From 350f08e3a089b558e83d72288b8465ffa4cb79e9 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Tue, 26 Sep 2023 13:40:24 +0100 Subject: [PATCH 1/2] Addresses #2140 NTR TCR+ macrophage --- src/ontology/cl-edit.owl | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index bd4a03f3a..bc85916d7 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2936,6 +2936,7 @@ Declaration(Class(obo:CL_4030054)) Declaration(Class(obo:CL_4030055)) Declaration(Class(obo:CL_4030056)) Declaration(Class(obo:CL_4030057)) +Declaration(Class(obo:CL_4030058)) Declaration(Class(obo:CL_4032000)) Declaration(Class(obo:CL_4032001)) Declaration(Class(obo:CL_4033000)) @@ -31021,6 +31022,17 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.cell.2018.07.02 AnnotationAssertion(rdfs:label obo:CL_4030057 "eccentric medium spiny neuron") SubClassOf(obo:CL_4030057 obo:CL_1001474) +# Class: obo:CL_4030058 (TCR-positive macrophage) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:26074923") obo:IAO_0000115 obo:CL_4030058 "A macrophage that expresses the T cell receptor complex at the cell surface.") +AnnotationAssertion( obo:CL_4030058 ) +AnnotationAssertion( obo:CL_4030058 "2023-09-26T12:27:14Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:26074923") oboInOwl:hasExactSynonym obo:CL_4030058 "T cell receptor positive macrophage") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:26074923") oboInOwl:hasExactSynonym obo:CL_4030058 "TCR+ macrophage") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37500727") oboInOwl:hasRelatedSynonym obo:CL_4030058 "TCR.macs") +AnnotationAssertion(rdfs:label obo:CL_4030058 "TCR-positive macrophage") +EquivalentClasses(obo:CL_4030058 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042101))) + # Class: obo:CL_4032000 (club-like cell of the urethral epithelium) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875") Annotation(oboInOwl:hasDbXref "PMID:32497356") obo:IAO_0000115 obo:CL_4032000 "An epithelial cell of the urethra that has an expression profile similar to lung club cells. Club-like cells of the urethra epithelium are similar to lung club cells in their expression of SCGB1A1 and in their enrichment of immunomodulatory programs.") From 7c1432ee3aac4d6f9f10b8db94d339899c887a48 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Tue, 26 Sep 2023 13:41:34 +0100 Subject: [PATCH 2/2] Update cl-edit.owl add abbreviation syn type prop --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index bc85916d7..6ea0a3ed9 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31029,7 +31029,7 @@ AnnotationAssertion( obo:CL_4030058 obo:CL_4030058 "2023-09-26T12:27:14Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:26074923") oboInOwl:hasExactSynonym obo:CL_4030058 "T cell receptor positive macrophage") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:26074923") oboInOwl:hasExactSynonym obo:CL_4030058 "TCR+ macrophage") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37500727") oboInOwl:hasRelatedSynonym obo:CL_4030058 "TCR.macs") +AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Annotation(oboInOwl:hasDbXref "PMID:37500727") oboInOwl:hasRelatedSynonym obo:CL_4030058 "TCR.macs") AnnotationAssertion(rdfs:label obo:CL_4030058 "TCR-positive macrophage") EquivalentClasses(obo:CL_4030058 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042101)))