From cc63f5dd3307fdf5f682fcc97fd17b5cb25cab32 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Thu, 23 Nov 2023 10:35:38 +0000 Subject: [PATCH] Addresses #2202 NTR 'L6 IT Car3 glutamatergic neuron' (#2234) * Addresses #2202 NTR L6 IT Car3 neuron * Update cl-edit.owl revise label, add synonym * Update cl-edit.owl add synonyms --- src/ontology/cl-edit.owl | 15 +++++++++++++++ src/ontology/imports/pr_terms.txt | 3 ++- 2 files changed, 17 insertions(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index d1bf3287e..a56732396 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2947,6 +2947,7 @@ Declaration(Class(obo:CL_4030064)) Declaration(Class(obo:CL_4030065)) Declaration(Class(obo:CL_4030066)) Declaration(Class(obo:CL_4030067)) +Declaration(Class(obo:CL_4030068)) Declaration(Class(obo:CL_4032000)) Declaration(Class(obo:CL_4032001)) Declaration(Class(obo:CL_4033000)) @@ -3057,6 +3058,7 @@ Declaration(Class(obo:PR_000001244)) Declaration(Class(obo:PR_000002030)) Declaration(Class(obo:PR_000002123)) Declaration(Class(obo:PR_000003264)) +Declaration(Class(obo:PR_000004919)) Declaration(Class(obo:PR_000005444)) Declaration(Class(obo:PR_000005460)) Declaration(Class(obo:PR_000007204)) @@ -31121,6 +31123,19 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(ob AnnotationAssertion(rdfs:label obo:CL_4030067 "L5/6 near-projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030067 ObjectIntersectionOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440002))) +# Class: obo:CL_4030068 (L6 intratelencephalic projecting Car3 glutamatergic neuron) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.cell.2021.04.021") Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.06.515349") Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") obo:IAO_0000115 obo:CL_4030068 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 6 that expresses Car3.") +AnnotationAssertion( obo:CL_4030068 ) +AnnotationAssertion( obo:CL_4030068 "2023-11-23T09:16:14Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasExactSynonym obo:CL_4030068 "L6 IT Car3 glutamatergic neuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.06.515349") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6 IT Car3") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.06.515349") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6 IT Car3 neuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6-IT-Car3") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6-IT-Car3 cell") +AnnotationAssertion(rdfs:label obo:CL_4030068 "L6 intratelencephalic projecting Car3 glutamatergic neuron") +EquivalentClasses(obo:CL_4030068 ObjectIntersectionOf(obo:CL_4030065 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000004919))) + # Class: obo:CL_4032000 (club-like cell of the urethral epithelium) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875") Annotation(oboInOwl:hasDbXref "PMID:32497356") obo:IAO_0000115 obo:CL_4032000 "An epithelial cell of the urethra that has an expression profile similar to lung club cells. Club-like cells of the urethra epithelium are similar to lung club cells in their expression of SCGB1A1 and in their enrichment of immunomodulatory programs.") diff --git a/src/ontology/imports/pr_terms.txt b/src/ontology/imports/pr_terms.txt index 73dca7d22..7084b4f38 100644 --- a/src/ontology/imports/pr_terms.txt +++ b/src/ontology/imports/pr_terms.txt @@ -37,4 +37,5 @@ PR:P60041 PR:Q9D387 PR:Q9Z0F7 PR:000001666 -PR:000007204 \ No newline at end of file +PR:000007204 +PR:000004919 \ No newline at end of file