diff --git a/cl-base.json b/cl-base.json index dbb943dfa..b231bb304 100644 --- a/cl-base.json +++ b/cl-base.json @@ -33805,6 +33805,78 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009029", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000077" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009030", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_1001516" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009031", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000084" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009032", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000236" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009033", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000786" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009034", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000451" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_0010001", "genusIds": [ @@ -99312,6 +99384,240 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009029", + "lbl": "mesothelial cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A mesothelial cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix mesothelial cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009030", + "lbl": "enteroendocrine cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "An intestinal enteroendocrine cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix enteroendocrine cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009031", + "lbl": "T cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A T cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "T cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "T cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix T cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009032", + "lbl": "B cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A B cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "B cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "B cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix B cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009033", + "lbl": "plasma cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A plasma cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix plasma cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009034", + "lbl": "dendritic cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A dendritic cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix dendritic cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010000", "lbl": "keratinized cell of hair follicle", @@ -113764,7 +114070,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023042", - "lbl": "L6 corticothalamic-projecting projecting glutamatergic cortical neuron", + "lbl": "L6 corticothalamic-projecting glutamatergic cortical neuron", "meta": { "basicPropertyValues": [ { @@ -113828,7 +114134,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023044", - "lbl": "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -113859,7 +114165,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023045", - "lbl": "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -114104,7 +114410,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023053", - "lbl": "spinal interneuron syanpsing Betz cell", + "lbl": "spinal interneuron synapsing Betz cell", "meta": { "basicPropertyValues": [ { diff --git a/cl-base.obo b/cl-base.obo index ed2f8458b..64a2d2a89 100644 --- a/cl-base.obo +++ b/cl-base.obo @@ -22027,6 +22027,78 @@ intersection_of: CL:0002250 ! intestinal crypt stem cell intersection_of: BFO:0000050 UBERON:0013486 created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009029 +name: mesothelial cell of appendix +def: "A mesothelial cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix mesothelial cell" EXACT [] +synonym: "mesothelial cell of appendix vermiformis" EXACT [] +synonym: "mesothelial cell of vermiform appendix" EXACT [] +intersection_of: CL:0000077 ! mesothelial cell +intersection_of: BFO:0000050 UBERON:0001154 +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009030 +name: enteroendocrine cell of appendix +def: "An intestinal enteroendocrine cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix enteroendocrine cell" EXACT [] +synonym: "enteroendocrine cell of appendix vermiformis" EXACT [] +synonym: "enteroendocrine cell of vermiform appendix" EXACT [] +intersection_of: CL:1001516 ! intestinal enteroendocrine cell +intersection_of: BFO:0000050 UBERON:0001154 +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009031 +name: T cell of appendix +def: "A T cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix T cell" EXACT [] +synonym: "T cell of appendix vermiformis" EXACT [] +synonym: "T cell of vermiform appendix" EXACT [] +intersection_of: CL:0000084 ! T cell +intersection_of: BFO:0000050 UBERON:0001154 +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009032 +name: B cell of appendix +def: "A B cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix B cell" EXACT [] +synonym: "B cell of appendix vermiformis" EXACT [] +synonym: "B cell of vermiform appendix" EXACT [] +intersection_of: CL:0000236 ! B cell +intersection_of: BFO:0000050 UBERON:0001154 +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009033 +name: plasma cell of appendix +def: "A plasma cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix plasma cell" EXACT [] +synonym: "plasma cell of appendix vermiformis" EXACT [] +synonym: "plasma cell of vermiform appendix" EXACT [] +intersection_of: CL:0000786 ! plasma cell +intersection_of: BFO:0000050 UBERON:0001154 +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009034 +name: dendritic cell of appendix +def: "A dendritic cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix dendritic cell" EXACT [] +synonym: "dendritic cell of appendix vermiformis" EXACT [] +synonym: "dendritic cell of vermiform appendix" EXACT [] +intersection_of: CL:0000451 ! dendritic cell +intersection_of: BFO:0000050 UBERON:0001154 +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -27874,7 +27946,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023042 -name: L6 corticothalamic-projecting projecting glutamatergic cortical neuron +name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A corticothalamic-projecting neuron with a soma found in cortical layer 6." [DOI:10.1101/2020.10.19.343129] subset: BDS_subset synonym: "L6 CT" EXACT [] @@ -27896,7 +27968,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023044 -name: non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "non-MY ET MOp (Mus)" EXACT [] @@ -27907,7 +27979,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023045 -name: medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "MY ET MOp (Mus)" EXACT [] @@ -27998,7 +28070,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023053 -name: spinal interneuron syanpsing Betz cell +name: spinal interneuron synapsing Betz cell def: "A Betz cell that syanpses with spinal interneurons." [DOI:10.1101/2020.03.31.016972, PMID:18558853] is_a: CL:0008049 ! Betz cell relationship: RO:0002120 CL:0005000 ! spinal cord interneuron @@ -28020,7 +28092,7 @@ name: corticothalamic VAL/VM projecting glutamatergic neuron of the primary moto def: "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index." [PMID:20556241, PMID:9236245] subset: BDS_subset synonym: "CT VAL/VM MOp (Mus)" EXACT [] -is_a: CL:4023042 ! L6 corticothalamic-projecting projecting glutamatergic cortical neuron +is_a: CL:4023042 ! L6 corticothalamic-projecting glutamatergic cortical neuron relationship: RO:0000053 PATO:0070019 relationship: RO:0002100 UBERON:0001384 relationship: RO:0002162 NCBITaxon:10090 diff --git a/cl-base.owl b/cl-base.owl index 93fa8ce38..38edc518b 100644 --- a/cl-base.owl +++ b/cl-base.owl @@ -63634,6 +63634,192 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + + + + A mesothelial cell that is located in a vermiform appendix. + + appendix mesothelial cell + mesothelial cell of appendix vermiformis + mesothelial cell of vermiform appendix + + mesothelial cell of appendix + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + + appendix enteroendocrine cell + enteroendocrine cell of appendix vermiformis + enteroendocrine cell of vermiform appendix + + enteroendocrine cell of appendix + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A T cell that is located in a vermiform appendix. + + T cell of appendix vermiformis + T cell of vermiform appendix + appendix T cell + + T cell of appendix + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A B cell that is located in a vermiform appendix. + + B cell of appendix vermiformis + B cell of vermiform appendix + appendix B cell + + B cell of appendix + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A plasma cell that is located in a vermiform appendix. + + appendix plasma cell + plasma cell of appendix vermiformis + plasma cell of vermiform appendix + + plasma cell of appendix + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A dendritic cell that is located in a vermiform appendix. + + appendix dendritic cell + dendritic cell of appendix vermiformis + dendritic cell of vermiform appendix + + dendritic cell of appendix + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + @@ -82394,7 +82580,7 @@ plexiform layer using GABA. L6 CT - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -82458,7 +82644,7 @@ plexiform layer using GABA. non-MY ET MOp (Mus) - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -82497,7 +82683,7 @@ plexiform layer using GABA. MY ET MOp (Mus) - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -82747,7 +82933,7 @@ plexiform layer using GABA. - spinal interneuron syanpsing Betz cell + spinal interneuron synapsing Betz cell diff --git a/cl-basic.json b/cl-basic.json index fa313ab73..238dcc181 100644 --- a/cl-basic.json +++ b/cl-basic.json @@ -2028,6 +2028,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002420" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000084", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009031" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000085", "pred": "is_a", @@ -4723,6 +4728,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001201" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000236", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009032" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000237", "pred": "is_a", @@ -5793,6 +5803,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001056" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000451", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009034" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000451", "pred": "is_a", @@ -8578,6 +8593,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000975" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000786", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009033" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000787", "pred": "is_a", @@ -15563,6 +15583,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0009025", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0009028", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -16428,6 +16453,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1000405", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1000405", "pred": "is_a", @@ -17593,6 +17623,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002680" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001516", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001567", "pred": "is_a", @@ -17618,6 +17653,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002624" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001585", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001585", "pred": "is_a", @@ -78344,6 +78384,240 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009029", + "lbl": "mesothelial cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A mesothelial cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix mesothelial cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009030", + "lbl": "enteroendocrine cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "An intestinal enteroendocrine cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix enteroendocrine cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009031", + "lbl": "T cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A T cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "T cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "T cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix T cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009032", + "lbl": "B cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A B cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "B cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "B cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix B cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009033", + "lbl": "plasma cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A plasma cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix plasma cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009034", + "lbl": "dendritic cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A dendritic cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix dendritic cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010000", "lbl": "keratinized cell of hair follicle", @@ -92795,7 +93069,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023042", - "lbl": "L6 corticothalamic-projecting projecting glutamatergic cortical neuron", + "lbl": "L6 corticothalamic-projecting glutamatergic cortical neuron", "meta": { "basicPropertyValues": [ { @@ -92859,7 +93133,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023044", - "lbl": "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -92890,7 +93164,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023045", - "lbl": "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -93135,7 +93409,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023053", - "lbl": "spinal interneuron syanpsing Betz cell", + "lbl": "spinal interneuron synapsing Betz cell", "meta": { "basicPropertyValues": [ { diff --git a/cl-basic.obo b/cl-basic.obo index a5c5f63d3..3589b2967 100644 --- a/cl-basic.obo +++ b/cl-basic.obo @@ -18881,6 +18881,74 @@ is_a: CL:0009016 ! intestinal crypt stem cell of large intestine is_a: CL:1000405 ! epithelial cell of appendix created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009029 +name: mesothelial cell of appendix +def: "A mesothelial cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix mesothelial cell" EXACT [] +synonym: "mesothelial cell of appendix vermiformis" EXACT [] +synonym: "mesothelial cell of vermiform appendix" EXACT [] +is_a: CL:0009025 ! mesothelial cell of large intestine +is_a: CL:1000405 ! epithelial cell of appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009030 +name: enteroendocrine cell of appendix +def: "An intestinal enteroendocrine cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix enteroendocrine cell" EXACT [] +synonym: "enteroendocrine cell of appendix vermiformis" EXACT [] +synonym: "enteroendocrine cell of vermiform appendix" EXACT [] +is_a: CL:1001516 ! intestinal enteroendocrine cell +is_a: CL:1001585 ! appendix glandular cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009031 +name: T cell of appendix +def: "A T cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix T cell" EXACT [] +synonym: "T cell of appendix vermiformis" EXACT [] +synonym: "T cell of vermiform appendix" EXACT [] +is_a: CL:0000084 ! T cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009032 +name: B cell of appendix +def: "A B cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix B cell" EXACT [] +synonym: "B cell of appendix vermiformis" EXACT [] +synonym: "B cell of vermiform appendix" EXACT [] +is_a: CL:0000236 ! B cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009033 +name: plasma cell of appendix +def: "A plasma cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix plasma cell" EXACT [] +synonym: "plasma cell of appendix vermiformis" EXACT [] +synonym: "plasma cell of vermiform appendix" EXACT [] +is_a: CL:0000786 ! plasma cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009034 +name: dendritic cell of appendix +def: "A dendritic cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix dendritic cell" EXACT [] +synonym: "dendritic cell of appendix vermiformis" EXACT [] +synonym: "dendritic cell of vermiform appendix" EXACT [] +is_a: CL:0000451 ! dendritic cell +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -23954,7 +24022,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023042 -name: L6 corticothalamic-projecting projecting glutamatergic cortical neuron +name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A corticothalamic-projecting neuron with a soma found in cortical layer 6." [DOI:10.1101/2020.10.19.343129] subset: BDS_subset synonym: "L6 CT" EXACT [] @@ -23973,7 +24041,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023044 -name: non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "non-MY ET MOp (Mus)" EXACT [] @@ -23982,7 +24050,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023045 -name: medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "MY ET MOp (Mus)" EXACT [] @@ -24057,7 +24125,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023053 -name: spinal interneuron syanpsing Betz cell +name: spinal interneuron synapsing Betz cell def: "A Betz cell that syanpses with spinal interneurons." [DOI:10.1101/2020.03.31.016972, PMID:18558853] is_a: CL:0008049 ! Betz cell property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-7258-9596 @@ -24078,7 +24146,7 @@ name: corticothalamic VAL/VM projecting glutamatergic neuron of the primary moto def: "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index." [PMID:20556241, PMID:9236245] subset: BDS_subset synonym: "CT VAL/VM MOp (Mus)" EXACT [] -is_a: CL:4023042 ! L6 corticothalamic-projecting projecting glutamatergic cortical neuron +is_a: CL:4023042 ! L6 corticothalamic-projecting glutamatergic cortical neuron property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-7258-9596 [Term] diff --git a/cl-basic.owl b/cl-basic.owl index 7cf09102c..b98a5d8e7 100644 --- a/cl-basic.owl +++ b/cl-basic.owl @@ -43328,6 +43328,140 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix mesothelial cell + mesothelial cell of appendix vermiformis + mesothelial cell of vermiform appendix + CL:0009029 + + mesothelial cell of appendix + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix enteroendocrine cell + enteroendocrine cell of appendix vermiformis + enteroendocrine cell of vermiform appendix + CL:0009030 + + enteroendocrine cell of appendix + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + T cell of appendix vermiformis + T cell of vermiform appendix + appendix T cell + CL:0009031 + + T cell of appendix + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + B cell of appendix vermiformis + B cell of vermiform appendix + appendix B cell + CL:0009032 + + B cell of appendix + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix plasma cell + plasma cell of appendix vermiformis + plasma cell of vermiform appendix + CL:0009033 + + plasma cell of appendix + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix dendritic cell + dendritic cell of appendix vermiformis + dendritic cell of vermiform appendix + CL:0009034 + + dendritic cell of appendix + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + @@ -54935,7 +55069,7 @@ plexiform layer using GABA. L6 CT CL:4023042 - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -54977,7 +55111,7 @@ plexiform layer using GABA. non-MY ET MOp (Mus) CL:4023044 - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -54999,7 +55133,7 @@ plexiform layer using GABA. MY ET MOp (Mus) CL:4023045 - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -55173,7 +55307,7 @@ plexiform layer using GABA. CL:4023053 - spinal interneuron syanpsing Betz cell + spinal interneuron synapsing Betz cell @@ -55865,9 +55999,9 @@ plexiform layer using GABA. + - U only_in_taxon T: U is a feature found in only in organisms of species of taxon T. The feature cannot be found in an organism of any species outside of (not subsumed by) that taxon. Down-propagates in U hierarchy, up-propagates in T hierarchy (species taxonomy). Implies applicable_to_taxon. diff --git a/cl-full.json b/cl-full.json index 2df7f2ba0..e1713532a 100644 --- a/cl-full.json +++ b/cl-full.json @@ -6219,6 +6219,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002420" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000084", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009031" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000085", "pred": "is_a", @@ -8939,6 +8944,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001201" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000236", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009032" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000237", "pred": "is_a", @@ -10009,6 +10019,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001056" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000451", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009034" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000451", "pred": "is_a", @@ -12824,6 +12839,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000975" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000786", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009033" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000787", "pred": "is_a", @@ -19899,6 +19919,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0009025", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0009028", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -20769,6 +20794,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1000405", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1000405", "pred": "is_a", @@ -21934,6 +21964,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002680" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001516", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001567", "pred": "is_a", @@ -21959,6 +21994,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002624" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001585", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001585", "pred": "is_a", @@ -80649,6 +80689,26 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002179", "sub": "http://purl.obolibrary.org/obo/UBERON_0001219" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009031" + }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009032" + }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009033" + }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009034" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -154517,6 +154577,78 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009029", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000077" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009030", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_1001516" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009031", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000084" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009032", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000236" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009033", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000786" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009034", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000451" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_0010001", "genusIds": [ @@ -279058,6 +279190,240 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009029", + "lbl": "mesothelial cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A mesothelial cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix mesothelial cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009030", + "lbl": "enteroendocrine cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "An intestinal enteroendocrine cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix enteroendocrine cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009031", + "lbl": "T cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A T cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "T cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "T cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix T cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009032", + "lbl": "B cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A B cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "B cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "B cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix B cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009033", + "lbl": "plasma cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A plasma cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix plasma cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009034", + "lbl": "dendritic cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A dendritic cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix dendritic cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010000", "lbl": "keratinized cell of hair follicle", @@ -293510,7 +293876,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023042", - "lbl": "L6 corticothalamic-projecting projecting glutamatergic cortical neuron", + "lbl": "L6 corticothalamic-projecting glutamatergic cortical neuron", "meta": { "basicPropertyValues": [ { @@ -293574,7 +293940,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023044", - "lbl": "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -293605,7 +293971,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023045", - "lbl": "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -293850,7 +294216,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023053", - "lbl": "spinal interneuron syanpsing Betz cell", + "lbl": "spinal interneuron synapsing Betz cell", "meta": { "basicPropertyValues": [ { diff --git a/cl-full.obo b/cl-full.obo index ed6f4747d..5a44df215 100644 --- a/cl-full.obo +++ b/cl-full.obo @@ -25394,6 +25394,90 @@ intersection_of: part_of UBERON:0013486 ! crypt of Lieberkuhn of appendix relationship: part_of UBERON:0013486 ! crypt of Lieberkuhn of appendix created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009029 +name: mesothelial cell of appendix +def: "A mesothelial cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix mesothelial cell" EXACT [] +synonym: "mesothelial cell of appendix vermiformis" EXACT [] +synonym: "mesothelial cell of vermiform appendix" EXACT [] +is_a: CL:0009025 ! mesothelial cell of large intestine +is_a: CL:1000405 ! epithelial cell of appendix +intersection_of: CL:0000077 ! mesothelial cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009030 +name: enteroendocrine cell of appendix +def: "An intestinal enteroendocrine cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix enteroendocrine cell" EXACT [] +synonym: "enteroendocrine cell of appendix vermiformis" EXACT [] +synonym: "enteroendocrine cell of vermiform appendix" EXACT [] +is_a: CL:1001516 ! intestinal enteroendocrine cell +is_a: CL:1001585 ! appendix glandular cell +intersection_of: CL:1001516 ! intestinal enteroendocrine cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009031 +name: T cell of appendix +def: "A T cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix T cell" EXACT [] +synonym: "T cell of appendix vermiformis" EXACT [] +synonym: "T cell of vermiform appendix" EXACT [] +is_a: CL:0000084 ! T cell +intersection_of: CL:0000084 ! T cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009032 +name: B cell of appendix +def: "A B cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix B cell" EXACT [] +synonym: "B cell of appendix vermiformis" EXACT [] +synonym: "B cell of vermiform appendix" EXACT [] +is_a: CL:0000236 ! B cell +intersection_of: CL:0000236 ! B cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009033 +name: plasma cell of appendix +def: "A plasma cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix plasma cell" EXACT [] +synonym: "plasma cell of appendix vermiformis" EXACT [] +synonym: "plasma cell of vermiform appendix" EXACT [] +is_a: CL:0000786 ! plasma cell +intersection_of: CL:0000786 ! plasma cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009034 +name: dendritic cell of appendix +def: "A dendritic cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix dendritic cell" EXACT [] +synonym: "dendritic cell of appendix vermiformis" EXACT [] +synonym: "dendritic cell of vermiform appendix" EXACT [] +is_a: CL:0000451 ! dendritic cell +intersection_of: CL:0000451 ! dendritic cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -31817,7 +31901,7 @@ relationship: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023042 -name: L6 corticothalamic-projecting projecting glutamatergic cortical neuron +name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A corticothalamic-projecting neuron with a soma found in cortical layer 6." [DOI:10.1101/2020.10.19.343129] subset: BDS_subset synonym: "L6 CT" EXACT [] @@ -31838,7 +31922,7 @@ relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex [Term] id: CL:4023044 -name: non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "non-MY ET MOp (Mus)" EXACT [] @@ -31849,7 +31933,7 @@ relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex [Term] id: CL:4023045 -name: medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "MY ET MOp (Mus)" EXACT [] @@ -31939,7 +32023,7 @@ relationship: RO:0002120 CL:0008039 ! synapsed to lower motor neuron [Term] id: CL:4023053 -name: spinal interneuron syanpsing Betz cell +name: spinal interneuron synapsing Betz cell def: "A Betz cell that syanpses with spinal interneurons." [DOI:10.1101/2020.03.31.016972, PMID:18558853] is_a: CL:0008049 ! Betz cell relationship: dc-creator http://orcid.org/0000-0001-7258-9596 @@ -31961,7 +32045,7 @@ name: corticothalamic VAL/VM projecting glutamatergic neuron of the primary moto def: "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index." [PMID:20556241, PMID:9236245] subset: BDS_subset synonym: "CT VAL/VM MOp (Mus)" EXACT [] -is_a: CL:4023042 ! L6 corticothalamic-projecting projecting glutamatergic cortical neuron +is_a: CL:4023042 ! L6 corticothalamic-projecting glutamatergic cortical neuron relationship: bearer_of PATO:0070019 ! untufted pyramidal morphology relationship: dc-creator http://orcid.org/0000-0001-7258-9596 relationship: in_taxon NCBITaxon:10090 ! Mus musculus @@ -59157,8 +59241,8 @@ id: NCBITaxon:4751 name: Fungi namespace: ncbi_taxonomy synonym: "fungal-" RELATED PRO-short-label [PRO:DAN] -synonym: "fungi" RELATED blast_name [] synonym: "fungi" RELATED in_part [] +synonym: "fungi" RELATED blast_name [] synonym: "Mycota" RELATED genbank_synonym [] xref: GC_ID:1 xref: PMID:11062127 @@ -81301,8 +81385,8 @@ def: "external genital organs of the female mammal[WP]." [http://en.wikipedia.or subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "female pudendum" EXACT [BTO:0003101] synonym: "female pudendum" EXACT [FMA:20462] +synonym: "female pudendum" EXACT [BTO:0003101] synonym: "mammalian vulva" EXACT [] synonym: "puboperineal region" EXACT [FMA:20462] synonym: "pudendum" RELATED [BTO:0003101] diff --git a/cl-full.owl b/cl-full.owl index b4c977fca..5937ef605 100644 --- a/cl-full.owl +++ b/cl-full.owl @@ -83285,6 +83285,224 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + + + + + + A mesothelial cell that is located in a vermiform appendix. + + appendix mesothelial cell + mesothelial cell of appendix vermiformis + mesothelial cell of vermiform appendix + + mesothelial cell of appendix + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + + appendix enteroendocrine cell + enteroendocrine cell of appendix vermiformis + enteroendocrine cell of vermiform appendix + + enteroendocrine cell of appendix + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A T cell that is located in a vermiform appendix. + + T cell of appendix vermiformis + T cell of vermiform appendix + appendix T cell + + T cell of appendix + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A B cell that is located in a vermiform appendix. + + B cell of appendix vermiformis + B cell of vermiform appendix + appendix B cell + + B cell of appendix + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A plasma cell that is located in a vermiform appendix. + + appendix plasma cell + plasma cell of appendix vermiformis + plasma cell of vermiform appendix + + plasma cell of appendix + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A dendritic cell that is located in a vermiform appendix. + + appendix dendritic cell + dendritic cell of appendix vermiformis + dendritic cell of vermiform appendix + + dendritic cell of appendix + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + @@ -103088,7 +103306,7 @@ plexiform layer using GABA. L6 CT - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -103152,7 +103370,7 @@ plexiform layer using GABA. non-MY ET MOp (Mus) - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -103191,7 +103409,7 @@ plexiform layer using GABA. MY ET MOp (Mus) - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -103435,7 +103653,7 @@ plexiform layer using GABA. - spinal interneuron syanpsing Betz cell + spinal interneuron synapsing Betz cell @@ -114443,7 +114661,7 @@ plexiform layer using GABA. A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. - GOC:pdt + GOC:pdt @@ -114809,7 +115027,7 @@ plexiform layer using GABA. A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). - GOC:pdt + GOC:pdt NIF_Subcellular:sao1337158144 @@ -115629,7 +115847,7 @@ plexiform layer using GABA. The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. - ISBN:0192800981 + ISBN:0192800981 @@ -116456,7 +116674,7 @@ plexiform layer using GABA. A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. GOC:cjm - GOC:dhl + GOC:dhl GOC:ecd GOC:go_curators GOC:mtg_apoptosis @@ -118383,7 +118601,7 @@ plexiform layer using GABA. A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -125021,7 +125239,7 @@ plexiform layer using GABA. The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties. - ISBN:0192800981 + ISBN:0192800981 @@ -125116,7 +125334,7 @@ plexiform layer using GABA. RBC differentiation - CL:0000232 + CL:0000232 @@ -125129,7 +125347,7 @@ plexiform layer using GABA. red blood cell differentiation - CL:0000232 + CL:0000232 @@ -126872,7 +127090,7 @@ plexiform layer using GABA. A vesicle found in the cytoplasm of a cell. GOC:ai GOC:mah - GOC:vesicles + GOC:vesicles @@ -127122,7 +127340,7 @@ plexiform layer using GABA. Any small, fluid-filled, spherical organelle enclosed by membrane. GOC:mah GOC:pz - GOC:vesicles + GOC:vesicles @@ -128929,7 +129147,7 @@ plexiform layer using GABA. The appearance of type I interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. GOC:add ISBN:0126896631 - PMID:15546383 + PMID:15546383 PMID:16681834 @@ -128964,7 +129182,7 @@ plexiform layer using GABA. The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -129386,7 +129604,7 @@ plexiform layer using GABA. Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -129972,7 +130190,7 @@ plexiform layer using GABA. Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -130632,7 +130850,7 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -133164,19 +133382,19 @@ plexiform layer using GABA. Any process of regulating the production and elimination of erythrocytes within an organism. GOC:add PMID:10694114 - PMID:14754397 + PMID:14754397 RBC homeostasis - CL:0000232 + CL:0000232 red blood cell homeostasis - CL:0000232 + CL:0000232 @@ -133206,25 +133424,25 @@ plexiform layer using GABA. The selective elimination of erythrocytes from the body by autoregulatory mechanisms. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 RBC clearance - CL:0000232 + CL:0000232 red blood cell clearance - CL:0000232 + CL:0000232 neocytolysis - PMID:14754397 + PMID:14754397 @@ -133371,25 +133589,25 @@ plexiform layer using GABA. Any process that modulates the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 regulation of RBC clearance - CL:0000232 + CL:0000232 regulation of red blood cell clearance - CL:0000232 + CL:0000232 regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -133431,25 +133649,25 @@ plexiform layer using GABA. Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 negative regulation of RBC clearance - CL:0000232 + CL:0000232 negative regulation of red blood cell clearance - CL:0000232 + CL:0000232 negative regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -133491,25 +133709,25 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 positive regulation of RBC clearance - CL:0000232 + CL:0000232 positive regulation of red blood cell clearance - CL:0000232 + CL:0000232 positive regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -137389,7 +137607,7 @@ plexiform layer using GABA. The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte. - GOC:rk + GOC:rk PMID:14685684 @@ -138831,7 +139049,7 @@ plexiform layer using GABA. Any process evolved to enable an interaction with an organism of a different species. - GOC:cc + GOC:cc @@ -141039,13 +141257,13 @@ plexiform layer using GABA. regulation of RBC differentiation - CL:0000232 + CL:0000232 regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -141093,13 +141311,13 @@ plexiform layer using GABA. negative regulation of RBC differentiation - CL:0000232 + CL:0000232 negative regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -141148,13 +141366,13 @@ plexiform layer using GABA. positive regulation of RBC differentiation - CL:0000232 + CL:0000232 positive regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -153165,7 +153383,7 @@ plexiform layer using GABA. A compound molecular function in which an effector function is controlled by one or more regulatory components. GOC:dos - GOC:pdt + GOC:pdt @@ -153195,7 +153413,7 @@ plexiform layer using GABA. The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way. - GOC:mtg_MIT_16mar07 + GOC:mtg_MIT_16mar07 GOC:vw @@ -158097,7 +158315,7 @@ plexiform layer using GABA. extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -158280,7 +158498,7 @@ plexiform layer using GABA. Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). - GOC:dhl + GOC:dhl @@ -159273,7 +159491,7 @@ plexiform layer using GABA. The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. - CL:0000451 + CL:0000451 GOC:pr @@ -159354,7 +159572,7 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. GOC:BHF - GOC:sjp + GOC:sjp PMID:18550748 @@ -159375,7 +159593,7 @@ plexiform layer using GABA. Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure. - GOC:sjw + GOC:sjw PMID:7583672 @@ -159539,7 +159757,7 @@ plexiform layer using GABA. Any vesicle that is part of the intracellular region. - GOC:vesicles + GOC:vesicles @@ -170051,7 +170269,7 @@ plexiform layer using GABA. regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -170120,7 +170338,7 @@ plexiform layer using GABA. negative regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -170201,7 +170419,7 @@ plexiform layer using GABA. positive regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -170572,7 +170790,7 @@ plexiform layer using GABA. microparticle - GOC:vesicles + GOC:vesicles @@ -183131,7 +183349,7 @@ plexiform layer using GABA. conformation - VT:1000738 + VT:1000738 @@ -183436,7 +183654,7 @@ plexiform layer using GABA. A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. - Wikipedia:http://en.wikipedia.org/wiki/Ploidy + Wikipedia:http://en.wikipedia.org/wiki/Ploidy @@ -183456,7 +183674,7 @@ plexiform layer using GABA. A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. - Wikipedia:http://en.wikipedia.org/wiki/Haploid + Wikipedia:http://en.wikipedia.org/wiki/Haploid @@ -238865,7 +239083,7 @@ plexiform layer using GABA. A light sensing organ composed of ommatidia - FB:gg + FB:gg @@ -239009,7 +239227,7 @@ plexiform layer using GABA. VHOG:0000275 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -243464,7 +243682,7 @@ plexiform layer using GABA. bilaminary germ disc - ISBN:9780878932504 + ISBN:9780878932504 @@ -246354,7 +246572,7 @@ plexiform layer using GABA. - FMA-abduced + FMA-abduced @@ -250512,7 +250730,7 @@ plexiform layer using GABA. FEED:rd - ISBN:1607950324 + ISBN:1607950324 @@ -258244,7 +258462,7 @@ plexiform layer using GABA. VHOG:0000169 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -258406,7 +258624,7 @@ plexiform layer using GABA. VHOG:0000229 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -259472,7 +259690,7 @@ plexiform layer using GABA. TAO:0000367 UMLS:C0022417 VHOG:0001276 - VSAO:0000101 + VSAO:0000101 XAO:0000171 ZFA:0001596 galen:Joint @@ -259494,14 +259712,14 @@ plexiform layer using GABA. GO_REF:0000034 - VSAO:0000101 + VSAO:0000101 Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] 2012-08-14 - VSAO:0000101 + VSAO:0000101 VSAO PSPUB:0000170 @@ -259518,14 +259736,14 @@ plexiform layer using GABA. articulation - VSAO:0000101 + VSAO:0000101 joint FMA:7490 - VSAO:0000101 + VSAO:0000101 @@ -259605,7 +259823,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -261097,7 +261315,7 @@ plexiform layer using GABA. AAO:0010788 - BTO:0001234 + BTO:0001234 CALOHA:TS-0919 EFO:0000986 EMAPA:19180 @@ -261136,7 +261354,7 @@ plexiform layer using GABA. Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct. - BTO:0001234 + BTO:0001234 @@ -261168,13 +261386,13 @@ plexiform layer using GABA. glandula seminalis - BTO:0001234 + BTO:0001234 glandula vesiculosa - BTO:0001234 + BTO:0001234 @@ -261186,7 +261404,7 @@ plexiform layer using GABA. vesicula seminalis - BTO:0001234 + BTO:0001234 @@ -261823,7 +262041,7 @@ plexiform layer using GABA. Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. - FB:gg + FB:gg NLM:alimentary+system @@ -262400,7 +262618,7 @@ plexiform layer using GABA. BIRNLEX:844 ISBN:0-14-051288-8 - ISBN:3110148986 + ISBN:3110148986 NLM:nervous+system WB:rynl ZFIN:curator @@ -262535,7 +262753,7 @@ plexiform layer using GABA. - FBbt + FBbt cjm @@ -262837,7 +263055,7 @@ plexiform layer using GABA. - FBbt + FBbt @@ -278248,7 +278466,7 @@ plexiform layer using GABA. MP treats ureter urothelium and ureter luminal urothelium as exact synonyms, yes MA treats these as distinct; see also: transitional epithelium vs urothelium - MP + MP @@ -286709,7 +286927,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -287880,7 +288098,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -288047,7 +288265,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -288194,7 +288412,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -293374,7 +293592,7 @@ plexiform layer using GABA. A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII - FEED:rd + FEED:rd @@ -293622,7 +293840,7 @@ plexiform layer using GABA. - FEED + FEED Wikipedia @@ -293647,7 +293865,7 @@ plexiform layer using GABA. The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] 2012-07-02 - FEED + FEED http://www.feedexp.org @@ -293741,14 +293959,14 @@ plexiform layer using GABA. - FEED + FEED Wikipedia A muscle innervated by a facial nerve. - FEED:rd + FEED:rd @@ -298235,7 +298453,7 @@ plexiform layer using GABA. basi paired exo and supra occipital bones - MA-modified + MA-modified @@ -300705,7 +300923,7 @@ plexiform layer using GABA. A muscular organ in the floor of the mouth. - FEED:rd + FEED:rd @@ -300844,7 +301062,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -303675,7 +303893,7 @@ plexiform layer using GABA. VHOG:0000101 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -304268,7 +304486,7 @@ plexiform layer using GABA. VHOG:0000102 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -304430,7 +304648,7 @@ plexiform layer using GABA. MP treats posterior uvea and optic choroid as distinct - MP + MP @@ -306010,7 +306228,7 @@ plexiform layer using GABA. NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030] - NIF + NIF @@ -311900,7 +312118,7 @@ plexiform layer using GABA. The most anterior region the brain including both the telencephalon and diencephalon. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -321424,7 +321642,7 @@ plexiform layer using GABA. Muscle tissue that contains fibers that are divided by transverse bands into striations. CL:0000737 GOC:dph - GOC:mtg_muscle + GOC:mtg_muscle @@ -323729,7 +323947,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -330563,7 +330781,7 @@ plexiform layer using GABA. VHOG:0000141 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -330808,7 +331026,7 @@ plexiform layer using GABA. VHOG:0000142 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -333386,7 +333604,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -334316,7 +334534,7 @@ plexiform layer using GABA. The definition was adapted from the NIFSTD class which has been retired. It has been generalized so it is applicable to various different kinds of olfactory tracts found in different taxa. - cjm + cjm ISBN:0471888893 @@ -336632,7 +336850,7 @@ plexiform layer using GABA. nlx_anat_101177 seems to have been lost in the transition from NIFGA to Neurolex - NIF + NIF https://github.com/SciCrunch/NIF-Ontology/issues/83 @@ -340803,7 +341021,7 @@ plexiform layer using GABA. AAO:0010551 - BTO:0000047 + BTO:0000047 CALOHA:TS-0016 EFO:0000238 EMAPA:18426 @@ -340868,7 +341086,7 @@ plexiform layer using GABA. Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. - BTO:0000047 + BTO:0000047 @@ -340913,19 +341131,19 @@ plexiform layer using GABA. adrenal - BTO:0000047 + BTO:0000047 adrenal capsule - BTO:0000047 + BTO:0000047 atrabiliary capsule - BTO:0000047 + BTO:0000047 @@ -340937,13 +341155,13 @@ plexiform layer using GABA. epinephros - BTO:0000047 + BTO:0000047 glandula suprarenalis - BTO:0000047 + BTO:0000047 @@ -340956,7 +341174,7 @@ plexiform layer using GABA. suprarenal capsule - BTO:0000047 + BTO:0000047 @@ -341502,7 +341720,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -342697,7 +342915,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -351155,7 +351373,7 @@ plexiform layer using GABA. in NIFSTD this is the mereological sum of the individual complexes - in MA it is the superclass - NIF + NIF @@ -353861,7 +354079,7 @@ plexiform layer using GABA. MP defines as epithelial sac, but EHDAA defines as multi-tissue; See https://github.com/obophenotype/uberon/issues/1305 - MP + MP @@ -356282,7 +356500,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -356598,7 +356816,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -357927,7 +358145,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010365 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358039,7 +358257,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010366 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358153,7 +358371,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010368 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358424,7 +358642,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010418 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358561,7 +358779,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010419 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358687,7 +358905,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010420 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358820,7 +359038,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010422 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -361781,7 +361999,7 @@ plexiform layer using GABA. amnionic ectoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -385353,7 +385571,7 @@ plexiform layer using GABA. Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. FMA:71385 - ISBN:3110148986 + ISBN:3110148986 @@ -386254,7 +386472,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -386270,7 +386488,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -393703,7 +393921,7 @@ plexiform layer using GABA. MP defines this in a may more appropriate to somatosensory cortex - MP + MP @@ -394832,7 +395050,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -399653,7 +399871,7 @@ plexiform layer using GABA. NIF divides this into main and accessory - NIF + NIF @@ -411343,7 +411561,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -437444,7 +437662,7 @@ plexiform layer using GABA. hair gem - ISBN:9780878932504 + ISBN:9780878932504 @@ -437456,7 +437674,7 @@ plexiform layer using GABA. hair peg - ISBN:9780878932504 + ISBN:9780878932504 @@ -442656,7 +442874,7 @@ plexiform layer using GABA. Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. - ISBN:0683400088 + ISBN:0683400088 MP:0011260 @@ -445886,7 +446104,7 @@ plexiform layer using GABA. Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) BAMS:Or - BIRNLEX:4113 + BIRNLEX:4113 EMAPA:35412 FMA:83893 MA:0000958 @@ -445907,43 +446125,43 @@ plexiform layer using GABA. Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) - BIRNLEX:4113 + BIRNLEX:4113 http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=157 - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 stratum oriens - BIRNLEX:4113 + BIRNLEX:4113 @@ -446645,7 +446863,7 @@ plexiform layer using GABA. FMA:83900 MA:0000897 NCIT:C33137 - NLXANAT:090807 + NLXANAT:090807 PBA:294021786 UMLS:C1709063 cerebral cortex, layer 1 @@ -446681,7 +446899,7 @@ plexiform layer using GABA. The most superficial layer of the neocortex characterized by a paucity of cell bodies. - NLXANAT:090807 + NLXANAT:090807 @@ -446707,13 +446925,13 @@ plexiform layer using GABA. layer 1 of neocortex - NLXANAT:090807 + NLXANAT:090807 layer I of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -446737,37 +446955,37 @@ plexiform layer using GABA. molecular layer of neocortex - NLXANAT:090807 + NLXANAT:090807 neocortex layer 1 - NLXANAT:090807 + NLXANAT:090807 neocortex layer I - NLXANAT:090807 + NLXANAT:090807 neocortex molecular layer - NLXANAT:090807 + NLXANAT:090807 neocortex plexiform layer - NLXANAT:090807 + NLXANAT:090807 plexiform layer of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -446826,7 +447044,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -446955,7 +447173,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -447120,7 +447338,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -447284,7 +447502,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -454406,7 +454624,7 @@ plexiform layer using GABA. A ring of cells capable of forming a limb. - ISBN:9780878932504 + ISBN:9780878932504 @@ -454811,7 +455029,7 @@ plexiform layer using GABA. optic nerve (II) foramen ZFA:0005428 - ZFIN:ZDB-PUB-961014-192 + ZFIN:ZDB-PUB-961014-192 @@ -459625,7 +459843,7 @@ plexiform layer using GABA. The left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]. - MP:0010566 + MP:0010566 @@ -459657,7 +459875,7 @@ plexiform layer using GABA. left bundle branch - MP:0010566 + MP:0010566 @@ -459669,25 +459887,25 @@ plexiform layer using GABA. left bundle of atrioventricular bundle - MP:0010566 + MP:0010566 left crus of atrioventricular bundle - MP:0010566 + MP:0010566 left posterior branch - MP:0010566 + MP:0010566 left posterior bundle - MP:0010566 + MP:0010566 @@ -460592,7 +460810,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000092 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -460718,7 +460936,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -460815,7 +461033,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000082 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -464230,7 +464448,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced ZFA @@ -466759,7 +466977,7 @@ plexiform layer using GABA. - FMA-abduced + FMA-abduced @@ -472959,7 +473177,7 @@ plexiform layer using GABA. VHOG:0000244 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -474476,7 +474694,7 @@ plexiform layer using GABA. An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -478208,7 +478426,7 @@ plexiform layer using GABA. enveloping layer - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -480222,14 +480440,14 @@ plexiform layer using GABA. - FBbt + FBbt AEO - FBbt + FBbt @@ -487444,7 +487662,7 @@ plexiform layer using GABA. Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -490371,7 +490589,7 @@ plexiform layer using GABA. The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium. GOC:dph GOC:sdb_2009 - GOC:tb + GOC:tb @@ -492699,7 +492917,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -494419,7 +494637,7 @@ plexiform layer using GABA. - MA-modified + MA-modified @@ -497007,7 +497225,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -499490,7 +499708,7 @@ plexiform layer using GABA. - FBbt + FBbt @@ -499972,7 +500190,7 @@ plexiform layer using GABA. - ISBN:1607950324 + ISBN:1607950324 @@ -504781,7 +504999,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -508180,7 +508398,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -508598,7 +508816,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -508999,7 +509217,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -509136,7 +509354,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -509550,7 +509768,7 @@ plexiform layer using GABA. antebrachium skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -510159,7 +510377,7 @@ plexiform layer using GABA. crus skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -514672,7 +514890,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -515038,13 +515256,13 @@ plexiform layer using GABA. - FBbt + FBbt - FBbt + FBbt @@ -516698,7 +516916,7 @@ plexiform layer using GABA. EMAPA - FMA-abduced + FMA-abduced ZFA-abduced @@ -520363,7 +520581,7 @@ plexiform layer using GABA. A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520491,13 +520709,13 @@ plexiform layer using GABA. A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni digitopodium - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520559,7 +520777,7 @@ plexiform layer using GABA. A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520604,7 +520822,7 @@ plexiform layer using GABA. A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -531083,41 +531301,41 @@ plexiform layer using GABA. isthmus cinguli - NeuroNames:163 + NeuroNames:163 isthmus gyri cingulatus - NeuroNames:163 + NeuroNames:163 isthmus gyri cinguli - NeuroNames:163 + NeuroNames:163 isthmus of gyrus fornicatus - NeuroNames:163 + NeuroNames:163 isthmus of the cingulate gyrus - NeuroNames:163 + NeuroNames:163 isthmus-2 - NeuroNames:163 + NeuroNames:163 @@ -544458,7 +544676,7 @@ plexiform layer using GABA. - nlx + nlx @@ -544469,7 +544687,7 @@ plexiform layer using GABA. - nlx + nlx @@ -546675,7 +546893,7 @@ plexiform layer using GABA. The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts. BTO:0001513 - MGI:cs + MGI:cs @@ -553947,7 +554165,7 @@ plexiform layer using GABA. A collection of hairs that grows on the external ear. - UBERON:EJS + UBERON:EJS @@ -553997,7 +554215,7 @@ plexiform layer using GABA. A zone of skin that is part of the face. - UBERON:EJS + UBERON:EJS @@ -566306,8 +566524,8 @@ plexiform layer using GABA. true - MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z - infer input from direct reg + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg diff --git a/cl-non-classified.json b/cl-non-classified.json index b7bf26008..3bc5faa10 100644 --- a/cl-non-classified.json +++ b/cl-non-classified.json @@ -138762,6 +138762,78 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009029", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000077" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009030", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_1001516" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009031", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000084" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009032", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000236" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009033", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000786" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009034", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000451" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_0010001", "genusIds": [ @@ -263303,6 +263375,240 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009029", + "lbl": "mesothelial cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A mesothelial cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix mesothelial cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009030", + "lbl": "enteroendocrine cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "An intestinal enteroendocrine cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix enteroendocrine cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009031", + "lbl": "T cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A T cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "T cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "T cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix T cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009032", + "lbl": "B cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A B cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "B cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "B cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix B cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009033", + "lbl": "plasma cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A plasma cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix plasma cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009034", + "lbl": "dendritic cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A dendritic cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix dendritic cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010000", "lbl": "keratinized cell of hair follicle", @@ -277755,7 +278061,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023042", - "lbl": "L6 corticothalamic-projecting projecting glutamatergic cortical neuron", + "lbl": "L6 corticothalamic-projecting glutamatergic cortical neuron", "meta": { "basicPropertyValues": [ { @@ -277819,7 +278125,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023044", - "lbl": "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -277850,7 +278156,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023045", - "lbl": "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -278095,7 +278401,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023053", - "lbl": "spinal interneuron syanpsing Betz cell", + "lbl": "spinal interneuron synapsing Betz cell", "meta": { "basicPropertyValues": [ { diff --git a/cl-non-classified.obo b/cl-non-classified.obo index 217917a75..ff138d379 100644 --- a/cl-non-classified.obo +++ b/cl-non-classified.obo @@ -22942,6 +22942,78 @@ intersection_of: CL:0002250 ! intestinal crypt stem cell intersection_of: part_of UBERON:0013486 ! crypt of Lieberkuhn of appendix created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009029 +name: mesothelial cell of appendix +def: "A mesothelial cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix mesothelial cell" EXACT [] +synonym: "mesothelial cell of appendix vermiformis" EXACT [] +synonym: "mesothelial cell of vermiform appendix" EXACT [] +intersection_of: CL:0000077 ! mesothelial cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009030 +name: enteroendocrine cell of appendix +def: "An intestinal enteroendocrine cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix enteroendocrine cell" EXACT [] +synonym: "enteroendocrine cell of appendix vermiformis" EXACT [] +synonym: "enteroendocrine cell of vermiform appendix" EXACT [] +intersection_of: CL:1001516 ! intestinal enteroendocrine cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009031 +name: T cell of appendix +def: "A T cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix T cell" EXACT [] +synonym: "T cell of appendix vermiformis" EXACT [] +synonym: "T cell of vermiform appendix" EXACT [] +intersection_of: CL:0000084 ! T cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009032 +name: B cell of appendix +def: "A B cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix B cell" EXACT [] +synonym: "B cell of appendix vermiformis" EXACT [] +synonym: "B cell of vermiform appendix" EXACT [] +intersection_of: CL:0000236 ! B cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009033 +name: plasma cell of appendix +def: "A plasma cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix plasma cell" EXACT [] +synonym: "plasma cell of appendix vermiformis" EXACT [] +synonym: "plasma cell of vermiform appendix" EXACT [] +intersection_of: CL:0000786 ! plasma cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009034 +name: dendritic cell of appendix +def: "A dendritic cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix dendritic cell" EXACT [] +synonym: "dendritic cell of appendix vermiformis" EXACT [] +synonym: "dendritic cell of vermiform appendix" EXACT [] +intersection_of: CL:0000451 ! dendritic cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -28789,7 +28861,7 @@ relationship: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023042 -name: L6 corticothalamic-projecting projecting glutamatergic cortical neuron +name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A corticothalamic-projecting neuron with a soma found in cortical layer 6." [DOI:10.1101/2020.10.19.343129] subset: BDS_subset synonym: "L6 CT" EXACT [] @@ -28811,7 +28883,7 @@ relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex [Term] id: CL:4023044 -name: non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "non-MY ET MOp (Mus)" EXACT [] @@ -28822,7 +28894,7 @@ relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex [Term] id: CL:4023045 -name: medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "MY ET MOp (Mus)" EXACT [] @@ -28913,7 +28985,7 @@ relationship: RO:0002120 CL:0008039 ! synapsed to lower motor neuron [Term] id: CL:4023053 -name: spinal interneuron syanpsing Betz cell +name: spinal interneuron synapsing Betz cell def: "A Betz cell that syanpses with spinal interneurons." [DOI:10.1101/2020.03.31.016972, PMID:18558853] is_a: CL:0008049 ! Betz cell relationship: dc-creator http://orcid.org/0000-0001-7258-9596 @@ -28935,7 +29007,7 @@ name: corticothalamic VAL/VM projecting glutamatergic neuron of the primary moto def: "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index." [PMID:20556241, PMID:9236245] subset: BDS_subset synonym: "CT VAL/VM MOp (Mus)" EXACT [] -is_a: CL:4023042 ! L6 corticothalamic-projecting projecting glutamatergic cortical neuron +is_a: CL:4023042 ! L6 corticothalamic-projecting glutamatergic cortical neuron relationship: bearer_of PATO:0070019 ! untufted pyramidal morphology relationship: dc-creator http://orcid.org/0000-0001-7258-9596 relationship: in_taxon NCBITaxon:10090 ! Mus musculus @@ -56133,8 +56205,8 @@ id: NCBITaxon:4751 name: Fungi namespace: ncbi_taxonomy synonym: "fungal-" RELATED PRO-short-label [PRO:DAN] -synonym: "fungi" RELATED blast_name [] synonym: "fungi" RELATED in_part [] +synonym: "fungi" RELATED blast_name [] synonym: "Mycota" RELATED genbank_synonym [] xref: GC_ID:1 xref: PMID:11062127 @@ -93114,8 +93186,8 @@ namespace: uberon def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm] subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] -synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus] +synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] xref: Brachial:plexus xref: EHDAA2:0000180 xref: EHDAA:3782 @@ -101465,8 +101537,8 @@ xref: EV:0100173 xref: FMA:77624 xref: GAID:633 xref: HBA:9303 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"} xref: http://linkedlifedata.com/resource/umls/id/C0028936 xref: http://www.snomedbrowser.com/Codes/Details/279394006 xref: MA:0000194 @@ -135215,8 +135287,8 @@ xref: BAMS:BG xref: BAMS:BNC xref: BIRNLEX:1629 xref: EV:0100182 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:1629"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 xref: http://linkedlifedata.com/resource/umls/id/C0004781 xref: UMLS:C0004781 {source="BIRNLEX:1629"} is_a: UBERON:0007245 ! nuclear complex of neuraxis diff --git a/cl-non-classified.owl b/cl-non-classified.owl index a36bf2b96..7af42d1b8 100644 --- a/cl-non-classified.owl +++ b/cl-non-classified.owl @@ -71679,6 +71679,192 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + + + + A mesothelial cell that is located in a vermiform appendix. + + appendix mesothelial cell + mesothelial cell of appendix vermiformis + mesothelial cell of vermiform appendix + + mesothelial cell of appendix + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + + appendix enteroendocrine cell + enteroendocrine cell of appendix vermiformis + enteroendocrine cell of vermiform appendix + + enteroendocrine cell of appendix + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A T cell that is located in a vermiform appendix. + + T cell of appendix vermiformis + T cell of vermiform appendix + appendix T cell + + T cell of appendix + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A B cell that is located in a vermiform appendix. + + B cell of appendix vermiformis + B cell of vermiform appendix + appendix B cell + + B cell of appendix + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A plasma cell that is located in a vermiform appendix. + + appendix plasma cell + plasma cell of appendix vermiformis + plasma cell of vermiform appendix + + plasma cell of appendix + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + A dendritic cell that is located in a vermiform appendix. + + appendix dendritic cell + dendritic cell of appendix vermiformis + dendritic cell of vermiform appendix + + dendritic cell of appendix + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + @@ -90439,7 +90625,7 @@ plexiform layer using GABA. L6 CT - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -90503,7 +90689,7 @@ plexiform layer using GABA. non-MY ET MOp (Mus) - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -90542,7 +90728,7 @@ plexiform layer using GABA. MY ET MOp (Mus) - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -90792,7 +90978,7 @@ plexiform layer using GABA. - spinal interneuron syanpsing Betz cell + spinal interneuron synapsing Betz cell @@ -101768,7 +101954,7 @@ plexiform layer using GABA. A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. - GOC:pdt + GOC:pdt @@ -102134,7 +102320,7 @@ plexiform layer using GABA. A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). - GOC:pdt + GOC:pdt NIF_Subcellular:sao1337158144 @@ -102955,7 +103141,7 @@ plexiform layer using GABA. The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. - ISBN:0192800981 + ISBN:0192800981 @@ -103782,7 +103968,7 @@ plexiform layer using GABA. A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. GOC:cjm - GOC:dhl + GOC:dhl GOC:ecd GOC:go_curators GOC:mtg_apoptosis @@ -105709,7 +105895,7 @@ plexiform layer using GABA. A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -112347,7 +112533,7 @@ plexiform layer using GABA. The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties. - ISBN:0192800981 + ISBN:0192800981 @@ -112442,7 +112628,7 @@ plexiform layer using GABA. RBC differentiation - CL:0000232 + CL:0000232 @@ -112455,7 +112641,7 @@ plexiform layer using GABA. red blood cell differentiation - CL:0000232 + CL:0000232 @@ -114198,7 +114384,7 @@ plexiform layer using GABA. A vesicle found in the cytoplasm of a cell. GOC:ai GOC:mah - GOC:vesicles + GOC:vesicles @@ -114448,7 +114634,7 @@ plexiform layer using GABA. Any small, fluid-filled, spherical organelle enclosed by membrane. GOC:mah GOC:pz - GOC:vesicles + GOC:vesicles @@ -116255,7 +116441,7 @@ plexiform layer using GABA. The appearance of type I interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. GOC:add ISBN:0126896631 - PMID:15546383 + PMID:15546383 PMID:16681834 @@ -116290,7 +116476,7 @@ plexiform layer using GABA. The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -116712,7 +116898,7 @@ plexiform layer using GABA. Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -117298,7 +117484,7 @@ plexiform layer using GABA. Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -117958,7 +118144,7 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -120490,19 +120676,19 @@ plexiform layer using GABA. Any process of regulating the production and elimination of erythrocytes within an organism. GOC:add PMID:10694114 - PMID:14754397 + PMID:14754397 RBC homeostasis - CL:0000232 + CL:0000232 red blood cell homeostasis - CL:0000232 + CL:0000232 @@ -120532,25 +120718,25 @@ plexiform layer using GABA. The selective elimination of erythrocytes from the body by autoregulatory mechanisms. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 RBC clearance - CL:0000232 + CL:0000232 red blood cell clearance - CL:0000232 + CL:0000232 neocytolysis - PMID:14754397 + PMID:14754397 @@ -120697,25 +120883,25 @@ plexiform layer using GABA. Any process that modulates the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 regulation of RBC clearance - CL:0000232 + CL:0000232 regulation of red blood cell clearance - CL:0000232 + CL:0000232 regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -120757,25 +120943,25 @@ plexiform layer using GABA. Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 negative regulation of RBC clearance - CL:0000232 + CL:0000232 negative regulation of red blood cell clearance - CL:0000232 + CL:0000232 negative regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -120817,25 +121003,25 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 positive regulation of RBC clearance - CL:0000232 + CL:0000232 positive regulation of red blood cell clearance - CL:0000232 + CL:0000232 positive regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -124715,7 +124901,7 @@ plexiform layer using GABA. The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte. - GOC:rk + GOC:rk PMID:14685684 @@ -126157,7 +126343,7 @@ plexiform layer using GABA. Any process evolved to enable an interaction with an organism of a different species. - GOC:cc + GOC:cc @@ -128365,13 +128551,13 @@ plexiform layer using GABA. regulation of RBC differentiation - CL:0000232 + CL:0000232 regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -128419,13 +128605,13 @@ plexiform layer using GABA. negative regulation of RBC differentiation - CL:0000232 + CL:0000232 negative regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -128474,13 +128660,13 @@ plexiform layer using GABA. positive regulation of RBC differentiation - CL:0000232 + CL:0000232 positive regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -140491,7 +140677,7 @@ plexiform layer using GABA. A compound molecular function in which an effector function is controlled by one or more regulatory components. GOC:dos - GOC:pdt + GOC:pdt @@ -140521,7 +140707,7 @@ plexiform layer using GABA. The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way. - GOC:mtg_MIT_16mar07 + GOC:mtg_MIT_16mar07 GOC:vw @@ -145428,7 +145614,7 @@ plexiform layer using GABA. extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -145611,7 +145797,7 @@ plexiform layer using GABA. Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). - GOC:dhl + GOC:dhl @@ -146604,7 +146790,7 @@ plexiform layer using GABA. The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. - CL:0000451 + CL:0000451 GOC:pr @@ -146685,7 +146871,7 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. GOC:BHF - GOC:sjp + GOC:sjp PMID:18550748 @@ -146706,7 +146892,7 @@ plexiform layer using GABA. Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure. - GOC:sjw + GOC:sjw PMID:7583672 @@ -146870,7 +147056,7 @@ plexiform layer using GABA. Any vesicle that is part of the intracellular region. - GOC:vesicles + GOC:vesicles @@ -157382,7 +157568,7 @@ plexiform layer using GABA. regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -157451,7 +157637,7 @@ plexiform layer using GABA. negative regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -157532,7 +157718,7 @@ plexiform layer using GABA. positive regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -157903,7 +158089,7 @@ plexiform layer using GABA. microparticle - GOC:vesicles + GOC:vesicles @@ -170467,7 +170653,7 @@ plexiform layer using GABA. conformation - VT:1000738 + VT:1000738 @@ -170772,7 +170958,7 @@ plexiform layer using GABA. A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. - Wikipedia:http://en.wikipedia.org/wiki/Ploidy + Wikipedia:http://en.wikipedia.org/wiki/Ploidy @@ -170792,7 +170978,7 @@ plexiform layer using GABA. A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. - Wikipedia:http://en.wikipedia.org/wiki/Haploid + Wikipedia:http://en.wikipedia.org/wiki/Haploid @@ -229024,7 +229210,7 @@ plexiform layer using GABA. A light sensing organ composed of ommatidia - FB:gg + FB:gg @@ -229168,7 +229354,7 @@ plexiform layer using GABA. VHOG:0000275 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -236477,7 +236663,7 @@ plexiform layer using GABA. - FMA-abduced + FMA-abduced @@ -240624,7 +240810,7 @@ plexiform layer using GABA. FEED:rd - ISBN:1607950324 + ISBN:1607950324 @@ -248342,7 +248528,7 @@ plexiform layer using GABA. VHOG:0000169 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -248504,7 +248690,7 @@ plexiform layer using GABA. VHOG:0000229 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -249563,7 +249749,7 @@ plexiform layer using GABA. TAO:0000367 UMLS:C0022417 VHOG:0001276 - VSAO:0000101 + VSAO:0000101 XAO:0000171 ZFA:0001596 galen:Joint @@ -249585,14 +249771,14 @@ plexiform layer using GABA. GO_REF:0000034 - VSAO:0000101 + VSAO:0000101 Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] 2012-08-14 - VSAO:0000101 + VSAO:0000101 VSAO PSPUB:0000170 @@ -249609,14 +249795,14 @@ plexiform layer using GABA. articulation - VSAO:0000101 + VSAO:0000101 joint FMA:7490 - VSAO:0000101 + VSAO:0000101 @@ -249696,7 +249882,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -251185,7 +251371,7 @@ plexiform layer using GABA. AAO:0010788 - BTO:0001234 + BTO:0001234 CALOHA:TS-0919 EFO:0000986 EMAPA:19180 @@ -251224,7 +251410,7 @@ plexiform layer using GABA. Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct. - BTO:0001234 + BTO:0001234 @@ -251256,13 +251442,13 @@ plexiform layer using GABA. glandula seminalis - BTO:0001234 + BTO:0001234 glandula vesiculosa - BTO:0001234 + BTO:0001234 @@ -251274,7 +251460,7 @@ plexiform layer using GABA. vesicula seminalis - BTO:0001234 + BTO:0001234 @@ -251911,7 +252097,7 @@ plexiform layer using GABA. Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. - FB:gg + FB:gg NLM:alimentary+system @@ -252486,7 +252672,7 @@ plexiform layer using GABA. BIRNLEX:844 ISBN:0-14-051288-8 - ISBN:3110148986 + ISBN:3110148986 NLM:nervous+system WB:rynl ZFIN:curator @@ -252621,7 +252807,7 @@ plexiform layer using GABA. - FBbt + FBbt cjm @@ -252923,7 +253109,7 @@ plexiform layer using GABA. - FBbt + FBbt @@ -268319,7 +268505,7 @@ plexiform layer using GABA. MP treats ureter urothelium and ureter luminal urothelium as exact synonyms, yes MA treats these as distinct; see also: transitional epithelium vs urothelium - MP + MP @@ -276770,7 +276956,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -277941,7 +278127,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -278108,7 +278294,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -278255,7 +278441,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -283404,7 +283590,7 @@ plexiform layer using GABA. A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII - FEED:rd + FEED:rd @@ -283638,7 +283824,7 @@ plexiform layer using GABA. - FEED + FEED Wikipedia @@ -283663,7 +283849,7 @@ plexiform layer using GABA. The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] 2012-07-02 - FEED + FEED http://www.feedexp.org @@ -283756,14 +283942,14 @@ plexiform layer using GABA. - FEED + FEED Wikipedia A muscle innervated by a facial nerve. - FEED:rd + FEED:rd @@ -288231,7 +288417,7 @@ plexiform layer using GABA. basi paired exo and supra occipital bones - MA-modified + MA-modified @@ -290698,7 +290884,7 @@ plexiform layer using GABA. A muscular organ in the floor of the mouth. - FEED:rd + FEED:rd @@ -290836,7 +291022,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -293663,7 +293849,7 @@ plexiform layer using GABA. VHOG:0000101 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -294256,7 +294442,7 @@ plexiform layer using GABA. VHOG:0000102 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -294418,7 +294604,7 @@ plexiform layer using GABA. MP treats posterior uvea and optic choroid as distinct - MP + MP @@ -295991,7 +296177,7 @@ plexiform layer using GABA. NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030] - NIF + NIF @@ -301876,7 +302062,7 @@ plexiform layer using GABA. The most anterior region the brain including both the telencephalon and diencephalon. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -311390,7 +311576,7 @@ plexiform layer using GABA. Muscle tissue that contains fibers that are divided by transverse bands into striations. CL:0000737 GOC:dph - GOC:mtg_muscle + GOC:mtg_muscle @@ -313695,7 +313881,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -320516,7 +320702,7 @@ plexiform layer using GABA. VHOG:0000141 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -320761,7 +320947,7 @@ plexiform layer using GABA. VHOG:0000142 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -323333,7 +323519,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -324263,7 +324449,7 @@ plexiform layer using GABA. The definition was adapted from the NIFSTD class which has been retired. It has been generalized so it is applicable to various different kinds of olfactory tracts found in different taxa. - cjm + cjm ISBN:0471888893 @@ -326576,7 +326762,7 @@ plexiform layer using GABA. nlx_anat_101177 seems to have been lost in the transition from NIFGA to Neurolex - NIF + NIF https://github.com/SciCrunch/NIF-Ontology/issues/83 @@ -330742,7 +330928,7 @@ plexiform layer using GABA. AAO:0010551 - BTO:0000047 + BTO:0000047 CALOHA:TS-0016 EFO:0000238 EMAPA:18426 @@ -330807,7 +330993,7 @@ plexiform layer using GABA. Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. - BTO:0000047 + BTO:0000047 @@ -330852,19 +331038,19 @@ plexiform layer using GABA. adrenal - BTO:0000047 + BTO:0000047 adrenal capsule - BTO:0000047 + BTO:0000047 atrabiliary capsule - BTO:0000047 + BTO:0000047 @@ -330876,13 +331062,13 @@ plexiform layer using GABA. epinephros - BTO:0000047 + BTO:0000047 glandula suprarenalis - BTO:0000047 + BTO:0000047 @@ -330895,7 +331081,7 @@ plexiform layer using GABA. suprarenal capsule - BTO:0000047 + BTO:0000047 @@ -331440,7 +331626,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -332634,7 +332820,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -341063,7 +341249,7 @@ plexiform layer using GABA. in NIFSTD this is the mereological sum of the individual complexes - in MA it is the superclass - NIF + NIF @@ -343768,7 +343954,7 @@ plexiform layer using GABA. MP defines as epithelial sac, but EHDAA defines as multi-tissue; See https://github.com/obophenotype/uberon/issues/1305 - MP + MP @@ -346177,7 +346363,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -346491,7 +346677,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -347815,7 +348001,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010365 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -347927,7 +348113,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010366 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -348041,7 +348227,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010368 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -348312,7 +348498,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010418 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -348449,7 +348635,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010419 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -348575,7 +348761,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010420 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -348708,7 +348894,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010422 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -375170,7 +375356,7 @@ plexiform layer using GABA. Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. FMA:71385 - ISBN:3110148986 + ISBN:3110148986 @@ -376064,7 +376250,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -376080,7 +376266,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -383488,7 +383674,7 @@ plexiform layer using GABA. MP defines this in a may more appropriate to somatosensory cortex - MP + MP @@ -384614,7 +384800,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -389421,7 +389607,7 @@ plexiform layer using GABA. NIF divides this into main and accessory - NIF + NIF @@ -401088,7 +401274,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -405067,7 +405253,7 @@ plexiform layer using GABA. Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA] - FMA + FMA FMA:45626 @@ -432329,7 +432515,7 @@ plexiform layer using GABA. Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. - ISBN:0683400088 + ISBN:0683400088 MP:0011260 @@ -435542,7 +435728,7 @@ plexiform layer using GABA. Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) BAMS:Or - BIRNLEX:4113 + BIRNLEX:4113 EMAPA:35412 FMA:83893 MA:0000958 @@ -435563,43 +435749,43 @@ plexiform layer using GABA. Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) - BIRNLEX:4113 + BIRNLEX:4113 http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=157 - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 stratum oriens - BIRNLEX:4113 + BIRNLEX:4113 @@ -436300,7 +436486,7 @@ plexiform layer using GABA. FMA:83900 MA:0000897 NCIT:C33137 - NLXANAT:090807 + NLXANAT:090807 PBA:294021786 UMLS:C1709063 cerebral cortex, layer 1 @@ -436336,7 +436522,7 @@ plexiform layer using GABA. The most superficial layer of the neocortex characterized by a paucity of cell bodies. - NLXANAT:090807 + NLXANAT:090807 @@ -436362,13 +436548,13 @@ plexiform layer using GABA. layer 1 of neocortex - NLXANAT:090807 + NLXANAT:090807 layer I of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -436392,37 +436578,37 @@ plexiform layer using GABA. molecular layer of neocortex - NLXANAT:090807 + NLXANAT:090807 neocortex layer 1 - NLXANAT:090807 + NLXANAT:090807 neocortex layer I - NLXANAT:090807 + NLXANAT:090807 neocortex molecular layer - NLXANAT:090807 + NLXANAT:090807 neocortex plexiform layer - NLXANAT:090807 + NLXANAT:090807 plexiform layer of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -436481,7 +436667,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -436610,7 +436796,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -436775,7 +436961,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -436939,7 +437125,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -444450,7 +444636,7 @@ plexiform layer using GABA. optic nerve (II) foramen ZFA:0005428 - ZFIN:ZDB-PUB-961014-192 + ZFIN:ZDB-PUB-961014-192 @@ -446163,7 +446349,7 @@ plexiform layer using GABA. isa cell condensation in VSAO; has_part chondroblast in AEO - VSAO + VSAO @@ -449249,7 +449435,7 @@ plexiform layer using GABA. The left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]. - MP:0010566 + MP:0010566 @@ -449281,7 +449467,7 @@ plexiform layer using GABA. left bundle branch - MP:0010566 + MP:0010566 @@ -449293,25 +449479,25 @@ plexiform layer using GABA. left bundle of atrioventricular bundle - MP:0010566 + MP:0010566 left crus of atrioventricular bundle - MP:0010566 + MP:0010566 left posterior branch - MP:0010566 + MP:0010566 left posterior bundle - MP:0010566 + MP:0010566 @@ -450214,7 +450400,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000092 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -450340,7 +450526,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -450437,7 +450623,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000082 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -453840,7 +454026,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced ZFA @@ -456360,7 +456546,7 @@ plexiform layer using GABA. - FMA-abduced + FMA-abduced @@ -462519,7 +462705,7 @@ plexiform layer using GABA. VHOG:0000244 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -464035,7 +464221,7 @@ plexiform layer using GABA. An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -467752,7 +467938,7 @@ plexiform layer using GABA. enveloping layer - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -469758,14 +469944,14 @@ plexiform layer using GABA. - FBbt + FBbt AEO - FBbt + FBbt @@ -476426,7 +476612,7 @@ plexiform layer using GABA. Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs.[FMA] - FMA + FMA FMA:45621 @@ -476648,7 +476834,7 @@ plexiform layer using GABA. VSAO labels this term 'pharyngeal arch' (2012-06-01) - however, it clearly means pharyngeal arch skeleton. - VSAO + VSAO @@ -476904,7 +477090,7 @@ plexiform layer using GABA. Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -482113,7 +482299,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -483823,7 +484009,7 @@ plexiform layer using GABA. - MA-modified + MA-modified @@ -486399,7 +486585,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -488877,7 +489063,7 @@ plexiform layer using GABA. - FBbt + FBbt @@ -489358,7 +489544,7 @@ plexiform layer using GABA. - ISBN:1607950324 + ISBN:1607950324 @@ -494110,7 +494296,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -497428,7 +497614,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -497846,7 +498032,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -498247,7 +498433,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -498384,7 +498570,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -498798,7 +498984,7 @@ plexiform layer using GABA. antebrachium skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -499406,7 +499592,7 @@ plexiform layer using GABA. crus skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -503874,7 +504060,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -504239,13 +504425,13 @@ plexiform layer using GABA. - FBbt + FBbt - FBbt + FBbt @@ -505896,7 +506082,7 @@ plexiform layer using GABA. EMAPA - FMA-abduced + FMA-abduced ZFA-abduced @@ -509546,7 +509732,7 @@ plexiform layer using GABA. A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -509674,13 +509860,13 @@ plexiform layer using GABA. A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni digitopodium - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -509742,7 +509928,7 @@ plexiform layer using GABA. A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -509787,7 +509973,7 @@ plexiform layer using GABA. A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520206,41 +520392,41 @@ plexiform layer using GABA. isthmus cinguli - NeuroNames:163 + NeuroNames:163 isthmus gyri cingulatus - NeuroNames:163 + NeuroNames:163 isthmus gyri cinguli - NeuroNames:163 + NeuroNames:163 isthmus of gyrus fornicatus - NeuroNames:163 + NeuroNames:163 isthmus of the cingulate gyrus - NeuroNames:163 + NeuroNames:163 isthmus-2 - NeuroNames:163 + NeuroNames:163 @@ -533532,7 +533718,7 @@ plexiform layer using GABA. - nlx + nlx @@ -533543,7 +533729,7 @@ plexiform layer using GABA. - nlx + nlx @@ -535742,7 +535928,7 @@ plexiform layer using GABA. The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts. BTO:0001513 - MGI:cs + MGI:cs @@ -542840,7 +543026,7 @@ plexiform layer using GABA. A collection of hairs that grows on the external ear. - UBERON:EJS + UBERON:EJS @@ -542890,7 +543076,7 @@ plexiform layer using GABA. A zone of skin that is part of the face. - UBERON:EJS + UBERON:EJS @@ -555198,8 +555384,8 @@ plexiform layer using GABA. true - MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z - infer input from direct reg + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg diff --git a/cl-simple.json b/cl-simple.json index 92b40390c..ec63d8d4d 100644 --- a/cl-simple.json +++ b/cl-simple.json @@ -2065,6 +2065,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002420" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000084", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009031" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000085", "pred": "is_a", @@ -4785,6 +4790,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001201" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000236", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009032" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000237", "pred": "is_a", @@ -5855,6 +5865,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001056" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000451", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009034" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000451", "pred": "is_a", @@ -8670,6 +8685,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000975" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000786", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009033" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000787", "pred": "is_a", @@ -15745,6 +15765,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0009025", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0009028", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -16615,6 +16640,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1000405", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1000405", "pred": "is_a", @@ -17780,6 +17810,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002680" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001516", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001567", "pred": "is_a", @@ -17805,6 +17840,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002624" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001585", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001585", "pred": "is_a", @@ -78591,6 +78631,240 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009029", + "lbl": "mesothelial cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A mesothelial cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix mesothelial cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009030", + "lbl": "enteroendocrine cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "An intestinal enteroendocrine cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix enteroendocrine cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009031", + "lbl": "T cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A T cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "T cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "T cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix T cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009032", + "lbl": "B cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A B cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "B cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "B cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix B cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009033", + "lbl": "plasma cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A plasma cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix plasma cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009034", + "lbl": "dendritic cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A dendritic cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/cl#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix dendritic cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010000", "lbl": "keratinized cell of hair follicle", @@ -93042,7 +93316,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023042", - "lbl": "L6 corticothalamic-projecting projecting glutamatergic cortical neuron", + "lbl": "L6 corticothalamic-projecting glutamatergic cortical neuron", "meta": { "basicPropertyValues": [ { @@ -93106,7 +93380,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023044", - "lbl": "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -93137,7 +93411,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023045", - "lbl": "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -93382,7 +93656,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023053", - "lbl": "spinal interneuron syanpsing Betz cell", + "lbl": "spinal interneuron synapsing Betz cell", "meta": { "basicPropertyValues": [ { diff --git a/cl-simple.obo b/cl-simple.obo index 3f31af98a..41c496e54 100644 --- a/cl-simple.obo +++ b/cl-simple.obo @@ -18941,6 +18941,74 @@ is_a: CL:0009016 ! intestinal crypt stem cell of large intestine is_a: CL:1000405 ! epithelial cell of appendix created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009029 +name: mesothelial cell of appendix +def: "A mesothelial cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix mesothelial cell" EXACT [] +synonym: "mesothelial cell of appendix vermiformis" EXACT [] +synonym: "mesothelial cell of vermiform appendix" EXACT [] +is_a: CL:0009025 ! mesothelial cell of large intestine +is_a: CL:1000405 ! epithelial cell of appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009030 +name: enteroendocrine cell of appendix +def: "An intestinal enteroendocrine cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix enteroendocrine cell" EXACT [] +synonym: "enteroendocrine cell of appendix vermiformis" EXACT [] +synonym: "enteroendocrine cell of vermiform appendix" EXACT [] +is_a: CL:1001516 ! intestinal enteroendocrine cell +is_a: CL:1001585 ! appendix glandular cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009031 +name: T cell of appendix +def: "A T cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix T cell" EXACT [] +synonym: "T cell of appendix vermiformis" EXACT [] +synonym: "T cell of vermiform appendix" EXACT [] +is_a: CL:0000084 ! T cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009032 +name: B cell of appendix +def: "A B cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix B cell" EXACT [] +synonym: "B cell of appendix vermiformis" EXACT [] +synonym: "B cell of vermiform appendix" EXACT [] +is_a: CL:0000236 ! B cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009033 +name: plasma cell of appendix +def: "A plasma cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix plasma cell" EXACT [] +synonym: "plasma cell of appendix vermiformis" EXACT [] +synonym: "plasma cell of vermiform appendix" EXACT [] +is_a: CL:0000786 ! plasma cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009034 +name: dendritic cell of appendix +def: "A dendritic cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix dendritic cell" EXACT [] +synonym: "dendritic cell of appendix vermiformis" EXACT [] +synonym: "dendritic cell of vermiform appendix" EXACT [] +is_a: CL:0000451 ! dendritic cell +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -24018,7 +24086,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023042 -name: L6 corticothalamic-projecting projecting glutamatergic cortical neuron +name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A corticothalamic-projecting neuron with a soma found in cortical layer 6." [DOI:10.1101/2020.10.19.343129] subset: BDS_subset synonym: "L6 CT" EXACT [] @@ -24037,7 +24105,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023044 -name: non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "non-MY ET MOp (Mus)" EXACT [] @@ -24046,7 +24114,7 @@ property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-00 [Term] id: CL:4023045 -name: medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "MY ET MOp (Mus)" EXACT [] @@ -24122,7 +24190,7 @@ property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:4023053 -name: spinal interneuron syanpsing Betz cell +name: spinal interneuron synapsing Betz cell def: "A Betz cell that syanpses with spinal interneurons." [DOI:10.1101/2020.03.31.016972, PMID:18558853] is_a: CL:0008049 ! Betz cell relationship: RO:0002120 CL:0005000 ! synapsed to spinal cord interneuron @@ -24144,7 +24212,7 @@ name: corticothalamic VAL/VM projecting glutamatergic neuron of the primary moto def: "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index." [PMID:20556241, PMID:9236245] subset: BDS_subset synonym: "CT VAL/VM MOp (Mus)" EXACT [] -is_a: CL:4023042 ! L6 corticothalamic-projecting projecting glutamatergic cortical neuron +is_a: CL:4023042 ! L6 corticothalamic-projecting glutamatergic cortical neuron property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-7258-9596 [Term] diff --git a/cl-simple.owl b/cl-simple.owl index ef1a5db4c..f38919c97 100644 --- a/cl-simple.owl +++ b/cl-simple.owl @@ -43826,6 +43826,140 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix mesothelial cell + mesothelial cell of appendix vermiformis + mesothelial cell of vermiform appendix + CL:0009029 + + mesothelial cell of appendix + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix enteroendocrine cell + enteroendocrine cell of appendix vermiformis + enteroendocrine cell of vermiform appendix + CL:0009030 + + enteroendocrine cell of appendix + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + T cell of appendix vermiformis + T cell of vermiform appendix + appendix T cell + CL:0009031 + + T cell of appendix + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + B cell of appendix vermiformis + B cell of vermiform appendix + appendix B cell + CL:0009032 + + B cell of appendix + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix plasma cell + plasma cell of appendix vermiformis + plasma cell of vermiform appendix + CL:0009033 + + plasma cell of appendix + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0002-2825-0621 + appendix dendritic cell + dendritic cell of appendix vermiformis + dendritic cell of vermiform appendix + CL:0009034 + + dendritic cell of appendix + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + @@ -55457,7 +55591,7 @@ plexiform layer using GABA. L6 CT CL:4023042 - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -55499,7 +55633,7 @@ plexiform layer using GABA. non-MY ET MOp (Mus) CL:4023044 - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -55521,7 +55655,7 @@ plexiform layer using GABA. MY ET MOp (Mus) CL:4023045 - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -55707,7 +55841,7 @@ plexiform layer using GABA. CL:4023053 - spinal interneuron syanpsing Betz cell + spinal interneuron synapsing Betz cell @@ -56399,9 +56533,9 @@ plexiform layer using GABA. - + U only_in_taxon T: U is a feature found in only in organisms of species of taxon T. The feature cannot be found in an organism of any species outside of (not subsumed by) that taxon. Down-propagates in U hierarchy, up-propagates in T hierarchy (species taxonomy). Implies applicable_to_taxon. diff --git a/cl.json b/cl.json index 9ee0c964e..45c8dc198 100644 --- a/cl.json +++ b/cl.json @@ -6219,6 +6219,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002420" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000084", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009031" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000085", "pred": "is_a", @@ -8939,6 +8944,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001201" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000236", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009032" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000237", "pred": "is_a", @@ -10009,6 +10019,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0001056" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000451", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009034" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000451", "pred": "is_a", @@ -12824,6 +12839,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000975" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000786", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009033" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000787", "pred": "is_a", @@ -19899,6 +19919,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0009025", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0009028", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -20769,6 +20794,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0009028" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1000405", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009029" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1000405", "pred": "is_a", @@ -21934,6 +21964,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002680" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001516", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001567", "pred": "is_a", @@ -21959,6 +21994,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0002624" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_1001585", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0009030" + }, { "obj": "http://purl.obolibrary.org/obo/CL_1001585", "pred": "is_a", @@ -80649,6 +80689,26 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002179", "sub": "http://purl.obolibrary.org/obo/UBERON_0001219" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009031" + }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009032" + }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009033" + }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_0009034" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0001154", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -154517,6 +154577,78 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009029", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000077" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009030", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_1001516" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009031", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000084" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009032", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000236" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009033", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000786" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_0009034", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000451" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001154", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_0010001", "genusIds": [ @@ -279058,6 +279190,240 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009029", + "lbl": "mesothelial cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A mesothelial cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix mesothelial cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "mesothelial cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009030", + "lbl": "enteroendocrine cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "An intestinal enteroendocrine cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix enteroendocrine cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "enteroendocrine cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009031", + "lbl": "T cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A T cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "T cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "T cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix T cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009032", + "lbl": "B cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A B cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "B cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "B cell of vermiform appendix", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "appendix B cell", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009033", + "lbl": "plasma cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A plasma cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix plasma cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "plasma cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_0009034", + "lbl": "dendritic cell of appendix", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-2825-0621" + } + ], + "definition": { + "val": "A dendritic cell that is located in a vermiform appendix.", + "xrefs": [ + "http://orcid.org/0000-0003-3440-1876" + ] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/pato#location_grouping" + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "appendix dendritic cell", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of appendix vermiformis", + "xrefs": [] + }, + { + "pred": "hasExactSynonym", + "val": "dendritic cell of vermiform appendix", + "xrefs": [] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010000", "lbl": "keratinized cell of hair follicle", @@ -293510,7 +293876,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023042", - "lbl": "L6 corticothalamic-projecting projecting glutamatergic cortical neuron", + "lbl": "L6 corticothalamic-projecting glutamatergic cortical neuron", "meta": { "basicPropertyValues": [ { @@ -293574,7 +293940,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023044", - "lbl": "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -293605,7 +293971,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023045", - "lbl": "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", + "lbl": "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)", "meta": { "basicPropertyValues": [ { @@ -293850,7 +294216,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_4023053", - "lbl": "spinal interneuron syanpsing Betz cell", + "lbl": "spinal interneuron synapsing Betz cell", "meta": { "basicPropertyValues": [ { diff --git a/cl.obo b/cl.obo index 955412e7b..ea0c3acc1 100644 --- a/cl.obo +++ b/cl.obo @@ -25394,6 +25394,90 @@ intersection_of: part_of UBERON:0013486 ! crypt of Lieberkuhn of appendix relationship: part_of UBERON:0013486 ! crypt of Lieberkuhn of appendix created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009029 +name: mesothelial cell of appendix +def: "A mesothelial cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix mesothelial cell" EXACT [] +synonym: "mesothelial cell of appendix vermiformis" EXACT [] +synonym: "mesothelial cell of vermiform appendix" EXACT [] +is_a: CL:0009025 ! mesothelial cell of large intestine +is_a: CL:1000405 ! epithelial cell of appendix +intersection_of: CL:0000077 ! mesothelial cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009030 +name: enteroendocrine cell of appendix +def: "An intestinal enteroendocrine cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix enteroendocrine cell" EXACT [] +synonym: "enteroendocrine cell of appendix vermiformis" EXACT [] +synonym: "enteroendocrine cell of vermiform appendix" EXACT [] +is_a: CL:1001516 ! intestinal enteroendocrine cell +is_a: CL:1001585 ! appendix glandular cell +intersection_of: CL:1001516 ! intestinal enteroendocrine cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009031 +name: T cell of appendix +def: "A T cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix T cell" EXACT [] +synonym: "T cell of appendix vermiformis" EXACT [] +synonym: "T cell of vermiform appendix" EXACT [] +is_a: CL:0000084 ! T cell +intersection_of: CL:0000084 ! T cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009032 +name: B cell of appendix +def: "A B cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix B cell" EXACT [] +synonym: "B cell of appendix vermiformis" EXACT [] +synonym: "B cell of vermiform appendix" EXACT [] +is_a: CL:0000236 ! B cell +intersection_of: CL:0000236 ! B cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009033 +name: plasma cell of appendix +def: "A plasma cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix plasma cell" EXACT [] +synonym: "plasma cell of appendix vermiformis" EXACT [] +synonym: "plasma cell of vermiform appendix" EXACT [] +is_a: CL:0000786 ! plasma cell +intersection_of: CL:0000786 ! plasma cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009034 +name: dendritic cell of appendix +def: "A dendritic cell that is located in a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: location_grouping +synonym: "appendix dendritic cell" EXACT [] +synonym: "dendritic cell of appendix vermiformis" EXACT [] +synonym: "dendritic cell of vermiform appendix" EXACT [] +is_a: CL:0000451 ! dendritic cell +intersection_of: CL:0000451 ! dendritic cell +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -31817,7 +31901,7 @@ relationship: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023042 -name: L6 corticothalamic-projecting projecting glutamatergic cortical neuron +name: L6 corticothalamic-projecting glutamatergic cortical neuron def: "A corticothalamic-projecting neuron with a soma found in cortical layer 6." [DOI:10.1101/2020.10.19.343129] subset: BDS_subset synonym: "L6 CT" EXACT [] @@ -31838,7 +31922,7 @@ relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex [Term] id: CL:4023044 -name: non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that does not project to the medulla. Non-MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "non-MY ET MOp (Mus)" EXACT [] @@ -31849,7 +31933,7 @@ relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex [Term] id: CL:4023045 -name: medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) +name: medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) def: "An extratelencephalic-projecting glutamatergic neuron located in layer 5b of the primary motor cortex that projects to the medulla. MY ET cells are large, big-tufted cells with the apical dendrite often bifurcating close to the soma, suggesting they are corticospinal cells. MY ET cells have bigger hyperpolarization sag, lower input resistance, and smaller AP width, compared to L5 IT neurons." [DOI:10.1101/2020.10.19.343129, PMID:24137110, PMID:9236245] subset: BDS_subset synonym: "MY ET MOp (Mus)" EXACT [] @@ -31939,7 +32023,7 @@ relationship: RO:0002120 CL:0008039 ! synapsed to lower motor neuron [Term] id: CL:4023053 -name: spinal interneuron syanpsing Betz cell +name: spinal interneuron synapsing Betz cell def: "A Betz cell that syanpses with spinal interneurons." [DOI:10.1101/2020.03.31.016972, PMID:18558853] is_a: CL:0008049 ! Betz cell relationship: dc-creator http://orcid.org/0000-0001-7258-9596 @@ -31961,7 +32045,7 @@ name: corticothalamic VAL/VM projecting glutamatergic neuron of the primary moto def: "A corticothalamic-projecting glutamatergic neuron that is located in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology and mostly untufted apical dendrites terminating in midcortical layers. CT VAL/VM cells have a near tonic firing pattern and are distinguished from L6 IT neurons by a lower inter-spike interval adaptation index." [PMID:20556241, PMID:9236245] subset: BDS_subset synonym: "CT VAL/VM MOp (Mus)" EXACT [] -is_a: CL:4023042 ! L6 corticothalamic-projecting projecting glutamatergic cortical neuron +is_a: CL:4023042 ! L6 corticothalamic-projecting glutamatergic cortical neuron relationship: bearer_of PATO:0070019 ! untufted pyramidal morphology relationship: dc-creator http://orcid.org/0000-0001-7258-9596 relationship: in_taxon NCBITaxon:10090 ! Mus musculus @@ -59157,8 +59241,8 @@ id: NCBITaxon:4751 name: Fungi namespace: ncbi_taxonomy synonym: "fungal-" RELATED PRO-short-label [PRO:DAN] -synonym: "fungi" RELATED in_part [] synonym: "fungi" RELATED blast_name [] +synonym: "fungi" RELATED in_part [] synonym: "Mycota" RELATED genbank_synonym [] xref: GC_ID:1 xref: PMID:11062127 @@ -81301,8 +81385,8 @@ def: "external genital organs of the female mammal[WP]." [http://en.wikipedia.or subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "female pudendum" EXACT [BTO:0003101] synonym: "female pudendum" EXACT [FMA:20462] +synonym: "female pudendum" EXACT [BTO:0003101] synonym: "mammalian vulva" EXACT [] synonym: "puboperineal region" EXACT [FMA:20462] synonym: "pudendum" RELATED [BTO:0003101] @@ -95791,8 +95875,8 @@ namespace: uberon def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm] subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] -synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus] +synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] xref: Brachial:plexus xref: EHDAA2:0000180 xref: EHDAA:3782 diff --git a/cl.owl b/cl.owl index 4c22af588..8b8399db0 100644 --- a/cl.owl +++ b/cl.owl @@ -5040,7 +5040,7 @@ For example, A and B may be gene products and binding of B by A positively regul immediately transforms from - SIO:000658 + SIO:000658 @@ -35192,7 +35192,7 @@ radial glial cells acting as neural progenitors throughout life. GO_REF:0000031 PMID:11532393 PMID:12457618 - PMID:15032583 + PMID:15032583 PMID:15766674 @@ -35200,7 +35200,7 @@ radial glial cells acting as neural progenitors throughout life. NKP PMID:12457618 - PMID:15032583 + PMID:15032583 PMID:15766674 @@ -83281,6 +83281,224 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + + + + + + A mesothelial cell that is located in a vermiform appendix. + + appendix mesothelial cell + mesothelial cell of appendix vermiformis + mesothelial cell of vermiform appendix + + mesothelial cell of appendix + + + + + A mesothelial cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + + appendix enteroendocrine cell + enteroendocrine cell of appendix vermiformis + enteroendocrine cell of vermiform appendix + + enteroendocrine cell of appendix + + + + + An intestinal enteroendocrine cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A T cell that is located in a vermiform appendix. + + T cell of appendix vermiformis + T cell of vermiform appendix + appendix T cell + + T cell of appendix + + + + + A T cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A B cell that is located in a vermiform appendix. + + B cell of appendix vermiformis + B cell of vermiform appendix + appendix B cell + + B cell of appendix + + + + + A B cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A plasma cell that is located in a vermiform appendix. + + appendix plasma cell + plasma cell of appendix vermiformis + plasma cell of vermiform appendix + + plasma cell of appendix + + + + + A plasma cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + + + + + + + + + + + + + + + + + + + + + + + A dendritic cell that is located in a vermiform appendix. + + appendix dendritic cell + dendritic cell of appendix vermiformis + dendritic cell of vermiform appendix + + dendritic cell of appendix + + + + + A dendritic cell that is located in a vermiform appendix. + http://orcid.org/0000-0003-3440-1876 + + + + @@ -103084,7 +103302,7 @@ plexiform layer using GABA. L6 CT - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -103148,7 +103366,7 @@ plexiform layer using GABA. non-MY ET MOp (Mus) - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -103187,7 +103405,7 @@ plexiform layer using GABA. MY ET MOp (Mus) - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -103431,7 +103649,7 @@ plexiform layer using GABA. - spinal interneuron syanpsing Betz cell + spinal interneuron synapsing Betz cell @@ -114439,7 +114657,7 @@ plexiform layer using GABA. A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. - GOC:pdt + GOC:pdt @@ -114805,7 +115023,7 @@ plexiform layer using GABA. A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). - GOC:pdt + GOC:pdt NIF_Subcellular:sao1337158144 @@ -115625,7 +115843,7 @@ plexiform layer using GABA. The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. - ISBN:0192800981 + ISBN:0192800981 @@ -116452,7 +116670,7 @@ plexiform layer using GABA. A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. GOC:cjm - GOC:dhl + GOC:dhl GOC:ecd GOC:go_curators GOC:mtg_apoptosis @@ -118379,7 +118597,7 @@ plexiform layer using GABA. A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -119508,7 +119726,7 @@ plexiform layer using GABA. Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. GOC:dgh GOC:go_curators - ISBN:0471245208 + ISBN:0471245208 ISBN:0721662544 @@ -125017,7 +125235,7 @@ plexiform layer using GABA. The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties. - ISBN:0192800981 + ISBN:0192800981 @@ -125112,7 +125330,7 @@ plexiform layer using GABA. RBC differentiation - CL:0000232 + CL:0000232 @@ -125125,7 +125343,7 @@ plexiform layer using GABA. red blood cell differentiation - CL:0000232 + CL:0000232 @@ -126868,7 +127086,7 @@ plexiform layer using GABA. A vesicle found in the cytoplasm of a cell. GOC:ai GOC:mah - GOC:vesicles + GOC:vesicles @@ -127118,7 +127336,7 @@ plexiform layer using GABA. Any small, fluid-filled, spherical organelle enclosed by membrane. GOC:mah GOC:pz - GOC:vesicles + GOC:vesicles @@ -128925,7 +129143,7 @@ plexiform layer using GABA. The appearance of type I interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. GOC:add ISBN:0126896631 - PMID:15546383 + PMID:15546383 PMID:16681834 @@ -128960,7 +129178,7 @@ plexiform layer using GABA. The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -129382,7 +129600,7 @@ plexiform layer using GABA. Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -129968,7 +130186,7 @@ plexiform layer using GABA. Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -130628,7 +130846,7 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -133160,19 +133378,19 @@ plexiform layer using GABA. Any process of regulating the production and elimination of erythrocytes within an organism. GOC:add PMID:10694114 - PMID:14754397 + PMID:14754397 RBC homeostasis - CL:0000232 + CL:0000232 red blood cell homeostasis - CL:0000232 + CL:0000232 @@ -133202,25 +133420,25 @@ plexiform layer using GABA. The selective elimination of erythrocytes from the body by autoregulatory mechanisms. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 RBC clearance - CL:0000232 + CL:0000232 red blood cell clearance - CL:0000232 + CL:0000232 neocytolysis - PMID:14754397 + PMID:14754397 @@ -133367,25 +133585,25 @@ plexiform layer using GABA. Any process that modulates the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 regulation of RBC clearance - CL:0000232 + CL:0000232 regulation of red blood cell clearance - CL:0000232 + CL:0000232 regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -133427,25 +133645,25 @@ plexiform layer using GABA. Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 negative regulation of RBC clearance - CL:0000232 + CL:0000232 negative regulation of red blood cell clearance - CL:0000232 + CL:0000232 negative regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -133487,25 +133705,25 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 positive regulation of RBC clearance - CL:0000232 + CL:0000232 positive regulation of red blood cell clearance - CL:0000232 + CL:0000232 positive regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -137385,7 +137603,7 @@ plexiform layer using GABA. The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte. - GOC:rk + GOC:rk PMID:14685684 @@ -138827,7 +139045,7 @@ plexiform layer using GABA. Any process evolved to enable an interaction with an organism of a different species. - GOC:cc + GOC:cc @@ -141035,13 +141253,13 @@ plexiform layer using GABA. regulation of RBC differentiation - CL:0000232 + CL:0000232 regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -141089,13 +141307,13 @@ plexiform layer using GABA. negative regulation of RBC differentiation - CL:0000232 + CL:0000232 negative regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -141144,13 +141362,13 @@ plexiform layer using GABA. positive regulation of RBC differentiation - CL:0000232 + CL:0000232 positive regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -153161,7 +153379,7 @@ plexiform layer using GABA. A compound molecular function in which an effector function is controlled by one or more regulatory components. GOC:dos - GOC:pdt + GOC:pdt @@ -153191,7 +153409,7 @@ plexiform layer using GABA. The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way. - GOC:mtg_MIT_16mar07 + GOC:mtg_MIT_16mar07 GOC:vw @@ -158093,7 +158311,7 @@ plexiform layer using GABA. extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -158276,7 +158494,7 @@ plexiform layer using GABA. Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). - GOC:dhl + GOC:dhl @@ -159269,7 +159487,7 @@ plexiform layer using GABA. The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. - CL:0000451 + CL:0000451 GOC:pr @@ -159350,7 +159568,7 @@ plexiform layer using GABA. Any process that activates or increases the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. GOC:BHF - GOC:sjp + GOC:sjp PMID:18550748 @@ -159371,7 +159589,7 @@ plexiform layer using GABA. Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure. - GOC:sjw + GOC:sjw PMID:7583672 @@ -159535,7 +159753,7 @@ plexiform layer using GABA. Any vesicle that is part of the intracellular region. - GOC:vesicles + GOC:vesicles @@ -170047,7 +170265,7 @@ plexiform layer using GABA. regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -170116,7 +170334,7 @@ plexiform layer using GABA. negative regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -170197,7 +170415,7 @@ plexiform layer using GABA. positive regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -170568,7 +170786,7 @@ plexiform layer using GABA. microparticle - GOC:vesicles + GOC:vesicles @@ -183127,7 +183345,7 @@ plexiform layer using GABA. conformation - VT:1000738 + VT:1000738 @@ -183432,7 +183650,7 @@ plexiform layer using GABA. A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. - Wikipedia:http://en.wikipedia.org/wiki/Ploidy + Wikipedia:http://en.wikipedia.org/wiki/Ploidy @@ -183452,7 +183670,7 @@ plexiform layer using GABA. A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. - Wikipedia:http://en.wikipedia.org/wiki/Haploid + Wikipedia:http://en.wikipedia.org/wiki/Haploid @@ -238861,7 +239079,7 @@ plexiform layer using GABA. A light sensing organ composed of ommatidia - FB:gg + FB:gg @@ -239005,7 +239223,7 @@ plexiform layer using GABA. VHOG:0000275 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -243460,7 +243678,7 @@ plexiform layer using GABA. bilaminary germ disc - ISBN:9780878932504 + ISBN:9780878932504 @@ -246350,7 +246568,7 @@ plexiform layer using GABA. - FMA-abduced + FMA-abduced @@ -250508,7 +250726,7 @@ plexiform layer using GABA. FEED:rd - ISBN:1607950324 + ISBN:1607950324 @@ -258240,7 +258458,7 @@ plexiform layer using GABA. VHOG:0000169 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -258402,7 +258620,7 @@ plexiform layer using GABA. VHOG:0000229 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -259462,7 +259680,7 @@ plexiform layer using GABA. TAO:0000367 UMLS:C0022417 VHOG:0001276 - VSAO:0000101 + VSAO:0000101 XAO:0000171 ZFA:0001596 galen:Joint @@ -259484,14 +259702,14 @@ plexiform layer using GABA. GO_REF:0000034 - VSAO:0000101 + VSAO:0000101 Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] 2012-08-14 - VSAO:0000101 + VSAO:0000101 VSAO PSPUB:0000170 @@ -259508,14 +259726,14 @@ plexiform layer using GABA. articulation - VSAO:0000101 + VSAO:0000101 joint FMA:7490 - VSAO:0000101 + VSAO:0000101 @@ -259595,7 +259813,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -261087,7 +261305,7 @@ plexiform layer using GABA. AAO:0010788 - BTO:0001234 + BTO:0001234 CALOHA:TS-0919 EFO:0000986 EMAPA:19180 @@ -261126,7 +261344,7 @@ plexiform layer using GABA. Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct. - BTO:0001234 + BTO:0001234 @@ -261158,13 +261376,13 @@ plexiform layer using GABA. glandula seminalis - BTO:0001234 + BTO:0001234 glandula vesiculosa - BTO:0001234 + BTO:0001234 @@ -261176,7 +261394,7 @@ plexiform layer using GABA. vesicula seminalis - BTO:0001234 + BTO:0001234 @@ -261813,7 +262031,7 @@ plexiform layer using GABA. Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. - FB:gg + FB:gg NLM:alimentary+system @@ -262390,7 +262608,7 @@ plexiform layer using GABA. BIRNLEX:844 ISBN:0-14-051288-8 - ISBN:3110148986 + ISBN:3110148986 NLM:nervous+system WB:rynl ZFIN:curator @@ -262525,7 +262743,7 @@ plexiform layer using GABA. - FBbt + FBbt cjm @@ -262827,7 +263045,7 @@ plexiform layer using GABA. - FBbt + FBbt @@ -278238,7 +278456,7 @@ plexiform layer using GABA. MP treats ureter urothelium and ureter luminal urothelium as exact synonyms, yes MA treats these as distinct; see also: transitional epithelium vs urothelium - MP + MP @@ -286634,14 +286852,14 @@ plexiform layer using GABA. anterior autopodium VSAO:0005020 - VSAO:NI + VSAO:NI manus VSAO:0005020 - VSAO:NI + VSAO:NI @@ -286699,7 +286917,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -286901,7 +287119,7 @@ plexiform layer using GABA. pes VSAO:0005021 - VSAO:NI + VSAO:NI @@ -286909,7 +287127,7 @@ plexiform layer using GABA. posterior autopodium VSAO:0005021 - VSAO:NI + VSAO:NI @@ -287870,7 +288088,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -288037,7 +288255,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -288184,7 +288402,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -293340,7 +293558,7 @@ plexiform layer using GABA. A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII - FEED:rd + FEED:rd @@ -293576,7 +293794,7 @@ plexiform layer using GABA. - FEED + FEED Wikipedia @@ -293601,7 +293819,7 @@ plexiform layer using GABA. The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] 2012-07-02 - FEED + FEED http://www.feedexp.org @@ -293695,14 +293913,14 @@ plexiform layer using GABA. - FEED + FEED Wikipedia A muscle innervated by a facial nerve. - FEED:rd + FEED:rd @@ -298177,7 +298395,7 @@ plexiform layer using GABA. basi paired exo and supra occipital bones - MA-modified + MA-modified @@ -300647,7 +300865,7 @@ plexiform layer using GABA. A muscular organ in the floor of the mouth. - FEED:rd + FEED:rd @@ -300786,7 +301004,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -303617,7 +303835,7 @@ plexiform layer using GABA. VHOG:0000101 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -304210,7 +304428,7 @@ plexiform layer using GABA. VHOG:0000102 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -304372,7 +304590,7 @@ plexiform layer using GABA. MP treats posterior uvea and optic choroid as distinct - MP + MP @@ -305946,7 +306164,7 @@ plexiform layer using GABA. NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030] - NIF + NIF @@ -311836,7 +312054,7 @@ plexiform layer using GABA. The most anterior region the brain including both the telencephalon and diencephalon. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -321360,7 +321578,7 @@ plexiform layer using GABA. Muscle tissue that contains fibers that are divided by transverse bands into striations. CL:0000737 GOC:dph - GOC:mtg_muscle + GOC:mtg_muscle @@ -323665,7 +323883,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -330493,7 +330711,7 @@ plexiform layer using GABA. VHOG:0000141 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -330738,7 +330956,7 @@ plexiform layer using GABA. VHOG:0000142 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -333316,7 +333534,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -334246,7 +334464,7 @@ plexiform layer using GABA. The definition was adapted from the NIFSTD class which has been retired. It has been generalized so it is applicable to various different kinds of olfactory tracts found in different taxa. - cjm + cjm ISBN:0471888893 @@ -336562,7 +336780,7 @@ plexiform layer using GABA. nlx_anat_101177 seems to have been lost in the transition from NIFGA to Neurolex - NIF + NIF https://github.com/SciCrunch/NIF-Ontology/issues/83 @@ -340733,7 +340951,7 @@ plexiform layer using GABA. AAO:0010551 - BTO:0000047 + BTO:0000047 CALOHA:TS-0016 EFO:0000238 EMAPA:18426 @@ -340798,7 +341016,7 @@ plexiform layer using GABA. Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. - BTO:0000047 + BTO:0000047 @@ -340843,19 +341061,19 @@ plexiform layer using GABA. adrenal - BTO:0000047 + BTO:0000047 adrenal capsule - BTO:0000047 + BTO:0000047 atrabiliary capsule - BTO:0000047 + BTO:0000047 @@ -340867,13 +341085,13 @@ plexiform layer using GABA. epinephros - BTO:0000047 + BTO:0000047 glandula suprarenalis - BTO:0000047 + BTO:0000047 @@ -340886,7 +341104,7 @@ plexiform layer using GABA. suprarenal capsule - BTO:0000047 + BTO:0000047 @@ -341432,7 +341650,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -342627,7 +342845,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -351073,7 +351291,7 @@ plexiform layer using GABA. in NIFSTD this is the mereological sum of the individual complexes - in MA it is the superclass - NIF + NIF @@ -353779,7 +353997,7 @@ plexiform layer using GABA. MP defines as epithelial sac, but EHDAA defines as multi-tissue; See https://github.com/obophenotype/uberon/issues/1305 - MP + MP @@ -354058,7 +354276,7 @@ plexiform layer using GABA. A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis. - ISBN:9780878932504 + ISBN:9780878932504 @@ -356114,7 +356332,7 @@ plexiform layer using GABA. somitic mesoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -356194,7 +356412,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -356510,7 +356728,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -357839,7 +358057,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010365 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -357951,7 +358169,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010366 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358065,7 +358283,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010368 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358336,7 +358554,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010418 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358473,7 +358691,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010419 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358599,7 +358817,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010420 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -358732,7 +358950,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0010422 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -361693,7 +361911,7 @@ plexiform layer using GABA. amnionic ectoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -385217,7 +385435,7 @@ plexiform layer using GABA. Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. FMA:71385 - ISBN:3110148986 + ISBN:3110148986 @@ -386112,7 +386330,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -386128,7 +386346,7 @@ plexiform layer using GABA. - FMA-modified + FMA-modified @@ -393549,7 +393767,7 @@ plexiform layer using GABA. MP defines this in a may more appropriate to somatosensory cortex - MP + MP @@ -394678,7 +394896,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -394966,7 +395184,7 @@ plexiform layer using GABA. primary spleen B cell follicle - CL:tm + CL:tm @@ -399499,7 +399717,7 @@ plexiform layer using GABA. NIF divides this into main and accessory - NIF + NIF @@ -408653,7 +408871,7 @@ plexiform layer using GABA. An outgrowth on the lateral trunk of the embryo that develops into a limb or paired fin. The limb/fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. - ISBN:9780878932504 + ISBN:9780878932504 MP:0005650 @@ -411183,7 +411401,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -426502,7 +426720,7 @@ plexiform layer using GABA. parietal mesoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -426563,7 +426781,7 @@ plexiform layer using GABA. splanchnic mesoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -437272,7 +437490,7 @@ plexiform layer using GABA. hair gem - ISBN:9780878932504 + ISBN:9780878932504 @@ -437284,7 +437502,7 @@ plexiform layer using GABA. hair peg - ISBN:9780878932504 + ISBN:9780878932504 @@ -442466,7 +442684,7 @@ plexiform layer using GABA. Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. - ISBN:0683400088 + ISBN:0683400088 MP:0011260 @@ -445684,7 +445902,7 @@ plexiform layer using GABA. Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) BAMS:Or - BIRNLEX:4113 + BIRNLEX:4113 EMAPA:35412 FMA:83893 MA:0000958 @@ -445705,43 +445923,43 @@ plexiform layer using GABA. Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) - BIRNLEX:4113 + BIRNLEX:4113 http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=157 - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 stratum oriens - BIRNLEX:4113 + BIRNLEX:4113 @@ -446443,7 +446661,7 @@ plexiform layer using GABA. FMA:83900 MA:0000897 NCIT:C33137 - NLXANAT:090807 + NLXANAT:090807 PBA:294021786 UMLS:C1709063 cerebral cortex, layer 1 @@ -446479,7 +446697,7 @@ plexiform layer using GABA. The most superficial layer of the neocortex characterized by a paucity of cell bodies. - NLXANAT:090807 + NLXANAT:090807 @@ -446505,13 +446723,13 @@ plexiform layer using GABA. layer 1 of neocortex - NLXANAT:090807 + NLXANAT:090807 layer I of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -446535,37 +446753,37 @@ plexiform layer using GABA. molecular layer of neocortex - NLXANAT:090807 + NLXANAT:090807 neocortex layer 1 - NLXANAT:090807 + NLXANAT:090807 neocortex layer I - NLXANAT:090807 + NLXANAT:090807 neocortex molecular layer - NLXANAT:090807 + NLXANAT:090807 neocortex plexiform layer - NLXANAT:090807 + NLXANAT:090807 plexiform layer of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -446624,7 +446842,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -446753,7 +446971,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -446918,7 +447136,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -447082,7 +447300,7 @@ plexiform layer using GABA. - BRAINSPAN + BRAINSPAN @@ -454198,7 +454416,7 @@ plexiform layer using GABA. A ring of cells capable of forming a limb. - ISBN:9780878932504 + ISBN:9780878932504 @@ -454603,7 +454821,7 @@ plexiform layer using GABA. optic nerve (II) foramen ZFA:0005428 - ZFIN:ZDB-PUB-961014-192 + ZFIN:ZDB-PUB-961014-192 @@ -456319,7 +456537,7 @@ plexiform layer using GABA. isa cell condensation in VSAO; has_part chondroblast in AEO - VSAO + VSAO @@ -459417,7 +459635,7 @@ plexiform layer using GABA. The left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]. - MP:0010566 + MP:0010566 @@ -459449,7 +459667,7 @@ plexiform layer using GABA. left bundle branch - MP:0010566 + MP:0010566 @@ -459461,25 +459679,25 @@ plexiform layer using GABA. left bundle of atrioventricular bundle - MP:0010566 + MP:0010566 left crus of atrioventricular bundle - MP:0010566 + MP:0010566 left posterior branch - MP:0010566 + MP:0010566 left posterior bundle - MP:0010566 + MP:0010566 @@ -460384,7 +460602,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000092 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -460510,7 +460728,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -460607,7 +460825,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000082 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -464022,7 +464240,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced ZFA @@ -466551,7 +466769,7 @@ plexiform layer using GABA. - FMA-abduced + FMA-abduced @@ -472721,7 +472939,7 @@ plexiform layer using GABA. VHOG:0000244 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -474238,7 +474456,7 @@ plexiform layer using GABA. An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -476404,14 +476622,14 @@ plexiform layer using GABA. Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle. VSAO:0005000 - VSAO:NI + VSAO:NI cheiropterygium VSAO:0005000 - VSAO:NI + VSAO:NI @@ -477970,7 +478188,7 @@ plexiform layer using GABA. enveloping layer - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -479978,14 +480196,14 @@ plexiform layer using GABA. - FBbt + FBbt AEO - FBbt + FBbt @@ -487134,7 +487352,7 @@ plexiform layer using GABA. Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -488663,7 +488881,7 @@ plexiform layer using GABA. A germinal center that is located in a lymph node - CL:tm + CL:tm @@ -492353,7 +492571,7 @@ plexiform layer using GABA. 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -494067,7 +494285,7 @@ plexiform layer using GABA. - MA-modified + MA-modified @@ -496655,7 +496873,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -499138,7 +499356,7 @@ plexiform layer using GABA. - FBbt + FBbt @@ -499620,7 +499838,7 @@ plexiform layer using GABA. - ISBN:1607950324 + ISBN:1607950324 @@ -504429,7 +504647,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -506517,13 +506735,13 @@ plexiform layer using GABA. lymph node B cell corona - CL:tm + CL:tm lymph node dark zone - CL:tm + CL:tm @@ -506535,13 +506753,13 @@ plexiform layer using GABA. lymph node inactive zone - CL:tm + CL:tm lymph node peripheral zone - CL:tm + CL:tm @@ -506708,7 +506926,7 @@ plexiform layer using GABA. A lymphoid follicle containing naive B cells - CL:tm + CL:tm @@ -507469,7 +507687,7 @@ plexiform layer using GABA. Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons. - GOC:cvs + GOC:cvs ORCiD:0000-0002-2244-7917 ZFA:0005584 @@ -507822,7 +508040,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -507830,7 +508048,7 @@ plexiform layer using GABA. The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]. VSAO:0005028 - VSAO:NI + VSAO:NI @@ -507843,7 +508061,7 @@ plexiform layer using GABA. acropodium VSAO:0005028 - VSAO:NI + VSAO:NI @@ -508001,7 +508219,7 @@ plexiform layer using GABA. anterior metapodium VSAO:0005026 - VSAO:NI + VSAO:NI @@ -508165,7 +508383,7 @@ plexiform layer using GABA. posterior metapodium VSAO:0005027 - VSAO:NI + VSAO:NI @@ -508240,7 +508458,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -508641,7 +508859,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -508655,14 +508873,14 @@ plexiform layer using GABA. The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the manual autopodium - i.e. the bones of the hands or their cartilaginous precursors[VSAO,modified]. VSAO:0005029 - VSAO:NI + VSAO:NI manual phalanges VSAO:0005029 - VSAO:NI + VSAO:NI @@ -508682,7 +508900,7 @@ plexiform layer using GABA. anterior acropodium VSAO:0005029 - VSAO:NI + VSAO:NI @@ -508778,7 +508996,7 @@ plexiform layer using GABA. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -508797,7 +509015,7 @@ plexiform layer using GABA. pedal phalanges VSAO:0005030 - VSAO:NI + VSAO:NI @@ -508816,7 +509034,7 @@ plexiform layer using GABA. posterior acropodium VSAO:0005030 - VSAO:NI + VSAO:NI @@ -509192,14 +509410,14 @@ plexiform layer using GABA. antebrachium skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni anterior zeugopodium skeleton VSAO:0005011 - VSAO:NI + VSAO:NI @@ -509227,7 +509445,7 @@ plexiform layer using GABA. anterior zeugopodium VSAO:0005011 - VSAO:NI + VSAO:NI @@ -509240,7 +509458,7 @@ plexiform layer using GABA. forelimb epipodium VSAO:0005011 - VSAO:NI + VSAO:NI @@ -509631,7 +509849,7 @@ plexiform layer using GABA. Skeletal subdivision that is a segment of the limb skeleton. VSAO:0005018 - VSAO:NI + VSAO:NI @@ -509801,7 +510019,7 @@ plexiform layer using GABA. crus skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -509821,7 +510039,7 @@ plexiform layer using GABA. hindlimb epipodium VSAO:0005014 - VSAO:NI + VSAO:NI @@ -510284,7 +510502,7 @@ plexiform layer using GABA. A secondary follicle that is located in a lymph node - CL:tm + CL:tm @@ -510326,7 +510544,7 @@ plexiform layer using GABA. A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center. - CL:tm + CL:tm @@ -510338,31 +510556,31 @@ plexiform layer using GABA. central zone of follice - CL:tm + CL:tm light zone of follicle - CL:tm + CL:tm reaction center of follicle - CL:tm + CL:tm lymhpoid nodule - CL:tm + CL:tm nodule - CL:tm + CL:tm @@ -510419,7 +510637,7 @@ plexiform layer using GABA. The part of the secondary follicle that surrounds the germinal center. - CL:tm + CL:tm @@ -510431,19 +510649,19 @@ plexiform layer using GABA. dark zone of follicle - CL:tm + CL:tm inactive zone of follicle - CL:tm + CL:tm peripheral zone of follicle - CL:tm + CL:tm @@ -514284,7 +514502,7 @@ plexiform layer using GABA. - EHDAA2-abduced + EHDAA2-abduced @@ -514650,13 +514868,13 @@ plexiform layer using GABA. - FBbt + FBbt - FBbt + FBbt @@ -516310,7 +516528,7 @@ plexiform layer using GABA. EMAPA - FMA-abduced + FMA-abduced ZFA-abduced @@ -519975,7 +520193,7 @@ plexiform layer using GABA. A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520103,13 +520321,13 @@ plexiform layer using GABA. A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni digitopodium - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520171,7 +520389,7 @@ plexiform layer using GABA. A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -520216,7 +520434,7 @@ plexiform layer using GABA. A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -530671,41 +530889,41 @@ plexiform layer using GABA. isthmus cinguli - NeuroNames:163 + NeuroNames:163 isthmus gyri cingulatus - NeuroNames:163 + NeuroNames:163 isthmus gyri cinguli - NeuroNames:163 + NeuroNames:163 isthmus of gyrus fornicatus - NeuroNames:163 + NeuroNames:163 isthmus of the cingulate gyrus - NeuroNames:163 + NeuroNames:163 isthmus-2 - NeuroNames:163 + NeuroNames:163 @@ -544034,7 +544252,7 @@ plexiform layer using GABA. - nlx + nlx @@ -544045,7 +544263,7 @@ plexiform layer using GABA. - nlx + nlx @@ -546251,7 +546469,7 @@ plexiform layer using GABA. The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts. BTO:0001513 - MGI:cs + MGI:cs @@ -553373,7 +553591,7 @@ plexiform layer using GABA. A collection of hairs that grows on the external ear. - UBERON:EJS + UBERON:EJS @@ -553423,7 +553641,7 @@ plexiform layer using GABA. A zone of skin that is part of the face. - UBERON:EJS + UBERON:EJS @@ -565732,8 +565950,8 @@ plexiform layer using GABA. true - MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z - infer input from direct reg + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg diff --git a/src/ontology/imports/clo_import.owl b/src/ontology/imports/clo_import.owl index aebf81745..c0e48a140 100644 --- a/src/ontology/imports/clo_import.owl +++ b/src/ontology/imports/clo_import.owl @@ -53105,24 +53105,24 @@ pulmonary arterial and venous trees. Examples: There is only one heart.CALOHA:TS-0579 EV:0100050 Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG] - UBERON:0000029 + UMLS:C0024204 MA:0000139 - GAID:947 ZFA_RETIRED:0005318 淋巴结 + GAID:947 UMLS:C0024204 ZFA_RETIRED:0005318 - + OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA 结节淋巴瘤 EV:0100050 - galen:Lymphnode - lymph gland + Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph. + lymph gland EFO:0000872 lymph node BTO:0000784 @@ -53131,13 +53131,13 @@ pulmonary arterial and venous trees. Examples: There is only one heart. BTO:0000784 MAT:0000442 - uberon FMA:5034 + uberon VHOG:0001273 lymph node nodus lymphaticus - VHOG:0001273 EMAPA:35523 + VHOG:0001273 nodus lymphaticus uberon TAO_RETIRED:0005318 @@ -53146,10 +53146,10 @@ pulmonary arterial and venous trees. Examples: There is only one heart.任何由一个结缔组织性被膜包围的淋巴组织团，沿着淋巴管分布，并含有许多淋巴细胞，而这些淋巴细胞可以过滤淋巴液。 - + EMAPA:35523 MA:0000139 - EMAPA:35523 + 淋巴腺 EFO:0000872 @@ -53163,8 +53163,8 @@ pulmonary arterial and venous trees. Examples: There is only one heart.MAT:0000442 MESH:D008198 - + CALOHA:TS-0579 与淋巴系统有关的淋巴结已经在哺乳动物中进化。[well established][VHOG] TAO_RETIRED:0005318 @@ -53175,12 +53175,12 @@ pulmonary arterial and venous trees. Examples: There is only one heart. mesodermal mantle - 中胚层套膜 entire mesoderm + 中胚层套膜 The middle germ layer of the embryo, between the endoderm and ectoderm. The middle germ layer of the embryo, between the endoderm and ectoderm. - entire mesoderm + 整个中胚层 中胚层 @@ -53203,13 +53203,13 @@ pulmonary arterial and venous trees. Examples: There is only one heart.由呼吸相关结构组成的功能系统。 apparatus respiratorius + Functional system which consists of structures involved in respiration. - - Functional system which consists of structures involved in respiration. + systema respiratorium - apparatus respiratorius + apparatus respiratorius respiratory system 呼吸系统(Atmungssystem) @@ -53234,8 +53234,8 @@ pulmonary arterial and venous trees. Examples: There is only one heart. systema nervosum centrale EHDAA2:0000225 - BILA:0000080 UMLS:C0927232 + BILA:0000080 neuraxis systema nervosum centrale EMAPA:16754 @@ -53251,12 +53251,12 @@ pulmonary arterial and venous trees. Examples: There is only one heart.central nervous system MA:0000167 CALOHA:TS-0150 - CNS + FBbt:00005094 XAO:0000215 - The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord. + The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord. 系统神经中枢 Part of the nervous system which includes the brain and spinal cord.[AAO] CNS @@ -53265,8 +53265,8 @@ pulmonary arterial and venous trees. Examples: There is only one heart.The brain and spinal cord. Kimmel et al, 1995.[TAO] neuraxis 神经轴 - FMA:55675 EHDAA:828 + FMA:55675 BAMS:CNS 中枢神经系统(CNS)是神经系统的一部分，其包括视网膜的脑、脊髓和神经细胞层 (CUMBO)。 neuraxis @@ -53283,9 +53283,9 @@ pulmonary arterial and venous trees. Examples: There is only one heart.BTO:0000227 EMAPA:16754 The central nervous system (CNS) is the part of the nervous system which includes the brain, spinal cord, and nerve cell layer of the retina (CUMBO). - FBbt:00005094 - (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2); Taken together, our data make a very strong case that the complex molecular mediolateral architecture of the developing trunk CNS (central nervous system), as shared between Platynereis and vertebrates, was already present in their last common ancestor, Urbilateria. The concept of bilaterian nervous system centralization implies that neuron types concentrate on one side of the trunk, as is the case in vertebrates and many invertebrates including Platynereis, where they segregate and become spatially organized (as opposed to a diffuse nerve net). Our data reveal that a large part of the spatial organization of the annelid and vertebrate CNS was already present in their last common ancestor, which implies that Urbilateria had already possessed a CNS (reference 3).[well established][VHOG] XAO:0000215 + (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2); Taken together, our data make a very strong case that the complex molecular mediolateral architecture of the developing trunk CNS (central nervous system), as shared between Platynereis and vertebrates, was already present in their last common ancestor, Urbilateria. The concept of bilaterian nervous system centralization implies that neuron types concentrate on one side of the trunk, as is the case in vertebrates and many invertebrates including Platynereis, where they segregate and become spatially organized (as opposed to a diffuse nerve net). Our data reveal that a large part of the spatial organization of the annelid and vertebrate CNS was already present in their last common ancestor, which implies that Urbilateria had already possessed a CNS (reference 3).[well established][VHOG] + FBbt:00005094 cerebrospinal axis CALOHA:TS-0150 @@ -53301,8 +53301,8 @@ pulmonary arterial and venous trees. Examples: There is only one heart.OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA UBERON:0001017 - UBERON:0001017 cerebrospinal axis + UBERON:0001017 (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2); Taken together, our data make a very strong case that the complex molecular mediolateral architecture of the developing trunk CNS (central nervous system), as shared between Platynereis and vertebrates, was already present in their last common ancestor, Urbilateria. The concept of bilaterian nervous system centralization implies that neuron types concentrate on one side of the trunk, as is the case in vertebrates and many invertebrates including Platynereis, where they segregate and become spatially organized (as opposed to a diffuse nerve net). Our data reveal that a large part of the spatial organization of the annelid and vertebrate CNS was already present in their last common ancestor, which implies that Urbilateria had already possessed a CNS (reference 3).[well established][VHOG] EHDAA:828 GAID:570 @@ -53314,9 +53314,9 @@ pulmonary arterial and venous trees. Examples: There is only one heart.uberon EMAPA:16470 + TAO:0000012 大脑和脊髓。Kimmel et al, 1995.[TAO] - TAO:0000012 The central nervous system (CNS) is the part of the nervous system which includes the brain, spinal cord, and nerve cell layer of the retina (CUMBO). GAID:570 systema nervosum centrale @@ -53331,8 +53331,8 @@ pulmonary arterial and venous trees. Examples: There is only one heart.ZFA:0000012 CNS - CNS FMA:55675 + CNS The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord. EV:0100163 EFO:0000908 @@ -53342,9 +53342,9 @@ pulmonary arterial and venous trees. Examples: There is only one heart.脑脊髓轴 - 消化道(digestive canal) - digestive canal gut tube + digestive canal + 消化道(digestive canal) 肠道 alimentary canal digestive tube @@ -53356,12 +53356,12 @@ pulmonary arterial and venous trees. Examples: There is only one heart.digestive tube alimentary canal 消化道 - 从口腔延伸到肛门的管 digestive tract + 从口腔延伸到肛门的管 - gut 消化道(alimentary canal) + gut alimentary tract gut diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl index c55e79293..e0e6805e3 100644 --- a/src/ontology/imports/go_import.owl +++ b/src/ontology/imports/go_import.owl @@ -10989,7 +10989,7 @@ A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. - GOC:pdt + GOC:pdt @@ -11281,7 +11281,7 @@ A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). - GOC:pdt + GOC:pdt NIF_Subcellular:sao1337158144 @@ -12092,7 +12092,7 @@ The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. - ISBN:0192800981 + ISBN:0192800981 @@ -12900,7 +12900,7 @@ A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. GOC:cjm - GOC:dhl + GOC:dhl GOC:ecd GOC:go_curators GOC:mtg_apoptosis @@ -14825,7 +14825,7 @@ A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -21409,7 +21409,7 @@ The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties. - ISBN:0192800981 + ISBN:0192800981 @@ -21504,7 +21504,7 @@ RBC differentiation - CL:0000232 + CL:0000232 @@ -21517,7 +21517,7 @@ red blood cell differentiation - CL:0000232 + CL:0000232 @@ -23260,7 +23260,7 @@ A vesicle found in the cytoplasm of a cell. GOC:ai GOC:mah - GOC:vesicles + GOC:vesicles @@ -23510,7 +23510,7 @@ Any small, fluid-filled, spherical organelle enclosed by membrane. GOC:mah GOC:pz - GOC:vesicles + GOC:vesicles @@ -25317,7 +25317,7 @@ The appearance of type I interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. GOC:add ISBN:0126896631 - PMID:15546383 + PMID:15546383 PMID:16681834 @@ -25352,7 +25352,7 @@ The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -25774,7 +25774,7 @@ Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -26360,7 +26360,7 @@ Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -27020,7 +27020,7 @@ Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. GOC:add GOC:mah - PMID:15546383 + PMID:15546383 @@ -29543,19 +29543,19 @@ Any process of regulating the production and elimination of erythrocytes within an organism. GOC:add PMID:10694114 - PMID:14754397 + PMID:14754397 RBC homeostasis - CL:0000232 + CL:0000232 red blood cell homeostasis - CL:0000232 + CL:0000232 @@ -29585,25 +29585,25 @@ The selective elimination of erythrocytes from the body by autoregulatory mechanisms. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 RBC clearance - CL:0000232 + CL:0000232 red blood cell clearance - CL:0000232 + CL:0000232 neocytolysis - PMID:14754397 + PMID:14754397 @@ -29750,25 +29750,25 @@ Any process that modulates the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 regulation of RBC clearance - CL:0000232 + CL:0000232 regulation of red blood cell clearance - CL:0000232 + CL:0000232 regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -29810,25 +29810,25 @@ Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 negative regulation of RBC clearance - CL:0000232 + CL:0000232 negative regulation of red blood cell clearance - CL:0000232 + CL:0000232 negative regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -29870,25 +29870,25 @@ Any process that activates or increases the frequency, rate, or extent of erythrocyte clearance. GOC:add PMID:12905029 - PMID:14754397 + PMID:14754397 positive regulation of RBC clearance - CL:0000232 + CL:0000232 positive regulation of red blood cell clearance - CL:0000232 + CL:0000232 positive regulation of neocytolysis - PMID:14754397 + PMID:14754397 @@ -33768,7 +33768,7 @@ The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte. - GOC:rk + GOC:rk PMID:14685684 @@ -35210,7 +35210,7 @@ Any process evolved to enable an interaction with an organism of a different species. - GOC:cc + GOC:cc @@ -37408,13 +37408,13 @@ regulation of RBC differentiation - CL:0000232 + CL:0000232 regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -37462,13 +37462,13 @@ negative regulation of RBC differentiation - CL:0000232 + CL:0000232 negative regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -37517,13 +37517,13 @@ positive regulation of RBC differentiation - CL:0000232 + CL:0000232 positive regulation of red blood cell differentiation - CL:0000232 + CL:0000232 @@ -49534,7 +49534,7 @@ A compound molecular function in which an effector function is controlled by one or more regulatory components. GOC:dos - GOC:pdt + GOC:pdt @@ -49564,7 +49564,7 @@ The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way. - GOC:mtg_MIT_16mar07 + GOC:mtg_MIT_16mar07 GOC:vw @@ -54466,7 +54466,7 @@ extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -54649,7 +54649,7 @@ Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). - GOC:dhl + GOC:dhl @@ -55642,7 +55642,7 @@ The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. - CL:0000451 + CL:0000451 GOC:pr @@ -55723,7 +55723,7 @@ Any process that activates or increases the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. GOC:BHF - GOC:sjp + GOC:sjp PMID:18550748 @@ -55744,7 +55744,7 @@ Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure. - GOC:sjw + GOC:sjw PMID:7583672 @@ -55908,7 +55908,7 @@ Any vesicle that is part of the intracellular region. - GOC:vesicles + GOC:vesicles @@ -66420,7 +66420,7 @@ regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -66489,7 +66489,7 @@ negative regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -66570,7 +66570,7 @@ positive regulation of extracellular vesicular exosome assembly - GOC:vesicles + GOC:vesicles @@ -66941,7 +66941,7 @@ microparticle - GOC:vesicles + GOC:vesicles diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index 60f723d00..f8676590c 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -3624,7 +3624,7 @@ For example, A and B may be gene products and binding of B by A positively regul conformation - VT:1000738 + VT:1000738 @@ -3929,7 +3929,7 @@ For example, A and B may be gene products and binding of B by A positively regul A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. - Wikipedia:http://en.wikipedia.org/wiki/Ploidy + Wikipedia:http://en.wikipedia.org/wiki/Ploidy @@ -3949,7 +3949,7 @@ For example, A and B may be gene products and binding of B by A positively regul A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. - Wikipedia:http://en.wikipedia.org/wiki/Haploid + Wikipedia:http://en.wikipedia.org/wiki/Haploid @@ -5970,8 +5970,8 @@ For example, A and B may be gene products and binding of B by A positively regul true - MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z - infer input from direct reg + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg diff --git a/src/ontology/imports/uberon_import.owl b/src/ontology/imports/uberon_import.owl index d1a5f4576..d235c6bc0 100644 --- a/src/ontology/imports/uberon_import.owl +++ b/src/ontology/imports/uberon_import.owl @@ -4588,7 +4588,7 @@ A light sensing organ composed of ommatidia - FB:gg + FB:gg @@ -4732,7 +4732,7 @@ VHOG:0000275 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -12041,7 +12041,7 @@ - FMA-abduced + FMA-abduced @@ -16188,7 +16188,7 @@ FEED:rd - ISBN:1607950324 + ISBN:1607950324 @@ -23906,7 +23906,7 @@ VHOG:0000169 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -24068,7 +24068,7 @@ VHOG:0000229 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -25127,7 +25127,7 @@ TAO:0000367 UMLS:C0022417 VHOG:0001276 - VSAO:0000101 + VSAO:0000101 XAO:0000171 ZFA:0001596 galen:Joint @@ -25149,14 +25149,14 @@ GO_REF:0000034 - VSAO:0000101 + VSAO:0000101 Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] 2012-08-14 - VSAO:0000101 + VSAO:0000101 VSAO PSPUB:0000170 @@ -25173,14 +25173,14 @@ articulation - VSAO:0000101 + VSAO:0000101 joint FMA:7490 - VSAO:0000101 + VSAO:0000101 @@ -25260,7 +25260,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -26749,7 +26749,7 @@ AAO:0010788 - BTO:0001234 + BTO:0001234 CALOHA:TS-0919 EFO:0000986 EMAPA:19180 @@ -26788,7 +26788,7 @@ Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct. - BTO:0001234 + BTO:0001234 @@ -26820,13 +26820,13 @@ glandula seminalis - BTO:0001234 + BTO:0001234 glandula vesiculosa - BTO:0001234 + BTO:0001234 @@ -26838,7 +26838,7 @@ vesicula seminalis - BTO:0001234 + BTO:0001234 @@ -27475,7 +27475,7 @@ Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. - FB:gg + FB:gg NLM:alimentary+system @@ -28050,7 +28050,7 @@ BIRNLEX:844 ISBN:0-14-051288-8 - ISBN:3110148986 + ISBN:3110148986 NLM:nervous+system WB:rynl ZFIN:curator @@ -28185,7 +28185,7 @@ - FBbt + FBbt cjm @@ -28487,7 +28487,7 @@ - FBbt + FBbt @@ -43883,7 +43883,7 @@ MP treats ureter urothelium and ureter luminal urothelium as exact synonyms, yes MA treats these as distinct; see also: transitional epithelium vs urothelium - MP + MP @@ -52334,7 +52334,7 @@ - FMA-modified + FMA-modified @@ -53505,7 +53505,7 @@ - FMA-modified + FMA-modified @@ -53672,7 +53672,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -53819,7 +53819,7 @@ - FMA-modified + FMA-modified @@ -58968,7 +58968,7 @@ A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII - FEED:rd + FEED:rd @@ -59202,7 +59202,7 @@ - FEED + FEED Wikipedia @@ -59227,7 +59227,7 @@ The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] 2012-07-02 - FEED + FEED http://www.feedexp.org @@ -59320,14 +59320,14 @@ - FEED + FEED Wikipedia A muscle innervated by a facial nerve. - FEED:rd + FEED:rd @@ -63795,7 +63795,7 @@ basi paired exo and supra occipital bones - MA-modified + MA-modified @@ -66262,7 +66262,7 @@ A muscular organ in the floor of the mouth. - FEED:rd + FEED:rd @@ -66400,7 +66400,7 @@ - FMA-modified + FMA-modified @@ -69227,7 +69227,7 @@ VHOG:0000101 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -69820,7 +69820,7 @@ VHOG:0000102 VHOG - DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) + DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007) @@ -69982,7 +69982,7 @@ MP treats posterior uvea and optic choroid as distinct - MP + MP @@ -71555,7 +71555,7 @@ NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030] - NIF + NIF @@ -77440,7 +77440,7 @@ The most anterior region the brain including both the telencephalon and diencephalon. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -86953,7 +86953,7 @@ Muscle tissue that contains fibers that are divided by transverse bands into striations. CL:0000737 - GOC:dph + GOC:dph GOC:mtg_muscle @@ -89259,7 +89259,7 @@ - FMA-modified + FMA-modified @@ -96080,7 +96080,7 @@ VHOG:0000141 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -96325,7 +96325,7 @@ VHOG:0000142 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -98897,7 +98897,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -99827,7 +99827,7 @@ The definition was adapted from the NIFSTD class which has been retired. It has been generalized so it is applicable to various different kinds of olfactory tracts found in different taxa. - cjm + cjm ISBN:0471888893 @@ -102140,7 +102140,7 @@ nlx_anat_101177 seems to have been lost in the transition from NIFGA to Neurolex - NIF + NIF https://github.com/SciCrunch/NIF-Ontology/issues/83 @@ -106306,7 +106306,7 @@ AAO:0010551 - BTO:0000047 + BTO:0000047 CALOHA:TS-0016 EFO:0000238 EMAPA:18426 @@ -106371,7 +106371,7 @@ Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. - BTO:0000047 + BTO:0000047 @@ -106416,19 +106416,19 @@ adrenal - BTO:0000047 + BTO:0000047 adrenal capsule - BTO:0000047 + BTO:0000047 atrabiliary capsule - BTO:0000047 + BTO:0000047 @@ -106440,13 +106440,13 @@ epinephros - BTO:0000047 + BTO:0000047 glandula suprarenalis - BTO:0000047 + BTO:0000047 @@ -106459,7 +106459,7 @@ suprarenal capsule - BTO:0000047 + BTO:0000047 @@ -107004,7 +107004,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -108198,7 +108198,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -112328,7 +112328,7 @@ maternal placenta - GOC:dph + GOC:dph @@ -116627,7 +116627,7 @@ in NIFSTD this is the mereological sum of the individual complexes - in MA it is the superclass - NIF + NIF @@ -119332,7 +119332,7 @@ MP defines as epithelial sac, but EHDAA defines as multi-tissue; See https://github.com/obophenotype/uberon/issues/1305 - MP + MP @@ -121741,7 +121741,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -122055,7 +122055,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -123379,7 +123379,7 @@ 2012-06-20 AAO:0010365 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -123491,7 +123491,7 @@ 2012-06-20 AAO:0010366 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -123605,7 +123605,7 @@ 2012-06-20 AAO:0010368 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -123876,7 +123876,7 @@ 2012-06-20 AAO:0010418 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -124013,7 +124013,7 @@ 2012-06-20 AAO:0010419 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -124139,7 +124139,7 @@ 2012-06-20 AAO:0010420 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -124272,7 +124272,7 @@ 2012-06-20 AAO:0010422 AAO - ISBN:0-02-377110-0 + ISBN:0-02-377110-0 @@ -150734,7 +150734,7 @@ Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. FMA:71385 - ISBN:3110148986 + ISBN:3110148986 @@ -151628,7 +151628,7 @@ - FMA-modified + FMA-modified @@ -151644,7 +151644,7 @@ - FMA-modified + FMA-modified @@ -159052,7 +159052,7 @@ MP defines this in a may more appropriate to somatosensory cortex - MP + MP @@ -160178,7 +160178,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -164985,7 +164985,7 @@ NIF divides this into main and accessory - NIF + NIF @@ -176652,7 +176652,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -207893,7 +207893,7 @@ Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. - ISBN:0683400088 + ISBN:0683400088 MP:0011260 @@ -211106,7 +211106,7 @@ Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) BAMS:Or - BIRNLEX:4113 + BIRNLEX:4113 EMAPA:35412 FMA:83893 MA:0000958 @@ -211127,43 +211127,43 @@ Layer that is part of the CA fields of the hippocampus consisting of a narrow relatively cell free layer located deep to the pyramidal cell layer extending through areas CA1, CA2 and CA3. (adapted from Paxinos The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995) - BIRNLEX:4113 + BIRNLEX:4113 http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=157 - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 oriens layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of hippocampus - BIRNLEX:4113 + BIRNLEX:4113 polymorphic layer of the hippocampus - BIRNLEX:4113 + BIRNLEX:4113 stratum oriens - BIRNLEX:4113 + BIRNLEX:4113 @@ -211864,7 +211864,7 @@ FMA:83900 MA:0000897 NCIT:C33137 - NLXANAT:090807 + NLXANAT:090807 PBA:294021786 UMLS:C1709063 cerebral cortex, layer 1 @@ -211900,7 +211900,7 @@ The most superficial layer of the neocortex characterized by a paucity of cell bodies. - NLXANAT:090807 + NLXANAT:090807 @@ -211926,13 +211926,13 @@ layer 1 of neocortex - NLXANAT:090807 + NLXANAT:090807 layer I of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -211956,37 +211956,37 @@ molecular layer of neocortex - NLXANAT:090807 + NLXANAT:090807 neocortex layer 1 - NLXANAT:090807 + NLXANAT:090807 neocortex layer I - NLXANAT:090807 + NLXANAT:090807 neocortex molecular layer - NLXANAT:090807 + NLXANAT:090807 neocortex plexiform layer - NLXANAT:090807 + NLXANAT:090807 plexiform layer of neocortex - NLXANAT:090807 + NLXANAT:090807 @@ -212045,7 +212045,7 @@ - BRAINSPAN + BRAINSPAN @@ -212174,7 +212174,7 @@ - BRAINSPAN + BRAINSPAN @@ -212339,7 +212339,7 @@ - BRAINSPAN + BRAINSPAN @@ -212503,7 +212503,7 @@ - BRAINSPAN + BRAINSPAN @@ -220014,7 +220014,7 @@ optic nerve (II) foramen ZFA:0005428 - ZFIN:ZDB-PUB-961014-192 + ZFIN:ZDB-PUB-961014-192 @@ -224813,7 +224813,7 @@ The left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]. - MP:0010566 + MP:0010566 @@ -224845,7 +224845,7 @@ left bundle branch - MP:0010566 + MP:0010566 @@ -224857,25 +224857,25 @@ left bundle of atrioventricular bundle - MP:0010566 + MP:0010566 left crus of atrioventricular bundle - MP:0010566 + MP:0010566 left posterior branch - MP:0010566 + MP:0010566 left posterior bundle - MP:0010566 + MP:0010566 @@ -225778,7 +225778,7 @@ 2012-06-20 AAO:0000092 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -225904,7 +225904,7 @@ 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -226001,7 +226001,7 @@ 2012-06-20 AAO:0000082 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -229404,7 +229404,7 @@ - EHDAA2-abduced + EHDAA2-abduced ZFA @@ -231924,7 +231924,7 @@ - FMA-abduced + FMA-abduced @@ -238083,7 +238083,7 @@ VHOG:0000244 VHOG - ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 + ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5 @@ -239599,7 +239599,7 @@ An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -243316,7 +243316,7 @@ enveloping layer - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -245322,14 +245322,14 @@ - FBbt + FBbt AEO - FBbt + FBbt @@ -249614,7 +249614,7 @@ A ridge of epidermal cells that will form the mammary placodes. - GOC:dph + GOC:dph @@ -250559,7 +250559,7 @@ A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]. GO:0060037 - GOC:dph + GOC:dph @@ -252468,7 +252468,7 @@ Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -255357,7 +255357,7 @@ The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium. - GOC:dph + GOC:dph GOC:sdb_2009 GOC:tb @@ -257677,7 +257677,7 @@ 2012-06-20 AAO:0000612 AAO - AAO:Duellman_and_Trueb_1994 + AAO:Duellman_and_Trueb_1994 @@ -259387,7 +259387,7 @@ - MA-modified + MA-modified @@ -261241,7 +261241,7 @@ A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis. GO:0061333 - GOC:dph + GOC:dph GOC:mtg_kidney_jan10 @@ -261699,7 +261699,7 @@ A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop. GO:0060515 - GOC:dph + GOC:dph @@ -261963,7 +261963,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -264441,7 +264441,7 @@ - FBbt + FBbt @@ -264922,7 +264922,7 @@ - ISBN:1607950324 + ISBN:1607950324 @@ -269674,7 +269674,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -272992,7 +272992,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -273410,7 +273410,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -273811,7 +273811,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -273948,7 +273948,7 @@ - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -274362,7 +274362,7 @@ antebrachium skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -274970,7 +274970,7 @@ crus skeleton - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -279438,7 +279438,7 @@ - EHDAA2-abduced + EHDAA2-abduced @@ -279803,13 +279803,13 @@ - FBbt + FBbt - FBbt + FBbt @@ -281460,7 +281460,7 @@ EMAPA - FMA-abduced + FMA-abduced ZFA-abduced @@ -285110,7 +285110,7 @@ A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -285238,13 +285238,13 @@ A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni digitopodium - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -285306,7 +285306,7 @@ A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -285351,7 +285351,7 @@ A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton. - PHENOSCAPE:ni + PHENOSCAPE:ni @@ -295770,41 +295770,41 @@ isthmus cinguli - NeuroNames:163 + NeuroNames:163 isthmus gyri cingulatus - NeuroNames:163 + NeuroNames:163 isthmus gyri cinguli - NeuroNames:163 + NeuroNames:163 isthmus of gyrus fornicatus - NeuroNames:163 + NeuroNames:163 isthmus of the cingulate gyrus - NeuroNames:163 + NeuroNames:163 isthmus-2 - NeuroNames:163 + NeuroNames:163 @@ -309096,7 +309096,7 @@ - nlx + nlx @@ -309107,7 +309107,7 @@ - nlx + nlx @@ -309492,7 +309492,7 @@ A specific region of the foregut into the area in which the lung will develop. - GOC:dph + GOC:dph GOC:mtg_lung @@ -311306,7 +311306,7 @@ The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts. BTO:0001513 - MGI:cs + MGI:cs @@ -318404,7 +318404,7 @@ A collection of hairs that grows on the external ear. - UBERON:EJS + UBERON:EJS @@ -318454,7 +318454,7 @@ A zone of skin that is part of the face. - UBERON:EJS + UBERON:EJS diff --git a/src/ontology/reports/cl-edit.owl-obo-report.tsv b/src/ontology/reports/cl-edit.owl-obo-report.tsv index 60ce8f598..516f35f95 100644 --- a/src/ontology/reports/cl-edit.owl-obo-report.tsv +++ b/src/ontology/reports/cl-edit.owl-obo-report.tsv @@ -548,6 +548,12 @@ INFO missing_superclass CL:0009024 rdfs:subClassOf INFO missing_superclass CL:0009025 rdfs:subClassOf INFO missing_superclass CL:0009026 rdfs:subClassOf INFO missing_superclass CL:0009028 rdfs:subClassOf +INFO missing_superclass CL:0009029 rdfs:subClassOf +INFO missing_superclass CL:0009030 rdfs:subClassOf +INFO missing_superclass CL:0009031 rdfs:subClassOf +INFO missing_superclass CL:0009032 rdfs:subClassOf +INFO missing_superclass CL:0009033 rdfs:subClassOf +INFO missing_superclass CL:0009034 rdfs:subClassOf INFO missing_superclass CL:0010001 rdfs:subClassOf INFO missing_superclass CL:0010002 rdfs:subClassOf INFO missing_superclass CL:0010003 rdfs:subClassOf diff --git a/src/ontology/subsets/BDS_subset.owl b/src/ontology/subsets/BDS_subset.owl index db8d283b4..01e586158 100644 --- a/src/ontology/subsets/BDS_subset.owl +++ b/src/ontology/subsets/BDS_subset.owl @@ -4975,7 +4975,7 @@ For example, A and B may be gene products and binding of B by A positively regul immediately transforms from - SIO:000658 + SIO:000658 @@ -8261,7 +8261,7 @@ For example, A and B may be gene products and binding of B by A positively regul L6 CT - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -8325,7 +8325,7 @@ For example, A and B may be gene products and binding of B by A positively regul non-MY ET MOp (Mus) - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -8364,7 +8364,7 @@ For example, A and B may be gene products and binding of B by A positively regul MY ET MOp (Mus) - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -8853,7 +8853,7 @@ For example, A and B may be gene products and binding of B by A positively regul A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). - GOC:pdt + GOC:pdt NIF_Subcellular:sao1337158144 @@ -9204,7 +9204,7 @@ For example, A and B may be gene products and binding of B by A positively regul A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -17057,7 +17057,7 @@ For example, A and B may be gene products and binding of B by A positively regul TAO:0000367 UMLS:C0022417 VHOG:0001276 - VSAO:0000101 + VSAO:0000101 XAO:0000171 ZFA:0001596 galen:Joint @@ -17079,14 +17079,14 @@ For example, A and B may be gene products and binding of B by A positively regul GO_REF:0000034 - VSAO:0000101 + VSAO:0000101 Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] 2012-08-14 - VSAO:0000101 + VSAO:0000101 VSAO PSPUB:0000170 @@ -17103,14 +17103,14 @@ For example, A and B may be gene products and binding of B by A positively regul articulation - VSAO:0000101 + VSAO:0000101 joint FMA:7490 - VSAO:0000101 + VSAO:0000101 @@ -17304,7 +17304,7 @@ For example, A and B may be gene products and binding of B by A positively regul Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. - FB:gg + FB:gg NLM:alimentary+system @@ -17586,7 +17586,7 @@ For example, A and B may be gene products and binding of B by A positively regul BIRNLEX:844 ISBN:0-14-051288-8 - ISBN:3110148986 + ISBN:3110148986 NLM:nervous+system WB:rynl ZFIN:curator @@ -17721,7 +17721,7 @@ For example, A and B may be gene products and binding of B by A positively regul - FBbt + FBbt cjm @@ -19116,7 +19116,7 @@ For example, A and B may be gene products and binding of B by A positively regul The most anterior region the brain including both the telencephalon and diencephalon. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -23287,7 +23287,7 @@ For example, A and B may be gene products and binding of B by A positively regul somitic mesoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -26078,7 +26078,7 @@ For example, A and B may be gene products and binding of B by A positively regul Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. - ISBN:0683400088 + ISBN:0683400088 MP:0011260 @@ -27566,7 +27566,7 @@ For example, A and B may be gene products and binding of B by A positively regul An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -28244,7 +28244,7 @@ For example, A and B may be gene products and binding of B by A positively regul enveloping layer - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -29566,7 +29566,7 @@ For example, A and B may be gene products and binding of B by A positively regul - FBbt + FBbt diff --git a/src/ontology/subsets/BDS_subset.tsv b/src/ontology/subsets/BDS_subset.tsv index 74d9f62bc..427bed183 100644 --- a/src/ontology/subsets/BDS_subset.tsv +++ b/src/ontology/subsets/BDS_subset.tsv @@ -1,117 +1,117 @@ ?x ?label -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1023 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1060 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1069 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1162 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1175 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1373 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1405 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1433 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1602 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1777 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1791 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1822 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1909 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1929 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1942 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1952 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1961 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1972 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1984 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2002 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2048 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2054 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2066 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2073 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2084 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2091 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2099 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2123 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2143 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2177 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2185 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2197 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2215 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2229 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2240 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2265 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2282 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2311 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2320 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2329 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2339 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2351 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2360 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2374 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2382 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2388 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2404 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2414 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2423 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2434 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2445 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2469 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2482 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2509 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2523 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2544 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2565 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2571 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2578 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2583 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2608 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2619 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2630 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2640 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2651 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2666 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2676 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2683 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2716 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2728 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2735 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2743 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2751 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2756 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2802 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid300 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid306 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid316 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid331 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid337 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid348 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid358 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid363 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid369 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid374 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid380 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid386 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid395 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid401 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid407 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid424 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid442 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid452 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid462 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid472 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid54 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid567 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid618 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid62 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid669 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid676 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid77 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid797 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid807 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid814 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid824 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid839 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid847 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid856 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid868 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid877 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid888 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid953 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1023 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1060 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1069 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1162 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1175 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1373 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1405 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1433 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1602 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1777 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1791 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1822 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1909 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1929 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1942 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1952 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1961 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1972 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1984 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2002 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2048 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2054 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2066 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2073 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2084 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2091 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2099 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2123 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2143 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2177 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2185 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2197 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2215 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2229 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2240 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2265 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2282 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2311 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2320 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2329 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2339 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2351 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2360 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2374 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2382 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2388 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2404 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2414 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2423 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2434 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2445 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2469 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2482 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2509 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2523 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2544 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2565 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2571 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2578 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2583 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2608 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2619 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2630 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2640 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2651 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2666 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2676 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2683 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2716 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2728 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2735 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2743 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2751 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2756 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2802 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid300 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid306 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid316 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid331 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid337 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid348 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid358 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid363 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid369 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid374 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid380 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid386 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid395 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid401 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid407 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid424 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid442 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid452 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid462 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid472 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid54 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid567 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid618 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid62 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid669 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid676 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid77 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid797 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid807 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid814 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid824 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid839 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid847 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid856 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid868 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid877 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid888 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid953 "continuant" "occurrent" "independent continuant" @@ -192,10 +192,10 @@ _:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid953 "L6b glutamatergic cortical neuron" "L2/3-6 intratelencephalic projecting glutamatergic cortical neuron" "L5 extratelencephalic projecting glutamatergic cortical neuron" - "L6 corticothalamic-projecting projecting glutamatergic cortical neuron" + "L6 corticothalamic-projecting glutamatergic cortical neuron" "L5/6 near-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" - "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" - "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" + "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" + "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" "L6b subplate glutamatergic neuron of the primary motor cortex (Mus musculus)" "L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" "L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" diff --git a/subsets/BDS_subset.owl b/subsets/BDS_subset.owl index db8d283b4..01e586158 100644 --- a/subsets/BDS_subset.owl +++ b/subsets/BDS_subset.owl @@ -4975,7 +4975,7 @@ For example, A and B may be gene products and binding of B by A positively regul immediately transforms from - SIO:000658 + SIO:000658 @@ -8261,7 +8261,7 @@ For example, A and B may be gene products and binding of B by A positively regul L6 CT - L6 corticothalamic-projecting projecting glutamatergic cortical neuron + L6 corticothalamic-projecting glutamatergic cortical neuron @@ -8325,7 +8325,7 @@ For example, A and B may be gene products and binding of B by A positively regul non-MY ET MOp (Mus) - non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -8364,7 +8364,7 @@ For example, A and B may be gene products and binding of B by A positively regul MY ET MOp (Mus) - medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus) + medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus) @@ -8853,7 +8853,7 @@ For example, A and B may be gene products and binding of B by A positively regul A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). - GOC:pdt + GOC:pdt NIF_Subcellular:sao1337158144 @@ -9204,7 +9204,7 @@ For example, A and B may be gene products and binding of B by A positively regul A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -17057,7 +17057,7 @@ For example, A and B may be gene products and binding of B by A positively regul TAO:0000367 UMLS:C0022417 VHOG:0001276 - VSAO:0000101 + VSAO:0000101 XAO:0000171 ZFA:0001596 galen:Joint @@ -17079,14 +17079,14 @@ For example, A and B may be gene products and binding of B by A positively regul GO_REF:0000034 - VSAO:0000101 + VSAO:0000101 Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] 2012-08-14 - VSAO:0000101 + VSAO:0000101 VSAO PSPUB:0000170 @@ -17103,14 +17103,14 @@ For example, A and B may be gene products and binding of B by A positively regul articulation - VSAO:0000101 + VSAO:0000101 joint FMA:7490 - VSAO:0000101 + VSAO:0000101 @@ -17304,7 +17304,7 @@ For example, A and B may be gene products and binding of B by A positively regul Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. - FB:gg + FB:gg NLM:alimentary+system @@ -17586,7 +17586,7 @@ For example, A and B may be gene products and binding of B by A positively regul BIRNLEX:844 ISBN:0-14-051288-8 - ISBN:3110148986 + ISBN:3110148986 NLM:nervous+system WB:rynl ZFIN:curator @@ -17721,7 +17721,7 @@ For example, A and B may be gene products and binding of B by A positively regul - FBbt + FBbt cjm @@ -19116,7 +19116,7 @@ For example, A and B may be gene products and binding of B by A positively regul The most anterior region the brain including both the telencephalon and diencephalon. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -23287,7 +23287,7 @@ For example, A and B may be gene products and binding of B by A positively regul somitic mesoderm - ISBN:9780878932504 + ISBN:9780878932504 @@ -26078,7 +26078,7 @@ For example, A and B may be gene products and binding of B by A positively regul Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. - ISBN:0683400088 + ISBN:0683400088 MP:0011260 @@ -27566,7 +27566,7 @@ For example, A and B may be gene products and binding of B by A positively regul An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -28244,7 +28244,7 @@ For example, A and B may be gene products and binding of B by A positively regul enveloping layer - ZFIN:ZDB-PUB-961014-576 + ZFIN:ZDB-PUB-961014-576 @@ -29566,7 +29566,7 @@ For example, A and B may be gene products and binding of B by A positively regul - FBbt + FBbt diff --git a/subsets/BDS_subset.tsv b/subsets/BDS_subset.tsv index 74d9f62bc..427bed183 100644 --- a/subsets/BDS_subset.tsv +++ b/subsets/BDS_subset.tsv @@ -1,117 +1,117 @@ ?x ?label -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1023 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1060 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1069 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1162 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1175 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1373 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1405 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1433 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1602 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1777 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1791 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1822 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1909 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1929 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1942 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1952 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1961 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1972 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid1984 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2002 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2048 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2054 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2066 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2073 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2084 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2091 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2099 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2123 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2143 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2177 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2185 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2197 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2215 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2229 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2240 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2265 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2282 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2311 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2320 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2329 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2339 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2351 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2360 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2374 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2382 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2388 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2404 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2414 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2423 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2434 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2445 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2469 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2482 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2509 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2523 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2544 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2565 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2571 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2578 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2583 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2608 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2619 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2630 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2640 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2651 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2666 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2676 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2683 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2716 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2728 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2735 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2743 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2751 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2756 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid2802 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid300 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid306 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid316 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid331 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid337 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid348 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid358 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid363 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid369 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid374 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid380 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid386 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid395 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid401 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid407 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid424 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid442 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid452 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid462 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid472 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid54 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid567 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid618 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid62 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid669 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid676 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid77 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid797 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid807 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid814 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid824 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid839 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid847 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid856 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid868 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid877 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid888 -_:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid953 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1023 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1060 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1069 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1162 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1175 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1373 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1405 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1433 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1602 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1777 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1791 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1822 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1909 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1929 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1942 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1952 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1961 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1972 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid1984 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2002 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2048 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2054 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2066 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2073 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2084 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2091 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2099 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2123 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2143 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2177 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2185 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2197 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2215 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2229 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2240 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2265 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2282 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2311 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2320 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2329 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2339 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2351 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2360 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2374 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2382 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2388 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2404 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2414 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2423 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2434 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2445 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2469 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2482 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2509 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2523 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2544 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2565 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2571 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2578 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2583 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2608 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2619 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2630 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2640 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2651 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2666 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2676 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2683 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2716 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2728 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2735 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2743 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2751 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2756 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid2802 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid300 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid306 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid316 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid331 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid337 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid348 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid358 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid363 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid369 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid374 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid380 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid386 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid395 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid401 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid407 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid424 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid442 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid452 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid462 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid472 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid54 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid567 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid618 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid62 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid669 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid676 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid77 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid797 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid807 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid814 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid824 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid839 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid847 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid856 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid868 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid877 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid888 +_:Bb21f6b6bX2D9742X2D4290X2D88c1X2Dccb030746288genid953 "continuant" "occurrent" "independent continuant" @@ -192,10 +192,10 @@ _:B2bb6488aX2D265dX2D4bd9X2D8414X2De59fac66902bgenid953 "L6b glutamatergic cortical neuron" "L2/3-6 intratelencephalic projecting glutamatergic cortical neuron" "L5 extratelencephalic projecting glutamatergic cortical neuron" - "L6 corticothalamic-projecting projecting glutamatergic cortical neuron" + "L6 corticothalamic-projecting glutamatergic cortical neuron" "L5/6 near-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" - "non-medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" - "medulla projecting extratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" + "non-medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" + "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" "L6b subplate glutamatergic neuron of the primary motor cortex (Mus musculus)" "L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)" "L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mus musculus)"