( "BIRNLEX:2524") "spiral ligament of cochlea") AnnotationAssertion(Annotation( "FMA:77834") "spiral ligament of cochlear duct") AnnotationAssertion( "uberon") @@ -199050,7 +198715,7 @@ AnnotationAssertion( "lateral lingual prominence") AnnotationAssertion(Annotation( "Wikipedia:Lateral_lingual_swelling") "lateral swellings") AnnotationAssertion(Annotation( "Wikipedia:Lateral_lingual_swelling") "tuberculum laterale") -AnnotationAssertion(Annotation( "Wikipedia:Lateral_lingual_swelling") Annotation( ) "tuberculum linguale laterale") +AnnotationAssertion(Annotation( "Wikipedia:Lateral_lingual_swelling") Annotation( ) "tuberculum linguale laterale") AnnotationAssertion( "UBERON:0006757") AnnotationAssertion(rdfs:label "lateral lingual swelling") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png"^^xsd:anyURI) @@ -199075,11 +198740,11 @@ AnnotationAssertion( "FMA:58342") Annotation( "GAID:896") "corneal limbus") AnnotationAssertion(Annotation( "PMID:17051547") "corneal-scleral limbus") AnnotationAssertion(Annotation( "GAID:896") "corneoscleral junction") -AnnotationAssertion(Annotation( "Wikipedia:Corneal_limbus") Annotation( ) "limbus corneae") +AnnotationAssertion(Annotation( "Wikipedia:Corneal_limbus") Annotation( ) "limbus corneae") AnnotationAssertion(Annotation( "FMA:58342") "sclerocorneal junction") AnnotationAssertion(Annotation( "GAID:896") "sclerocorneal limbus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Corneal_limbus") Annotation( ) "limbus corneae") +AnnotationAssertion(Annotation( "Wikipedia:Corneal_limbus") Annotation( ) "limbus corneae") AnnotationAssertion( "UBERON:0006761") AnnotationAssertion( ) AnnotationAssertion( ) @@ -199173,7 +198838,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "OBOL:automatic") "An anatomical space that surrounded_by a open tracheal system trachea.") AnnotationAssertion(Annotation( "FBbt:00007410") Annotation( ) "tracheal lumen") -AnnotationAssertion( "FBbt:00007410") +AnnotationAssertion(Annotation( ) "FBbt:00007410") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006832") AnnotationAssertion(rdfs:label "lumen of open tracheal system trachea") @@ -199197,6 +198862,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A subdivision of a the reproductive tract in a female organism that is the site of embryo development.") AnnotationAssertion(Annotation( "FBbt:00004924") Annotation( ) "uterus") +AnnotationAssertion(Annotation( ) "FBbt:00004924") AnnotationAssertion( "TADS:0000421") AnnotationAssertion( "WBbt:0006760") AnnotationAssertion( "uberon") @@ -199335,7 +199001,7 @@ SubClassOf(Annotation( "MA" # Class: (distal straight tubule postmacula segment) -AnnotationAssertion(Annotation( "https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376") ".") +AnnotationAssertion( "https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376"^^xsd:anyURI) AnnotationAssertion( "EMAPA:28402") AnnotationAssertion( "MA:0002615") AnnotationAssertion(Annotation( "MA:th") "cortical thick ascending limb of Henle's loop") @@ -199359,8 +199025,8 @@ AnnotationAssertion( "FMA:15893") "muscular coat of ureter") AnnotationAssertion(Annotation( "FMA:15893") "muscular layer of ureter") AnnotationAssertion(Annotation( "FMA:15893") "muscularis of ureter") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis (ureter)") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis ureteris") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis (ureter)") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis ureteris") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:28567") "ureteral smooth muscle layer") AnnotationAssertion( "UBERON:0006855") @@ -199418,7 +199084,7 @@ AnnotationAssertion( "SCTID:182048009") AnnotationAssertion( "Wikipedia:Body_of_femur") AnnotationAssertion(Annotation( "FMA:32847") "body of femur") -AnnotationAssertion(Annotation( "FMA:32847") Annotation( "FMA:TA") Annotation( ) "corpus femoris") +AnnotationAssertion(Annotation( "FMA:32847") Annotation( "FMA:TA") Annotation( ) "corpus femoris") AnnotationAssertion(Annotation( "FMA:32847") "femoral diaphysis") AnnotationAssertion( "femoral shaft") AnnotationAssertion(Annotation( "FMA:32847") "shaft of femur") @@ -199458,7 +199124,7 @@ SubClassOf(Annotation( AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "The distalmost portion of the digestive tract, derived from the hindgut, and terminating with the anus.") AnnotationAssertion( "this class is the superclass of 'rectum', which is currently reserved for the vertebrate structure. May be merged in future.") -AnnotationAssertion( "FBbt:00005756") +AnnotationAssertion(Annotation( ) "FBbt:00005756") AnnotationAssertion( "WBbt:0005773") AnnotationAssertion(Annotation( "FBbt:00005756") "rectum") AnnotationAssertion( "uberon") @@ -199473,7 +199139,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (seminal fluid secreting gland) AnnotationAssertion(Annotation( "OBOL:automatic") "A gland that secretes a seminal fluid.") -AnnotationAssertion( "FBbt:00004958") +AnnotationAssertion(Annotation( ) "FBbt:00004958") AnnotationAssertion( "WBbt:0006870") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0006868") @@ -199950,7 +199616,7 @@ AnnotationAssertion( "FMA:19081") Annotation( "Wikipedia:Efferent_ducts") "efferent ductule") AnnotationAssertion( "seminal duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Efferent_ducts") Annotation( ) "ductuli efferentes testis") +AnnotationAssertion(Annotation( "Wikipedia:Efferent_ducts") Annotation( ) "ductuli efferentes testis") AnnotationAssertion(Annotation( "AAO:0010532") Annotation( "Wikipedia:Efferent_ducts") "vasa efferentia") AnnotationAssertion( "UBERON:0006946") AnnotationAssertion( ) @@ -200054,7 +199720,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Stroma_of_ovary") "stroma of the ovary") AnnotationAssertion(Annotation( "FMA:18626") "stroma ovarica") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Stroma_of_ovary") Annotation( ) "stroma ovarii") +AnnotationAssertion(Annotation( "Wikipedia:Stroma_of_ovary") Annotation( ) "stroma ovarii") AnnotationAssertion( "UBERON:0006960") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ovary stroma") @@ -200086,15 +199752,15 @@ AnnotationAssertion( "BIRNLEX:1022") "neuronames:410") AnnotationAssertion(Annotation( "BIRNLEX:1022") "distal part of hypophysis") AnnotationAssertion(Annotation( "FMA:74630") "pars anterior of adenohypophysis") -AnnotationAssertion(Annotation( "FMA:74630") Annotation( "FMA:TA") Annotation( ) "pars distalis (glandula pituitaria)") -AnnotationAssertion(Annotation( "FMA:74630") Annotation( "FMA:TA") Annotation( ) "pars distalis adenohypophysis") +AnnotationAssertion(Annotation( "FMA:74630") Annotation( "FMA:TA") Annotation( ) "pars distalis (glandula pituitaria)") +AnnotationAssertion(Annotation( "FMA:74630") Annotation( "FMA:TA") Annotation( ) "pars distalis adenohypophysis") AnnotationAssertion(Annotation( "FMA:74630") "pars distalis of anterior lobe of pituitary gland") AnnotationAssertion(Annotation( "FMA:74630") "pars glandularis of adenohypophysis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0000854") "anterior lobe") AnnotationAssertion(Annotation( "NeuroNames:410") "distal part of the hypophysis") AnnotationAssertion(Annotation( "MA:0000854") "pars distalis") -AnnotationAssertion(Annotation( "NeuroNames:410") Annotation( ) "pars distalis (hypophysis)") +AnnotationAssertion(Annotation( "NeuroNames:410") Annotation( ) "pars distalis (hypophysis)") AnnotationAssertion(Annotation( "BTO:0001787") "pars distalis adenohypophyseos") AnnotationAssertion(Annotation( "BTO:0001787") "pars distalis lobi anterioris hypophyseos") AnnotationAssertion(Annotation( "MA:0000854") "pars glandularis") @@ -200209,7 +199875,7 @@ AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0002046") Annotation( "TAO") Annotation( "TAO:wd") "Whole organism that is fully grown or sexually mature.[TAO]") AnnotationAssertion( "adult") AnnotationAssertion( "BILA:0000078") -AnnotationAssertion( "FBbt:00003004") +AnnotationAssertion(Annotation( ) "FBbt:00003004") AnnotationAssertion( "HAO:0000087") AnnotationAssertion( "NCIT:C17600") AnnotationAssertion( "TAO:0002046") @@ -200342,7 +200008,7 @@ AnnotationAssertion( "galen:NeckOfFemur") AnnotationAssertion(Annotation( "FMA:42385") "femoral neck") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Femur_neck") Annotation( ) "collum femoris") +AnnotationAssertion(Annotation( "Wikipedia:Femur_neck") Annotation( ) "collum femoris") AnnotationAssertion(Annotation( "Wikipedia:Femur_neck") "femur neck") AnnotationAssertion(Annotation( "Wikipedia:Femur_neck") "neck of the femur") AnnotationAssertion( "UBERON:0007119") @@ -200702,7 +200368,7 @@ AnnotationAssertion( "FMA:23239") "axillary border of scapula") AnnotationAssertion(Annotation( "FMA:23239") "lateral border of scapula") AnnotationAssertion(Annotation( "FMA:23239") "margo lateralis (scapula)") -AnnotationAssertion(Annotation( "FMA:23239") Annotation( "FMA:TA") Annotation( ) "margo lateralis scapulae") +AnnotationAssertion(Annotation( "FMA:23239") Annotation( "FMA:TA") Annotation( ) "margo lateralis scapulae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:23239") "lateral part of scapula") AnnotationAssertion( "UBERON:0007173") @@ -200721,7 +200387,7 @@ AnnotationAssertion( "SCTID:368187009") AnnotationAssertion( "Wikipedia:Medial_border_of_scapula") AnnotationAssertion(Annotation( "FMA:23242") "margo medialis (scapula)") -AnnotationAssertion(Annotation( "FMA:23242") Annotation( "FMA:TA") Annotation( ) "margo medialis scapulae") +AnnotationAssertion(Annotation( "FMA:23242") Annotation( "FMA:TA") Annotation( ) "margo medialis scapulae") AnnotationAssertion(Annotation( "FMA:23242") "medial part of scapula") AnnotationAssertion(Annotation( "FMA:23242") "vertebral border of scapula") AnnotationAssertion( "uberon") @@ -200743,7 +200409,7 @@ AnnotationAssertion( "FMA:13315") AnnotationAssertion( "Wikipedia:Inferior_angle_of_scapula") AnnotationAssertion(Annotation( "FMA:13315") "angulus inferior (scapula)") -AnnotationAssertion(Annotation( "Wikipedia:Inferior_angle_of_scapula") Annotation( ) "angulus inferior scapulae") +AnnotationAssertion(Annotation( "Wikipedia:Inferior_angle_of_scapula") Annotation( ) "angulus inferior scapulae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0007175") AnnotationAssertion( ) @@ -200834,7 +200500,7 @@ AnnotationAssertion( "NCIT:C117875") AnnotationAssertion( "SCTID:361384001") AnnotationAssertion( "Wikipedia:Tracheobronchial_tree") -AnnotationAssertion(Annotation( "FMA:7393") Annotation( "FMA:TA") Annotation( ) "arbor tracheobronchialis") +AnnotationAssertion(Annotation( "FMA:7393") Annotation( "FMA:TA") Annotation( ) "arbor tracheobronchialis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "HP:0005607") "tracheobronchial system") AnnotationAssertion( "UBERON:0007196") @@ -201133,6 +200799,7 @@ AnnotationAssertion(Annotation( "Hardisty, p. 320-1") ) AnnotationAssertion( "CALOHA:TS-0822") AnnotationAssertion( "EV:0100226") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D011301") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0007251") AnnotationAssertion(rdfs:label "preoptic nucleus") @@ -201545,7 +201212,7 @@ AnnotationAssertion( "EMAPA:32952") AnnotationAssertion( "FMA:10419") AnnotationAssertion( "MA:0000124") -AnnotationAssertion( "MESH:D010183") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D010183") AnnotationAssertion( "SCTID:181278006") AnnotationAssertion( "TAO:0001372") AnnotationAssertion( "VHOG:0000254") @@ -201554,7 +201221,7 @@ AnnotationAssertion( "OBOL:accepted") "duct of pancreas") AnnotationAssertion(Annotation( "OBOL:accepted") "pancreas duct") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pancreatic_duct") Annotation( ) "ductus pancreaticus") +AnnotationAssertion(Annotation( "Wikipedia:Pancreatic_duct") Annotation( ) "ductus pancreaticus") AnnotationAssertion( "UBERON:0007329") AnnotationAssertion( ) AnnotationAssertion( ) @@ -201623,7 +201290,7 @@ AnnotationAssertion(Annotation( "this grouping class exists primarily to align with GO - see GO:0008544.") AnnotationAssertion( "BSA:0000073") AnnotationAssertion( "BTO:0000313") -AnnotationAssertion( "FBbt:00004993") +AnnotationAssertion(Annotation( ) "FBbt:00004993") AnnotationAssertion( "HAO:0000298") AnnotationAssertion( "TADS:0000109") AnnotationAssertion( "WBbt:0005733") @@ -202083,7 +201750,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Stratum_lucidum_of_hippocampus") AnnotationAssertion( "neuronames:1777") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Stratum_lucidum_of_hippocampus") Annotation( ) "stratum lucidum hippocampi") +AnnotationAssertion(Annotation( "Wikipedia:Stratum_lucidum_of_hippocampus") Annotation( ) "stratum lucidum hippocampi") AnnotationAssertion(Annotation( "BAMS:SLu") "stratum lucidum hippocampus") AnnotationAssertion( "UBERON:0007637") AnnotationAssertion(rdfs:label "hippocampus stratum lucidum") @@ -202110,7 +201777,7 @@ AnnotationAssertion(Annotation( "FMA:83867") "neuraxis alveus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BAMS:alv") "CA2 alveus") -AnnotationAssertion(Annotation( "NeuroNames:186") Annotation( ) "alveus hippocampi") +AnnotationAssertion(Annotation( "NeuroNames:186") Annotation( ) "alveus hippocampi") AnnotationAssertion(Annotation( "BAMS:alv") "alveus of fornix") AnnotationAssertion(Annotation( "BAMS:alv") "alveus of the hippocampus") AnnotationAssertion( "UBERON:0007639") @@ -202129,12 +201796,13 @@ AnnotationAssertion( "DHBA:266441713") AnnotationAssertion( "FMA:71248") AnnotationAssertion( "HBA:9203") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D014278") AnnotationAssertion(Annotation( "BIRNLEX:4096") "UMLS:C0040999") AnnotationAssertion( "Wikipedia:Trigeminal_nerve_nuclei") AnnotationAssertion( "neuronames:2021") AnnotationAssertion(Annotation( "FMA:71248") "trigeminal nuclei") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_nerve_nuclei") Annotation( ) "nuclei trigemini") +AnnotationAssertion(Annotation( "Wikipedia:Trigeminal_nerve_nuclei") Annotation( ) "nuclei trigemini") AnnotationAssertion( "UBERON:0007641") AnnotationAssertion(rdfs:label "trigeminal nuclear complex") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png"^^xsd:anyURI) @@ -202271,7 +201939,7 @@ AnnotationAssertion( "AEO:0000170") AnnotationAssertion( "EFO:0001649") AnnotationAssertion( "EHDAA2:0003170") -AnnotationAssertion( "FBbt:00005426") +AnnotationAssertion(Annotation( ) "FBbt:00005426") AnnotationAssertion( "Wikipedia:Anlage_(biology)") AnnotationAssertion( "developmental field") AnnotationAssertion( "uberon") @@ -202289,8 +201957,8 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "MP:0004662") Annotation( "Wikipedia:Thyroid_diverticulum") "Endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP].") AnnotationAssertion( "Wikipedia:Thyroid_diverticulum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Thyroid_diverticulum") Annotation( ) "diverticulum thyroideum") -AnnotationAssertion(Annotation( "Wikipedia:Thyroid_diverticulum") Annotation( ) "saccus thyroideus") +AnnotationAssertion(Annotation( "Wikipedia:Thyroid_diverticulum") Annotation( ) "diverticulum thyroideum") +AnnotationAssertion(Annotation( "Wikipedia:Thyroid_diverticulum") Annotation( ) "saccus thyroideus") AnnotationAssertion( "UBERON:0007689") AnnotationAssertion(rdfs:label "thyroid diverticulum") SubClassOf( ) @@ -202299,7 +201967,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (early pharyngeal endoderm) -AnnotationAssertion(Annotation( "http://dev.biologists.org/content/128/22/4573.full") ".") AnnotationAssertion( "EFO:0003626") AnnotationAssertion( "EHDAA2:0001457") AnnotationAssertion( "EHDAA:962") @@ -202316,6 +201983,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'") AnnotationAssertion(rdfs:label "early pharyngeal endoderm") +AnnotationAssertion(rdfs:seeAlso "http://dev.biologists.org/content/128/22/4573.full"^^xsd:anyURI) SubClassOf(Annotation( "EHDAA2") ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "cjm") ObjectSomeValuesFrom( )) @@ -202754,7 +202422,7 @@ AnnotationAssertion( "https://orcid.org/0000-0002-6601-2165") "skeletal parts of pectoral girdle") AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "skeleton of pectoral girdle") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pectoral_girdle") Annotation( ) "cingulum pectorale") +AnnotationAssertion(Annotation( "Wikipedia:Pectoral_girdle") Annotation( ) "cingulum pectorale") AnnotationAssertion(Annotation( "VSAO:0000156") Annotation( ) "pectoral girdle") AnnotationAssertion(Annotation( "TAO:0000407") "scapular girdle") AnnotationAssertion( "UBERON:0007831") @@ -202938,7 +202606,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Irregular_bone") AnnotationAssertion( "os irregulare") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Irregular_bone") Annotation( ) "os irregulare") +AnnotationAssertion(Annotation( "Wikipedia:Irregular_bone") Annotation( ) "os irregulare") AnnotationAssertion( "UBERON:0008001") AnnotationAssertion(rdfs:label "irregular bone") SubClassOf(Annotation( "FMA") ) @@ -203010,7 +202678,7 @@ AnnotationAssertion( "SCTID:372177002") AnnotationAssertion( "Wikipedia:Nail_plate") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Nail_plate") Annotation( ) "lamina unguis") +AnnotationAssertion(Annotation( "Wikipedia:Nail_plate") Annotation( ) "lamina unguis") AnnotationAssertion( "UBERON:0008198") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nail plate") @@ -203047,7 +202715,7 @@ AnnotationAssertion( "Wikipedia:Pelvic_cavity") AnnotationAssertion(Annotation( "FMA:9738") "space of pelvic compartment") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pelvic_cavity") Annotation( ) "cavitas pelvis") +AnnotationAssertion(Annotation( "Wikipedia:Pelvic_cavity") Annotation( ) "cavitas pelvis") AnnotationAssertion( "UBERON:0008203") AnnotationAssertion(rdfs:label "pelvic cavity") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg"^^xsd:anyURI) @@ -203139,12 +202807,12 @@ AnnotationAssertion( "FMA:56665") AnnotationAssertion( "GAID:1259") AnnotationAssertion( "MA:0002467") -AnnotationAssertion( "MESH:D010513") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D010513") AnnotationAssertion( "SCTID:245775004") AnnotationAssertion( "Wikipedia:Periodontal_fiber") -AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") Annotation( ) "fibra periodontalis") -AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") Annotation( ) "periodontal fiber") -AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") Annotation( ) "periodontal fibre") +AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") Annotation( ) "fibra periodontalis") +AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") Annotation( ) "periodontal fiber") +AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") Annotation( ) "periodontal fibre") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Periodontal_ligament") "PDL") AnnotationAssertion(Annotation( "BTO:0001020") "alveolar periosteum") @@ -203269,15 +202937,15 @@ AnnotationAssertion( "ncithesaurus:Plantar_Region") "UMLS:C0230463") AnnotationAssertion( "Wikipedia:Sole_(foot)") AnnotationAssertion( "galen:SoleOfFoot") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "planta") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "planta") AnnotationAssertion(Annotation( "FMA:25000") "plantar part of foot") AnnotationAssertion(Annotation( "FMA:25000") "plantar region") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "regio plantaris") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "regio plantaris") AnnotationAssertion(Annotation( "FMA:25000") "sole") AnnotationAssertion(Annotation( "FMA:25000") "sole of foot") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Sole_(foot)") "pelma") -AnnotationAssertion(Annotation( "Wikipedia:Sole_(foot)") Annotation( ) "planta") +AnnotationAssertion(Annotation( "Wikipedia:Sole_(foot)") Annotation( ) "planta") AnnotationAssertion(Annotation( "Wikipedia:Sole_(foot)") "sole of foot") AnnotationAssertion(Annotation( "Wikipedia:Sole_(foot)") "sole of the foot") AnnotationAssertion(Annotation( "Wikipedia:Sole_(foot)") "soles of the feet") @@ -203488,7 +203156,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Intertarsal_articulations") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MESH:A02.835.583.378.831") "articulationes intertarsale") -AnnotationAssertion(Annotation( "Wikipedia:Intertarsal_articulations") Annotation( ) "articulationes intertarsales") +AnnotationAssertion(Annotation( "Wikipedia:Intertarsal_articulations") Annotation( ) "articulationes intertarsales") AnnotationAssertion(Annotation( "MESH:A02.835.583.378.831") "articulationes intertarseae") AnnotationAssertion(Annotation( "MESH:A02.835.583.378.831") "intermetatarsal joint") AnnotationAssertion(Annotation( "Wikipedia:Intertarsal_articulations") "intertarsal") @@ -203572,7 +203240,7 @@ AnnotationAssertion( "ncithesaurus:Head_of_the_Fibula") "UMLS:C0223908") AnnotationAssertion( "Wikipedia:Head_of_fibula") AnnotationAssertion( "galen:HeadOfFibula") -AnnotationAssertion(Annotation( "Wikipedia:Head_of_fibula") Annotation( ) "caput fibulae") +AnnotationAssertion(Annotation( "Wikipedia:Head_of_fibula") Annotation( ) "caput fibulae") AnnotationAssertion(Annotation( "FMA:33729") "head of fibula") AnnotationAssertion(Annotation( "FMA:33729") "proximal end of fibula") AnnotationAssertion(Annotation( "FMA:33729") "upper end of fibula") @@ -203615,7 +203283,7 @@ AnnotationAssertion( "Wikipedia:Dorsal_venous_arch_of_the_foot") "arcus venosus dorsalis pedis") AnnotationAssertion(Annotation( "FMA:44356") "dorsal venous arch of foot") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Dorsal_venous_arch_of_the_foot") Annotation( ) "arcus venosus dorsalis pedis") +AnnotationAssertion(Annotation( "Wikipedia:Dorsal_venous_arch_of_the_foot") Annotation( ) "arcus venosus dorsalis pedis") AnnotationAssertion( "UBERON:0008783") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dorsal venous arch") @@ -203670,10 +203338,10 @@ AnnotationAssertion( "SCTID:245753001") AnnotationAssertion( "Wikipedia:Gingival_sulcus") AnnotationAssertion(Annotation( "FMA:74580") "gingival sulcus") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "sulcus gingivalis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "sulcus gingivalis") AnnotationAssertion( "tooth-gingiva interface") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Gingival_sulcus") Annotation( ) "sulcus gingivalis") +AnnotationAssertion(Annotation( "Wikipedia:Gingival_sulcus") Annotation( ) "sulcus gingivalis") AnnotationAssertion( "UBERON:0008805") AnnotationAssertion(rdfs:label "gingival groove") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG"^^xsd:anyURI) @@ -203687,7 +203355,7 @@ AnnotationAssertion(Annotation( "this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition") AnnotationAssertion(Annotation( "2012-08-14") Annotation( "TAO:0002036") Annotation( "TAO") Annotation( "TAO:wd") "Surface structure that is an external structure of a male organism through which sperm is transferred to a female organism during mating.[TAO]") AnnotationAssertion( "AAO:0010255") -AnnotationAssertion( "FBbt:00004850") +AnnotationAssertion(Annotation( ) "FBbt:00004850") AnnotationAssertion( "HAO:0000091") AnnotationAssertion( "TAO:0002036") AnnotationAssertion( "TGMA:0000585") @@ -203733,7 +203401,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "OBOL:automatic") "A head that is part of a embryo.") AnnotationAssertion( "CALOHA:TS-0246") -AnnotationAssertion( "FBbt:00000155") +AnnotationAssertion(Annotation( ) "FBbt:00000155") AnnotationAssertion( "FMA:293011") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0008816") @@ -203789,7 +203457,7 @@ AnnotationAssertion( "EMAPA:36551") AnnotationAssertion( "FMA:62780") AnnotationAssertion( "MA:0002534") -AnnotationAssertion( "MESH:D011663") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D011663") AnnotationAssertion( "NCIT:C13273") AnnotationAssertion(Annotation( "ncithesaurus:Lung_Surfactant") "UMLS:C0034085") AnnotationAssertion( "Wikipedia:Pulmonary_surfactant") @@ -203817,7 +203485,7 @@ AnnotationAssertion( "XAO:0000101") AnnotationAssertion(Annotation( "XAO:0000101") "liver diverticulum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Hepatic_diverticulum") Annotation( ) "diverticulum hepaticum") +AnnotationAssertion(Annotation( "Wikipedia:Hepatic_diverticulum") Annotation( ) "diverticulum hepaticum") AnnotationAssertion( "UBERON:0008835") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hepatic diverticulum") @@ -203937,7 +203605,7 @@ AnnotationAssertion( "Wikipedia:Pyloric_canal") AnnotationAssertion(Annotation( "Wikipedia:Pyloric_canal") "canalis pyloricus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Pyloric_canal") Annotation( ) "canalis pyloricus") +AnnotationAssertion(Annotation( "Wikipedia:Pyloric_canal") Annotation( ) "canalis pyloricus") AnnotationAssertion( "UBERON:0008858") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pyloric canal") @@ -204028,8 +203696,8 @@ AnnotationAssertion( "SCTID:361365004") AnnotationAssertion(Annotation( "ncithesaurus:Pulmonary_Acinus") "UMLS:C0225696") AnnotationAssertion( "Wikipedia:Acinus#The_Lungs") -AnnotationAssertion(Annotation( "FMA:7313") Annotation( "FMA:TA") Annotation( ) "acinus pulmonaris") -AnnotationAssertion(Annotation( "FMA:7313") Annotation( "FMA:TA") Annotation( ) "arbor alveolaris") +AnnotationAssertion(Annotation( "FMA:7313") Annotation( "FMA:TA") Annotation( ) "acinus pulmonaris") +AnnotationAssertion(Annotation( "FMA:7313") Annotation( "FMA:TA") Annotation( ) "arbor alveolaris") AnnotationAssertion(Annotation( "PMID:37025383") Annotation( ) "pulmonary acini") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0008874") @@ -204161,8 +203829,8 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Rectal_venous_plexus") "haemorrhoidal plexus") AnnotationAssertion(Annotation( "Wikipedia:Rectal_venous_plexus") "hemorrhoidal plexus") -AnnotationAssertion(Annotation( "Wikipedia:Rectal_venous_plexus") Annotation( ) "plexus haemorrhoidalis") -AnnotationAssertion(Annotation( "Wikipedia:Rectal_venous_plexus") Annotation( ) "plexus venosus rectalis") +AnnotationAssertion(Annotation( "Wikipedia:Rectal_venous_plexus") Annotation( ) "plexus haemorrhoidalis") +AnnotationAssertion(Annotation( "Wikipedia:Rectal_venous_plexus") Annotation( ) "plexus venosus rectalis") AnnotationAssertion( "UBERON:0008887") AnnotationAssertion(rdfs:label "rectal venous plexus") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png"^^xsd:anyURI) @@ -204241,7 +203909,7 @@ AnnotationAssertion(Annotation( "2012-06-20") Annotation( "AAO:0001004") Annotation( "AAO") "relationship loss: subclass lateral line receptor (AAO:0010705)[AAO]") AnnotationAssertion(Annotation( "ZFA:0000243") "lateral line organ") AnnotationAssertion( "AAO:0001004") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006219") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006219") AnnotationAssertion( "EFO:0003513") AnnotationAssertion( "TAO:0000243") AnnotationAssertion( "ZFA:0000243") @@ -204317,7 +203985,7 @@ SubClassOf(Annotation( "not # Class: (substratum of layer of retina) -AnnotationAssertion(Annotation( "UBERON:CL_meeting_20110725") Annotation( "http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html") ".") +AnnotationAssertion(Annotation( "UBERON:CL_meeting_20110725") "Missing definition for term UBERON:0008921. Please replace it using linked reference.") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0008921") AnnotationAssertion(rdfs:label "substratum of layer of retina") @@ -204479,6 +204147,7 @@ AnnotationAssertion(Annotation( "BTO:0000337") AnnotationAssertion( "EMAPA:35275") AnnotationAssertion( "MA:0003121") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D003795") AnnotationAssertion( "NCIT:C34138") AnnotationAssertion( "SCTID:110975002") AnnotationAssertion( "Wikipedia:Dental_follicle") @@ -204501,7 +204170,7 @@ AnnotationAssertion( "BTO:0001162") AnnotationAssertion( "EMAPA:35141") AnnotationAssertion( "MA:0003040") -AnnotationAssertion( "MESH:D001050") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D001050") AnnotationAssertion( "SCTID:361698000") AnnotationAssertion( "Wikipedia:Apocrine") AnnotationAssertion( "true apocrine gland") @@ -204602,7 +204271,7 @@ AnnotationAssertion(Annotation( "MA:th") "EMAPA:37131") AnnotationAssertion( "MA:0002078") AnnotationAssertion( "SCTID:244307000") -AnnotationAssertion(Annotation( ) "arteria vesicali") +AnnotationAssertion(Annotation( ) "arteria vesicali") AnnotationAssertion(Annotation( ) "vesical arteries") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0009027") @@ -204615,8 +204284,8 @@ AnnotationAssertion(Annotation( "MA:th") "EMAPA:37184") AnnotationAssertion( "MA:0002202") AnnotationAssertion( "SCTID:395225000") -AnnotationAssertion(Annotation( "doi:10.1002/ca.23705") Annotation( ) "vena pudendae") -AnnotationAssertion(Annotation( "doi:10.1002/ca.23705") Annotation( ) "vena pudendales") +AnnotationAssertion(Annotation( "doi:10.1002/ca.23705") Annotation( ) "vena pudendae") +AnnotationAssertion(Annotation( "doi:10.1002/ca.23705") Annotation( ) "vena pudendales") AnnotationAssertion( "uberon") AnnotationAssertion( "pudic vein") AnnotationAssertion( "UBERON:0009029") @@ -204697,7 +204366,7 @@ AnnotationAssertion( "SCTID:303052003") AnnotationAssertion( "Wikipedia:Prostatic_venous_plexus") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Prostatic_venous_plexus") Annotation( ) "plexus venosus prostaticus") +AnnotationAssertion(Annotation( "Wikipedia:Prostatic_venous_plexus") Annotation( ) "plexus venosus prostaticus") AnnotationAssertion(Annotation( "FMA:29711") "pudendal venous plexus") AnnotationAssertion( "UBERON:0009042") AnnotationAssertion( ) @@ -204774,6 +204443,7 @@ SubClassOf(Annotation( "KUP AnnotationAssertion(Annotation( "BTO:0004733") "An organism containing a developing embryo, fetus, or unborn offspring within the body.") AnnotationAssertion( "BTO:0004733") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "IDOMAL:0000443") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0004733") "gravid") AnnotationAssertion(Annotation( "BTO:0004733") "pregnant adult") @@ -204895,7 +204565,7 @@ SubClassOf(Annotation( "ZFA # Class: (epibranchial ganglion) AnnotationAssertion(Annotation( "PMID:20133851") Annotation( "ZFIN:curator") "Cranial ganglion which develops from an epibranchial placode.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006250") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006250") AnnotationAssertion( "TAO:0001555") AnnotationAssertion( "ZFA:0001555") AnnotationAssertion(Annotation( "ZFA:0001555") Annotation( ) "epibranchial ganglia") @@ -205245,10 +204915,10 @@ AnnotationAssertion( "Wikipedia:Axilla") "arm pit") AnnotationAssertion(Annotation( "Wikipedia:Axilla") "armpit") AnnotationAssertion(Annotation( "FMA:24864") "axillary region") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "regio axillaris") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "regio axillaris") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Axilla") "armpits") -AnnotationAssertion(Annotation( "Wikipedia:Axilla") Annotation( ) "axilla") +AnnotationAssertion(Annotation( "Wikipedia:Axilla") Annotation( ) "axilla") AnnotationAssertion(Annotation( "Wikipedia:Axilla") "axillae") AnnotationAssertion(Annotation( "Wikipedia:Axilla") "axillary region") AnnotationAssertion(Annotation( "Wikipedia:Axilla") "oxter") @@ -206284,7 +205954,7 @@ SubClassOf( "OBOL:automatic") "A tooth row that is part of a skeleton of lower jaw.") AnnotationAssertion( "EHDAA2:0001029") AnnotationAssertion( "FMA:55635") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "arcus dentalis inferior") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "arcus dentalis inferior") AnnotationAssertion(Annotation( "FMA:55635") "lower dental arcade") AnnotationAssertion(Annotation( "EHDAA2:0001029") "lower jaw teeth") AnnotationAssertion(Annotation( "FMA:55635") "set of all lower teeth") @@ -206300,7 +205970,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "OBOL:automatic") "A tooth row that is part of a skeleton of upper jaw.") AnnotationAssertion( "EHDAA2:0002129") AnnotationAssertion( "FMA:55634") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "arcus dentalis superior") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "arcus dentalis superior") AnnotationAssertion(Annotation( "FMA:55634") "set of all upper teeth") AnnotationAssertion(Annotation( "FMA:55634") "upper dental arcade") AnnotationAssertion(Annotation( "EHDAA2:0002129") "upper jaw teeth") @@ -206807,7 +206477,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (digestive tract diverticulum) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "Branch or outpocketing of the digestive tract.") -AnnotationAssertion( "FBbt:00100316") +AnnotationAssertion(Annotation( ) "FBbt:00100316") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FBbt:00100316") "diverticulum of gut") AnnotationAssertion( "intestinal pouch") @@ -206991,7 +206661,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0000040") Annotation( "XAO:0003207") "carpus") AnnotationAssertion(Annotation( "AAO:0000201") "fore mesopodium") -AnnotationAssertion(Annotation( "Wikipedia:Carpus") Annotation( ) "ossa carpi") +AnnotationAssertion(Annotation( "Wikipedia:Carpus") Annotation( ) "ossa carpi") AnnotationAssertion(Annotation( "FMA:71335") "set of carpal bones") AnnotationAssertion( "UBERON:0009880") AnnotationAssertion(rdfs:label "carpal skeleton") @@ -207025,7 +206695,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Anal_columns") AnnotationAssertion(Annotation( "FMA:15713") "column of Morgagni") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Anal_columns") Annotation( ) "columnae anales") +AnnotationAssertion(Annotation( "Wikipedia:Anal_columns") Annotation( ) "columnae anales") AnnotationAssertion( "UBERON:0009882") AnnotationAssertion(rdfs:label "anal column") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png"^^xsd:anyURI) @@ -207070,7 +206740,7 @@ AnnotationAssertion(Annotation( "kidney interlobar artery") AnnotationAssertion(Annotation( "MP:0011355") "renal interlobar artery") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Interlobar_arteries") Annotation( ) "arteriae interlobares renis") +AnnotationAssertion(Annotation( "Wikipedia:Interlobar_arteries") Annotation( ) "arteriae interlobares renis") AnnotationAssertion(Annotation( "FMA:71637") "interlobar arteries of kidney") AnnotationAssertion(Annotation( "FMA:71637") "set of interlobar arteries of kidney") AnnotationAssertion( "UBERON:0009885") @@ -207092,7 +206762,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion(Annotation( "FMA:71631") "interlobar veins of kidney") AnnotationAssertion(Annotation( "FMA:71631") "set of interlobar veins of kidney") -AnnotationAssertion(Annotation( "Wikipedia:Interlobar_veins") Annotation( ) "venae interlobares renis") +AnnotationAssertion(Annotation( "Wikipedia:Interlobar_veins") Annotation( ) "venae interlobares renis") AnnotationAssertion( "UBERON:0009887") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "interlobar vein") @@ -207153,7 +206823,7 @@ AnnotationAssertion( "FMA:45737") AnnotationAssertion( "NCIT:C12990") AnnotationAssertion(Annotation( "ncithesaurus:Lobule") "UMLS:C0921005") -AnnotationAssertion(Annotation( "FMA:45737") Annotation( "FMA:TA") Annotation( ) "lobulus") +AnnotationAssertion(Annotation( "FMA:45737") Annotation( "FMA:TA") Annotation( ) "lobulus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0009911") AnnotationAssertion( ) @@ -207166,7 +206836,7 @@ AnnotationAssertion(Annotation( "FMA:45728") AnnotationAssertion( "NCIT:C13393") AnnotationAssertion( "UMLS:C0796494") -AnnotationAssertion(Annotation( "FMA:45728") Annotation( "FMA:TA") Annotation( ) "lobus") +AnnotationAssertion(Annotation( "FMA:45728") Annotation( "FMA:TA") Annotation( ) "lobus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0009912") AnnotationAssertion( ) @@ -207186,7 +206856,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Renal_lobe") Annotation( ) "lobi renalis") AnnotationAssertion(Annotation( "http://www.mondofacto.com/facts/dictionary?lobus+renalis") "lobus renalis") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Renal_lobe") Annotation( ) "lobi renales") +AnnotationAssertion(Annotation( "Wikipedia:Renal_lobe") Annotation( ) "lobi renales") AnnotationAssertion( "UBERON:0009913") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal lobe") @@ -207205,7 +206875,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MP:0011382") Annotation( "Wikipedia:Cortical_lobule") "cortical lobule") AnnotationAssertion(Annotation( "http://www.mondofacto.com/facts/dictionary?lobus+renalis") "cortical lobule of kidney") -AnnotationAssertion(Annotation( "Wikipedia:Cortical_lobule") Annotation( ) "lobuli corticales renis") +AnnotationAssertion(Annotation( "Wikipedia:Cortical_lobule") Annotation( ) "lobuli corticales renis") AnnotationAssertion(Annotation( "http://www.mondofacto.com/facts/dictionary?lobus+renalis") "lobulus corticalis renalis") AnnotationAssertion(Annotation( "http://www.mondofacto.com/facts/dictionary?lobus+renalis") "renal cortical lobule") AnnotationAssertion(Annotation( "http://www.mondofacto.com/facts/dictionary?lobus+renalis") "renculus") @@ -207334,7 +207004,7 @@ AnnotationAssertion( "ZFA:0001309") AnnotationAssertion(Annotation( "ZFA:0001309") Annotation( ) "neurogenic placodes") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Neurogenic_placodes") Annotation( ) "placodae neurogenicae") +AnnotationAssertion(Annotation( "Wikipedia:Neurogenic_placodes") Annotation( ) "placodae neurogenicae") AnnotationAssertion( "UBERON:0009955") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neurogenic placode") @@ -207400,8 +207070,8 @@ AnnotationAssertion( "MA:0000761") AnnotationAssertion( "NCIT:C33605") AnnotationAssertion(Annotation( "ncithesaurus:Splenic_Sinus") "UMLS:C1179415") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "sinus lienalis") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "sinus splenicus") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "sinus lienalis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "sinus splenicus") AnnotationAssertion(Annotation( "FMA:62815") "splenic sinus") AnnotationAssertion(Annotation( "FMA:62815") "venous sinus of red pulp of spleen") AnnotationAssertion( "uberon") @@ -207514,7 +207184,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "CARO:0010000") -AnnotationAssertion( "FBbt:00100313") +AnnotationAssertion(Annotation( ) "FBbt:00100313") AnnotationAssertion(Annotation( "FBbt:00100313") "multicellular structure") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010000") @@ -207528,7 +207198,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "CARO:0010001") "A small cluster of cells of various types which form a discrete structure, largely delimited by a morphological boundary and whose components work together to make the whole structure capable of a specific function.") AnnotationAssertion( "CARO:0010001") -AnnotationAssertion( "FBbt:00007229") +AnnotationAssertion(Annotation( ) "FBbt:00007229") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010001") AnnotationAssertion( ) @@ -207721,7 +207391,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Anterior_tongue") "buccal part of the tongue") AnnotationAssertion(Annotation( "Wikipedia:Anterior_tongue") "front of the tongue") AnnotationAssertion(Annotation( "Wikipedia:Anterior_tongue") "oral part of the tongue") -AnnotationAssertion(Annotation( "Wikipedia:Anterior_tongue") Annotation( ) "pars anterior dorsi linguae") +AnnotationAssertion(Annotation( "Wikipedia:Anterior_tongue") Annotation( ) "pars anterior dorsi linguae") AnnotationAssertion( "UBERON:0010032") AnnotationAssertion(rdfs:label "anterior part of tongue") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg"^^xsd:anyURI) @@ -207742,7 +207412,7 @@ AnnotationAssertion( "gastric fundus gland") AnnotationAssertion( "gastric gland of fundus of stomach") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Fundic_glands") Annotation( ) "glandulae gastricae") +AnnotationAssertion(Annotation( "Wikipedia:Fundic_glands") Annotation( ) "glandulae gastricae") AnnotationAssertion( "UBERON:0010038") AnnotationAssertion(rdfs:label "fundic gastric gland") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg"^^xsd:anyURI) @@ -208197,11 +207867,13 @@ SubClassOf(Annotation( "FMA # Class: (male accessory sex gland) AnnotationAssertion(Annotation( "BTO:0004798") "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male.") +AnnotationAssertion( ) AnnotationAssertion( "BTO:0004798") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0004798") "male accessory gland") AnnotationAssertion( "male accessory reproductive gland") AnnotationAssertion( "UBERON:0010147") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "male accessory sex gland") SubClassOf(Annotation( "BTO") ) @@ -208228,7 +207900,7 @@ AnnotationAssertion(Annotation( "uberon") AnnotationAssertion( "spheno-frontal suture") AnnotationAssertion(Annotation( "Wikipedia:Sphenofrontal_suture") "sphenofrontal") -AnnotationAssertion(Annotation( "Wikipedia:Sphenofrontal_suture") Annotation( ) "sutura sphenofrontalis") +AnnotationAssertion(Annotation( "Wikipedia:Sphenofrontal_suture") Annotation( ) "sutura sphenofrontalis") AnnotationAssertion( "UBERON:0010156") AnnotationAssertion(rdfs:label "sphenofrontal suture") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png"^^xsd:anyURI) @@ -208279,7 +207951,7 @@ AnnotationAssertion(Annotation( "FMA:70752") AnnotationAssertion(Annotation( "FMA:70752") "hairs") AnnotationAssertion(Annotation( "FMA:70752") "hairs set") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "pili") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "pili") AnnotationAssertion(Annotation( "FMA:70752") "set of hairs") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010164") @@ -208341,7 +208013,7 @@ AnnotationAssertion( "male urethra gland") AnnotationAssertion(Annotation( "FMA:21443") "urethral gland (male)") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Urethral_gland") Annotation( ) "glandulae urethrales urethrae masculinae") +AnnotationAssertion(Annotation( "Wikipedia:Urethral_gland") Annotation( ) "glandulae urethrales urethrae masculinae") AnnotationAssertion( "UBERON:0010186") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "male urethral gland") @@ -208386,6 +208058,21 @@ AnnotationAssertion( "right atrium venous valve") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (pair of dorsal aortae) + +AnnotationAssertion(Annotation( "ISBN:0-914294-08-3") Annotation( "MP:0004787") "The paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation.") +AnnotationAssertion( "EHDAA2:0000410") +AnnotationAssertion( "EMAPA:18606") +AnnotationAssertion( "MA:0000476") +AnnotationAssertion(Annotation( "EHDAA2:0000410") "paired dorsal aortae") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0010190") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pair of dorsal aortae") +SubClassOf(Annotation( "EHDAA2") ) +SubClassOf(Annotation( "EHDAA2") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (aortic system) AnnotationAssertion( "EHDAA2:0004512") @@ -208752,7 +208439,7 @@ AnnotationAssertion( "SCTID:410035009") AnnotationAssertion( "http://palaeos.com/vertebrates/bones/gill_arches/images/ReptileHyoids.gif") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( ) "apparatus hyobranchialis") +AnnotationAssertion(Annotation( ) "apparatus hyobranchialis") AnnotationAssertion(Annotation( "http://www.biology-online.org/dictionary/Hyoid_apparatus") "apparatus hyoideus") AnnotationAssertion(Annotation( "AAO:0000225") "hyobranchial apparatus") AnnotationAssertion(Annotation( "AAO:0000225") "hyolingual system") @@ -208793,7 +208480,7 @@ AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_punctum") "lacrimal point") AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_punctum") Annotation( ) "lacrimal puncta") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_punctum") Annotation( ) "puncta lacrimalia") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_punctum") Annotation( ) "puncta lacrimalia") AnnotationAssertion( "UBERON:0010284") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lacrimal punctum") @@ -208833,7 +208520,6 @@ SubClassOf(Annotation( "ZFA # Class: (layer of sclera) -AnnotationAssertion(Annotation( "Wikipedia:Sclera#Histology") ".") AnnotationAssertion( "Wikipedia:Sclera#Histology") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010291") @@ -208861,7 +208547,7 @@ AnnotationAssertion(Annotation( "FMA:58365") "scleral stroma") AnnotationAssertion(Annotation( "FMA:58365") "stroma of sclera") AnnotationAssertion(Annotation( "FMA:58365") "subsantia propria sclerae") -AnnotationAssertion(Annotation( "FMA:58365") Annotation( "FMA:TA") Annotation( ) "substantia propria sclerae") +AnnotationAssertion(Annotation( "FMA:58365") Annotation( "FMA:TA") Annotation( ) "substantia propria sclerae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010295") AnnotationAssertion(rdfs:label "substantia propria of sclera") @@ -208884,7 +208570,7 @@ AnnotationAssertion(Annotation( "May be obsoleted once added to insect ontology. Coordinate with cell type in CL") AnnotationAssertion( "BTO:0004800") AnnotationAssertion( "EFO:0000250") -AnnotationAssertion( "FBbt:00000095") +AnnotationAssertion(Annotation( ) "FBbt:00000095") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0004800") "amnion-serosa") AnnotationAssertion( "UBERON:0010302") @@ -209226,11 +208912,11 @@ AnnotationAssertion(Annotation( "currently classified as a zone of a bone organ, but exists prior to bone ossifying") AnnotationAssertion( "FMA:75436") AnnotationAssertion( "Wikipedia:Ossification_center") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "centrum ossificationis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "centrum ossificationis") AnnotationAssertion(Annotation( "FMA:75436") "ossification centre") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Ossification_center") "center of ossification") -AnnotationAssertion(Annotation( "Wikipedia:Ossification_center") Annotation( ) "centrum ossificationis") +AnnotationAssertion(Annotation( "Wikipedia:Ossification_center") Annotation( ) "centrum ossificationis") AnnotationAssertion( "UBERON:0010355") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ossification center") @@ -209358,7 +209044,7 @@ AnnotationAssertion( "FMA:70887") "conjunctival veins") AnnotationAssertion(Annotation( "FMA:70887") "conjunctival veins set") AnnotationAssertion(Annotation( "FMA:70887") "set of conjunctival veins") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "venae conjunctivales") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "venae conjunctivales") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010366") AnnotationAssertion(rdfs:label "conjunctival vasculature") @@ -209381,7 +209067,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "ncithesaurus:Pulmonary_Lobule") "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa.") AnnotationAssertion( "FMA:75739") AnnotationAssertion( "NCIT:C33428") -AnnotationAssertion(Annotation( "FMA:75739") Annotation( "FMA:TA") Annotation( ) "lobulus pulmonis") +AnnotationAssertion(Annotation( "FMA:75739") Annotation( "FMA:TA") Annotation( ) "lobulus pulmonis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0010368") AnnotationAssertion(rdfs:label "pulmonary lobule") @@ -209395,7 +209081,7 @@ AnnotationAssertion( "http://medical-dictionary.thefreedictionary.com/secondary+pulmonary+lobule") "a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles.") AnnotationAssertion( ) AnnotationAssertion( "FMA:7414") -AnnotationAssertion(Annotation( "FMA:7414") Annotation( "FMA:TA") Annotation( ) "lobulus pulmonis secondarius") +AnnotationAssertion(Annotation( "FMA:7414") Annotation( "FMA:TA") Annotation( ) "lobulus pulmonis secondarius") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "PMID:18403324") "respiratory lobule") AnnotationAssertion( "UBERON:0010369") @@ -209835,11 +209521,11 @@ AnnotationAssertion( "Wikipedia:Ciliary_processes") AnnotationAssertion(Annotation( "FMA:76551") "ciliary processes") AnnotationAssertion(Annotation( "FMA:76551") "ciliary processes set") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "processus ciliares") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "processus ciliares") AnnotationAssertion(Annotation( "FMA:76551") "set of ciliary processes") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Ciliary_processes") "ciliary process") -AnnotationAssertion(Annotation( "Wikipedia:Ciliary_processes") Annotation( ) "processus ciliares") +AnnotationAssertion(Annotation( "Wikipedia:Ciliary_processes") Annotation( ) "processus ciliares") AnnotationAssertion( "UBERON:0010427") AnnotationAssertion(rdfs:label "ciliary processes") AnnotationAssertion( "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png"^^xsd:anyURI) @@ -209862,7 +209548,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Flat_bone") AnnotationAssertion( "galen:FlatBone") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "Wikipedia:Flat_bone") Annotation( ) "os planum") +AnnotationAssertion(Annotation( "Wikipedia:Flat_bone") Annotation( ) "os planum") AnnotationAssertion( "UBERON:0010428") AnnotationAssertion(rdfs:comment "Examples: cranium, the ilium, sternum, rib cage, the sacrum and the scapula; the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs") AnnotationAssertion(rdfs:label "flat bone") @@ -209954,7 +209640,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (metanephros induced blastemal cells) -AnnotationAssertion(Annotation( "http://www.embryology.ch/anglais/turinary/urinhaute03.html") ".") AnnotationAssertion(Annotation( "EMAPA") "different versions of EMAPA have different labels for the same classes. In vHOG this is part of metanephros cortex but this leads to a cycle in basic.") AnnotationAssertion( "EHDAA2:0001143") AnnotationAssertion( "EHDAA:7007") @@ -210125,8 +209810,8 @@ AnnotationAssertion(Annotation( "metacarpal skeleton") AnnotationAssertion(Annotation( "FMA:71336") "metacarpals [I-V]") AnnotationAssertion(Annotation( "FMA:71336") "metacarpals set") -AnnotationAssertion(Annotation( "FMA:71336") Annotation( "FMA:TA") Annotation( ) "ossa metacarpalia [I-V]") -AnnotationAssertion(Annotation( "FMA:71336") Annotation( "FMA:TA") Annotation( ) "ossa metacarpi [I-V]") +AnnotationAssertion(Annotation( "FMA:71336") Annotation( "FMA:TA") Annotation( ) "ossa metacarpalia [I-V]") +AnnotationAssertion(Annotation( "FMA:71336") Annotation( "FMA:TA") Annotation( ) "ossa metacarpi [I-V]") AnnotationAssertion(Annotation( "FMA:71336") "set of metacarpal bones") AnnotationAssertion(Annotation( "FMA:71336") "set of metacarpals") AnnotationAssertion(Annotation( "FMA:71336") "set of metacarpals [I-V]") @@ -210135,7 +209820,7 @@ AnnotationAssertion( "VSAO:0005026") Annotation( "VSAO:NI") "anterior metapodium") AnnotationAssertion( "fore metapodial skeleton") AnnotationAssertion(Annotation( "AAO:0000946") Annotation( "MA:th") Annotation( "http://en.wiktionary.org/wiki/metapodial") "fore metapodium") -AnnotationAssertion(Annotation( "Wikipedia:Metacarpus") Annotation( ) "metacarpalia") +AnnotationAssertion(Annotation( "Wikipedia:Metacarpus") Annotation( ) "metacarpalia") AnnotationAssertion( "UBERON:0010544") AnnotationAssertion(rdfs:label "metacarpus skeleton") AnnotationAssertion( "https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg"^^xsd:anyURI) @@ -210159,15 +209844,15 @@ AnnotationAssertion( "FMA:71340") "metatarsal bones set") AnnotationAssertion( "metatarsal skeleton") AnnotationAssertion(Annotation( "FMA:71340") "metatarsals [I-V]") -AnnotationAssertion(Annotation( "FMA:71340") Annotation( "FMA:TA") Annotation( ) "ossa metatarsalia [I-V]") -AnnotationAssertion(Annotation( "FMA:71340") Annotation( "FMA:TA") Annotation( ) "ossa metatarsi[I-V]") +AnnotationAssertion(Annotation( "FMA:71340") Annotation( "FMA:TA") Annotation( ) "ossa metatarsalia [I-V]") +AnnotationAssertion(Annotation( "FMA:71340") Annotation( "FMA:TA") Annotation( ) "ossa metatarsi[I-V]") AnnotationAssertion( "posterior metapodial skeleton") AnnotationAssertion(Annotation( "FMA:71340") "set of metatarsal bones") AnnotationAssertion(Annotation( "FMA:71340") "set of metatarsals [I-V]") AnnotationAssertion( "skeleton of metatarsus") AnnotationAssertion( "uberon") AnnotationAssertion( "metatarsalia") -AnnotationAssertion(Annotation( "Wikipedia:Metatarsus") Annotation( ) "ossa metatarsalia") +AnnotationAssertion(Annotation( "Wikipedia:Metatarsus") Annotation( ) "ossa metatarsalia") AnnotationAssertion(Annotation( "VSAO:0005027") Annotation( "VSAO:NI") "posterior metapodium") AnnotationAssertion( "UBERON:0010545") AnnotationAssertion(rdfs:label "metatarsus skeleton") @@ -210555,7 +210240,7 @@ AnnotationAssertion(Annotation( "PHENOSCAPE:ni") "crus skeleton") AnnotationAssertion( "hindlimb zygopod skeleton") AnnotationAssertion( "posterior zeugopodium skeleton") -AnnotationAssertion(Annotation( "NominaAnatomicaVeterinaria:2005") Annotation( ) "skeleton cruris") +AnnotationAssertion(Annotation( "NominaAnatomicaVeterinaria:2005") Annotation( ) "skeleton cruris") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "AAO:0000216") "hind epipodium") AnnotationAssertion(Annotation( "VSAO:0005014") Annotation( "VSAO:NI") "hindlimb epipodium") @@ -210726,7 +210411,7 @@ EquivalentClasses( ObjectIntersec # Class: (subdivision of organism along appendicular axis) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "A major subdivision of an organism that divides an organism along an axis perpedicular to the main body anterior-posterior axis. In vertebrates, this is typically a fin or limb segment. In insects, this includes segments of appendages such as antennae, as well as segments of the insect leg.") -AnnotationAssertion( "FBbt:00007018") +AnnotationAssertion(Annotation( ) "FBbt:00007018") AnnotationAssertion(Annotation( "FBbt:00007018") "appendage segment") AnnotationAssertion( "appendicular segment") AnnotationAssertion( "uberon") @@ -211162,7 +210847,7 @@ SubClassOf(Annotation( "Wik # Class: (pharyngeal arch cartilage) AnnotationAssertion(Annotation( "OBOL:automatic") "A cartilage element that is part of a splanchnocranium.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006051") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006051") AnnotationAssertion( "EFO:0003689") AnnotationAssertion( "TAO:0001460") AnnotationAssertion( "ZFA:0001460") @@ -211315,7 +211000,7 @@ AnnotationAssertion( "NCIT:C32908") AnnotationAssertion( "SCTID:280218007") AnnotationAssertion( "Wikipedia:Lacrimal_nerve") -AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_nerve") Annotation( ) "nervus lacrimalis") +AnnotationAssertion(Annotation( "Wikipedia:Lacrimal_nerve") Annotation( ) "nervus lacrimalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011096") AnnotationAssertion(rdfs:label "lacrimal nerve") @@ -211376,7 +211061,7 @@ AnnotationAssertion( "tarso-metatarsal join") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Tarsometatarsal_articulations") "Lisfranc joint") -AnnotationAssertion(Annotation( "Wikipedia:Tarsometatarsal_articulations") Annotation( ) "articulationes tarsometatarsales") +AnnotationAssertion(Annotation( "Wikipedia:Tarsometatarsal_articulations") Annotation( ) "articulationes tarsometatarsales") AnnotationAssertion(Annotation( "Wikipedia:Tarsometatarsal_articulations") "cuboideometatarsal") AnnotationAssertion(Annotation( "Wikipedia:Tarsometatarsal_articulations") "tarsometatarsal") AnnotationAssertion(Annotation( "Wikipedia:Tarsometatarsal_articulations") "tarsometatarsal articulation") @@ -211395,12 +211080,12 @@ AnnotationAssertion(Annotation( "Wikipedia:Carpometacarpal_joint") "CMJ") AnnotationAssertion(Annotation( "Wikipedia:Carpometacarpal_joint") "carpometacarpal") AnnotationAssertion( "FMA:35287") -AnnotationAssertion( "MESH:D052737") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D052737") AnnotationAssertion( "NCIT:C32265") AnnotationAssertion( "SCTID:361842002") AnnotationAssertion(Annotation( "ncithesaurus:Carpometacarpal_Joint") "UMLS:C0224620") AnnotationAssertion( "Wikipedia:Carpometacarpal_joint") -AnnotationAssertion(Annotation( "Wikipedia:Carpometacarpal_joint") Annotation( ) "articulationes carpometacarpeæ") +AnnotationAssertion(Annotation( "Wikipedia:Carpometacarpal_joint") Annotation( ) "articulationes carpometacarpeæ") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Carpometacarpal_joint") "carpometacarpal articulation") AnnotationAssertion( "UBERON:0011119") @@ -211443,6 +211128,7 @@ SubClassOf(Annotation( "two AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A skeletal joint that connects two carpal bones.") AnnotationAssertion( "FMA:35292") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D050824") AnnotationAssertion( "NCIT:C32264") AnnotationAssertion( "SCTID:182176003") AnnotationAssertion(Annotation( "ncithesaurus:Carpal_Joint") "UMLS:C1262468") @@ -211618,8 +211304,8 @@ AnnotationAssertion( "FMA:53673") "facial skeleton") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MA:0000318") "facial bone") -AnnotationAssertion(Annotation( "Wikipedia:Facial_skeleton") Annotation( ) "ossa facialia") -AnnotationAssertion(Annotation( "Wikipedia:Facial_skeleton") Annotation( ) "ossa faciei") +AnnotationAssertion(Annotation( "Wikipedia:Facial_skeleton") Annotation( ) "ossa facialia") +AnnotationAssertion(Annotation( "Wikipedia:Facial_skeleton") Annotation( ) "ossa faciei") AnnotationAssertion(Annotation( "MA:0000318") Annotation( ) "viscerocranium") AnnotationAssertion( "UBERON:0011156") AnnotationAssertion( ) @@ -211778,7 +211464,7 @@ AnnotationAssertion(Annotation( "FMA:14971") "muscular coat of large intestine") AnnotationAssertion(Annotation( "FMA:14971") "muscular layer of large intestine") AnnotationAssertion(Annotation( "FMA:14971") "muscularis externa of large intestine") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis intestini crassi") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis intestini crassi") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011198") AnnotationAssertion(rdfs:label "muscle layer of large intestine") @@ -211797,7 +211483,7 @@ AnnotationAssertion(Annotation( "FMA:14932") "muscularis externa of small intestine") AnnotationAssertion(Annotation( "FMA:14932") "small intestine muscularis propria") AnnotationAssertion(Annotation( "FMA:14932") "tunica muscularis (intestinum tenue)") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis intestini tenuis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis intestini tenuis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011201") AnnotationAssertion(rdfs:label "muscle layer of small intestine") @@ -211853,12 +211539,14 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "FBbt:00007330") +AnnotationAssertion( ) +AnnotationAssertion(Annotation( ) "FBbt:00007330") AnnotationAssertion( "FMA:67509") AnnotationAssertion( "SCTID:91690000") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011216") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organ system subdivision") SubClassOf(Annotation( "FBbt") ) @@ -211989,7 +211677,7 @@ AnnotationAssertion(Annotation( "BTO:0002116") AnnotationAssertion( "SCTID:245489008") AnnotationAssertion( "submucosa of fallopian tube") -AnnotationAssertion(Annotation( "BTO:0002116") Annotation( ) "tela submucosa tubae uterinae") +AnnotationAssertion(Annotation( "BTO:0002116") Annotation( ) "tela submucosa tubae uterinae") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "BTO:0002116") "submucous layer of uterine tube") AnnotationAssertion( "uterine submucosa") @@ -212522,13 +212210,12 @@ SubClassOf(Annotation( "EHD # Class: (differentiated genital tubercle) -AnnotationAssertion(Annotation( "Wikipedia:Primordial_phallus") ".") AnnotationAssertion( "NCIT:C34274") AnnotationAssertion(Annotation( "ncithesaurus:Primordial_Phallus") "UMLS:C1514448") AnnotationAssertion( "Wikipedia:Primordial_phallus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Primordial_phallus") "phallus") -AnnotationAssertion(Annotation( "Wikipedia:Primordial_phallus") Annotation( ) "phallus primordialis") +AnnotationAssertion(Annotation( "Wikipedia:Primordial_phallus") Annotation( ) "phallus primordialis") AnnotationAssertion(Annotation( "Wikipedia:Primordial_phallus") "primordial phallus") AnnotationAssertion( "UBERON:0011757") AnnotationAssertion(rdfs:label "differentiated genital tubercle") @@ -212735,8 +212422,8 @@ AnnotationAssertion( "NCIT:C33007") AnnotationAssertion(Annotation( "ncithesaurus:Loose_Connective_Tissue") "UMLS:C1253917") AnnotationAssertion( "Wikipedia:Loose_connective_tissue") -AnnotationAssertion(Annotation( "FMA:19783") Annotation( "FMA:TA") Annotation( ) "textus connectivus collagenosus laxus") -AnnotationAssertion(Annotation( "FMA:19783") Annotation( "FMA:TA") Annotation( ) "textus connectivus laxus") +AnnotationAssertion(Annotation( "FMA:19783") Annotation( "FMA:TA") Annotation( ) "textus connectivus collagenosus laxus") +AnnotationAssertion(Annotation( "FMA:19783") Annotation( "FMA:TA") Annotation( ) "textus connectivus laxus") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011825") AnnotationAssertion(rdfs:label "loose connective tissue") @@ -212872,7 +212559,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "OBOL:automatic") "A skeletal ligament that is part of a sternoclavicular joint.") AnnotationAssertion( "FMA:63980") AnnotationAssertion( "SCTID:182386007") -AnnotationAssertion(Annotation( ) "ligamentum sternoclavicularis") +AnnotationAssertion(Annotation( ) "ligamentum sternoclavicularis") AnnotationAssertion(Annotation( "FMA:63980") "sternoclavicular joint ligament") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011875") @@ -212887,9 +212574,9 @@ AnnotationAssertion( "FMA:62998") "muscle coat of esophagus") AnnotationAssertion(Annotation( "FMA:62998") "muscular coat of oesophagus") AnnotationAssertion(Annotation( "FMA:62998") "muscular layer of oesophagus") -AnnotationAssertion(Annotation( "FMA:62998") Annotation( "FMA:TA") Annotation( ) "tela muscularis (oesophagus)") -AnnotationAssertion(Annotation( ) "tunica muscularis esophagi") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis oesophageae") +AnnotationAssertion(Annotation( "FMA:62998") Annotation( "FMA:TA") Annotation( ) "tela muscularis (oesophagus)") +AnnotationAssertion(Annotation( ) "tunica muscularis esophagi") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "tunica muscularis oesophageae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011878") AnnotationAssertion(rdfs:label "muscle layer of esophagus") @@ -213067,10 +212754,8 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (luminal layer of epithelium) -AnnotationAssertion( ) AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0011945") -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "luminal layer of epithelium") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -213204,7 +212889,7 @@ AnnotationAssertion( "FMA:44055") "deltoid collateral ligament of ankle joint") AnnotationAssertion(Annotation( "FMA:44055") "deltoid ligament of ankle joint") AnnotationAssertion(Annotation( "FMA:44055") "ligamentum collaterale mediale (articulatio talocruralis)") -AnnotationAssertion(Annotation( "FMA:44055") Annotation( "FMA:TA") Annotation( ) "ligamentum collaterale mediale articulationis talocruralis") +AnnotationAssertion(Annotation( "FMA:44055") Annotation( "FMA:TA") Annotation( ) "ligamentum collaterale mediale articulationis talocruralis") AnnotationAssertion(Annotation( "FMA:TA") "ligamentum deltoideum") AnnotationAssertion(Annotation( "FMA:44055") "ligamentum deltoideum (articulatio talocruralis)") AnnotationAssertion(Annotation( "FMA:44055") "medial collateral ligament of ankle joint") @@ -213450,6 +213135,20 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (dermatological-muscosal system) + +AnnotationAssertion(Annotation( "https://github.com/obophenotype/uberon/issues/53") "Anatomical system that consists of the integumental system plus all mucosae and submucosae.") +AnnotationAssertion( "uberon") +AnnotationAssertion(Annotation( "OBI:MC") "dermatological system") +AnnotationAssertion( "UBERON:0012125") +AnnotationAssertion(rdfs:label "dermatological-muscosal system") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (segment of autopod) AnnotationAssertion( "uberon") @@ -213646,9 +213345,9 @@ AnnotationAssertion(Annotation( "FMA:19650") "external urethral orifice") AnnotationAssertion(Annotation( "FMA:19650") "external urethral ostium") AnnotationAssertion(Annotation( "FMA:19650") "external urinary meatus") -AnnotationAssertion(Annotation( ) "meatus urinarius") -AnnotationAssertion(Annotation( ) "orificium urethrae externum") -AnnotationAssertion(Annotation( ) "orificium urethræ externum") +AnnotationAssertion(Annotation( ) "meatus urinarius") +AnnotationAssertion(Annotation( ) "orificium urethrae externum") +AnnotationAssertion(Annotation( ) "orificium urethræ externum") AnnotationAssertion(Annotation( "FMA:19650") "urethral meatus") AnnotationAssertion( "uberon") AnnotationAssertion( "urinary meatus") @@ -213669,7 +213368,7 @@ AnnotationAssertion( "FMA:85265") "external orifice of male urethra") AnnotationAssertion(Annotation( "FMA:85265") "external urethral orifice (male)") AnnotationAssertion(Annotation( "MA:0002642") "male urethra ostium") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "ostium urethrae externum (urethra masculina)") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "ostium urethrae externum (urethra masculina)") AnnotationAssertion(Annotation( "EMAPA:36434") "urethral meatus of penile urethra") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "EMAPA:36434") "distal urethral opening of male") @@ -213689,9 +213388,9 @@ AnnotationAssertion( "FMA:85263") "internal meatus of urethra") AnnotationAssertion(Annotation( "FMA:85263") "internal urethral orifice of urinary bladder") AnnotationAssertion(Annotation( "FMA:85263") "internal urethral ostium") -AnnotationAssertion(Annotation( "MP:0011782") Annotation( ) "orificium urethrae internum") -AnnotationAssertion(Annotation( ) "ostium orificium internum") -AnnotationAssertion(Annotation( "Wikipedia:Internal_urethral_orifice") Annotation( ) "ostium urethrae internum") +AnnotationAssertion(Annotation( "MP:0011782") Annotation( ) "orificium urethrae internum") +AnnotationAssertion(Annotation( ) "ostium orificium internum") +AnnotationAssertion(Annotation( "Wikipedia:Internal_urethral_orifice") Annotation( ) "ostium urethrae internum") AnnotationAssertion(Annotation( "FMA:85263") "vesicourethral orifice") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MP:0011782") "internal urethral ostium") @@ -213743,7 +213442,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Vaginal_portion_of_cervix") AnnotationAssertion(Annotation( "BTO:0001850") Annotation( "FMA:86484") "ectocervix") AnnotationAssertion(Annotation( "Wikipedia:Vaginal_portion_of_cervix") "portio vaginalis") -AnnotationAssertion(Annotation( "BTO:0001850") Annotation( ) "portio vaginalis cervicis") +AnnotationAssertion(Annotation( "BTO:0001850") Annotation( ) "portio vaginalis cervicis") AnnotationAssertion(Annotation( "CALOHA:TS-1098") "uterine ectocervix") AnnotationAssertion(Annotation( "FMA:77056") "vaginal part of cervix") AnnotationAssertion( "uberon") @@ -213867,8 +213566,8 @@ AnnotationAssertion( "SCTID:368881007") AnnotationAssertion(Annotation( "ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC") "UMLS:C1522269") AnnotationAssertion( "Wikipedia:Nasal_glands") -AnnotationAssertion(Annotation( ) "glandula nasalis") -AnnotationAssertion(Annotation( ) "glandulae nasales") +AnnotationAssertion(Annotation( ) "glandula nasalis") +AnnotationAssertion(Annotation( ) "glandulae nasales") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0012278") AnnotationAssertion( ) @@ -214041,7 +213740,7 @@ SubClassOf( "FMA:45568") Annotation( "Wikipedia:Stratified_squamous_epithelium#Keratinized") "Keratinized stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesize and accumulate keratin.") AnnotationAssertion( "FMA:45568") AnnotationAssertion( "Wikipedia:Stratified_squamous_epithelium#Keratinized") -AnnotationAssertion(Annotation( "FMA:45568") Annotation( ) "epithelium stratificatum squamosum cornificatum") +AnnotationAssertion(Annotation( "FMA:45568") Annotation( ) "epithelium stratificatum squamosum cornificatum") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0012329") AnnotationAssertion(rdfs:label "keratinized stratified squamous epithelium") @@ -214075,7 +213774,7 @@ AnnotationAssertion( "FMA:16516") "broad uterine ligament") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "MESH:A02.513.170") "broad ligament") -AnnotationAssertion(Annotation( ) "ligamentum latum uteri") +AnnotationAssertion(Annotation( ) "ligamentum latum uteri") AnnotationAssertion( "UBERON:0012332") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "broad ligament of uterus") @@ -214372,7 +214071,7 @@ AnnotationAssertion(Annotation( "FMA:14935") "circular muscle of small intestine") AnnotationAssertion(Annotation( "FMA:14935") "short pitch helicoidal muscle layer of small intestine") AnnotationAssertion(Annotation( "FMA:14935") "stratum circulare (tunica muscularis)(intestinum tenue)") -AnnotationAssertion(Annotation( "FMA:14935") Annotation( "FMA:TA") Annotation( ) "stratum circulare tunicae muscularis intestini tenuis") +AnnotationAssertion(Annotation( "FMA:14935") Annotation( "FMA:TA") Annotation( ) "stratum circulare tunicae muscularis intestini tenuis") AnnotationAssertion(Annotation( "FMA:TA") "stratum helicoidale brevis gradus tunicae muscularis intestini tenuis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0012401") @@ -214394,7 +214093,7 @@ AnnotationAssertion(Annotation( "FMA:14936") "longitudinal muscle of small intestine") AnnotationAssertion(Annotation( "FMA:TA") "stratum helicoidale longi gradus tunicae muscularis intestini tenuis") AnnotationAssertion(Annotation( "FMA:14936") "stratum longitudinale (tunica muscularis) (intestinum tenue)") -AnnotationAssertion(Annotation( "FMA:14936") Annotation( "FMA:TA") Annotation( ) "stratum longitudinale tunicae muscularis intestini tenuis") +AnnotationAssertion(Annotation( "FMA:14936") Annotation( "FMA:TA") Annotation( ) "stratum longitudinale tunicae muscularis intestini tenuis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0012402") AnnotationAssertion(rdfs:label "small intestine smooth muscle longitudinal layer") @@ -214975,7 +214674,7 @@ AnnotationAssertion(Annotation( "SCTID:367664002") AnnotationAssertion( "labial vein of face") AnnotationAssertion(Annotation( "OBOL:automatic") "lip vein") -AnnotationAssertion(Annotation( ) "vena labialis") +AnnotationAssertion(Annotation( ) "vena labialis") AnnotationAssertion( "uberon") AnnotationAssertion( "labial vein") AnnotationAssertion( "UBERON:0013136") @@ -215253,7 +214952,7 @@ AnnotationAssertion(Annotation( "Wikipedia:Urethral_groove") "In humans, the urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. It typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week") AnnotationAssertion( "SCTID:361531004") AnnotationAssertion( "Wikipedia:Urethral_groove") -AnnotationAssertion(Annotation( "Wikipedia:Urethral_groove") Annotation( ) "sulcus urethralis primarius") +AnnotationAssertion(Annotation( "Wikipedia:Urethral_groove") Annotation( ) "sulcus urethralis primarius") AnnotationAssertion( "urethral groove") AnnotationAssertion( "urethral sulcus") AnnotationAssertion( "uberon") @@ -215325,7 +215024,7 @@ AnnotationAssertion( "ncithesaurus:Cranial_Cavity") "UMLS:C0230041") AnnotationAssertion( "Wikipedia:Cranial_cavity") AnnotationAssertion( "neuronames:2806") -AnnotationAssertion(Annotation( "FMA:9644") Annotation( "FMA:TA") Annotation( ) "cavitas cranii") +AnnotationAssertion(Annotation( "FMA:9644") Annotation( "FMA:TA") Annotation( ) "cavitas cranii") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Cranial_cavity") "intracranial cavity") AnnotationAssertion(Annotation( "Wikipedia:Cranial_cavity") "intracranial space") @@ -215618,7 +215317,7 @@ AnnotationAssertion( "PBA:128013078") AnnotationAssertion( "lateral geniculate nucleus magnocellular layer") AnnotationAssertion( "magnocellular layer of lateral geniculate nucleus") -AnnotationAssertion(Annotation( "FMA:76989") Annotation( "FMA:TA") Annotation( ) "strata magnocellularia nuclei dorsalis corporis geniculati lateralis") +AnnotationAssertion(Annotation( "FMA:76989") Annotation( "FMA:TA") Annotation( ) "strata magnocellularia nuclei dorsalis corporis geniculati lateralis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0013606") AnnotationAssertion(rdfs:comment "Rods; necessary for the perception of movement, depth, and small differences in brightness[WP]") @@ -215632,7 +215331,7 @@ AnnotationAssertion( "FMA:76992") AnnotationAssertion( "PBA:128013091") AnnotationAssertion( "parvocellular layer of lateral geniculate nucleus") -AnnotationAssertion(Annotation( "FMA:76992") Annotation( "FMA:TA") Annotation( ) "strata parvocellularia nuclei dorsalis corporis geniculati lateralis") +AnnotationAssertion(Annotation( "FMA:76992") Annotation( "FMA:TA") Annotation( ) "strata parvocellularia nuclei dorsalis corporis geniculati lateralis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0013607") AnnotationAssertion(rdfs:comment "Cones; long- and medium-wavelength (\"red\" and \"green\" cones); necessary for the perception of color and form (fine details).[WP]") @@ -215644,7 +215343,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion( "FMA:76988") AnnotationAssertion( "konioocellular layer of lateral geniculate nucleus") -AnnotationAssertion(Annotation( "FMA:76988") Annotation( "FMA:TA") Annotation( ) "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis") +AnnotationAssertion(Annotation( "FMA:76988") Annotation( "FMA:TA") Annotation( ) "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0013615") AnnotationAssertion(rdfs:comment "Short-wavelength \"blue\" cones.[WP]") @@ -215778,7 +215477,7 @@ SubClassOf( ObjectExactCardinalit AnnotationAssertion(Annotation( "OBOL:automatic") "Periosteum that is part of a skull.") AnnotationAssertion( "FMA:76623") -AnnotationAssertion(Annotation( "FMA:76623") Annotation( "FMA:TA") Annotation( ) "periosteum externum cranii") +AnnotationAssertion(Annotation( "FMA:76623") Annotation( "FMA:TA") Annotation( ) "periosteum externum cranii") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0013687") AnnotationAssertion(rdfs:label "pericranium") @@ -215899,7 +215598,6 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (body proper) AnnotationAssertion(Annotation( "AEO:0000103") "The region of the organism associated with the visceral organs.") -AnnotationAssertion( ) AnnotationAssertion(Annotation( "FMA:231424") "Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the vertebral column and ribcage. Examples: There is only one body proper[FMA:231424].") AnnotationAssertion( "AEO:0000103") AnnotationAssertion( "BTO:0001489") @@ -215909,7 +215607,6 @@ AnnotationAssertion( "AEO:0000103") "body") AnnotationAssertion(Annotation( "BTO:0001489") "whole body") AnnotationAssertion( "UBERON:0013702") -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "body proper") SubClassOf(Annotation( "AEO") ) @@ -216002,7 +215699,7 @@ EquivalentClasses( ObjectIntersec # Class: (arterial blood) AnnotationAssertion(Annotation( "OBOL:automatic") "A blood that is part of a artery.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006188") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006188") AnnotationAssertion( "FMA:83066") AnnotationAssertion(Annotation( "FMA:83066") "arterial blood") AnnotationAssertion(Annotation( "FMA:83066") "blood in artery") @@ -216016,7 +215713,7 @@ EquivalentClasses( ObjectIntersec # Class: (venous blood) AnnotationAssertion(Annotation( "OBOL:automatic") "A blood that is part of a vein.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006187") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006187") AnnotationAssertion( "FMA:83067") AnnotationAssertion(Annotation( "FMA:83067") "blood in vein") AnnotationAssertion(Annotation( "FMA:83067") "portion of venous blood") @@ -216342,7 +216039,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "Muscle that is part of the respiratory system.") AnnotationAssertion( "this class may be merged with 'respiratory system muscle'; check intercostals") -AnnotationAssertion( "MESH:D012132") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D012132") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0014398") AnnotationAssertion( ) @@ -216604,12 +216301,12 @@ AnnotationAssertion( "white lamina of cerebellum") AnnotationAssertion(Annotation( "BIRNLEX:1105") Annotation( ) "white laminae of cerebellum") AnnotationAssertion( "uberon") -AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus cinguli") -AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus gyri cingulatus") -AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus gyri cinguli") -AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus of gyrus fornicatus") +AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus cinguli") +AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus gyri cingulatus") +AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus gyri cinguli") +AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus of gyrus fornicatus") AnnotationAssertion(Annotation( "NeuroNames:163") "isthmus of the cingulate gyrus") -AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus-2") +AnnotationAssertion(Annotation( "NeuroNames:163") Annotation( ) "isthmus-2") AnnotationAssertion(Annotation( "BIRNLEX:1105") Annotation( ) "laminae albae of cerebellar cortex") AnnotationAssertion( "UBERON:0014540") AnnotationAssertion(rdfs:label "white matter lamina of cerebellum") @@ -216728,8 +216425,8 @@ AnnotationAssertion(Annotation( "NeuroNames:703") "cranial portion of eleventh cranial nerve") AnnotationAssertion(Annotation( "NeuroNames:703") "internal branch of accessory nerve") AnnotationAssertion(Annotation( "NeuroNames:703") "nerve XI (cranialis)") -AnnotationAssertion(Annotation( "NeuroNames:703") Annotation( ) "pars vagalis of nervus accessorius") -AnnotationAssertion(Annotation( "NeuroNames:703") Annotation( ) "radices craniales nervi accessorii") +AnnotationAssertion(Annotation( "NeuroNames:703") Annotation( ) "pars vagalis of nervus accessorius") +AnnotationAssertion(Annotation( "NeuroNames:703") Annotation( ) "radices craniales nervi accessorii") AnnotationAssertion( "UBERON:0014615") AnnotationAssertion(rdfs:label "accessory nerve root") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -216754,6 +216451,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "OBOL:automatic") "A ventral horn of spinal cord that is part of a cervical spinal cord.") AnnotationAssertion( ) AnnotationAssertion( "BIRNLEX:1680") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D066151") AnnotationAssertion( "SCTID:174363005") AnnotationAssertion(Annotation( "BIRNLEX:1680") "UMLS:C0228615") AnnotationAssertion(Annotation( "BIRNLEX:1680") "UMLS:C1278740") @@ -217011,6 +216709,60 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (crus of diaphragm) + +AnnotationAssertion(Annotation( "PMID:23586979") "The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta.") +AnnotationAssertion( "EHDAA2:0000597") +AnnotationAssertion( "EMAPA:17703") +AnnotationAssertion( "SCTID:244668003") +AnnotationAssertion( "VHOG:0001546") +AnnotationAssertion( "Wikipedia:Crus_of_diaphragm") +AnnotationAssertion(Annotation( "PMID:23586979") "crural diaphragm") +AnnotationAssertion( "uberon") +AnnotationAssertion(Annotation( "Wikipedia:Crus_of_diaphragm") "crura of the diaphragm") +AnnotationAssertion(Annotation( "Wikipedia:Crus_of_diaphragm") "crus of the diaphragm") +AnnotationAssertion(Annotation( ) "diaphragm crura") +AnnotationAssertion(Annotation( "Wikipedia:Crus_of_diaphragm") "diaphragmatic crura") +AnnotationAssertion( "UBERON:0014765") +AnnotationAssertion(rdfs:comment "Classification notes: May be considered an external sphincter[PMID:8224664]") +AnnotationAssertion(rdfs:label "crus of diaphragm") +SubClassOf( ) +SubClassOf(Annotation( "PMID:23586979") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "PMID:23586979") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (right crus of diaphragm) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A crus of diaphragm that is in_the_right_side_of a diaphragm.") +AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) +AnnotationAssertion( "FMA:58286") +AnnotationAssertion( "SCTID:362690009") +AnnotationAssertion(Annotation( "FMA:58286") Annotation( "FMA:TA") Annotation( ) "crus dextrum (Diaphragma)") +AnnotationAssertion(Annotation( "FMA:58286") Annotation( "FMA:TA") Annotation( ) "crus dextrum diaphragmatis") +AnnotationAssertion(Annotation( "FMA:58286") "external sphincter of esophagus") +AnnotationAssertion(Annotation( "FMA:58286") "right crus of diaphragm") +AnnotationAssertion(Annotation( "FMA:58286") "right crus of lumbar part of diaphragm") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0014766") +AnnotationAssertion(rdfs:label "right crus of diaphragm") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (left crus of diaphragm) + +AnnotationAssertion(Annotation( "OBOL:automatic") "A crus of diaphragm that is in_the_left_side_of a diaphragm.") +AnnotationAssertion( "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI) +AnnotationAssertion( "FMA:58287") +AnnotationAssertion( "SCTID:244937004") +AnnotationAssertion(Annotation( "FMA:58287") Annotation( "FMA:TA") Annotation( ) "crus sinistrum (Diaphragma)") +AnnotationAssertion(Annotation( "FMA:58287") Annotation( "FMA:TA") Annotation( ) "crus sinistrum diaphragmatis") +AnnotationAssertion(Annotation( "FMA:58287") "left crus of diaphragm") +AnnotationAssertion(Annotation( "FMA:58287") "left crus of lumbar part of diaphragm") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0014767") +AnnotationAssertion(rdfs:label "left crus of diaphragm") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (palpebral vein) AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "A blood vessel that drains from from an eyelid.") @@ -217018,7 +216770,7 @@ AnnotationAssertion( "SCTID:152208004") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "palpebral veins") -AnnotationAssertion(Annotation( ) "venae palpebrales") +AnnotationAssertion(Annotation( ) "venae palpebrales") AnnotationAssertion( "UBERON:0014769") AnnotationAssertion(rdfs:label "palpebral vein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -217184,6 +216936,7 @@ EquivalentClasses( ObjectIntersec # Class: (skeletal muscle organ, vertebrate) AnnotationAssertion(Annotation( "GOC:dos") "A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles).") +AnnotationAssertion( ) AnnotationAssertion( "skeletal muscle") AnnotationAssertion( "AAO:0011099") AnnotationAssertion( "BTO:0001103") @@ -217206,6 +216959,7 @@ AnnotationAssertion( "ZFA:0005277") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0014892") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "skeletal muscle organ, vertebrate") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) @@ -217840,9 +217594,9 @@ AnnotationAssertion(Annotation( "FMA:55627") AnnotationAssertion( "NCIT:C32346") AnnotationAssertion( "SCTID:28638008") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "cervix dentis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "cervix dentis") AnnotationAssertion(Annotation( "FMA:55627") "cervix of tooth") -AnnotationAssertion(Annotation( "ncithesaurus:Collum_Dentis") Annotation( ) "collumn dentis") +AnnotationAssertion(Annotation( "ncithesaurus:Collum_Dentis") Annotation( ) "collumn dentis") AnnotationAssertion(Annotation( "http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth") "dental neck") AnnotationAssertion(Annotation( "FMA:55627") "tooth neck") AnnotationAssertion( "uberon") @@ -217856,7 +217610,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "AEO:0000093") Annotation( "AEO:JB") Annotation( "FBC:DOS") Annotation( "FBbt:00007278") "An anatomical group whose component structures share a common function.") AnnotationAssertion( "AEO:0000093") -AnnotationAssertion( "FBbt:00007278") +AnnotationAssertion(Annotation( ) "FBbt:00007278") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0015203") AnnotationAssertion(rdfs:label "non-connected functional system") @@ -218075,7 +217829,7 @@ AnnotationAssertion( "MA:0003096") AnnotationAssertion(Annotation( "FMA:14779") "left branch of hepatic artery") AnnotationAssertion(Annotation( "FMA:14779") "left part of hepatic artery proper") -AnnotationAssertion(Annotation( "FMA:14779") Annotation( "FMA:TA") Annotation( ) "ramus sinister (arteria hepatica propria)") +AnnotationAssertion(Annotation( "FMA:14779") Annotation( "FMA:TA") Annotation( ) "ramus sinister (arteria hepatica propria)") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0015481") AnnotationAssertion( ) @@ -218091,7 +217845,7 @@ AnnotationAssertion( "MA:th") "EMAPA:37376") AnnotationAssertion( "FMA:14778") AnnotationAssertion( "MA:0003097") -AnnotationAssertion(Annotation( "FMA:14778") Annotation( "FMA:TA") Annotation( ) "ramus dexter (arteria hepatica propria)") +AnnotationAssertion(Annotation( "FMA:14778") Annotation( "FMA:TA") Annotation( ) "ramus dexter (arteria hepatica propria)") AnnotationAssertion(Annotation( "FMA:14778") "right branch of hepatic artery proper") AnnotationAssertion(Annotation( "FMA:14778") "right part of hepatic artery proper") AnnotationAssertion( "uberon") @@ -218176,7 +217930,7 @@ SubClassOf(Annotation( "FMA AnnotationAssertion(Annotation( "OBOL:automatic") "A smooth muscle tissue that is part of a hypodermis.") AnnotationAssertion( "FMA:77862") AnnotationAssertion(Annotation( "FMA:77862") "muscle layer in fatty layer of subcutaneous tissue") -AnnotationAssertion(Annotation( "FMA:77862") Annotation( "FMA:TA") Annotation( ) "stratum musculosum panniculi adiposi telae subcutaneae") +AnnotationAssertion(Annotation( "FMA:77862") Annotation( "FMA:TA") Annotation( ) "stratum musculosum panniculi adiposi telae subcutaneae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0015783") AnnotationAssertion(rdfs:label "smooth muscle layer in fatty layer of subcutaneous tissue") @@ -218187,7 +217941,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "The portion of the nasal mucosa that is part of the respiratory system.") AnnotationAssertion(Annotation( "Wikipedia:Nasal_cavity") "lined with ciliated pseudostratified columnar epithelium (respiratory epithelium). The respiratory segment has a very vascularized lamina propria allowing the venous plexuses of the conchal mucosa to engorge with blood, restricting airflow and causing air to be directed to the other side of the nose.") AnnotationAssertion( "FMA:77198") -AnnotationAssertion(Annotation( "FMA:77198") Annotation( "FMA:TA") Annotation( ) "pars respiratoria tunicae mucosae nasi") +AnnotationAssertion(Annotation( "FMA:77198") Annotation( "FMA:TA") Annotation( ) "pars respiratoria tunicae mucosae nasi") AnnotationAssertion(Annotation( "FMA:77198") "respiratory zone of nasal mucosa") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0015786") @@ -218483,6 +218237,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "FMA:50060") "Subdivision of thorax which includes all structures from the skin to the costal pleura. Examples: There is only one chest wall.") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37233") AnnotationAssertion( "FMA:50060") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D035441") AnnotationAssertion( "NCIT:C62484") AnnotationAssertion( "SCTID:181608004") AnnotationAssertion( "uberon") @@ -218547,12 +218302,12 @@ AnnotationAssertion( "FMA:15813") AnnotationAssertion( "SCTID:362185005") AnnotationAssertion( "Wikipedia:Fibrous_capsule_of_Glisson") -AnnotationAssertion(Annotation( "Wikipedia:Fibrous_capsule_of_Glisson") Annotation( ) "capsula fibrosa perivascularis") +AnnotationAssertion(Annotation( "Wikipedia:Fibrous_capsule_of_Glisson") Annotation( ) "capsula fibrosa perivascularis") AnnotationAssertion(Annotation( "FMA:15813") "fibrous capsule of liver") AnnotationAssertion(Annotation( "FMA:15813") "glisson's capsule") AnnotationAssertion(Annotation( "FMA:15813") "hepatic capsule") AnnotationAssertion(Annotation( "FMA:TA") "tunica fibrosa (hepar)") -AnnotationAssertion(Annotation( "FMA:15813") Annotation( "FMA:TA") Annotation( ) "tunica fibrosa hepatis") +AnnotationAssertion(Annotation( "FMA:15813") Annotation( "FMA:TA") Annotation( ) "tunica fibrosa hepatis") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Fibrous_capsule_of_Glisson") "fibrous capsule of Glisson") AnnotationAssertion(Annotation( "Wikipedia:Fibrous_capsule_of_Glisson") "liver capsule") @@ -218756,7 +218511,7 @@ AnnotationAssertion(Annotation( "MM") "Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though") AnnotationAssertion( ) AnnotationAssertion(Annotation( "FMA:61824") "frontal region") -AnnotationAssertion(Annotation( "FMA:61824") Annotation( "FMA:TA") Annotation( ) "regio frontalis") +AnnotationAssertion(Annotation( "FMA:61824") Annotation( "FMA:TA") Annotation( ) "regio frontalis") AnnotationAssertion( "BAMS:Frontal_lobe") AnnotationAssertion( "BIRNLEX:928") AnnotationAssertion( "BM:Tel-Cx-FR") @@ -218773,8 +218528,8 @@ AnnotationAssertion( "BIRNLEX:928") Annotation( "ncithesaurus:Frontal_Lobe") "UMLS:C0016733") AnnotationAssertion(Annotation( "BIRNLEX:928") "UMLS:C1268977") AnnotationAssertion(Annotation( "BIRNLEX:928") "neuronames:56") -AnnotationAssertion(Annotation( "NeuroNames:56") Annotation( ) "lobi frontales") -AnnotationAssertion(Annotation( "Wikipedia:Frontal_lobe") Annotation( ) "lobus frontalis") +AnnotationAssertion(Annotation( "NeuroNames:56") Annotation( ) "lobi frontales") +AnnotationAssertion(Annotation( "Wikipedia:Frontal_lobe") Annotation( ) "lobus frontalis") AnnotationAssertion(Annotation( "FMA:61824") "frontal cortex") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0016525") @@ -218800,7 +218555,7 @@ AnnotationAssertion(Annotation( "BTO:0000445") "cerebral lobe") AnnotationAssertion(Annotation( "BIRNLEX:922") "lobe of cerebral cortex") AnnotationAssertion(Annotation( "BIRNLEX:922") "lobe parts of cerebral cortex") -AnnotationAssertion(Annotation( "FMA:77800") Annotation( "FMA:TA") Annotation( ) "lobi cerebri") +AnnotationAssertion(Annotation( "FMA:77800") Annotation( "FMA:TA") Annotation( ) "lobi cerebri") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:68603") "cerebral cortical segment") AnnotationAssertion(Annotation( "BIRNLEX:922") "lobes of the brain") @@ -218853,6 +218608,7 @@ AnnotationAssertion( "EMAPA:35667") AnnotationAssertion( "FMA:242203") AnnotationAssertion( "MA:0000916") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D010296") AnnotationAssertion( "NLX:79282") AnnotationAssertion( "SCTID:369217001") AnnotationAssertion( "neuronames:2473") @@ -218903,6 +218659,7 @@ AnnotationAssertion( "DMBA:16044") AnnotationAssertion( "FMA:242201") AnnotationAssertion( "MA:0000941") +AnnotationAssertion(Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D013702") AnnotationAssertion( "NLX:94939") AnnotationAssertion( "SCTID:362343001") AnnotationAssertion(Annotation( "FMA:242201") "cortex of temporal lobe") @@ -219089,7 +218846,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (shoulder joint) AnnotationAssertion(Annotation( "http://www.innerbody.com/image/skel17.html") "The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints.") -AnnotationAssertion( "MESH:D012785") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D012785") AnnotationAssertion( "SCTID:361835002") AnnotationAssertion( "joint of shoulder region") AnnotationAssertion( "uberon") @@ -219410,7 +219167,7 @@ AnnotationAssertion( "should be all Theria, see https://github.com/obophenotype/mouse-anatomy-ontology/issues/116") ) AnnotationAssertion( "May be homologous with the transverse processes of cervical vertebra") AnnotationAssertion(Annotation( "MA:th") "EMAPA:37825") -AnnotationAssertion( "MESH:D057070") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "MESH:D057070") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0018144") AnnotationAssertion(rdfs:label "cervical rib") @@ -219573,7 +219330,7 @@ AnnotationAssertion( "FMA:18917") AnnotationAssertion( "SCTID:14885008") AnnotationAssertion( "Wikipedia:Internal_pudendal_veins") -AnnotationAssertion(Annotation( "Wikipedia:Internal_pudendal_veins") Annotation( ) "vena pudenda interna") +AnnotationAssertion(Annotation( "Wikipedia:Internal_pudendal_veins") Annotation( ) "vena pudenda interna") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Internal_pudendal_veins") "internal pudic vein") AnnotationAssertion( "UBERON:0018252") @@ -219587,12 +219344,14 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (skeletal musculature) AnnotationAssertion( "Added for consistency with MA EMAPA and EHDAA2. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/104") +AnnotationAssertion( ) AnnotationAssertion( "EHDAA2:0001842") AnnotationAssertion( "EMAPA:35578") AnnotationAssertion( "MA:0000165") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0018254") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "skeletal musculature") SubClassOf( ) SubClassOf(Annotation( "MA") ObjectSomeValuesFrom( )) @@ -219695,7 +219454,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "Wikipedia:Facial_canal") "A Z-shaped canal running through the temporal bone from the internal acoustic meatus to the stylomastoid foramen. It is located within the middle ear region, according to its shape it is divided into three main segments: the labyrinthine, the tympanic, and the mastoidal segment .") AnnotationAssertion( "FMA:54952") AnnotationAssertion( "Wikipedia:Facial_canal") -AnnotationAssertion(Annotation( "FMA:54952") Annotation( "FMA:TA") Annotation( ) "canalis nervi facialis") +AnnotationAssertion(Annotation( "FMA:54952") Annotation( "FMA:TA") Annotation( ) "canalis nervi facialis") AnnotationAssertion(Annotation( "FMA:54952") "facial canal") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:54952") "fallopian canal") @@ -219710,7 +219469,7 @@ AnnotationAssertion(Annotation( "There are usually two Foramina ethmoidalia present on each side in the dog. Sometimes one is situated rostral to the other, but often it is dorsal. They are not homologous with the Foramen ethmoidale anterius and Foramen ethmoidale posterius of man. Therefore they are not listed separately.[NOMINA ANATOMICA VETERINARIA (2005)]") AnnotationAssertion( "Wikipedia:Ethmoidal_foramina") AnnotationAssertion( "ethmoidal foramen") -AnnotationAssertion(Annotation( ) "foramina ethmoidalia") +AnnotationAssertion(Annotation( ) "foramina ethmoidalia") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( ) "ethmoid foramina") AnnotationAssertion(Annotation( ) "ethmoidal foramina") @@ -220117,8 +219876,8 @@ AnnotationAssertion( "FMA:83965") "accessory neural nucleus") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "NeuroNames:2003") "accessory nucleus of anterior column of spinal cord") -AnnotationAssertion(Annotation( "NeuroNames:2003") Annotation( ) "nucleus accessorius columnae anterioris medullae spinalis") -AnnotationAssertion(Annotation( "NeuroNames:2003") Annotation( ) "nucleus nervi accessorii") +AnnotationAssertion(Annotation( "NeuroNames:2003") Annotation( ) "nucleus accessorius columnae anterioris medullae spinalis") +AnnotationAssertion(Annotation( "NeuroNames:2003") Annotation( ) "nucleus nervi accessorii") AnnotationAssertion(Annotation( "NeuroNames:2003") "nucleus of accessory nerve") AnnotationAssertion(Annotation( "NeuroNames:2003") "nucleus of the accessory nerve") AnnotationAssertion(Annotation( "NeuroNames:2003") "nucleus of the spinal accessory nerve") @@ -220907,7 +220666,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "CARO:0020000") -AnnotationAssertion( "FBbt:00007276") +AnnotationAssertion(Annotation( ) "FBbt:00007276") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0034923") AnnotationAssertion( ) @@ -220938,7 +220697,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "FBbt:00100152") +AnnotationAssertion(Annotation( ) "FBbt:00100152") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0034926") AnnotationAssertion( ) @@ -221025,7 +220784,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "http://orcid.org/0000-0002-6601-2165") "Any excreted gas that is produced by the digestive tract.") AnnotationAssertion( "FMA:78440") AnnotationAssertion(Annotation( "FMA:78440") "flatulence") -AnnotationAssertion(Annotation( "Wikipedia:Flatulence") Annotation( ) "flatus") +AnnotationAssertion(Annotation( "Wikipedia:Flatulence") Annotation( ) "flatus") AnnotationAssertion( "intestinal gas") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0034946") @@ -221246,6 +221005,7 @@ EquivalentClasses( ObjectIntersec # Class: (excretory duct) +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006341") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035050") AnnotationAssertion(rdfs:label "excretory duct") @@ -221253,7 +221013,6 @@ SubClassOf( (interlobular duct of salivary gland) -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006341") AnnotationAssertion( "FMA:60053") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035053") @@ -221421,7 +221180,7 @@ AnnotationAssertion( "SCTID:279697005") AnnotationAssertion( "UMLS:C0227961") AnnotationAssertion(Annotation( "FMA:19592") "facies posterior (prostatae)") -AnnotationAssertion(Annotation( "FMA:19592") Annotation( "FMA:TA") Annotation( ) "facies posterior prostatae") +AnnotationAssertion(Annotation( "FMA:19592") Annotation( "FMA:TA") Annotation( ) "facies posterior prostatae") AnnotationAssertion(Annotation( "FMA:19592") "posterior surface of prostate gland") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035165") @@ -221588,7 +221347,7 @@ AnnotationAssertion( "Wikipedia:Mediastinal_pleura") AnnotationAssertion(Annotation( "FMA:9736") "mediastinal part of parietal pleura") AnnotationAssertion(Annotation( "FMA:9736") "pars mediastinalis (pleurae)") -AnnotationAssertion(Annotation( "FMA:9736") Annotation( "FMA:TA") Annotation( ) "pars mediastinalis pleurae parietalis") +AnnotationAssertion(Annotation( "FMA:9736") Annotation( "FMA:TA") Annotation( ) "pars mediastinalis pleurae parietalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035431") AnnotationAssertion(rdfs:label "mediastinal pleura") @@ -221619,7 +221378,7 @@ AnnotationAssertion( "SCTID:279376000") AnnotationAssertion( "UMLS:C0227610") AnnotationAssertion(Annotation( "FMA:15590") "facies posterior (Ren)") -AnnotationAssertion(Annotation( "FMA:15590") Annotation( "FMA:TA") Annotation( ) "facies posterior renis") +AnnotationAssertion(Annotation( "FMA:15590") Annotation( "FMA:TA") Annotation( ) "facies posterior renis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035471") AnnotationAssertion(rdfs:label "posterior surface of kidney") @@ -221664,7 +221423,7 @@ AnnotationAssertion( "UMLS:C0227960") AnnotationAssertion(Annotation( "FMA:19591") "anterior surface of prostate gland") AnnotationAssertion(Annotation( "FMA:19591") "facies anterior (prostatae)") -AnnotationAssertion(Annotation( "FMA:19591") Annotation( "FMA:TA") Annotation( ) "facies anterior prostatae") +AnnotationAssertion(Annotation( "FMA:19591") Annotation( "FMA:TA") Annotation( ) "facies anterior prostatae") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035523") AnnotationAssertion(rdfs:label "anterior surface of prostate") @@ -221879,7 +221638,7 @@ AnnotationAssertion( "SCTID:120612006") AnnotationAssertion( "UMLS:C0229243") AnnotationAssertion( "Wikipedia:Accessory_visual_structures") -AnnotationAssertion(Annotation( "http://medical-dictionary.thefreedictionary.com/ocular+adnexa") Annotation( ) "adnexa oculi") +AnnotationAssertion(Annotation( "http://medical-dictionary.thefreedictionary.com/ocular+adnexa") Annotation( ) "adnexa oculi") AnnotationAssertion( "uberon") AnnotationAssertion( "accessory parts of orbital region") AnnotationAssertion(Annotation( "FMA:76554") Annotation( "Wikipedia:Accessory_visual_structures") "accessory visual structures") @@ -221889,7 +221648,7 @@ AnnotationAssertion(Annotation( "http://medical-dictionary.thefreedictionary.com/ocular+adnexa") Annotation( ) "appendages of the eye") AnnotationAssertion( "eye adnexa") AnnotationAssertion(Annotation( "FMA:76554") "set of accessory visual structures") -AnnotationAssertion(Annotation( "Wikipedia:Accessory_visual_structures") Annotation( ) "structurae oculi accessoriae") +AnnotationAssertion(Annotation( "Wikipedia:Accessory_visual_structures") Annotation( ) "structurae oculi accessoriae") AnnotationAssertion( "UBERON:0035639") AnnotationAssertion(rdfs:label "ocular adnexa") SubClassOf( ) @@ -222063,7 +221822,7 @@ EquivalentClasses( ObjectIntersec AnnotationAssertion(Annotation( "UBERON:cjm") "The part of the ventral body cavity that is within the abdominal segment of the trunk, which encompasses the abdomen proper plus pelvic cavity.") AnnotationAssertion( "FMA:12267") AnnotationAssertion( "Wikipedia:Abdominopelvic_cavity") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "cavitas abdominis et pelvis") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "cavitas abdominis et pelvis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0035819") AnnotationAssertion(rdfs:label "abdominopelvic cavity") @@ -222135,6 +221894,21 @@ AnnotationAssertion(rdfs:label " EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +# Class: (costal diaphragm) + +AnnotationAssertion(Annotation( "PMID:23586979") "The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon.") +AnnotationAssertion( "FMA:58277") +AnnotationAssertion( "SCTID:368048007") +AnnotationAssertion(Annotation( "FMA:58277") "costal part of diaphragm") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "pars costalis diaphragmatis") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0035831") +AnnotationAssertion(rdfs:label "costal diaphragm") +SubClassOf( ) +SubClassOf(Annotation( "PMID:23586979") ObjectSomeValuesFrom( )) +SubClassOf(Annotation( "PMID:23586979") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (sulcus of parietal lobe) AnnotationAssertion( "HBA:9370") @@ -222294,7 +222068,7 @@ EquivalentClasses( ObjectIntersec # Class: (vaginal fluid) AnnotationAssertion(Annotation( "http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/") "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands.") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0003084") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0003084") AnnotationAssertion( "uberon") AnnotationAssertion( "vaginal discharge") AnnotationAssertion( "vaginal secretion") @@ -222365,7 +222139,7 @@ AnnotationAssertion( "SCTID:280243001") AnnotationAssertion( "Wikipedia:Zygomaticotemporal_nerve") AnnotationAssertion(Annotation( "FMA:52972") "ramus zygomaticotemporalis (Nervus zygomaticus)") -AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "ramus zygomaticotemporalis nervus zygomatici") +AnnotationAssertion(Annotation( "FMA:TA") Annotation( ) "ramus zygomaticotemporalis nervus zygomatici") AnnotationAssertion(Annotation( "FMA:52972") "zygomaticotemporal branch of zygomatic nerve") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "Wikipedia:Zygomaticotemporal_nerve") "zygomaticotemporal") @@ -222473,11 +222247,13 @@ EquivalentClasses( ObjectIntersec # Class: (renal pelvis/ureter) AnnotationAssertion(Annotation( "NCIT:C54419") "The upper tract of the renal system. The renal pelvis is the large cavity in the middle of each kidney. Urine drains from each kidney through a long tube called the ureter, into the bladder, where it is stored until it is passed from the body through the urethra.") +AnnotationAssertion( ) AnnotationAssertion( "NCIT:C54419") AnnotationAssertion( "renal pelvis and ureter") AnnotationAssertion( "renal pelvis plus ureter") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0036295") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "renal pelvis/ureter") SubClassOf( ) SubClassOf(Annotation( "NCIT") ObjectSomeValuesFrom( )) @@ -222872,7 +222648,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (urethral artery) AnnotationAssertion( "FMA:20903") -AnnotationAssertion(Annotation( "A12.2.15.042") Annotation( ) "arteria urethralis") +AnnotationAssertion(Annotation( "A12.2.15.042") Annotation( ) "arteria urethralis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:0039355") AnnotationAssertion(rdfs:label "urethral artery") @@ -223418,7 +223194,7 @@ SubClassOf( "FMA:23356") AnnotationAssertion( "NCIT:C33164") AnnotationAssertion(Annotation( "FMA:23356") "collum anatomicum (Humerus)") -AnnotationAssertion(Annotation( "FMA:23356") Annotation( "FMA:TA") Annotation( ) "collum anatomicum humeri") +AnnotationAssertion(Annotation( "FMA:23356") Annotation( "FMA:TA") Annotation( ) "collum anatomicum humeri") AnnotationAssertion( "humeral neck") AnnotationAssertion( "uberon") AnnotationAssertion(Annotation( "FMA:23356") "anatomic neck of humerus") @@ -223544,7 +223320,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "doi:10.1016/B978-0-12-385026-3.00024-3") "One of the main divisions of the whole organism of arthropods formed from groups of segments.") AnnotationAssertion( ) -AnnotationAssertion( "FBbt:00000002") +AnnotationAssertion(Annotation( ) "FBbt:00000002") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6000002") AnnotationAssertion(rdfs:comment "Strictly speaking the term \"tagma\" cam be used for any metameric organism, however we follow the common usage which is to restrict the term to arthropods.") @@ -223555,7 +223331,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (panarthropod head) -AnnotationAssertion( "FBbt:00000004") +AnnotationAssertion(Annotation( ) "FBbt:00000004") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6000004") AnnotationAssertion(rdfs:label "panarthropod head") @@ -223564,7 +223340,7 @@ EquivalentClasses( ObjectIntersec # Class: (embryonic tagma) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any tagma (UBERON:6000002) that is part of some embryo (UBERON:6000052).") -AnnotationAssertion( "FBbt:00000137") +AnnotationAssertion(Annotation( ) "FBbt:00000137") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6000137") AnnotationAssertion(rdfs:label "embryonic tagma") @@ -223575,7 +223351,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (insect larval tagma) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any tagma (UBERON:6000002) that is part of some larva (UBERON:6001727).") -AnnotationAssertion( "FBbt:00001728") +AnnotationAssertion(Annotation( ) "FBbt:00001728") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6001728") AnnotationAssertion(rdfs:label "insect larval tagma") @@ -223586,7 +223362,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (insect larval head) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any head that is part of some larva.") -AnnotationAssertion( "FBbt:00001730") +AnnotationAssertion(Annotation( ) "FBbt:00001730") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6001730") AnnotationAssertion(rdfs:label "insect larval head") @@ -223595,7 +223371,7 @@ EquivalentClasses( ObjectIntersec # Class: (insect larval sense organ) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any sense organ that is part of some larva.") -AnnotationAssertion( "FBbt:00002639") +AnnotationAssertion(Annotation( ) "FBbt:00002639") AnnotationAssertion( "larval sense organ") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6002639") @@ -223605,7 +223381,7 @@ EquivalentClasses( ObjectIntersec # Class: (insect adult tagma) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any tagma (UBERON:6000002) that is part of some adult (UBERON:6003004).") -AnnotationAssertion( "FBbt:00003005") +AnnotationAssertion(Annotation( ) "FBbt:00003005") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6003005") AnnotationAssertion(rdfs:label "insect adult tagma") @@ -223616,7 +223392,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (insect adult head) AnnotationAssertion(Annotation( "FBC:SPR") "Head of the adult organism.") -AnnotationAssertion( "FBbt:00003007") +AnnotationAssertion(Annotation( ) "FBbt:00003007") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6003007") AnnotationAssertion(rdfs:label "insect adult head") @@ -223626,7 +223402,7 @@ SubClassOf( (insect embryonic/larval sensillum) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727).") -AnnotationAssertion( "FBbt:00007240") +AnnotationAssertion(Annotation( ) "FBbt:00007240") AnnotationAssertion( "larval sensillum") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6007240") @@ -223639,7 +223415,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (insect embryonic/larval head sensillum) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730).") -AnnotationAssertion( "FBbt:00007242") +AnnotationAssertion(Annotation( ) "FBbt:00007242") AnnotationAssertion( "larval head sensillum") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6007242") @@ -223653,7 +223429,7 @@ SubClassOf( ObjectSomeValuesFrom( # Class: (insect embryonic/larval head sense organ) AnnotationAssertion(Annotation( "FBC:auto_generated_definition") "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730).") -AnnotationAssertion( "FBbt:00007280") +AnnotationAssertion(Annotation( ) "FBbt:00007280") AnnotationAssertion( "larval head sense organ") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:6007280") @@ -223890,7 +223666,7 @@ SubClassOf( ObjectSomeValuesFrom( AnnotationAssertion(Annotation( "https://medical-dictionary.thefreedictionary.com/serosa+of+liver") Annotation( "https://orcid.org/0000-0002-0449-2730") "Hepatic serous coat; peritoneal covering of the liver, enclosing almost all except for a triangular area on its posterior surface (the 'bare area of the liver') and a smaller area where the liver and gallbladder are in direct contact.") AnnotationAssertion( ) AnnotationAssertion(Annotation( "FMA:15811") "serosa of liver") -AnnotationAssertion(Annotation( "LATIN") Annotation( "https://medical-dictionary.thefreedictionary.com/serosa+of+liver") "tunica serosa hepatis") +AnnotationAssertion(Annotation( "https://medical-dictionary.thefreedictionary.com/serosa+of+liver") Annotation( ) "tunica serosa hepatis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8400021") AnnotationAssertion(rdfs:label "liver serosa") @@ -223933,7 +223709,7 @@ AnnotationAssertion( "duodeno-jejunal flexure") AnnotationAssertion( "duodenojejunal flexure") AnnotationAssertion( "duodenojejunal junction") -AnnotationAssertion(Annotation( "Wikipedia:Duodenojejunal_flexure") Annotation( ) "flexura duodenojejunalis") +AnnotationAssertion(Annotation( "Wikipedia:Duodenojejunal_flexure") Annotation( ) "flexura duodenojejunalis") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8410000") AnnotationAssertion( ) @@ -224659,7 +224435,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "http://orcid.org/0000-0002-6095-8718") AnnotationAssertion( "2022-05-25T18:21:29Z") -AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-4423-4370") "BTO:0006338") +AnnotationAssertion(Annotation( ) Annotation( ) Annotation( "https://github.com/biopragmatics/biomappings") "BTO:0006338") AnnotationAssertion( "uberon") AnnotationAssertion( "UBERON:8450002") AnnotationAssertion( ) @@ -225001,6 +224777,19 @@ AnnotationAssertion( "chorionic plate blood vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (placental villous stroma) + +AnnotationAssertion(Annotation( "PMID:31512233") "A stroma that is part of a chorionic villus (placental villus). A placental villous stroma supports the fetal capillaries and villous trophoblast.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2023-07-04T10:46:17Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:12624135") "chorionic villous stroma") +AnnotationAssertion( "uberon") +AnnotationAssertion(Annotation( "PMID:12624135") Annotation( ) "CVS") +AnnotationAssertion( "UBERON:8600023") +AnnotationAssertion(rdfs:label "placental villous stroma") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (pulmonary venule) AnnotationAssertion(Annotation( "PMID:22283705") Annotation( "PMID:30247823") "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that runs in the pulmonary interlobular septa.") @@ -225014,6 +224803,66 @@ SubClassOf( ObjectSomeValuesFrom( SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (jejunum lamina propria) + +AnnotationAssertion(Annotation( "PMID:9394954") "A lamina propria that is part of a jejunum.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2024-01-09T16:36:35Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:1556433") "jejunal lamina propria") +AnnotationAssertion(Annotation( "PMID:22763879") "lamina propria of jejunum") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600034") +AnnotationAssertion(rdfs:label "jejunum lamina propria") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ileum lamina propria) + +AnnotationAssertion(Annotation( "PMID:29316348") "A lamina propria that is part of an ileum.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2024-01-09T16:48:17Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:37467267") "ileal lamina propria") +AnnotationAssertion(Annotation( "PMID:36067905") "lamina propria of ileum") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600035") +AnnotationAssertion(rdfs:label "ileum lamina propria") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (placental disc) + +AnnotationAssertion(Annotation( "PMID:35496035") "A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-01-16T17:50:20Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:30133439") "placental disk") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600038") +AnnotationAssertion(rdfs:label "placental disc") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (chorionic villous mesenchyme) + +AnnotationAssertion(Annotation( "doi:10.1007/978-3-030-84725-8") "A mesenchyme that is part of a chorionic villus.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-01-16T18:13:12Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600039") +AnnotationAssertion(rdfs:label "chorionic villous mesenchyme") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (endometrial lymphatic vessel) + +AnnotationAssertion(Annotation( "PMID:23054374") "A lymphatic vessel that is part of an endometrium.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-01-16T18:18:36Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600042") +AnnotationAssertion(rdfs:label "endometrial lymphatic vessel") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + ############################ # Named Individuals @@ -225146,6 +224995,23 @@ EquivalentClasses(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectIntersectionOf( ObjectExactCardinality(2 ))) EquivalentClasses(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectIntersectionOf( ObjectExactCardinality(1 ))) EquivalentClasses(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectIntersectionOf( ObjectMinCardinality(2 ))) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "hagfish have median nostril") ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) @@ -225314,6 +225180,23 @@ DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain( ) ) diff --git a/src/ontology/imports/uberon_terms.txt b/src/ontology/imports/uberon_terms.txt index 55a562e27..3e366d6ac 100644 --- a/src/ontology/imports/uberon_terms.txt +++ b/src/ontology/imports/uberon_terms.txt @@ -48,3 +48,4 @@ UBERON:0001058 UBERON:0001038 UBERON:0000371 UBERON:0008198 +UBERON:0004025 \ No newline at end of file