From 6330fa035a09b6ccc0757cbc1601bd32885b3628 Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Thu, 19 Oct 2023 11:58:25 +0100 Subject: [PATCH] remove oort step in the release pipeline (#2204) Co-authored-by: Anita Caron --- src/ontology/cl.Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/ontology/cl.Makefile b/src/ontology/cl.Makefile index fb28d0ea1..83b7c6f51 100644 --- a/src/ontology/cl.Makefile +++ b/src/ontology/cl.Makefile @@ -50,7 +50,9 @@ tmp/source-merged.obo: $(SRC) tmp/asserted-subclass-of-axioms.obo config/remove_ oort: tmp/source-merged.obo ontology-release-runner --reasoner elk tmp/source-merged.obo --no-subsets --skip-ontology-checks --allow-equivalent-pairs --simple --relaxed --asserted --allow-overwrite --outdir oort -test: oort +# With the new OWLAPI 4.5.26, which allows arbitrary annotation properties in the OBO parser and oort using a previous OWLAPI version, +# we are having conflicts when converting it. Also, the oort step is not used in any release artefact. +#test: oort tmp/$(ONT)-stripped.owl: oort $(ROBOT) filter --input oort/$(ONT)-simple.owl --term-file tmp/cl_terms.txt --trim false \