From d546f2812019be2af5b8dceb3bdf09b69b24db9b Mon Sep 17 00:00:00 2001 From: cmungall Date: Mon, 9 Jul 2018 17:25:35 -0700 Subject: [PATCH] new release --- cl-base.owl | 84125 +++++++++++++++++++++++ cl-basic.obo | 18 +- cl-basic.owl | 33 +- cl.obo | 155 +- cl.owl | 208 +- imports/chebi_import.owl | 2 +- imports/go_import.owl | 2 +- imports/pato_import.owl | 2 +- imports/pr_import.owl | 2 +- imports/uberon_import.owl | 330 +- src/ontology/cl-basic.obo | 18 +- src/ontology/cl-basic.owl | 33 +- src/ontology/imports/chebi_import.owl | 2 +- src/ontology/imports/go_import.owl | 2 +- src/ontology/imports/pato_import.owl | 2 +- src/ontology/imports/pr_import.owl | 2 +- src/ontology/imports/uberon_import.obo | 9716 +-- src/ontology/imports/uberon_import.owl | 330 +- 18 files changed, 89778 insertions(+), 5204 deletions(-) create mode 100644 cl-base.owl diff --git a/cl-base.owl b/cl-base.owl new file mode 100644 index 000000000..5fba97944 --- /dev/null +++ b/cl-base.owl @@ -0,0 +1,84125 @@ + + + + + Chris Mungall + Ceri van Slyke + + Melissa Haendel + Terry Meehan + Yvonne Bradford + David Osumi-Sutherland + + Nicole Vasilevsky + Jim Balhoff + Alexander Diehl + + + + + + + + + + + + + definition + + + + + + + + imported from + + + + + + + + expand expression to + + + + + + + + expand assertion to + + + + + + + + term replaced by + + + + + + + + UBPROP:0000007 + uberon + true + has_relational_adjective + Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'. + has_relational_adjective + + + + + + + + preferred term when talking about an instance of this class in Homo sapiens + + + + + + + + + latin term + + + + + + + + + plural term + + + + + + + + + abstract upper-level terms not directly useful for analysis + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + synonym_type_property + + + + + + + + consider + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + has_synonym_type + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_completed + + + + + + + + + A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al (PMID:19243617). + has_high_plasma_membrane_amount + + + + + A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al (PMID:19243617). + PMID:19243617 + + + + + + + + + A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al (PMID:19243617). + has_low_plasma_membrane_amount + + + + + A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al (PMID:19243617). + PMID:19243617 + + + + + + + + has_not_completed + + + + + + + + http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 ?Y + lacks_part + + + + + + + + http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y) + lacks_plasma_membrane_part + + + + + + + + + http://semanticscience.org/resource/SIO_000658 + direct_transformation_of + immediately transforms from + immediate_transformation_of + immediate_transformation_of + + + + + direct_transformation_of + https://orcid.org/0000-0002-6601-2165 + + + + + immediately transforms from + SIO:000658 + + + + + + + + + + + + + + + + + + + + A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. + CALOHA:TS-2035 + FMA:68646 + GO:0005623 + KUPO:0000002 + VHOG:0001533 + WBbt:0004017 + XAO:0003012 + cell + + The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one). + cell + + + + + A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. + CARO:mah + + + + + + + + + A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged. + BTO:0002290 + primary cell culture cell + unpassaged cultured cell + cell + primary cell line cell + Covers cells actively being cultured or stored in a quiescent state for future use. + primary cultured cell + + + + + A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged. + ReO:mhb + + + + + + + + OBSOLETE: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite growth/propagation in vitro as part of a immortal cell line. + + continuous cell line cell + permanent cell line cell + cell + Obsoleted in July 2013 and replaced by the CLO 'immortal cell line cell' class, as a result of CLO-OBI-CL alignment efforts. + +Covers cells actively being cultured or stored in a quiescent state for future use. + obsolete immortal cell line cell + true + + + + + OBSOLETE: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite growth/propagation in vitro as part of a immortal cell line. + ReO:mhb + + + + + + + + + A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment). + CARO:0000013 + cell in vivo + cell + + To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12). + native cell + + + + + A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment). + CARO:mah + + + + + + + + OBSOLETE: A classification of cells by the organisms within which they are contained. + CL:0000000 + CL:0000003 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its species. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate. + obsolete cell by organism + true + + + + + OBSOLETE: A classification of cells by the organisms within which they are contained. + FB:ma + + + + + + + + + + + + + + + + + + + + + + + + + + cell + fibroblast neural crest derived + + + + + + + + + + + + + + + + + + + + + neuronal receptor cell (sensu Animalia) + cell + neuronal receptor cell + + + + + + + + + A cell found in the embryo before the formation of all the gem layers is complete. + cell + early embryonic cell + + + + + A cell found in the embryo before the formation of all the gem layers is complete. + GOC:tfm + + + + + + + + + cell + migratory cranial neural crest cell + + + + + + + + Obsolete. Use PO:0000079 from Plant Ontology instead. An elongated cell with approximately wedge-shaped ends, found in the vascular cambium, which gives rise to the elements of the axial system in the secondary vascular tissues. + CL:0000274 + cell + xylem initial + xylem mother cell + replaced_by: PO:0000079 + obsolete fusiform initial + true + + + + + Obsolete. Use PO:0000079 from Plant Ontology instead. An elongated cell with approximately wedge-shaped ends, found in the vascular cambium, which gives rise to the elements of the axial system in the secondary vascular tissues. + ISBN:0471245208 + + + + + + + + + A cell in vitro that is or has been maintained or propagated as part of a cell culture. + cell + Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture. + cultured cell + + + + + A cell in vitro that is or has been maintained or propagated as part of a cell culture. + ReO:mhb + + + + + + + + + cell + migratory trunk neural crest cell + + + + + + + + CL:0000000 + CL:0000003 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate. + obsolete cell by class + true + + + + + + + + CL:0000140 + cell + obsolete dentine secreting cell + true + + + + + + + + + + + + + + + + + + + + + germline stem cell + cell + germ line stem cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + FMA:72290 + MA:0002765 + VHOG:0001531 + ncithesaurus:Spermatogenic_Cell + cell + male germ cell + + + + + + true + + + + + + + + + + cell + male germ line stem cell + + + + + + + + + + + + + + + + + + + + + + + + + + A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids. + BTO:0001275 + CALOHA:TS-0951 + EMAPA:31484 + FBbt:00004936 + FMA:84049 + WBbt:0006799 + cell + spermatocyte + + + + + + true + + + + + A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids. + GOC:tfm + MESH:A05.360.490.890.880 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa. + BTO:0001274 + CALOHA:TS-0950 + EMAPA:31486 + FBbt:00004942 + FMA:72294 + WBbt:0006800 + nematoblast + cell + spermatid + + + + + + true + + + + + A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa. + MESH:A05.360.490.890.860 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature male germ cell that develops from a spermatid. + BTO:0001277 + BTO:0002046 + CALOHA:TS-0949 + FBbt:00004954 + FMA:67338 + WBbt:0006798 + sperm cell + spermatozoid + spermatozoon + cell + sperm + + + + + + true + + + + + A mature male germ cell that develops from a spermatid. + GOC:tfm + MESH:A05.360.490.890 + + + + + + + + + + + + + + + + + + + + + + + An euploid male germ cell of an early stage of spermatogenesis. + BTO:0000958 + CALOHA:TS-2193 + EMAPA:31482 + FBbt:00004935 + FMA:72291 + cell + spermatogonium + + + + + An euploid male germ cell of an early stage of spermatogenesis. + MESH:A05.360.490.890.900 + + + + + + + + + + + + + + + + + + + + Female germ cell is a germ cell that supports female gamete production. + MA:0000388 + VHOG:0001530 + ncithesaurus:Egg + cell + female germ cell + + + + + + true + + + + + Female germ cell is a germ cell that supports female gamete production. + GOC:tfm + PMID:11023867 + PMID:20454446 + + + + + + + + + + + + + + + + + + + + + cell + female germ line stem cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + A female germ cell that has entered meiosis. + BTO:0000964 + CALOHA:TS-0711 + FBbt:00004886 + FMA:18644 + WBbt:0006797 + cell + oogonium + oocyte + + + + + + true + + + + + A female germ cell that has entered meiosis. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. + FMA:83673 + cell + oogonial cell + + + + + + true + + + + + An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. + BTO:0000369 + BTO:0003801 + CALOHA:TS-2191 + FBbt:00057012 + FMA:67343 + MA:0000388 + mature oocyte + ovum + cell + egg cell + + + + + A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. + GOC:tfm + ISBN:0721662544 + + + + + + true + + + + + + + + + + + + + + + + A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte. + BTO:0000953 + FBbt:00004878 + cell + nurse cell + invertebrate nurse cell + + + + + A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte. + GOC:tfm + PMID:15848391 + + + + + + + + + + + + + + + + + + + + + + + + + + cell + smooth muscle cell neural crest derived + + + + + + true + + + + + + + + + + + + + + + + + + + + + cell + CNS neuron (sensu Nematoda and Protostomia) + + + + + + + + + + + + + + + + + + + + + + + + + + cell + neuron neural crest derived + + + + + + true + + + + + + + + + + + + + + + FBbt:00005145 + cell + glioblast + + + + + + + + + + A cell that will develop into a neuron often after a migration phase. + BTO:0000930 + FBbt:00005146 + FMA:70563 + cell + neuroblast + + + + + A cell that will develop into a neuron often after a migration phase. + GOC:NV + http://en.wikipedia.org/wiki/Neuroblast + + + + + + + + + + + + + + + A cell of a platelike structure, especially a thickened plate of ectoderm in the early embryo, from which a sense organ develops. + neural placode cell + cell + neuroplacodal cell + + + + + A cell of a platelike structure, especially a thickened plate of ectoderm in the early embryo, from which a sense organ develops. + GOC:tfm + ISBN:0618947256 + + + + + + + + + An apocrine cell is a secretory cell characterized loss of part of the cytoplasm during the process of secretion - secretions are budded off through the plasma membrane producing membrane bound vesicles containing the secreted substance. + cell + apocrine cell + + + + + An apocrine cell is a secretory cell characterized loss of part of the cytoplasm during the process of secretion - secretions are budded off through the plasma membrane producing membrane bound vesicles containing the secreted substance. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. + CALOHA:TS-2086 + FMA:63368 + cell + stem cell + + + + + A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. + GOC:tfm + MESH:A11.872 + + + + + + + + + + + + + + + + + + + + + + + + A stem cell that self-renews as well as give rise to a single mature cell type. + FMA:70569 + unipotent stem cell + unipotential stem cell + cell + single fate stem cell + + + + + A stem cell that self-renews as well as give rise to a single mature cell type. + GOC:tfm + + + + + + + + + cell + epithelial fate stem cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119. + BTO:0000725 + CALOHA:TS-0448 + FMA:70337 + FMA:86475 + VHOG:0001485 + HSC + blood forming stem cell + hemopoietic stem cell + cell + colony forming unit hematopoietic + Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative. + hematopoietic stem cell + + + + + + true + + + + + A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119. + GOC:add + GOC:dsd + GOC:tfm + PMID:19022770 + http://en.wikipedia.org/wiki/Hematopoietic_stem_cell + + + + + + + + + + + + + + + + A progenitor cell committed to the erythroid lineage. + BTO:0004911 + cell + BFU-E + CFU-E + blast forming unit erythroid + burst forming unit erythroid + colony forming unit erythroid + erythroid stem cell + erythroid progenitor cell + + + + + + true + + + + + A progenitor cell committed to the erythroid lineage. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. + cell + + Originally this term had some plant germ line cell children. + germ line cell + + + + + A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A myeloid progenitor cell committed to the monocyte lineage. This cell is CD11b-positive, has basophilic cytoplasm, euchromatin, and the presence of a nucleolus. + CALOHA:TS-1195 + FMA:83553 + cell + CFU-M + colony forming unit macrophage + colony forming unit monocyte + monocyte stem cell + Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. + monoblast + + + + + + true + + + + + A myeloid progenitor cell committed to the monocyte lineage. This cell is CD11b-positive, has basophilic cytoplasm, euchromatin, and the presence of a nucleolus. + GOC:add + PMID:1104740 + http://en.wikipedia.org/wiki/Monoblast + http://www.copewithcytokines.de + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A fully differentiated eosinophil, a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Cells are also differentiated from other granulocytes by a small nuclear-to-cytoplasm ratio (1:3). This cell type is CD49d-positive. + polymorphonuclear leucocyte + polymorphonuclear leukocyte + mature eosinocyte + mature eosinophil leucocyte + mature eosinophil leukocyte + cell + Eosinophils are CD125-positive (IL-5R), GM-CSFR-positive, IL-3R-positive, VLA4-positive. They can also express MHC Class I & II, CD4, CD9, CD11a, CD11b, CD11c, CD13, CD15, CD16, CD17, CD18, CD24, CD25,CD28, CD29, CD32, CD33, CD35, CD37, CD39, CD43, CD44, CD45, CD45RB, CD45RO, CD46, CD47, CD48, CD49d, CD49f, CD50, CD52, CD53, CD54, CD55, CD58, CD59, CD62L, CD63, CD65, CD66, CD69, CD71, CD76, CD80, CD81, CD82, CD86, CD87, CD88, CD89, CD92, CD95, CD97, CD98, CD99, CD100, CD101, CD116, CD117, CD119, CD120, CD123, CD124, CD125, CD131, CD137, CD139, CD148, CD149, CD151, CD153, CD156, CD162, CD161, CD162, CD165, CD174, CD182, CD183, CD191, CD192, CD193, CD196, CD213, IL9R, ad integrin, beta-7 integrin, FceRI, IL13Ra1, TGFbR, PAFR, LTB4R, C3aR, CystLT1R, CystLT2R, fMLPR, CRTH2 (PGD2 receptor), histamine 4R, IDO, KYN, PAR-2, Siglec-8, Siglec-10, LIR1, LIR2, LIR3, LIR7, TLR7, TLR8, and VLA-4. Eosinophils can also secrete CXCL1, eotaxin-1, GM-CSF, IL-2, IL-3, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-16, IL-18, IFN-gamma, LTC4, MIP-1alpha, NGF, PAF, RANTES, substance P, TGF-alpha, TGF-beta, TNF-alpha, and VIP. + mature eosinophil + + + + + + true + + + + + A fully differentiated eosinophil, a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Cells are also differentiated from other granulocytes by a small nuclear-to-cytoplasm ratio (1:3). This cell type is CD49d-positive. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A myeloblast committed to the neutrophil lineage. This cell type is GATA-1 positive, C/EBPa-positive, AML-1-positive, c-myb-positive and has low expression of PU.1 transcription factor. + cell + neutrophilic granuloblast + These cells are CD11b-negative, CD15-negative, CD16-negative, CD35-negative, CD49d-positive, CD68-positive, lactotransferrin-negative, and fMLP receptor-negative. They are found in the Band 3 fraction. + neutrophilic myeloblast + + + + + + true + + + + + A myeloblast committed to the neutrophil lineage. This cell type is GATA-1 positive, C/EBPa-positive, AML-1-positive, c-myb-positive and has low expression of PU.1 transcription factor. + GOC:add + ISBN:0721601464 + PMID:12560239 + PMID:15514007 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A fully differentiated basophil, a granular leukocyte with an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. + CL:0000739 + polymorphonuclear leucocyte + polymorphonuclear leukocyte + BTO:0001026 + CALOHA:TS-0688 + mature basophil leucocyte + mature basophil leukocyte + cell + Mature basophils are also capable of producing IL-3, IL-5, IL-6, IL-8, IL-13, IL-25, CCL22, tslp, vegf, and LTC4. + mature basophil + + + + + + true + + + + + A fully differentiated basophil, a granular leukocyte with an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + PMID:18466030 + PMID:19231594 + PMID:20837449 + http://www.cap.org + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Consider using term 'pro-T cell ; CL:0000827' or the term 'thymocyte ; CL:0000893' or one of its children instead. + obsolete thymus processed stem cell + true + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Consider using term 'pro-B cell ; CL:0000826' or the term 'immature B cell ; CL:0000816 or one of its children instead. + obsolete bursa processed stem cell + true + + + + + + + + + + + + + + + + + + + + + + + + + + Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors. + BTO:0002881 + CALOHA:TS-2360 + FMA:86684 + NSC + neural stem cell + cell + neuronal stem cell + + + + + + true + + + + + Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors. + GOC:tfm + MESH:D058953 + PMID:15247488 + http://en.wikipedia.org/wiki/Neural_stem_cell + + + + + + + + + + + + + + + + + + + + + + + A stem cell that can give rise to multiple lineages of cells. + FMA:84789 + multi-fate stem cell + multifate stem cell + multipotent cell + multipotent stem cell + cell + multi fate stem cell + + + + + A stem cell that can give rise to multiple lineages of cells. + GOC:add + + + + + + + + + + + + A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. + BTO:0004730 + CMP + common myeloid precursor + cell + CFU-GEMM + CFU-S + colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte + multipotential myeloid stem cell + myeloid stem cell + pluripotent stem cell (bone marrow) + This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059). + common myeloid progenitor + + + + + + true + + + + + A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. + GOC:add + ISBN:0878932437 + MESH:D023461 + + + + + CMP + ISBN:0878932437 + + + + + CFU-GEMM + ISBN:0878932437 + + + + + CFU-S + ISBN:0878932437 + + + + + colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte + ISBN:0878932437 + + + + + multipotential myeloid stem cell + ISBN:0878932437 + + + + + myeloid stem cell + ISBN:0878932437 + + + + + pluripotent stem cell (bone marrow) + ISBN:0878932437 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell committed to the megakaryocyte and erythroid lineages. + CFU-EM + CFU-MegE + MEP + Meg/E progenitor + colony forming unit erythroid megakaryocyte + megakaryocyte/erythrocyte progenitor + megakaryocyte/erythroid progenitor cell + cell + MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2. + megakaryocyte-erythroid progenitor cell + + + + + + true + + + + + A progenitor cell committed to the megakaryocyte and erythroid lineages. + GOC:add + GOC:dsd + GOC:tfm + MESH:D055015 + PMID:16647566 + http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell + + + + + + + + + + + + + + + + + + + + A oligopotent progenitor cell committed to the lymphoid lineage. + CL:0000044 + CLP + common lymphocyte precursor + common lymphocyte progenitor + common lymphoid precursor + cell + ELP + committed lymphopoietic stem cell + early lymphocyte progenitor + lymphoid stem cell + lymphopoietic stem cell + CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative. + common lymphoid progenitor + + + + + + true + + + + + A oligopotent progenitor cell committed to the lymphoid lineage. + GOC:add + GOC:dsd + GOC:tfm + PMID:10407577 + PMID:16551251 + + + + + + + + + A stem cell from which all cells of the body can form. + FMA:84790 + totipotential stem cell + cell + totipotent stem cell + + + + + A stem cell from which all cells of the body can form. + GOC:add + GOC:tfm + + + + + + + + + cell + bone matrix secreting cell + + + + + + + + + + + + + + + A precursor cell with a limited number of potential fates. + BTO:0000125 + FMA:84782 + blast cell + cell + define using PATO mulit-potent or oligopotent? + non-terminally differentiated cell + + + + + A precursor cell with a limited number of potential fates. + SANBI:mhl + + + + + + + + + A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair. + BTO:0000222 + CALOHA:TS-0650 + FBbt:00005083 + FMA:70335 + VHOG:0001529 + cell + myoblast + + + + + A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair. + GOC:tfm + MESH:A11.635 + PMID:21849021 + + + + + + + + + + + + + + + A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. + BTO:0000452 + CALOHA:TS-0362 + FMA:63877 + VHOG:0001482 + cell + These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. + fibroblast + + + + + A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. + ISBN:0517223651 + MESH:A11.329.228 + MESH:D005347 + http://en.wikipedia.org/wiki/Fibroblast + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell. + BTO:0003607 + FMA:66783 + chrondoplast + cell + chondroblast + + + + + Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell. + GOC:tfm + GO_REF:0000034 + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell. + CL:0000053 + CL:0000139 + BTO:0001663 + FMA:70576 + amelocyte + enamel secreting cell + cell + non-encoded relationship from VSAO produces VSAO:0000066 + ameloblast + + + + + Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell. + GOC:tfm + GO_REF:0000034 + MESH:A11.436.107 + + + + + + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that secretes dentine matrix, is derived from the odontogenic papilla, and develops from a preodontoblast cell. + BTO:0001769 + CALOHA:TS-0696 + FMA:62999 + cell + legacy def: One of the cells forming the outer surface of dental pulp that produces tooth dentin. + odontoblast + + + + + Skeletogenic cell that secretes dentine matrix, is derived from the odontogenic papilla, and develops from a preodontoblast cell. + GO_REF:0000034 + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that produces cementum (a bony substance that covers the root of a tooth), is part of the odontogenic papilla, and develops from a precementoblast cell. + CL:0000859 + CALOHA:TS-1164 + FMA:63002 + cementum secreting cell + cell + Legacy def: A cell of ectomesenchymal origin that aids in the formation the cementum layer on the roots of teeth. + cementoblast + + + + + Skeletogenic cell that produces cementum (a bony substance that covers the root of a tooth), is part of the odontogenic papilla, and develops from a precementoblast cell. + GO_REF:0000034 + ISBN:0781733901 + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell. + BTO:0001593 + CALOHA:TS-0720 + FMA:66780 + cell + non-encoded relationships from VSAO - capable_of_producing VSAO:0000020 + osteoblast + + + + + Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell. + GO_REF:0000034 + MESH:A11.329.629 + + + + + + + + OBSOLETE: A classification of cells by their microscopic appearance. + CL:0000000 + CL:0000003 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its microscopic appearance. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate. + obsolete cell by histology + true + + + + + OBSOLETE: A classification of cells by their microscopic appearance. + FB:ma + GOC:tfm + + + + + + + + + + + + + + + + + + + A cell that has a filiform extrusion of the cell surface. + VHOG:0001532 + XAO:0000031 + cell + ciliated cell + + + + + A cell that has a filiform extrusion of the cell surface. + GOC:tfm + + + + + + + + + + + + + + + A neurectoderm derived cell that lines the neural lumen. + BTO:0001724 + FMA:70550 + ependymocyte + cell + ependymal cell + + + + + A neurectoderm derived cell that lines the neural lumen. + GOC:tfm + JB:jb + PMID:9550134 + + + + + + + + + + + + + + + + + + + + + A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. + BTO:0000414 + CALOHA:TS-2026 + CARO:0000077 + FBbt:00000124 + FMA:66768 + WBbt:0003672 + epitheliocyte + cell + epithelial cell + + + + + A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. + FB:ma + GOC:tfm + MESH:A11.436 + + + + + + + + + + + + + + + + + + + An epithelial cell that has a cillia. + FMA:70605 + cell + ciliated epithelial cell + + + + + An epithelial cell that has a cillia. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + cell + duct epithelial cell + + + + + + + + + cell + branched duct epithelial cell + + + + + + + + cell + obsolete epithelial cell of gland + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + An endothelial cell that lines the vasculature. + cuboidal endothelial cell of vascular tree + cell + blood vessel endothelial cell + + + + + + true + + + + + An endothelial cell that lines the vasculature. + GOC:tfm + + + + + + + + + + + + + + + cell + non-branched duct epithelial cell + + + + + + + + + + cell + barrier epithelial cell + + + + + + + + Obsolete. Use PO:0000066 from Plant Ontology instead. A cell that constitutes the mesophyll of a hydathode and is located between the xylem endings and the epidermis. Proposed to be involved in the retrieval of solutes from the xylem sap. + cell + replaced_by: PO:0000066 + obsolete epithem cell + true + + + + + Obsolete. Use PO:0000066 from Plant Ontology instead. A cell that constitutes the mesophyll of a hydathode and is located between the xylem endings and the epidermis. Proposed to be involved in the retrieval of solutes from the xylem sap. + ISBN:0471245208 + PMID:12662305 + + + + + + + + + + cell + columnar/cuboidal epithelial cell + + + + + + + + + CALOHA:TS-1249 + cell + squamous epithelial cell + + + + + + + + + + + + + + + + A flattened epithelial cell of mesenchymal origin that lines the serous cavity. + FMA:66773 + mesotheliocyte + cell + mesothelial cell + + + + + A flattened epithelial cell of mesenchymal origin that lines the serous cavity. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + cell + peridermal cell + + + + + + + + + + + + + + + + cell + stratified epithelial cell + + + + + + + + + + + + + + + + + + + A cell which moves among different tissues of the body, via blood, lymph, or other medium. + cell + circulating cell + + + + + A cell which moves among different tissues of the body, via blood, lymph, or other medium. + GOC:add + + + + + + + + + + + + + + + + + + + + A cell found predominately in the blood. + FMA:62844 + cell + blood cell + + + + + + true + + + + + A cell found predominately in the blood. + GOC:add + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + BTO:0004299 + lung epithelial cell + cell + epithelial cell of lung + + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the pancreas. + BTO:0000028 + pancreas epithelial cell + pancreatic epithelial cell + cell + epithelial cell of pancreas + + + + + + true + + + + + An epithelial cell of the pancreas. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. + CL:0000804 + CL:0000812 + BTO:0000782 + CALOHA:TS-1001 + FMA:62870 + VHOG:0001479 + T lymphocyte + T-cell + T-lymphocyte + cell + immature T cell + mature T cell + T cell + + + + + + true + + + + + A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + cell + germ line stem cell (sensu Vertebrata) + + + + + + + + + FBbt:00004861 + cell + germ line stem cell (sensu Nematoda and Protostomia) + + + + + + + + + + FBbt:00004929 + cell + male germ line stem cell (sensu Nematoda and Protostomia) + + + + + + + + + + FBbt:00004873 + cell + female germ line stem cell (sensu Nematoda and Protostomia) + + + + + + + + + + spermatogonial stem cell + cell + male germ line stem cell (sensu Vertebrata) + + + + + spermatogonial stem cell + PMID:19948499 + + + + + + + + + + cell + female germ line stem cell (sensu Vertebrata) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage of the reticuloendothelial system found on the luminal surface of the hepatic sinusoids involved in erythrocyte clearance. Markers include F4/80+, CD11b-low, CD68-positive, sialoadhesin-positive, CD163/SRCR-positive. Irregular, with long processes including lamellipodia extending into the sinusoid lumen, have flattened nucleus with cytoplasm containing characteristic invaginations of the plasma membrane (vermiform bodies); lie within the sinusoid lumen attached to the endothelial surface; derived from the bone marrow, form a major part of the body's mononuclear phagocyte system. + BTO:0000685 + FMA:14656 + hepatic macrophage + littoral cell of hepatic sinusoid + liver macrophage + macrophagocytus stellatus + stellate cell of von Kupffer + von Kupffer cell + cell + Markers: Mouse: F4/80+, CD11b-low, CD68+, sialoadhesin+, CD163/SRCR+; role or process: immune, antigen-presentation, clearance of senescent erythrocytes, iron metabolism. Kupffer cells are also reportedly C3aR-positive, CD14-low, CD54-positive, CD88-positive, and CD284-positive. They are also capable of producing IL-1, IL-6, TNF-alpha, nitric oxide, PGD2, PGE2, PGF2alpha, and TXA2. + Kupffer cell + + + + + + true + + + + + A tissue-resident macrophage of the reticuloendothelial system found on the luminal surface of the hepatic sinusoids involved in erythrocyte clearance. Markers include F4/80+, CD11b-low, CD68-positive, sialoadhesin-positive, CD163/SRCR-positive. Irregular, with long processes including lamellipodia extending into the sinusoid lumen, have flattened nucleus with cytoplasm containing characteristic invaginations of the plasma membrane (vermiform bodies); lie within the sinusoid lumen attached to the endothelial surface; derived from the bone marrow, form a major part of the body's mononuclear phagocyte system. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0517223651 + MESH:A11.329.372.588 + PMID:15771589 + PMID:17105582 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. This cell has the following markers: tartrate-resistant acid phosphatase type 5-positive, PU.1-positive, c-fos-positive, nuclear factor NF-kappa-B p100 subunit-positive, tumor necrosis factor receptor superfamily member 11A-positive and macrophage colony-stimulating factor 1 receptor-positive. + BTO:0000968 + CALOHA:TS-0721 + FMA:66781 + cell + chondroclast + Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. + osteoclast + + + + + + true + + + + + + true + + + + + A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. This cell has the following markers: tartrate-resistant acid phosphatase type 5-positive, PU.1-positive, c-fos-positive, nuclear factor NF-kappa-B p100 subunit-positive, tumor necrosis factor receptor superfamily member 11A-positive and macrophage colony-stimulating factor 1 receptor-positive. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + PMID:10428500 + PMID:15055519 + PMID:17380158 + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Consider using 'osteoclast ; CL:0000092' instead. + obsolete osteochondroclast + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A leukocyte with abundant granules in the cytoplasm. + BTO:0000539 + BTO:0001026 + CALOHA:TS-0422 + FMA:62854 + granular leucocyte + granular leukocyte + polymorphonuclear leukocyte + cell + granulocyte + + + + + + true + + + + + A leukocyte with abundant granules in the cytoplasm. + GOC:amm + GOC:tfm + MESH:A11.118.637.415 + MESH:D006098 + http://en.wikipedia.org/wiki/Granulocyte + + + + + + + + + + + + + + + cell + neuron associated cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. They are produced in bone marrow at a rate of 5e10-10e10/day and have a half-life of 6-8 hours. Neutrophils are CD15-positive, CD16-positive, CD32-positive, CD43-positive, CD181-positive, and CD182-positive. + poly + polymorphonuclear leucocyte + polymorphonuclear leukocyte + BTO:0003473 + PMN + mature neutrocyte + mature neutrophil leucocyte + mature neutrophil leukocyte + mature neutrophilic leucocyte + mature neutrophilic leukocyte + polymorphonuclear neutrophil + polynuclear neutrophilic leucocyte + polynuclear neutrophilic leukocyte + cell + Neutrophils are also capable of secreting GRO-alpha, IL-1beta, IL-1ra, IL-3, IL-12, IP-10, MIG, MIP-1alpha, MIP-1beta, TGF-beta, TNF-alpha, VEGF, and anti-microbial peptides. They can positively influence the chemotaxis of basophils, T-cells, monocytes, macrophages, dendritic cells, and other neutrophils. Neutrophils are also CD35-positive, CD64-positive, CD89-positive, CD184-positive, and fMLP receptor-positive Ly-6G-positive (mouse), TLR2-low, TLR4-low, and lineage-negative (CD2, CD3, CD5, CD9, CD19, CD36, CD49d, CD56, CD61, CD235a (glycophorin-A)). + mature neutrophil + + + + + + true + + + + + A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. They are produced in bone marrow at a rate of 5e10-10e10/day and have a half-life of 6-8 hours. Neutrophils are CD15-positive, CD16-positive, CD32-positive, CD43-positive, CD181-positive, and CD182-positive. + GOC:add + GOC:tfm + MESH:A11.118.637.415.583 + MESH:D009504 + PMID:11138776 + PMID:12560239 + PMID:15514007 + PMID:7880385 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. Progenitors leave bone marrow and mature in connective and mucosal tissue. Mature mast cells are found in all tissues, except the bloodstream. Their phenotype is CD117-high, CD123-negative, CD193-positive, CD200R3-positive, and FceRI-high. Stem-cell factor (KIT-ligand; SCF) is the main controlling signal of their survival and development. + BTO:0000830 + CALOHA:TS-0603 + FMA:66784 + histaminocyte + labrocyte + mastocyte + cell + tissue basophil + Mast cells are generally integrin beta-7-negative and positive for TLR2, TLR3, TLR4, TLR5, TLR7, TLR9, C3aR, C5aR, CR3, CR4, VEGF, FGF2, and renin. They can express MHC Class I and II on their surface. Activated murine mast cells (IgE+Antigen) were capable of expressing the following co-stimulatory molecules: CD95 (Fas), CD120b, CD137 (4-1BB), CD153 (CD30L), CD154 (CD40L), GITR, ICOSL, OX40L, PD-L1, and PD-L2. Note that there was some mouse strain variation. Mast cells have also been demonstrated to produce bFGF, CCL2, CCL4, CCL5, CCL11, CCL20, CXCL2, CXCL8, CXCL10, GM-CSF, IFN-gamma, IL-1, IL-2, IL-3, IL-8, IL-10, IL-11, IL-12, IL-13, IL-16, IL-25, IL-18, MIP-1, prostaglandin D2, SCF, TGF-beta, TNF-alpha, TSLP, VEGF, and XCL1. They express the transcription factors Transcription factors AP-1, GATA1, MITF, Notch2, PIAS3, PU.1, and STAT5. + mast cell + + + + + + true + + + + + A cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. Progenitors leave bone marrow and mature in connective and mucosal tissue. Mature mast cells are found in all tissues, except the bloodstream. Their phenotype is CD117-high, CD123-negative, CD193-positive, CD200R3-positive, and FceRI-high. Stem-cell factor (KIT-ligand; SCF) is the main controlling signal of their survival and development. + GOC:add + GOC:dsd + GOC:tfm + ISBN:068340007X + MESH:A11.329.427 + MESH:D008407 + PMCID:PMC1312421 + PMCID:PMC2855166 + PMID:15153310 + PMID:16455980 + PMID:19671378 + PMID:212366338 + PMID:9354811 + + + + + labrocyte + ISBN:0721601464 + + + + + mastocyte + ISBN:0721601464 + + + + + tissue basophil + ISBN:068340007X + + + + + + + + + + + + + + + + + + + + + + A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells. + neuroepithelial cell + BTO:0004301 + cell + The term "neuroepithelial cell" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710). + sensory epithelial cell + + + + + A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells. + GOC:tfm + ISBN:0517223651 + ISBN:0721662544 + + + + + + + + + Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. + BTO:0003811 + FBbt:00005125 + FMA:67313 + WBbt:0005113 + cell + interneuron + + + + + Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. + GOC:tfm + MESH:A08.663.358 + + + + + + + + + + + + + + + An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement. + BTO:0000312 + FMA:83617 + WBbt:0005409 + motoneuron + anterior horn cell + cell + motor neuron + + + + + An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement. + MESH:A08.663.655.500 + PMID:16875686 + + + + + + + + + + + + + + + + + + + + Any neuron having a sensory function; an afferent neuron conveying sensory impulses. + BTO:0001037 + FBbt:00005124 + FMA:84649 + WBbt:0005759 + cell + sensory neuron + + + + + Any neuron having a sensory function; an afferent neuron conveying sensory impulses. + ISBN:0721662544 + + + + + + + + + cell + polymodal neuron + + + + + + + + + A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body. + FMA:67282 + cell + bipolar neuron + + + + + A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body. + GOC:tfm + ISBN:0444009442 + + + + + + + + + Neuron with an axon and two or more dendrites. + FMA:67287 + cell + multipolar neuron + + + + + Neuron with an axon and two or more dendrites. + FMA:67287 + GOC:tfm + + + + + + + + + Neuron with two neurites that are fused grossly when they protrude from the soma and bifurcate a short distance from the soma. + FMA:67305 + cell + pseudounipolar neuron + + + + + Neuron with two neurites that are fused grossly when they protrude from the soma and bifurcate a short distance from the soma. + FMA:67305 + GOC:tfm + + + + + + + + + Neuron with one neurite that extends from the cell body. + FMA:67278 + cell + unipolar neuron + + + + + Neuron with one neurite that extends from the cell body. + FMA:67278 + GOC:nv + + + + + + + + + + + + + + + + + + + + A neruon whose cell body is within an autonomic ganglion. + FMA:80121 + cell + autonomic neuron + + + + + A neruon whose cell body is within an autonomic ganglion. + GOC:tfm + + + + + + + + + + + + + + + A neuron that uses acetylcholine as a vesicular neurotransmitter. + BTO:0004902 + FMA:84796 + WBbt:0006840 + cell + cholinergic neuron + + + + + A neuron that uses acetylcholine as a vesicular neurotransmitter. + GOC:tfm + + + + + + + + + cell + adrenergic neuron + + + + + + + + + + + + + + + cell + peptidergic neuron + + + + + + + + + A neuron that is part of nerve found outside the central nervous system. + FMA:84664 + cell + peripheral neuron + + + + + A neuron that is part of nerve found outside the central nervous system. + ISBN:0721662544 + + + + + + + + + cell + columnar neuron + columnar neuron + + + + + + + + + + + + + + + + + + + + A vertebrate phagocyte with a single nucleus. + BTO:0001433 + cell + mononuclear phagocyte + + + + + + true + + + + + A vertebrate phagocyte with a single nucleus. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + FMA:72552 + cell of surface ectoderm + surface ectoderm cell + cell + surface ectodermal cell + + + + + + + + + + An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm. + BTO:0001176 + CALOHA:TS-0278 + FMA:66772 + endotheliocyte + cell + From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]. + endothelial cell + + + + + An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm. + GOC:tfm + MESH:D042783 + PMID:21275341 + http://en.wikipedia.org/wiki/Endothelial_cell + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855 + + + + + + + + + Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance. + FBbt:00005128 + cell + pioneer neuron + + + + + Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance. + GOC:cvs + GOC:tfm + + + + + + + + + + + + + + + + + + + + + cell + CNS neuron (sensu Vertebrata) + + + + + + + + + cell + basket cell + + + + + + + + + + + + + + + Large intrinsic neuron located in the granule layer of the cerebellar cortex that extends its dendrites into the molecular layer where they receive contact from parallel fibers. The axon of the Golgi cell enters ramifies densely in the granule layer and enters into a complex arrangement with mossy fiber terminals and granule cell dendrites to form the cerebellar glomerulus. Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th ed. 2004. + Golgi cell + Golgi neuron + cerebellar Golgi neuron + cerebellum Golgi cell + cell + cerebellar Golgi cell + + + + + Large intrinsic neuron located in the granule layer of the cerebellar cortex that extends its dendrites into the molecular layer where they receive contact from parallel fibers. The axon of the Golgi cell enters ramifies densely in the granule layer and enters into a complex arrangement with mossy fiber terminals and granule cell dendrites to form the cerebellar glomerulus. Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th ed. 2004. + NIFSTD:sao1415726815 + + + + + + + + + BTO:0003393 + cell + granule cell + + + + + + + + + + + + + + + + The output neuron of the cerebellar cortex. + BTO:0001011 + CALOHA:TS-0845 + FMA:67969 + Purkinje neuron + Purkinje's cell + cerebellar Purkinje cell + cerebellum Purkinje cell + cell + Purkinje cell + + + + + The output neuron of the cerebellar cortex. + MESH:A08.186.211.132.810.428.200.212.600 + + + + + + + + + BTO:0002316 + cell + stellate neuron + + + + + + + + + + + + + + + cell + neuron associated cell (sensu Vertebrata) + + + + + + + + + + + + + + + FBbt:00005144 + cell + glial cell (sensu Nematoda and Protostomia) + + + + + + + + + + + + + + + A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. + BTO:0002606 + CALOHA:TS-0415 + FMA:54536 + neuroglial cell + cell + neuroglia + glial cell + + + + + + + + + + + It is unclear that all glial cells develop from a cell type called a glioblast. Radial glial cells develop from neuroepithelial cells and other types of glial cells develop from other precursors. Unless glioblast is meant to describe any cell that can give rise to a glial cell, this relationship needs further investigation. + + + + + A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. + MESH:A08.637 + + + + + + + + + + + + + + + A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together. + BTO:0000771 + CALOHA:TS-2027 + FMA:54538 + macrogliocyte + cell + macroglial cell + + + + + A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together. + GOC:tfm + ISBN:0721662544 + + + + + + + + + A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. + BTO:0000099 + CALOHA:TS-0060 + FMA:54537 + astrocytic glia + cell + Astrocytes are reportedly CD68-negative, CD121a-positive, CD184-positive, CD192-positive, CRF-positive, EGFR-positive, GFAP-positive, GLUT1-positive, MBP-negative, and NGFR-positive. + astrocyte + + + + + A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. + GOC:dsd + GOC:tfm + MESH:A08.637.200 + MESH:D001253 + PMID:11746784 + PMID:12162730 + PMID:12898703 + PMID:20942978 + http://en.wikipedia.org/wiki/Astrocyte + + + + + + + + + + + + + + + + + + + + + A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. + BTO:0000962 + CALOHA:TS-0709 + FMA:54540 + OLs + cell + oligodendroglia + Oligodendrocytes are reportedly MDP-positive and CD4-negative. + oligodendrocyte + + + + + + true + + + + + A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. + MESH:A08.637.600 + MESH:D009836 + http://en.wikipedia.org/wiki/Oligodendrocyte + + + + + OLs + PMID:8734446 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive. + brain macrophage + BTO:0000078 + BTO:0000962 + FMA:54539 + FMA:54540 + brain-resident macrophage + hortega cells + microglia + microgliocyte + cell + MF.microglia.CNS + Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD11c-high, CD14-negative, CD19-negative, CD45-low, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive. + microglial cell + + + + + + true + + + + + A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + MESH:D017628 + PMID:11517395 + PMID:12430718 + PMID:14561199 + PMID:14612429 + PMID:16177057 + PMID:19461673 + PMID:2089275 + http://en.wikipedia.org/wiki/Microglia + + + + + hortega cells + http://www.copewithcytokines.de/ + + + + + microgliocyte + http://www.copewithcytokines.de/ + + + + + + + + + cell + neuron associated cell (sensu Nematoda and Protostomia) + + + + + + + + + + + + + + + cell + gut endothelial cell + + + + + + + + + + + + + + + + + Cell of the single layer of large flattened cells covering the surface of the cornea. + CALOHA:TS-0172 + FMA:70614 + cell + corneal endothelial cell + + + + + Cell of the single layer of large flattened cells covering the surface of the cornea. + GOC:tfm + MESH:A09.371.060.067.31 + + + + + + + + + Ectoderm destined to be nervous tissue. + neurectoderm cell + cell + neurectodermal cell + + + + + Ectoderm destined to be nervous tissue. + GOC:tfm + ISBN:068340007X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs. + CL:0002452 + BTO:0002625 + BTO:0003298 + FMA:70546 + BMSC + bone marrow stromal cells + colony-forming unit-fibroblast + marrow stromal cells + cell + CFU-F + MSC + mesenchymal precursor cell + mesenchymal progenitor cells + mesenchymal stem cell + mesenchymal stromal cell + mesenchymal stromal cells + stem cells, mesenchymal + Many but not all mesenchymal cells derive from the mesoderm. MSCs are reportedly CD3-negative, CD4-negative, CD5-negative, CD8-negative, CD11a-negative, CD11b-negative, CD14-negative, CD19-negative, CD29-positive, CD31-negative, CD34-negative, CD38-negative, CD40-negative, CD44-positive, CD45-negative, CD49-positive, CD54-positive, CD66b-negative, CD79a-negative, CD80-negative, CD102-positive, CD106-positive, CD117-positive, CD121a-positive, CD121b-positive, CD123-positive, CD124-positive, CD133-negative, CD146-positive, CD166-positive, CD271-positive, B220-negative, Gr1-negative, MHCI-positive, MHCII-negative, SSEA4-negative, sca1-positive, Ter119-negative, and glycophorin A-negative. Cultured MSCs are capable of producing stem cell factor, IL7, IL8, IL11, TGF-beta, cofilin, galectin-1, laminin-receptor 1, cyclophilin A, and MMP-2. + mesenchymal stem cell + + + + + + true + + + + + A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs. + FB:ma + GOC:dsd + PMCID:PMC2613570 + PMID:10102814j + PMID:16923606 + PMID:17986482 + PMID:19960544 + http://en.wikipedia.org/wiki/Mesenchymal_stem_cell + http://www.copewithcytokines.de/cope.cgi?key=mesenchymal%20stem%20cells + + + + + marrow stromal cells + PMID:11378515 + + + + + MSC + PMID:11378515 + + + + + mesenchymal progenitor cells + MESH:D044982 + + + + + + mesenchymal stromal cells + + + + + + stem cells, mesenchymal + MESH:D044982 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An inactive fibroblast; cytoplasm is sparse, endoplasmic reticulum is scanty with flattened nucleus. Term used by some histologists; when fibroblasts become relatively inactive in fiber formation. However, this cell has the potential for fibrogenesis in quiescent connective tissue of the adult, as well as during development, other histologists prefer to use the term fibroblast in all circumstances. These cells represent ~0.5% of peripheral blood leukocytes. + FMA:63879 + cell + Cultured human fibrocytes are MHCI-positive, MHCII-positive, CD1a-negative, CD3-negative, CD4-negative, CD8-negative, CD10-negative, CD11b-positive, CD13-positive, CD14-negative, CD16-negative, CD18-positive, CD19-negative, CD25-negative, CD29-positive, CD32-positive, CD33-negative, CD34-positive, CD38-negative, CD40-positive, CD44-negative, CD45RO-positive, CD49a-positive, CD49b-positive, CD49c-negative, CD49d-negative, CD49e-positive, CD49f-negative, CD56-negative, CD58-positive, CD61-positive, CD64-positive, CD70-negative, CD71-positive, CD80-positive, CD83-negative, CD86-positive, CD103-negative, CD105-positive, CD181-positive, CD182-negative, CD183-positive, CD184-positive, CD185-negative, CD186-negative, CD191-positive, CD192-negative, CD193-positive, CD194-positive, CD195-positive, CD196-negative, CD197-positive, CD199-positive, desmin-negative, F4/80-positive, Gr1-positive, LSP-1-positive, MHCI-positive, MHCII-positive, alpha-SMA-negative, TCRab-negative, TCRgd-negative, and vimentin-positive. Fibrocytes are also capable of secreting angiogenin, bFGF, CCL2, CCL3, CCL4, CCL8, CXCL1, type I collagen, type III collagen, CTGF, fibronectin, GM-CSF, IL-1a, IL-6, IL-8, IL-10, M-CSF, MMP-9, PDGF-A, TGF-alpha, TGF-beta1, TNF-alpha, and VEGF-A. + fibrocyte + + + + + + true + + + + + An inactive fibroblast; cytoplasm is sparse, endoplasmic reticulum is scanty with flattened nucleus. Term used by some histologists; when fibroblasts become relatively inactive in fiber formation. However, this cell has the potential for fibrogenesis in quiescent connective tissue of the adult, as well as during development, other histologists prefer to use the term fibroblast in all circumstances. These cells represent ~0.5% of peripheral blood leukocytes. + GOC:dsd + GOC:tfm + ISBN:0412046911 + ISBN:0517223651 + PMID:11641248 + PMID:15010326 + PMID:17607298 + PMID:18222966 + PMID:8790603 + PMID:9551999 + http://en.wikipedia.org/wiki/Fibrocyte + + + + + + + + + + + + + + + + A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. + CL:0000450 + BTO:0000443 + CALOHA:TS-0012 + FMA:63880 + adipocyte + adipose cell + cell + fat cell + + + + + A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. + MESH:A11.329.114 + + + + + + + + + + + + + + + + + + + + + A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi. + bone cell + BTO:0002038 + CALOHA:TS-1167 + FMA:66779 + VSAO:0000124 + cell + VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118 + osteocyte + + + + + A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi. + GOC:tfm + MESH:A11.329.629.500 + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell. + BTO:0000249 + CALOHA:TS-0138 + FMA:66782 + cartilage cell + cell + chondrocyte + + + + + Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell. + GO_REF:0000034 + MESH:A11.329.171 + + + + + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that secretes dentine matrix, is derived from odontogenic papilla. Embedded in dentine tissue, and is the transformation of a non-terminally differentiated odontoblast cell. + cell + odontocyte + + + + + Skeletogenic cell that secretes dentine matrix, is derived from odontogenic papilla. Embedded in dentine tissue, and is the transformation of a non-terminally differentiated odontoblast cell. + GO_REF:0000034 + + + + + + + + + + + + + + + + + + + + + An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth. + FMA:63003 + cell + CHECK: wikipedia says that cementocytes no longer produce cementum, but the phenoscape def is: Skeletogenic cell that produces cementum, is part of the odontogenic papilla, and is a transformation of a cementoblast cell (no change to existing def). + cementocyte + + + + + An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth. + ISBN:0781733901 + + + + + + + + + A cell occurring in the peripheral part of the vitreous body of the eye that may be responsible for production of hyaluronic acid and collagen. + BTO:0004271 + FMA:70620 + cell + vitreous cell + hyalocyte + + + + + A cell occurring in the peripheral part of the vitreous body of the eye that may be responsible for production of hyaluronic acid and collagen. + GOC:tfm + PMID:19073178 + + + + + + + + + cell + guidepost cell + + + + + + + + OBSOLETE: A classification of cells by their primary end goal or behavior. + CL:0000000 + CL:0000003 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its function or behavior. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate. + obsolete cell by function + true + + + + + OBSOLETE: A classification of cells by their primary end goal or behavior. + FB:ma + + + + + + + + + + + + + + + A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response. + APC + cell + Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constitutively express MHC Class II as well as costimulatory molecules, and thus can initiate immune responses via T cells. + professional antigen presenting cell + + + + + A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response. + GOC:add + ISBN:0781735149 + + + + + + + + + cell + simple columnar epithelial cell + + + + + + + + + A pigment cell is a cell that contains pigment granules. + VHOG:0001678 + chromatocyte + chromatophore + cell + pigment cell + + + + + A pigment cell is a cell that contains pigment granules. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. + CL:0000572 + BTO:0000847 + CALOHA:TS-0613 + FMA:70545 + VHOG:0001679 + melanophore + cell + melanocyte + + + + + + true + + + + + A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. + SANBI:mhl + + + + + + + + + pigment cell + cell + visual pigment cell + + + + + + + + + + + + + + + + + A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules. + CALOHA:TS-2085 + FMA:86494 + cell + glandular epithelial cell + + + + + A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules. + GOC:tfm + + + + + + + + + + + + + + + + + + + A cell that specializes in controlled release of one or more substances. + BTO:0003659 + FMA:86916 + cell + secretory cell + + + + + A cell that specializes in controlled release of one or more substances. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct. + FMA:16014 + cell + exocrine cell + + + + + A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct. + ISBN:0198547684 + + + + + + + + + + A cell that secretes glycosaminoglycans. + GAG secreting cell + hyaluronic acid secreting cell + cell + glycosaminoglycan secreting cell + + + + + A cell that secretes glycosaminoglycans. + GOC:tfm + + + + + + + + + + + + + + + + + + + cell + protein secreting cell + + + + + + + + + + + A cell that is usually basal in position, cuboidal with round nucleus, short microvilli, secretes pepsinogen. + FMA:62902 + chief cell of stomach + gastric chief cell + pepsinogen secreting cell + zymogenic cell + cell + peptic cell + + + + + A cell that is usually basal in position, cuboidal with round nucleus, short microvilli, secretes pepsinogen. + GOC:tfm + + + + + + + + OBSOLETE: A cell of the lymphoid series that can react with antigen to produce specific cell products called antibodies. Various cell subpopulations, often B cells, can be defined, based on the different classes of immunoglobulins that they synthesize. + cell + Consider using 'B cell ; CL:0000236' or one of its children instead. + obsolete antibody secreting cell + true + + + + + + + + + + + + + + + + + + + + A cell that specializes in secretion of surfactant in the alveoli of the lung. + cell + surfactant secreting cell + + + + + + true + + + + + A cell that specializes in secretion of surfactant in the alveoli of the lung. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Epithelial progenitor cell of the lung. Clara cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Clara cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium. + BTO:0004811 + FMA:14119 + Clara cell of bronchiole + bronchiolar non-ciliated cell + cell + Clara cell + + + + + + true + + + + + Epithelial progenitor cell of the lung. Clara cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Clara cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium. + GOC:tfm + PMID:12107102 + PMID:7905712 + + + + + + + + + cell + seromucus secreting cell + + + + + + + + + + + + + + + A cell of the epithelial lining that produce and secrete mucins. + BTO:0001540 + FMA:13148 + http://en.wikipedia.org/wiki/Goblet_cell + chalice cell + cell + goblet cell + + + + + A cell of the epithelial lining that produce and secrete mucins. + MESH:A03.492.411.369.320 + + + + + + + + + + + + + + + + + + + + cell + acid secreting cell + + + + + + true + + + + + + + + + + + A large, oval stomach epithelial cell with a central nucleus; source of gastric acid. Secretes HCl. + BTO:0001780 + FMA:62901 + oxyntic cell + cell + parietal cell + + + + + A large, oval stomach epithelial cell with a central nucleus; source of gastric acid. Secretes HCl. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + + + + + A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions. + FMA:83809 + endocrinocyte + cell + endocrine cell + + + + + A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions. + MESH:A06.407 + + + + + + + + + + An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas. + BTO:0003865 + FMA:62930 + cell + enteroendocrine cell + + + + + An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas. + GOC:tfm + SANBI:mhl + + + + + + + + + + + An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. + BTO:0002691 + FMA:83810 + neurosecretory cell + cell + neuroendocrine cell + + + + + An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. + MESH:A06.688 + + + + + + + + + + + + + + + A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system. + BTO:0000259 + FMA:69263 + phaeochromocyte + cell + chromaffin cell + + + + + A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system. + MESH:A06.224.161 + + + + + + + + + + + + + + + + + + + cell + peptide hormone secreting cell + + + + + + + + + + + + + + + + + + + BTO:0000783 + cell + insulin secreting cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A cell that secretes insulin and is located towards the center of the islets of Langerhans. + beta cell + BTO:0000783 + EV:0200009 + FMA:70586 + MA:0002419 + ncithesaurus:Beta_Cell + B-cell of pancreatic islet + beta cell of pancreatic islet + insulin-secreting cell + pancreatic B cell + pancreatic B-cell + pancreatic beta cell + pancreatic islet core + type B enteroendocrine cell + cell + beta cell islet + Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression. + type B pancreatic cell + + + + + + true + + + + + + true + + + + + A cell that secretes insulin and is located towards the center of the islets of Langerhans. + GOC:tfm + ISBN:0517223651 + http://en.wikipedia.org/wiki/Pancreatic_b_cell + + + + + beta cell + ZFA:0009102 + + + + + B-cell of pancreatic islet + FMA:70586 + + + + + beta cell of pancreatic islet + FMA:70586 + + + + + insulin-secreting cell + FMA:70586 + + + + + pancreatic B-cell + FMA:70586 + + + + + pancreatic beta cell + FMA:70586 + + + + + pancreatic islet core + MA:0002419 + + + + + type B enteroendocrine cell + FMA:70586 + + + + + beta cell islet + MA:0002419 + + + + + + + + + + + + + + + + + + + A cell that secretes glucagon. + FMA:84045 + glucagon-secreting cell + cell + glucagon secreting cell + + + + + A cell that secretes glucagon. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon. + BTO:0000990 + FMA:70585 + alpha cell of iselt of Langerhans + pancreatic alpha cell + cell + pancreatic A cell + + + + + A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + cell + somatostatin secreting cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin. + BTO:0000803 + FMA:70587 + D-cell of pancreatic islet + delta cell of islet + delta cell of pancreatic islet + pancreatic D-cell + pancreatic delta cell + somatostatin-secreting pancreatic cell + cell + pancreatic D cell + + + + + A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin. + FMA:0517223651 + GOC:tfm + + + + + + + + + + + + + + + + + + + cell + steroid hormone secreting cell + + + + + + + + + + + + + + + + + + + + + + A progesterone secreting cell in the corpus luteum. The large luteal cells develop from the granulosa cells. The small luteal cells develop from the theca cells. + BTO:0003939 + FMA:18688 + lutein cell + cell + luteal cell + + + + + A progesterone secreting cell in the corpus luteum. The large luteal cells develop from the granulosa cells. The small luteal cells develop from the theca cells. + MESH:A05.360.319.114.630.278.400 + + + + + + + + + + + + + + + + + + + cell + ecdysteroid secreting cell + + + + + + + + + + + + + + + + + + + cell + testosterone secreting cell + + + + + + + + + + + + + + + A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis. + interstitial cell + BTO:0000755 + CALOHA:TS-1150 + EMAPA:29655 + FMA:72297 + interstitial cell of Leydig + cell + Note that the Amphibian Anatomy Ontology (AA) has a class 'leydig cells' but this is unrelated + Leydig cell + + + + + A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis. + GOC:tfm + PMID:12050120 + + + + + + + + + + + + + + + + + + + cell + progesterone secreting cell + + + + + + + + + + + + + + + + + + + cell + estradiol secreting cell + + + + + + + + + A cell whose primary function is intermediary metabolism. + cell + metabolising cell + + + + + A cell whose primary function is intermediary metabolism. + FB:ma + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated. + BTO:0000575 + CALOHA:TS-0454 + FMA:14515 + cell + Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive. + hepatocyte + + + + + The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated. + GOC:tfm + ISBN:0412046911 + MESH:A11.436.348 + PMID:19717280 + http://en.wikipedia.org/wiki/Hepatocyte + + + + + + + + + A cell whose primary function is to shorten. + cell + contractile cell + + + + + A cell whose primary function is to shorten. + FB:ma + + + + + + + + + + + + + + + + + Contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament. + BTO:0002309 + CALOHA:TS-2379 + FMA:67799 + basket epithelial cell + myoepitheliocyte + cell + myoepithelial cell + + + + + Contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + An animal cell that has characteristics of both a fibroblast cell and a smooth muscle cell. + MFB + cell + Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha. + myofibroblast cell + + + + + An animal cell that has characteristics of both a fibroblast cell and a smooth muscle cell. + GOC:dsd + GOC:tfm + MESH:D058628 + PMID:19800625 + PMID:20630469 + + + + + MFB + PMID:8731193 + + + + + + + + + + + + + + + + + + A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. + BTO:0000888 + BTO:0000902 + CALOHA:TS-2032 + FBbt:00005074 + FMA:67328 + WBbt:0003675 + muscle fiber + myocyte + cell + muscle cell + + + + + A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. + MESH:A11.620 + + + + + + + + + + + + + + + + + + + A somatic cell located in skeletal muscle. + BTO:0004392 + CALOHA:TS-2158 + FMA:9727 + skeletal muscle cell + cell + cell of skeletal muscle + + + + + A somatic cell located in skeletal muscle. + GOC:tfm + + + + + + + + + + + + + + + A muscle cell that develops tension more slowly than a fast-twitch fiber. + FMA:84448 + cell + slow muscle fiber + slow muscle cell + + + + + A muscle cell that develops tension more slowly than a fast-twitch fiber. + GOC:tfm + ISBN:0323052908 + + + + + slow muscle fiber + ISBN:0815316208 + + + + + + + + + + + + + + + A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron . + glycolytic muscle fiber + cell + fast muscle cell + + + + + A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron . + GOC:tfm + ISBN:0323052908 + + + + + + + + + + + + + + + + A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). + CL:0000191 + BTO:0004576 + CALOHA:TS-2159 + FMA:14072 + SMCs + myocytes, smooth muscle + smooth muscle fiber + non-striated muscle cell + cell + smooth muscle cell + + + + + A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). + MESH:A11.620.520 + MESH:D032389 + PMID:9315361 + http://en.wikipedia.org/wiki/Smooth_muscle_cell + + + + + SMCs + PMID:9315361 + + + + + myocytes, smooth muscle + MESH:D032389 + + + + + + + + + + + + + + + + + + + A striated muscle cell of an arthropod heart that participates in heart contraction. + CL:0000466 + cell + cardiac muscle cell (sensu Arthopoda) + + + + + A striated muscle cell of an arthropod heart that participates in heart contraction. + MESH:A11.620.500 + + + + + + + + cell + Consider CL:0002072. + obsolete nodal cardiac cell + true + + + + + + + + cell + obsolete Purkinje fiber + true + + + + + + + + + + + + + + + + + + + + + + + + + + + cell + flight muscle cell + + + + + + + + + cell + receptor cell + + + + + + + + + The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings. + nociceptor + nocireceptor + cell + Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship + pain receptor cell + + + + + The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings. + MESH:A08.800.550.700.650 + + + + + + + + + + + + + + + + + + + A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system. + cell + mechanoreceptor + mechanoreceptor cell + + + + + A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system. + MESH:A08.800.550.700.500 + + + + + mechanoreceptor + MP:0000972 + + + + + + + + + + + + + + + + + + + cell + touch receptor cell + + + + + + + + + + + + + + + + + + + + + + A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. + CL:0000201 + FMA:62364 + auditory receptor cell + cochlear hair cell + cell + inner ear hair cell + inner ear receptor cell + In mammals these cells are located in the organ of Corti. + auditory hair cell + + + + + A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. + MESH:A08.663.650.250 + + + + + inner ear hair cell + GO:0060119 + + + + + inner ear receptor cell + GO:0060119 + + + + + + + + + + + + + + + + + + + cell + gravity sensitive cell + + + + + + + + + cell + acceleration receptive cell + + + + + + + + + + + + + + + + + + + A cellular receptor which mediates the sense of temperature. Thermoreceptor cells in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain. + cell + thermoreceptor cell + + + + + A cellular receptor which mediates the sense of temperature. Thermoreceptor cells in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain. + GOC:tfm + MESH:A08.800.550.700.840 + MP:0000971 + + + + + + + + + + + + + + + + + + + A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood. + cell + chemoreceptor cell + + + + + A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood. + MESH:A08.800.550.700.120 + + + + + + + + + + + + + + + + + + + + + + + + + BTO:0004185 + FMA:67860 + Wikipedia:Olfactory_receptor_neuron + Schultze's cell + odorant receptor cell + olfactory receptor neuron + olfactory sensory neuron + cell + olfactory receptor cell + + + + + + + + + cell + pH receptor cell + + + + + + + + + + + + + + + + + + + + + + + + + + + A cell type found in the spherical or ovoid clusters of receptor cells found mainly in the epithelium of the tongue and constituting the end organs of the sense of taste. + FMA:67910 + taste bud cell + cell + taste receptor cell + + + + + A cell type found in the spherical or ovoid clusters of receptor cells found mainly in the epithelium of the tongue and constituting the end organs of the sense of taste. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + + A cell specialized to detect and transduce light. + BTO:0001060 + CALOHA:TS-0868 + FBbt:00004211 + FMA:86740 + cell + photoreceptor cell + + + + + + true + + + + + A cell specialized to detect and transduce light. + MESH:A08.663.650.650 + + + + + + + + + A cell whose function is determined by the generation or the reception of an electric signal. + cell + electrically active cell + + + + + A cell whose function is determined by the generation or the reception of an electric signal. + FB:ma + + + + + + + + + A cell that takes up and metabolizes substances. + cell + absorptive cell + + + + + A cell that takes up and metabolizes substances. + CL:CVS + + + + + + + + + A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism. + boundary cell + cell + lining cell + + + + + A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism. + JB:jb + + + + + + + + + + + + + + + + + + + + + + A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid. + BTO:0003652 + CALOHA:TS-0995 + FMA:66786 + synoviocyte + hyaluronic acid secreting cell + cell + synovial cell + + + + + + true + + + + + A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid. + GOC:tfm + ISBN:0721662544 + PMID:17942474 + + + + + + + + + A cell whose primary function is to prevent the transport of stuff across compartments. + cell + barrier cell + + + + + A cell whose primary function is to prevent the transport of stuff across compartments. + JB:jb + + + + + + + + + + + + + + + + + + + + + + + A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier. + BTO:0001238 + CALOHA:TS-0922 + FMA:72298 + VHOG:0001348 + cell + Sertoli cell + + + + + + true + + + + + A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier. + MESH:A05.360.444.849.789 + + + + + + + + + cell + insulating cell + + + + + + + + + + + + + + + + + A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons. + Schwann cell + peripheral neuroglial cell + CALOHA:TS-0898 + FMA:62121 + neurilemmal cell + cell + myelinating Schwann cell + + + + + A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons. + GOC:cvs + GOC:tfm + MESH:A08.637.800 + + + + + + + + + + + + + + + + + + + A cell that moves by its own activities. + cell + motile cell + + + + + A cell that moves by its own activities. + FB:ma + + + + + + + + CL:0000000 + CL:0000003 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell in a multicellular organiam, apart from a zygote, can potentially be classified by its lineage. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate. + obsolete cell by lineage + true + + + + + + + + + + + + + + + A cell of the outer of the three germ layers of the embryo. + FMA:72549 + ectoderm cell + cell + ectodermal cell + + + + + A cell of the outer of the three germ layers of the embryo. + MESH:A16.254.425.273 + + + + + + + + + + + + + + + A cell of the middle germ layer of the embryo. + FMA:72554 + mesoblast + mesoderm cell + cell + mesodermal cell + + + + + A cell of the middle germ layer of the embryo. + MESH:A16.254.425.660 + + + + + + + + + + + + + + + A cell of the inner of the three germ layers of the embryo. + FMA:72555 + endoderm cell + cell + endodermal cell + + + + + A cell of the inner of the three germ layers of the embryo. + MESH:A16.254.425.407 + + + + + + + + OBSOLETE: A classification of cells by the number of their nuclei. + CL:0000000 + CL:0000003 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its nuclear number (note that this term was previously used as a parent class of enucleate cell). If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate. + obsolete cell by nuclear number + true + + + + + OBSOLETE: A classification of cells by the number of their nuclei. + FB:ma + GOC:tfm + + + + + + + + + + + + + + + + + + + + A cell that lacks a nucleus. + FMA:68647 + non-nucleated cell + cell + anucleate cell + + + + + A cell that lacks a nucleus. + FB:ma + + + + + + + + + + + + + + + + + + + A cell with a single nucleus. + cell + single nucleate cell + + + + + A cell with a single nucleus. + FB:ma + GOC:tfm + + + + + + + + + + + + + + + + + + + cell + binucleate cell + + + + + + + + + + + + + + + + + + + A cell with more than one nucleus. + AEO:0000203 + WBbt:0008074 + syncitium + syncytial cell + syncytium + cell + multinucleate cell + + + + + A cell with more than one nucleus. + FB:ma + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Refers to an activated mature lymphocyte phenotype rather than a distinct cell type; consider using 'lymphocyte ; CL:0000542' or one of its children instead. + obsolete lymphoblast + true + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Refers to an activated mature T lymphocyte phenotype rather than a distinct cell type; consider using 'T cell ; CL:0000084' or one of its children instead. + obsolete T lymphoblast + true + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Refers to an activated mature B lymphocyte phenotype rather than a distinct cell type; consider using 'B cell ; CL:0000236' or one of its children instead. + obsolete B lymphoblast + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. + BTO:0000424 + CALOHA:TS-0290 + FMA:81100 + RBC + red blood cell + cell + erythrocyte + + + + + + true + + + + + A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. + GOC:tfm + MESH:A11.118.290 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. + BTO:0000132 + CALOHA:TS-0803 + FMA:62851 + anucleate thrombocyte + blood platelet + enucleate thrombocyte + cell + Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF. + platelet + + + + + + true + + + + + A non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation. + GOC:add + GOC:dsd + GOC:tfm + MESH:A11.118.188 + MESH:D001792 + PMID:11110672 + PMID:16987572 + PMID:17204662 + PMID:17479180 + PMID:20414831 + http://en.wikipedia.org/wiki/Platelet + + + + + + + + + + + + + + + + + + + + + + Any cell capable of ingesting particulate matter via phagocytosis. + BTO:0001044 + FMA:83806 + cell + phagocyte + + + + + Any cell capable of ingesting particulate matter via phagocytosis. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. + BTO:0000801 + CALOHA:TS-0587 + FMA:63261 + FMA:83585 + histiocyte + cell + Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid. + macrophage + + + + + + true + + + + + A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. + GOC:add + GOC:tfm + GO_REF:0000031 + PMID:16213494 + PMID:1919437 + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphocyte of B lineage with the phenotype CD19-positive, CD20-positive, and capable of B cell mediated immunity. + BTO:0000776 + CALOHA:TS-0068 + FMA:62869 + VHOG:0001480 + B lymphocyte + B-cell + B-lymphocyte + cell + B cell + + + + + + true + + + + + A lymphocyte of B lineage with the phenotype CD19-positive, CD20-positive, and capable of B cell mediated immunity. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + cell + keratinizing barrier epithelial cell + + + + + + + + + cell + non keratinizing barrier epithelial cell + + + + + + + + + cell + brush border epithelial cell + + + + + + + + + + cell + stratified squamous epithelial cell + + + + + + + + + cell + stratified cuboidal epithelial cell + + + + + + + + + + + + + + + + A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber. + FMA:70548 + Merkel's cell + cell + Merkel cell + + + + + + PMID:19782676 + + + + + A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber. + MESH:A08.800.550.700.500.425 + + + + + + + + + + + + + + + A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. + cell + glial cell (sensu Vertebrata) + + + + + A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. + MESH:A08.637 + + + + + + + + + + A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium. + FMA:66778 + cell + transitional epithelial cell + + + + + A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium. + GOC:tfm + ISBN:0721662544 + + + + + + + + Obsolete. Use PO:0000353 from Plant Ontology instead. Cell in exodermis or endodermis that remains thin walled when the associated cells develop thick secondary walls. Has casparian strip in endodermis. + cell + replaced_by: PO:0000353 + obsolete passage cell + true + + + + + Obsolete. Use PO:0000353 from Plant Ontology instead. Cell in exodermis or endodermis that remains thin walled when the associated cells develop thick secondary walls. Has casparian strip in endodermis. + ISBN:0471245208 + + + + + + + + + cell + Mauthner neuron + + + + + + + + + Type of neuron that is a primary mechanosensory cell, with peripheral neurites innervating the skin with free nerve endings. + AAO:0010316 + EFO:0003711 + VHOG:0001484 + Rohon Beard cell + Rohon-Beard cell + cell + RB neuron + Rohon-Beard neuron + + + + + Type of neuron that is a primary mechanosensory cell, with peripheral neurites innervating the skin with free nerve endings. + VHOG:0001484 + + + + + Rohon Beard cell + VHOG:0001484 + + + + + RB neuron + VHOG:0001484 + + + + + + + + Obsolete. Use PO:0020047 from Plant Ontology instead. A diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. + pollen mother cell + primary sporogenous cell + cell + replaced_by: PO:0020047 + obsolete microsporocyte + true + + + + + Obsolete. Use PO:0020047 from Plant Ontology instead. A diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. + ISBN:0471245208 + + + + + + + + + cell + hatching gland cell + + + + + + + + Obsolete. Use PO:0020019 from Plant Ontology instead. A haploid (1n) spore developing into a female gametophyte in heterosporous plants. + cell + replaced_by: PO:0020019 + obsolete megaspore + true + + + + + Obsolete. Use PO:0020019 from Plant Ontology instead. A haploid (1n) spore developing into a female gametophyte in heterosporous plants. + ISBN:0471245208 + + + + + + + + + cell + extramedullary cell + + + + + + + + Obsolete. Use PO:0020048 from Plant Ontology instead. A haploid (1n) spore developing into a male gametophyte in heterosporous plants; the uninucleate pollen grain in seed plants. + cell + replaced_by: PO:0020048 + obsolete microspore + true + + + + + Obsolete. Use PO:0020048 from Plant Ontology instead. A haploid (1n) spore developing into a male gametophyte in heterosporous plants; the uninucleate pollen grain in seed plants. + ISBN:0471245208 + + + + + + + + + cell + eurydendroid cell + + + + + + + + Obsolete. Use PO:0020094 from Plant Ontology instead. The female gamete of plants. + female gametophyte egg cell + cell + replaced_by: PO:0020094 + obsolete egg cell + true + + + + + Obsolete. Use PO:0020094 from Plant Ontology instead. The female gamete of plants. + TAIR:lr + + + + + + + + + + cell + eukaryotic cell + + + + + + + + + cell + uric acid accumulating cell + + + + + + + + + cell + Mycetozoan cell + + + + + + + + Obsolete. Use PO:0000355 from Plant Ontology instead. A fiber like tracheid in the secondary xylem; commonly thick walled, with pointed ends and bordered pits that have lenticular to slit like apertures. + cell + replaced_by: PO:0000355 + obsolete fiber tracheid + true + + + + + Obsolete. Use PO:0000355 from Plant Ontology instead. A fiber like tracheid in the secondary xylem; commonly thick walled, with pointed ends and bordered pits that have lenticular to slit like apertures. + ISBN:0471245208 + + + + + + + + DDANAT:0000403 + obsolete aggregate cell + true + + + + + + + + Obsolete. Use PO:0000373 from Plant Ontology instead. Cell containing mucilages or gums or similar carbohydrate material characterized by the property of swelling in water. + cell + replaced_by: PO:0000373 + obsolete mucilage cell + true + + + + + Obsolete. Use PO:0000373 from Plant Ontology instead. Cell containing mucilages or gums or similar carbohydrate material characterized by the property of swelling in water. + ISBN:0471245208 + + + + + + + + + cell + anterior cell + + + + + + + + Obsolete. Use PO:0000351 from Plant Ontology instead. An epidermal cell that divides to produce the guard cells. + cell + replaced_by: PO:0000351 + obsolete guard mother cell + true + + + + + Obsolete. Use PO:0000351 from Plant Ontology instead. An epidermal cell that divides to produce the guard cells. + ISBN:0471245208 + + + + + + + + DDANAT:0000002 + obsolete vegetative cell (sensu Mycetozoa) + true + + + + + + + + Obsolete. Use PO:0000400 from Plant Ontology instead. A cambial cell on the phloem side of the cambial zone that is the source of one or more cells arising by periclinal divisions and differentiating into phloem elements with or without additional divisions in various planes. + phloem mother cell + cell + replaced_by: PO:0000400 + obsolete phloem initial + true + + + + + Obsolete. Use PO:0000400 from Plant Ontology instead. A cambial cell on the phloem side of the cambial zone that is the source of one or more cells arising by periclinal divisions and differentiating into phloem elements with or without additional divisions in various planes. + ISBN:0471245208 + + + + + + + + DDANAT:0000404 + obsolete anterior like cell + true + + + + + + + + Obsolete. Use PO:0004011 from Plant Ontology instead. A cell constituting an active locus of meristematic activity in a tissue composed of somewhat older, differentiating cells. + cell + replaced_by: PO:0004011 + obsolete meristemoid + true + + + + + Obsolete. Use PO:0004011 from Plant Ontology instead. A cell constituting an active locus of meristematic activity in a tissue composed of somewhat older, differentiating cells. + ISBN:0471245208 + + + + + + + + DDANAT:0000405 + obsolete prespore cell + true + + + + + + + + Obsolete. Consult Plant Ontology instead. The cell in the phloem tissue concerned with mainly longitudinal conduction of food materials. Classified into sieve cell and sieve tube member. + cell + obsolete sieve element + true + + + + + Obsolete. Consult Plant Ontology instead. The cell in the phloem tissue concerned with mainly longitudinal conduction of food materials. Classified into sieve cell and sieve tube member. + ISBN:0471245208 + + + + + + + + DDANAT:0000406 + obsolete prestalk cell + true + + + + + + + + Obsolete. Use PO:0000284 from Plant Ontology instead. An epidermal cell associated with a stoma and at least morphologically distinguishable from the epidermal cells composing the groundmass of the tissue. + cell + replaced_by: PO:0000284 + obsolete subsidiary cell + true + + + + + Obsolete. Use PO:0000284 from Plant Ontology instead. An epidermal cell associated with a stoma and at least morphologically distinguishable from the epidermal cells composing the groundmass of the tissue. + ISBN:047124520 + + + + + + + + DDANAT:0000408 + obsolete prestalk A cell + true + + + + + + + + OBSOLETE, use term from Plant Ontology. A cell localized in the vascular cambium or phellogen. Its periclinal division can contribute cells either to the outside or to the inside of the axis; in vascular cambium, classified into fusiform initials (source of axial cells of xylem and phloem) and ray initials (source of the ray cells). + cell + replaced_by PO:0000295 + obsolete cambial initial + true + + + + + OBSOLETE, use term from Plant Ontology. A cell localized in the vascular cambium or phellogen. Its periclinal division can contribute cells either to the outside or to the inside of the axis; in vascular cambium, classified into fusiform initials (source of axial cells of xylem and phloem) and ray initials (source of the ray cells). + ISBN:0471245208 + + + + + + + + DDANAT:0000410 + obsolete prestalk AB cell + true + + + + + + + + DDANAT:0000409 + obsolete prestalk B cell + true + + + + + + + + Obsolete. Use PO:0000077 from Plant Ontology instead. Cell variable in form and size, being more or less thick, often lignified, secondary walls. Belongs to the category of subcells and may or may not be devoid of protoplast at maturity. + cell + replaced_by: PO:0000077 + obsolete sclerenchyma cell + true + + + + + Obsolete. Use PO:0000077 from Plant Ontology instead. Cell variable in form and size, being more or less thick, often lignified, secondary walls. Belongs to the category of subcells and may or may not be devoid of protoplast at maturity. + ISBN:0471245208 + + + + + + + + OBSOLETE: Initial population of prestalk cells that activate the ecmA promoter at the mound stage and that presumably further differentiate into pstA and pstO cells. + DDANAT:0000406 + cell + This cell type does not exist in Dictyostelium. it has been long deleted in their anatomy ontology. + obsolete prestalk I cell + true + + + + + OBSOLETE: Initial population of prestalk cells that activate the ecmA promoter at the mound stage and that presumably further differentiate into pstA and pstO cells. + DictyBase:DDB + + + + + + + + Obsolete. Use PO:0020090 from Plant Ontology instead. OBSOLETED, use term from Plant Ontology. A cell containing the two polar nuclei which, after double fertilization, will develop into the endosperm. + cell + replaced_by: PO:0020090 + obsolete central cell + true + + + + + Obsolete. Use PO:0020090 from Plant Ontology instead. OBSOLETED, use term from Plant Ontology. A cell containing the two polar nuclei which, after double fertilization, will develop into the endosperm. + TAIR:lr + + + + + + + + DDANAT:0000407 + obsolete prestalk 0 cell + true + + + + + + + + Obsolete. Use PO:0020097 from Plant Ontology instead. The cell that will give rise to the generative nuclei which will participate in fertilization. + cell + replaced_by: PO:0020097 + obsolete generative cell + true + + + + + Obsolete. Use PO:0020097 from Plant Ontology instead. The cell that will give rise to the generative nuclei which will participate in fertilization. + TAIR:lr + + + + + + + + DDANAT:0000411 + obsolete pstAB/ALC + true + + + + + + + + Obsolete. Use PO:0000282 from Plant Ontology instead. An outgrowth from the epidermis. Trichomes vary in size and complexity and include hairs, scales, and other structures and may be glandular. In Arabidopsis, patterning of trichome development is not random but does not appear to be lineage-based like stomata. + cell + replaced_by: PO:0000282 + obsolete trichome + true + + + + + Obsolete. Use PO:0000282 from Plant Ontology instead. An outgrowth from the epidermis. Trichomes vary in size and complexity and include hairs, scales, and other structures and may be glandular. In Arabidopsis, patterning of trichome development is not random but does not appear to be lineage-based like stomata. + ISBN:0471245208 + PMID:10938806 + + + + + + + + DDANAT:0000412 + obsolete pstO/ALC + true + + + + + + + + Obsolete. Use PO:0000071 from Plant Ontology instead. A specialized parenchyma cell associated with a sieve-tube member in angiosperm phloem and arising from the same mother cell as the sieve-tube member. + cell + replaced_by: PO:0000071 + obsolete companion cell + true + + + + + Obsolete. Use PO:0000071 from Plant Ontology instead. A specialized parenchyma cell associated with a sieve-tube member in angiosperm phloem and arising from the same mother cell as the sieve-tube member. + ISBN:0879015322 + + + + + + + + DDANAT:0000413 + obsolete stalk cell + true + + + + + + + + + A cell of a filament of a fungal mycelium. + cell + hyphal cell + + + + + A cell of a filament of a fungal mycelium. + ISBN:08199377X + + + + + + + + + + + + + + + + + + + + cell + eye photoreceptor cell + + + + + + + + Obsolete. Use PO:0000191 from Plant Ontology instead. A cell in the micropylar end of the embryo sac associated with the egg in the egg apparatus of angiosperms. Plays a vital role in fertilization. + cell + replaced_by: PO:0000191 + obsolete synergid + true + + + + + Obsolete. Use PO:0000191 from Plant Ontology instead. A cell in the micropylar end of the embryo sac associated with the egg in the egg apparatus of angiosperms. Plays a vital role in fertilization. + ISBN:047125208 + + + + + + + + DDANAT:0000402 + obsolete chemotactic amoeboid cell (sensu Mycetozoa) + true + + + + + + + + Obsolete. Use PO:0000274 from Plant Ontology instead. A fiber of the xylem tissue, Two types are recognized in the secondary xylem: fiber tracheids and libriform fibers. + cell + replaced_by: PO:0000274 + obsolete xylem fiber cell + true + + + + + Obsolete. Use PO:0000274 from Plant Ontology instead. A fiber of the xylem tissue, Two types are recognized in the secondary xylem: fiber tracheids and libriform fibers. + ISBN:0471245208 + + + + + + + + DDANAT:0000414 + obsolete spore (sensu Mycetozoa) + true + + + + + + + + Obsolete. Use PO:0000293 from Plant Ontology instead. One of a pair of cells flanking the stomatal pore and causing the opening and closing of the pore by changes in turgor. + stomatal guard cell + cell + replaced_by: PO:0000293 + obsolete guard cell + true + + + + + Obsolete. Use PO:0000293 from Plant Ontology instead. One of a pair of cells flanking the stomatal pore and causing the opening and closing of the pore by changes in turgor. + ISBN:0471245208 + + + + + + + + + A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism. + cell + structural cell + + + + + A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism. + TAIR:sr + + + + + + + + Obsolete. Consult Plant Ontology instead. A type of sieve element that has relatively undifferentiated sieve areas (with narrow pores), rather uniform in structure on all walls; that is, there are no sieve plates. Typical of gymnosperms and lower vascular plants. + cell + obsolete sieve cell + true + + + + + Obsolete. Consult Plant Ontology instead. A type of sieve element that has relatively undifferentiated sieve areas (with narrow pores), rather uniform in structure on all walls; that is, there are no sieve plates. Typical of gymnosperms and lower vascular plants. + ISBN:0471245208 + + + + + + + + + + + + + + + + + + + A peptide hormone secreting cell that produces growth hormone, somatotropin. + CL:0000471 + growth hormone secreting cell + somatotrophin secreting cell + cell + somatotropin secreting cell + + + + + A peptide hormone secreting cell that produces growth hormone, somatotropin. + GOC:tfm + SANBI:mhl + + + + + + + + Obsolete. Use PO:0020099 from Plant Ontology instead. Cell type formed after the first mitotic division of the microgametophye, The nucleus of this cell migrates to the tip of the pollen tube after germination and disintegrates when the pollen tube penetrates the nucellus. + cell + replaced_by: PO:0020099 + obsolete vegetative cell + true + + + + + Obsolete. Use PO:0020099 from Plant Ontology instead. Cell type formed after the first mitotic division of the microgametophye, The nucleus of this cell migrates to the tip of the pollen tube after germination and disintegrates when the pollen tube penetrates the nucellus. + ISBN:0140514031 + TAIR:lr + + + + + + + + Obsolete. Use PO:0000115 from Plant Ontology instead. A cell that surrounds a trichome and provides support for the trichome. + cell + replaced_by: PO:0000115 + obsolete socket cell + true + + + + + Obsolete. Use PO:0000115 from Plant Ontology instead. A cell that surrounds a trichome and provides support for the trichome. + PMID:10938806 + + + + + + + + Obsolete. Use PO:0000273 from Plant Ontology instead. A cell composing the xylem. + cell + replaced_by: PO:0000273 + obsolete xylem element + true + + + + + Obsolete. Use PO:0000273 from Plant Ontology instead. A cell composing the xylem. + ISBN:0471245208 + + + + + + + + OBSOLETED. Commonly used for a cell in root epidermis that gives rise to a root hair. The daughter cell produced by the asymmetric division of a root epidermal cell that gives rise to a root hair. + cell + Obsoleted. Use trichoblast from the plant ontology (PO:0000262). + obsolete trichoblast + true + + + + + OBSOLETED. Commonly used for a cell in root epidermis that gives rise to a root hair. The daughter cell produced by the asymmetric division of a root epidermal cell that gives rise to a root hair. + ISBN:0471245208 + + + + + + + + + + + + + + + + + + + + + + + + A mature sexual reproductive cell having a single set of unpaired chromosomes. + CALOHA:TS-0395 + FBbt:00005412 + FMA:18649 + haploid nucleated cell + cell + haploid germ cell + gamete + + + + + + true + + + + + A mature sexual reproductive cell having a single set of unpaired chromosomes. + GOC:tfm + ISBN:0721662544 + + + + + + + + + FBbt:00000092 + cell + pole cell + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Not a differentiation state per se; consider using 'B cell ; CL:0000236' or one of its children instead. + obsolete IgM B cell + true + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Not a differentiation state per se, and IgG isotypes vary by species; consider using 'B cell ; CL:0000236' or one of its children instead. + obsolete IgG B cell + true + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Not a differentiation state per se, and IgA isotypes vary by species. Consider using 'B cell ; CL:0000236' or one of its children instead. + obsolete IgA B cell + true + + + + + + + + OBSOLETE (was not defined before being made obsolete). + cell + Not a differentiation state per se; consider using 'B cell ; CL:0000236' or one of its children instead. + obsolete IgE B cell + true + + + + + + + + + FBbt:00004193 + lens cell + cell + crystallin accumulating cell + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell found in the trachea. + CL:1000474 + FMA:74793 + tracheocyte + cell + This class is for the vertebrate tracheal structure. For the analagous insect cell type, see 'respiratory tube epithelial cell' + tracheal epithelial cell + + + + + + true + + + + + An epithelial cell found in the trachea. + GOC:tfm + + + + + + + + + cell + metal ion accumulating cell + + + + + + + + + cuprophilic cell + cell + copper accumulating cell + + + + + + + + + cell + iron accumulating cell + + + + + + + + + cell + keratin accumulating cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell. + CL:0002185 + BTO:0000667 + CALOHA:TS-0500 + FMA:62879 + keratinized cell of epidermis + malpighian cell + cell + Keratinocytes are reportedly CDw210a-negative, CDw210b-positive, CD281-positive, CD282-positive, CD285-positive, IL22Ra1-positive, Human keratinocytes are reportedly capable of secreting BD-2, BD-3, hCAP-18, CXCL1, CXCL5, CXCL8, elafin, MMP-3, NGAL, PDGF-A, S100A7, S100A8, and S100A9. Transcription factors: STAT3-positive. + keratinocyte + + + + + + true + + + + + + true + + + + + An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell. + GOC:dsd + MESH:A11.436.397 + MESH:D015603 + PMID:15582983 + PMID:15749908 + PMID:19727116 + http://en.wikipedia.org/wiki/Keratinocyte + + + + + + + + + Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid. + BTO:0003687 + FMA:62511 + serous cell + cell + serous secreting cell + + + + + Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid. + GOC:tfm + ISBN:0517223651 + ISBN:0721662544 + + + + + + + + + cell + milk secreting cell + + + + + + + + + A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea. + cell + tears secreting cell + + + + + A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea. + MESH:A12.200.882 + + + + + + + + Obsolete. Use PO:0000082 from Plant Ontology instead. A meristemic ray cell in the vascular cambium that gives rise to ray cells of the secondary xylem and secondary phloem. + cell + replaced_by: PO:0000082 + obsolete ray initial + true + + + + + Obsolete. Use PO:0000082 from Plant Ontology instead. A meristemic ray cell in the vascular cambium that gives rise to ray cells of the secondary xylem and secondary phloem. + ISBN:0471245208 + + + + + + + + + + + + + + + + + + + + A cell secreting sebun, an oily substance secreted by sebaceous glands, composed of keratin, fat, and cellular debris. + sebocyte + cell + sebum secreting cell + + + + + + true + + + + + A cell secreting sebun, an oily substance secreted by sebaceous glands, composed of keratin, fat, and cellular debris. + MESH:A12.200.702 + + + + + + + + + + A cell secreting sweat, the fluid excreted by the sweat glands of mammals. It consists of water containing sodium chloride, phosphate, urea, ammonia, and other waste products. + cell + sweat secreting cell + + + + + A cell secreting sweat, the fluid excreted by the sweat glands of mammals. It consists of water containing sodium chloride, phosphate, urea, ammonia, and other waste products. + MESH:A12.200.849 + + + + + + + + + + + + + + + + + + + + + + + + + + BTO:0003689 + mucous cell + cell + mucus secreting cell + + + + + + + + Obsolete. Use PO:0000431 from Plant Ontology instead. A diploid (2n) cell that undergoes meiosis and produces four haploid (1n) megaspores; also called megaspore mother cell. + archesporial cell + megaspore mother cell + cell + replaced_by: PO:0000431 + obsolete megasporocyte + true + + + + + Obsolete. Use PO:0000431 from Plant Ontology instead. A diploid (2n) cell that undergoes meiosis and produces four haploid (1n) megaspores; also called megaspore mother cell. + ISBN:0471245208 + + + + + + + + + cell + seminal fluid secreting cell + + + + + + + + + + + + + + + An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates. + BTO:0000395 + CALOHA:TS-2168 + FMA:62499 + alveolar epithelial cell + pneumonocyte + cell + pneumocyte + + + + + An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates. + GOC:tfm + PMID:20054144 + + + + + + + + + cell + lysozyme secreting cell + + + + + + + + + + + + + + + cell + metanephric mesenchyme stem cell + + + + + + + + + A cell that is specialised to accumulate a particular substance(s). + cell + + stuff accumulating cell + + + + + A cell that is specialised to accumulate a particular substance(s). + FB:ma + + + + + + + + + cell + glycogen accumulating cell + + + + + + + + + + + + + + + + + + + + cell + extracellular matrix secreting cell + + + + + + + + + cell + myelin accumulating cell + + + + + + + + + + + + + + + + + + + cell + oxygen accumulating cell + + + + + + + + Obsolete. Use PO:0000075 from Plant Ontology instead. An elongated living cell with unevenly thickened nonlignified primary walls. + cell + replaced_by: PO:0000075 + obsolete collenchymal cell + true + + + + + Obsolete. Use PO:0000075 from Plant Ontology instead. An elongated living cell with unevenly thickened nonlignified primary walls. + ISBN:0471245208 + + + + + + + + Obsolete. Use PO:0000301 from Plant Ontology instead. A tracheary element of the xylem that has no perforations, as contrasted with a vessel member. May occur in primary and in secondary xylem. May have any kind of secondary wall thickening found in tracheary elements. + cell + replaced_by: PO:0000301 + obsolete tracheid + true + + + + + Obsolete. Use PO:0000301 from Plant Ontology instead. A tracheary element of the xylem that has no perforations, as contrasted with a vessel member. May occur in primary and in secondary xylem. May have any kind of secondary wall thickening found in tracheary elements. + ISBN:0471245208 + + + + + + + + OBSOLETE, use term from Plant Ontology. A cell formed after asymmetric division of root epidermal cell that does not give rise to a root hair. + cell + non-hair cell + replaced_by: PO:0020090 + obsolete atrichoblast + true + + + + + OBSOLETE, use term from Plant Ontology. A cell formed after asymmetric division of root epidermal cell that does not give rise to a root hair. + ISBN:0387987819 + + + + + + + + + + + + + + + + + A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body. + FMA:86667 + cell + migratory neural crest cell + + + + + A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body. + MESH:A16.254.600 + + + + + + + + + BTO:0002307 + FAO:0000032 + cell + yeast-form + vegetative cell (sensu Fungi) + + + + + + + + + A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors. + cell + mesenchyme condensation cell + + + + + A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors. + GOC:tfm + PMID:5025404 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A cell found within the adrenal medulla that secrete biogenic amine hormones upon stimulation. + CL:1000422 + FMA:69262 + medullary chromaffin cell of adrenal gland + cell + adrenal medulla chromaffin cell + + + + + + true + + + + + + true + + + + + A cell found within the adrenal medulla that secrete biogenic amine hormones upon stimulation. + GOC:tfm + http://www.britannica.com/EBchecked/topic/6405/adrenal-gland + + + + + medullary chromaffin cell of adrenal gland + FMA:69262 + + + + + + + + + An embryonic cell that develops into a nerve cell or neuron. + cell + neuroblast (sensu Vertebrata) + + + + + An embryonic cell that develops into a nerve cell or neuron. + FMA:70563 + + + + + + + + + neuroblast + cell + neuroblast (sensu Nematoda and Protostomia) + + + + + + + + + + An early neural cell developing from the early ependymal cell of the neural tube. + FMA:70564 + spongioblast + cell + glioblast (sensu Vertebrata) + + + + + An early neural cell developing from the early ependymal cell of the neural tube. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + cell + glioblast (sensu Nematoda and Protostomia) + + + + + + + + + cell + pigment cell (sensu Nematoda and Protostomia) + + + + + + + + + Any animal cell containing pigment granules. + cell + pigment cell (sensu Vertebrata) + + + + + Any animal cell containing pigment granules. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + A pigment cell that is capable of detecting light stimulus that is involved in visual perception. + FMA:63846 + cell + visual pigment cell (sensu Vertebrata) + + + + + + true + + + + + A pigment cell that is capable of detecting light stimulus that is involved in visual perception. + GOC:tfm + + + + + + + + cell + obsolete non-visual cell (sensu Vertebrata) + true + + + + + + + + + + + + + + + + + + + + + A mesenchymal cell that is part of a small mass of condensed mesenchyme in the enamel organ; it differentiates into the dentin and dental pulp. + cell + Merge with odontoblast? + dental papilla cell + + + + + A mesenchymal cell that is part of a small mass of condensed mesenchyme in the enamel organ; it differentiates into the dentin and dental pulp. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + A specialized mesenchymal cell that resides in the dermal papilla located at the bottom of hair follicles. This cell plays a pivotal roles in hair formation, growth, and cycling. + cell + Are these really all stem cells? + hair follicle dermal papilla cell + + + + + + true + + + + + A specialized mesenchymal cell that resides in the dermal papilla located at the bottom of hair follicles. This cell plays a pivotal roles in hair formation, growth, and cycling. + GOC:tfm + PMID:9893172 + + + + + + + + + + + + + + + + + + + + + + + + + A cell of the sclera of the eye. + cell + scleral cell + + + + + A cell of the sclera of the eye. + GOC:add + + + + + + + + + + + + + + + + + + + + + + + + + A cell of the choroid of the eye. + cell + choroidal cell of the eye + + + + + A cell of the choroid of the eye. + GOC:add + + + + + + + + + + + + + + + + + + + + cell + extraembryonic cell + + + + + + + + + + + + + + + + + + + cell + amnioserosal cell + + + + + + + + + + + + + + + + + + + + A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface. + FMA:83028 + trophoblastic cell + cell + trophoblast cell + + + + + + true + + + + + A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface. + GOC:tfm + MESH:A11.936 + + + + + + + + + A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation. + cell + epiblast cell + + + + + A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation. + GOC:tfm + ISBN:0618947256 + + + + + + + + + An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). + BTO:0001473 + FMA:72551 + blastomere + cell + blastoderm cell + + + + + An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). + MESH:A11.104 + + + + + + + + + ncithesaurus:Blastemal_Cell + blastema cell + cell + blastemal cell + + + + + + + + + + + + + + + + + + + + A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell. + FMA:86767 + cell + Multi-potency demonstrated ex vivo. At the time of writing, it is unclear whether the endogenous population differentiates into multiple cell types in vivo. + multi-potent skeletal muscle stem cell + + + + + + true + + + + + A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell. + PMID:18282570 + + + + + + + + + cell + hair matrix stem cell + + + + + + + + + cell + stratified epithelial stem cell + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of a sphincter. A sphincter is a typically circular muscle that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning. + cell + sphincter associated smooth muscle cell + + + + + + true + + + + + A smooth muscle cell that is part of a sphincter. A sphincter is a typically circular muscle that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning. + GOC:cjm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell assocatiated with the vasculature. + VSMC + vascular smooth muscle cell + cell + vascular associated smooth muscle cell + + + + + + true + + + + + A smooth muscle cell assocatiated with the vasculature. + GOC:dsd + GOC:tfm + + + + + + + + + + + + + + + A cell of the early embryo at the developmental stage in which the blastomeres, resulting from repeated mitotic divisions of the fertilized ovum (zygote), form a compact cell mass. + cell + morula cell + + + + + A cell of the early embryo at the developmental stage in which the blastomeres, resulting from repeated mitotic divisions of the fertilized ovum (zygote), form a compact cell mass. + MESH:A16.254.270.550 + + + + + + + + + + + + + + + A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. + cell + gastrula cell + + + + + A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. + MESH:A16.254.412 + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the integument (the outer layer of an organism). + CL:1000396 + BTO:0001470 + CALOHA:TS-0283 + FMA:62411 + cell of epidermis + epithelial cell of skin + cell + epidermal cell + + + + + An epithelial cell of the integument (the outer layer of an organism). + Flybase:dsj + MA:ma + + + + + cell of epidermis + FMA:62411 + + + + + epithelial cell of skin + FMA:62411 + + + + + + + + Obsolete. Use PO:0000081 from Plant Ontology instead. OBSOLETE, use term from the Plant Ontology. A secondary vascular cell that develops from the fusiform cambial initials and oriented with their longest diameter parallel with the main axis of stem or root. These cells make up the axial system, also known as vertical or longitudinal system. + cell + replaced_by: PO:0000081 + obsolete axial cell + true + + + + + Obsolete. Use PO:0000081 from Plant Ontology instead. OBSOLETE, use term from the Plant Ontology. A secondary vascular cell that develops from the fusiform cambial initials and oriented with their longest diameter parallel with the main axis of stem or root. These cells make up the axial system, also known as vertical or longitudinal system. + ISBN:0471245208 + + + + + + + + Obsolete. Consult Plant Ontology. A cell that develops from the ray initial and composes all rays (panels of tissue variable in height and width, formed by the ray initials in the vascular cambium and extending radially in the secondary xylem and secondary phloem) in the secondary vascular tissues. + cell + obsolete ray cell + true + + + + + Obsolete. Consult Plant Ontology. A cell that develops from the ray initial and composes all rays (panels of tissue variable in height and width, formed by the ray initials in the vascular cambium and extending radially in the secondary xylem and secondary phloem) in the secondary vascular tissues. + ISBN:0471245208 + + + + + + + + + Diploid cell produced by the fusion of sperm cell nucleus and egg cell. + zygote + BTO:0000854 + EHDAA2:0004546 + FMA:72395 + cell + animal zygote + + + + + Diploid cell produced by the fusion of sperm cell nucleus and egg cell. + ISBN:0471245208 + + + + + + + + Obsolete. Use PO:0000084 from Plant Ontology instead. Male gamete, part of male germ unit. + cell + gametophyte sperm cell + male gametophyte sperm cell + pollen germ cell + replaced_by: PO:0000084 + obsolete sperm cell (sensu Viridiplantae) + true + + + + + Obsolete. Use PO:0000084 from Plant Ontology instead. Male gamete, part of male germ unit. + ISBN:0471245208 + + + + + + + + + cell + glial cell (sensu Nematoda) + sheath cell (sensu Nematoda) + + + + + + + + Obsolete. Use PO:0000352 from Plant Ontology instead. Cell containing glucosinolates ('mustard oil glucosides') and myrosinases, enzymes hydrolyzing the glucosinolates. Occurs in eleven dicotyledon families, the two largest of which are the Brassicaceae and Euphorbiaceae. + cell + replaced_by: PO:0000352 + obsolete myrosin cell + true + + + + + Obsolete. Use PO:0000352 from Plant Ontology instead. Cell containing glucosinolates ('mustard oil glucosides') and myrosinases, enzymes hydrolyzing the glucosinolates. Occurs in eleven dicotyledon families, the two largest of which are the Brassicaceae and Euphorbiaceae. + ISBN:0471245208 + + + + + + + + Obsolete. Use PO:0000078 from Plant Ontology instead. Parenchyma cell with the wall ingrowth (or invaginations) that increase the surface of the plasmalemma. Appears to be specialized for short-distance transfer of solutes. + cell + intermediary cell + replaced_by: PO:0000078 + obsolete transfer cell + true + + + + + Obsolete. Use PO:0000078 from Plant Ontology instead. Parenchyma cell with the wall ingrowth (or invaginations) that increase the surface of the plasmalemma. Appears to be specialized for short-distance transfer of solutes. + ISBN:0471245208 + + + + + + + + + The cell protoplasm after removal of the cell wall. + cell + protoplast + + + + + The cell protoplasm after removal of the cell wall. + ISBN:08199377X + + + + + + + + + An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization that forms a socket around the base of a cuticular specialization produced by a trichogen cell. + socket cell + FBbt:00005171 + cell + tormogen cell + + + + + An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization that forms a socket around the base of a cuticular specialization produced by a trichogen cell. + ISBN:978-0801481253 + + + + + socket cell + ISBN:978-0801481253 + + + + + + + + + FBbt:00001789 + cell + histoblast + + + + + + + + + An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization, often in the form of a hair, bristle, peg or scale. The base of this specialization is often surrounded by a socket produced by a closely associated tormogen cell. + hair cell + BTO:0004744 + FBbt:00005169 + cell + trichogen cell + + + + + An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization, often in the form of a hair, bristle, peg or scale. The base of this specialization is often surrounded by a socket produced by a closely associated tormogen cell. + ISBN:978-0801481253 + + + + + + + + CL:0007010 + BTO:0002051 + cell + obsolete osteoprogenitor cell + true + + + + + + + + + cell + humidity receptor cell + + + + + + + + + cell + tracheoblast + + + + + + + + + cell + support cell (sensu Nematoda and Protostomia) + + + + + + + + + cell + sensory processing neuron + + + + + + + + + The support cell that makes the thecogen dendritic cap - a cuticle-like matrix around the tip of the eo-dendrite and which encloses the soma of the eo-neuron. + fly sheath cell + cell + thecogen cell + + + + + The support cell that makes the thecogen dendritic cap - a cuticle-like matrix around the tip of the eo-dendrite and which encloses the soma of the eo-neuron. + Fbbt:00005173 + + + + + + + + + + + + + + + + + + + + FBbt:00005130 + cell + neurosecretory neuron + + + + + + + + + FBbt:00005219 + cell + scolopale cell + + + + + + + + + + + + + + + cell + nephrogenic mesenchyme stem cell + + + + + + + + + cell + ligament cell + + + + + + + + + FBbt:00005062 + cell + prohemocyte (sensu Nematoda and Protostomia) + + + + + + + + + cell + attachment cell + + + + + + + + + + + + + + + + + + + + + FBbt:00005063 + cell + hemocyte (sensu Nematoda and Protostomia) + + + + + + + + + + + PMID:18025161 + + + + + + + + + + + + + + + + + + + + + An elongated fibrocyte that is part of a tendon. The cytoplasm is stretched between the collagen fibres of the tendon. They have a central cell nucleus with a prominent nucleolus. Tendon cells have a well-developed rough endoplasmic reticulum and they are responsible for synthesis and turnover of tendon fibres and ground substance. + muscle attachment cell + cell + tenocyte + tendon cell + + + + + + true + + + + + An elongated fibrocyte that is part of a tendon. The cytoplasm is stretched between the collagen fibres of the tendon. They have a central cell nucleus with a prominent nucleolus. Tendon cells have a well-developed rough endoplasmic reticulum and they are responsible for synthesis and turnover of tendon fibres and ground substance. + GOC:NV + GOC:tfm + PMID:957445 + + + + + + + + + + cell + socket cell (sensu Nematoda) + + + + + + + + + cell + blood cell (sensu Nematoda and Protostomia) + + + + + + + + + + + + + + + An insect immune cell that develops from plasmatocyte. + FBbt:00001688 + cell + podocyte (sensu Diptera) + + + + + An insect immune cell that develops from plasmatocyte. + PMID:12930778 + + + + + + + + + FMA:63847 + cell + crystal cell + + + + + + + + + A cell whose function is determined by its response to an electric signal. + cell + electrically responsive cell + + + + + A cell whose function is determined by its response to an electric signal. + FB:ma + + + + + + + + + FBbt:00001685 + cell + plasmatocyte + + + + + + + + + FBbt:00001689 + cell + procrystal cell + + + + + + + + + FBbt:00001687 + cell + lamellocyte + + + + + + + + + + + + + + + + + + + + cell + ganglion interneuron + + + + + + true + + + + + + + + + FBbt:00001691 + cell + polygonal cell + + + + + + + + Obsolete. Consult Plant Ontology instead. OBSOLETED, not defined prior to obsoletion. + cell + obsolete phloem element + true + + + + + Obsolete. Consult Plant Ontology instead. OBSOLETED, not defined prior to obsoletion. + GOC:tfm + + + + + + + + Obsolete. Use PO:0000332 from Plant Ontology instead. An epidermal cell with a characteristic convoluted anticlinal cell wall that gives a jigsaw like appearance to the lamina. + cell + replaced_by: PO:0000332 + obsolete pavement cell + true + + + + + Obsolete. Use PO:0000332 from Plant Ontology instead. An epidermal cell with a characteristic convoluted anticlinal cell wall that gives a jigsaw like appearance to the lamina. + ISBN:087694289 + + + + + + + + + FBbt:00001686 + cell + macrophage (sensu Diptera) + + + + + + + + + + + + + + + + + + + + + cell + CNS interneuron + + + + + + true + + + + + + + + + A cell that initiates an electrical signal and passes that signal to another cell. + cell + electrically signaling cell + + + + + A cell that initiates an electrical signal and passes that signal to another cell. + FB:ma + + + + + + + + + FBbt:00005148 + cell + neuroepidermoblast + + + + + + + + + cell + CNS short range interneuron + + + + + + + + + FBbt:00005221 + cell + scolopidial ligament cell + + + + + + + + + + + + + + + + + + + + + + + + + BTO:0001277 + CALOHA:TS-0949 + cell + male gamete + + + + + + true + + + + + + true + + + + + + + + + FBbt:00005219 + cell + scolopidial sheath cell + + + + + + + + + cell + CNS long range interneuron + + + + + + + + + + + An epithelial cell of the hypodermis of flatworms. + WBbt:0007846 + cell + flatworm hypodermal cell + + + + + An epithelial cell of the hypodermis of flatworms. + GOC:tfm + http://www.wormatlas.org/hermaphrodite/hypodermis/mainframe.htm + + + + + + + + + A cell whose nucleus, or nuclei, each contain more than two haploid genomes. + cell + polyploid cell + + + + + A cell whose nucleus, or nuclei, each contain more than two haploid genomes. + FB:ma + + + + + + + + + + + + + + + + + + + A cell whose nucleus contains a single haploid genome. + cell + haploid cell + + + + + A cell whose nucleus contains a single haploid genome. + FB:ma + GOC:tfm + + + + + + + + OBSOLETE: A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei. + CL:0000000 + CL:0000003 + CL:0000255 + CL:0001034 + cell + This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell with chromosomes can be classified by its ploidy. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), eukaryotic cell (CL:0000255) or cell in vitro (CL:0001034) as appropriate. + obsolete cell by ploidy + true + + + + + OBSOLETE: A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei. + FB:ma + GOC:tfm + + + + + + + + + A cell whose nucleus has two haploid genomes. + FMA:72300 + cell + diploid cell + + + + + A cell whose nucleus has two haploid genomes. + FB:ma + + + + + + + + + cell + polytene cell + + + + + + + + + cell + endopolyploid cell + + + + + + + + + + An epithelial cell found in C. elegans that firmly hold the outer body wall and the lips to the inner cylinder of the pharynx in a manner that keeps these organs from breaking apart, while still giving each organ freedom of movement during feeding. + WBbt:0005793 + cell + arcade cell + + + + + An epithelial cell found in C. elegans that firmly hold the outer body wall and the lips to the inner cylinder of the pharynx in a manner that keeps these organs from breaking apart, while still giving each organ freedom of movement during feeding. + GOC:tfm + http://www.wormatlas.org/ver1/handbook/hypodermis/hypsupportother.htm#arcadecells + + + + + + + + + An epithelial fate stem cell found in flatworms. + BTO:0003039 + cell + seam cell + + + + + An epithelial fate stem cell found in flatworms. + GOC:tfm + http://www.wormatlas.org/hermaphrodite/seam%20cells/mainframe.htm + + + + + + + + + + + cell + syncytial epithelial cell + + + + + + + + + + A free floating cell, including amebocytes and eleocytes, in the coelom of certain animals, especially annelids. + BTO:0002856 + WBbt:0005751 + cell + coelomocyte + + + + + A free floating cell, including amebocytes and eleocytes, in the coelom of certain animals, especially annelids. + GOC:tfm + ISBN:0721662544 + + + + + + + + + A cell whose primary function is to cause growth by stimulating cell division in its immediate cellular environment. + cell + mitogenic signaling cell + + + + + A cell whose primary function is to cause growth by stimulating cell division in its immediate cellular environment. + FB:ma + + + + + + + + + cell + tip cell + + + + + + + + + A cell involved in the elimination of metabolic and foreign toxins, and in maintaining the ionic, acid-base and water balance of biological fluids. + WBbt:0005812 + cell + excretory cell + + + + + A cell involved in the elimination of metabolic and foreign toxins, and in maintaining the ionic, acid-base and water balance of biological fluids. + GOC:tfm + PMID:19783135 + + + + + + + + + Forms the terminal part of the cuticle-lined excretory duct of C. elegans. + cell + pore cell + + + + + Forms the terminal part of the cuticle-lined excretory duct of C. elegans. + JB:jb + + + + + + + + + cell + scaffold cell + + + + + + + + + A scaffolding cell type found in C. elegans, this cell plays a supportive role to the muscle arms. May also have an endocrine role. + cell + GLR cell + + + + + A scaffolding cell type found in C. elegans, this cell plays a supportive role to the muscle arms. May also have an endocrine role. + GOC:tfm + http://wormatlas.psc.edu/hermaphrodite/muscleGLR/mainframe.htm + + + + + + + + + + cell + yolk cell + + + + + + + + + cell + imaginal disc cell + + + + + + + + + + + + + + + A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. + cell + xanthophore + xanthophore cell + + + + + A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. + SANBI:mhl + + + + + + + + + + + + + + + A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. + cell + guanophore + iridophore + + + + + A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. + SANBI:mhl + + + + + + + + + Large, stellate fibroblast found along the network of collagen fibers of the reticulum of the spleen; synthesize the matrix components of the reticulum. + FMA:62877 + reticulum cell + cell + reticular cell + + + + + Large, stellate fibroblast found along the network of collagen fibers of the reticulum of the spleen; synthesize the matrix components of the reticulum. + GOC:tfm + ISBN:0517223651 + http://en.wikipedia.org/wiki/Reticular_cell + + + + + + + + Obsolete. Use PO:0000244 from Plant Ontology instead. In monosporic and bisporic megasporogenesis: the megaspore(s) that will undergo megagametogenesis. + cell + replaced_by: PO:0000244 + obsolete functional megaspore + true + + + + + Obsolete. Use PO:0000244 from Plant Ontology instead. In monosporic and bisporic megasporogenesis: the megaspore(s) that will undergo megagametogenesis. + TAIR:lr + + + + + + + + + A secretory cell that discharges its product without loss of cytoplasm. + cell + eccrine cell + + + + + A secretory cell that discharges its product without loss of cytoplasm. + ISBN:0198547684 + + + + + + + + + cell + alkali secreting cell + + + + + + + + + + + + + + + cell + vaginal lubricant secreting cell + + + + + + + + + + A rounded cell that is usually situated next to sinusoids; secretes follicular stimulating hormone (FSH) and luteinizing hormone (LH). + BTO:0002482 + FMA:83100 + delta basophil + follicle stimulating hormone secreting cell + gonadotrope + gonadotrope cell + gonadotroph + gonadotropic cell + pituitary delta cell + cell + gonadtroph + + + + + A rounded cell that is usually situated next to sinusoids; secretes follicular stimulating hormone (FSH) and luteinizing hormone (LH). + GOC:tfm + ISBN:0517223651 + http://en.wikipedia.org/wiki/Gonadotroph + + + + + + + + + + + + + + + + + + + A peptide hormone secreting cell pituitary that produces luteinizing hormone. + cell + luteinizing hormone secreting cell + + + + + A peptide hormone secreting cell pituitary that produces luteinizing hormone. + GOC:tfm + + + + + + + + + + + + + + + + + + + A peptide hormone cell that secretes prolactin. + cell + prolactin secreting cell + + + + + A peptide hormone cell that secretes prolactin. + GOC:tfm + SANBI:mhl + + + + + + + + + + + + + + + + + + + A cell of the intermediate pituitary that produces melanocyte stimulating hormone. + BTO:0002277 + melanotrope + melanotroph + cell + melanocyte stimulating hormone secreting cell + + + + + A cell of the intermediate pituitary that produces melanocyte stimulating hormone. + SANBI:mhl + + + + + + + + + FBbt:00004903 + cell + follicle stem cell + + + + + + + + + A cell with extensive dendritic processes found in the B cell areas (primary follicles and germinal centers) of lymphoid tissue. They are unrelated to the dendritic cell associated with T cells. Follicular dendritic cells have Fc receptors and C3b receptors, but unlike other dendritic cells, they do not process or present antigen in a way that allows recognition by T cells. Instead, they hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response. + BTO:0004267 + FMA:83037 + cell + Due to its unique lineage and distinct function, this is not a type of dendritic cell; CL:0000451. + follicular dendritic cell + + + + + A cell with extensive dendritic processes found in the B cell areas (primary follicles and germinal centers) of lymphoid tissue. They are unrelated to the dendritic cell associated with T cells. Follicular dendritic cells have Fc receptors and C3b receptors, but unlike other dendritic cells, they do not process or present antigen in a way that allows recognition by T cells. Instead, they hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response. + ISBN:127520252 + + + + + + + + + + + + + + + + + + + cell + calcitonin secreting cell + + + + + + + + + + + + + + + + + + + + + + + A muscle cell in which the fibers are organised into sarcomeres but in which adjacent myofibrils are offset from each other, producing an oblique banding pattern. + cell + Examples include the somatic muscles of nemotodes and cephalopods. + obliquely striated muscle cell + + + + + A muscle cell in which the fibers are organised into sarcomeres but in which adjacent myofibrils are offset from each other, producing an oblique banding pattern. + GOC:DOS + PMID:8720463 + + + + + + + + + cell + apoptosis fated cell + + + + + + + + + + An epithelial cell of the parathyroid gland that is arranged in wide, irregular interconnecting columns; responsible for the synthesis and secretion of parathyroid hormone. + BTO:0004712 + CALOHA:TS-2140 + FMA:69078 + parathyroid chief cell + parathyroid gland chief cell + parathyroid hormone secreting cell + principal cell of parathyroid gland + cell + chief cell of parathyroid gland + + + + + An epithelial cell of the parathyroid gland that is arranged in wide, irregular interconnecting columns; responsible for the synthesis and secretion of parathyroid hormone. + FMA:69078 + GOC:tfm + ISBN:0517223651 + + + + + + + + + cell + carbohydrate secreting cell + + + + + + + + + + + + + + + + + + + + + Fat cells with light coloration and few mitochondria. They contain a scant ring of cytoplasm surrounding a single large lipid droplet or vacuole. + CALOHA:TS-1119 + FMA:83434 + white adipose cell + white fat cell + cell + white adipocyte + white fat cell + + + + + Fat cells with light coloration and few mitochondria. They contain a scant ring of cytoplasm surrounding a single large lipid droplet or vacuole. + GOC:tfm + MESH:A11.329.114.500 + + + + + + + + + + + + + + + + + + + + + A cell from the thermogenic form of adipose tissue found in many species, particularly in newborns and hibernating mammals, but also in lesser amounts in adults of other mammals including humans. Brown fat is capable of rapid liberation of energy and seems to be important in the maintenance of body temperature immediately after birth and upon waking from hibernation. + CALOHA:TS-0099 + FMA:83435 + brown adipocyte + brown adipose cell + cell + brown fat cell + + + + + A cell from the thermogenic form of adipose tissue found in many species, particularly in newborns and hibernating mammals, but also in lesser amounts in adults of other mammals including humans. Brown fat is capable of rapid liberation of energy and seems to be important in the maintenance of body temperature immediately after birth and upon waking from hibernation. + MESH:A10.165.114.322 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative). + BTO:0002042 + CALOHA:TS-0194 + FMA:83036 + cell + interdigitating cell + veiled cell + dendritic cell + + + + + + true + + + + + A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative). + GOC:add + ISBN:0781735149 + + + + + + + + + cell + thyroid hormone secreting cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Langerhans cell is a conventional dendritic cell that has plasma membrane part CD207. A Langerhans cell is a stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus. + BTO:0000705 + CALOHA:TS-2375 + FMA:63072 + LC + Langerhans' cell + cell + Originally described in the dendritic cell ontology (DC_CL:0000021 )(PMID:19243617). These cells are also CD1a-high, CD14-negative, CD207-positive (langerin), CD324-positive (E-cadherin), and DCIR-positive. They reside in the epidermis. + Langerhans cell + + + + + + true + + + + + Langerhans cell is a conventional dendritic cell that has plasma membrane part CD207. A Langerhans cell is a stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus. + GOC:add + GOC:amm + GO_REF:0000031 + ISBN:0721601464 + ISBN:0781735149 + PMCID:PMC2346585 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + A cell capable of producing epinephrine. Epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme, which is expressed in the adrenal glands, androgenic neurons, and in other cell types. + adrenaline secreting cell + epinephrin secreting cell + cell + epinephrine secreting cell + + + + + A cell capable of producing epinephrine. Epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme, which is expressed in the adrenal glands, androgenic neurons, and in other cell types. + GOC:tfm + PMID:12438093 + + + + + adrenaline secreting cell + GO:0048242 + + + + + + + + Obsolete. Use PO:0004531 from Plant Ontology instead. A cell characterized by conspicuous and rather stable accumulation of starch. + cell + replaced_by: PO:0004531 + obsolete starch sheath cell + true + + + + + Obsolete. Use PO:0004531 from Plant Ontology instead. A cell characterized by conspicuous and rather stable accumulation of starch. + ISBN:044174520 + + + + + + + + + + + + + + + + + + + cell + mineralocorticoid secreting cell + + + + + + + + + cell + biogenic amine secreting cell + + + + + + + + + + + + + + + + + + + + A cell type that secretes 5-Hydroxytryptamine (serotonin). + 5-HT secreting cell + 5-Hydroxytryptamine secreting cell + cell + serotonin secreting cell + + + + + A cell type that secretes 5-Hydroxytryptamine (serotonin). + GOC:tfm + PMID:19630576 + + + + + + + + + + + + + + + + + + + + A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme. + noradrenaline secreting cell + norepinephrin secreting cell + norepinephrine secreting cell + cell + noradrenergic cell + + + + + A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme. + GOC:tfm + ISBN:068340007X + + + + + + + + + + + + + + + + + + + cell + glucocorticoid secreting cell + + + + + + + + + FBbt:00003219 + cell + adepithelial cell + + + + + + + + + + + + + + + An epidermal cell that secretes chitinous cuticle from its apical side. + cell + While insect epidermis is generally columnar/cuboidal, there are certainly well studied cases where it is not (e.g.- Rhodnius prolixus when starved). So it would be safer to add this as a differentium for particular species where this is known. -DSJ. + epidermal cell (sensu arthropoda) + + + + + An epidermal cell that secretes chitinous cuticle from its apical side. + FlyBase:ds + ISBN:ISBN:978-0801481253 + + + + + + + + + + + + + + + + An epidermal progenitor cell that arises from neuroectoderm and in turn gives rise to the epidermal sheath of ventral and cephalic regions. + FBbt:00004994 + cell + epidermoblast + + + + + An epidermal progenitor cell that arises from neuroectoderm and in turn gives rise to the epidermal sheath of ventral and cephalic regions. + GOC:tfm + PMID:7576311 + + + + + + + + + FBbt:00001666 + cell + cardioblast (sensu Arthropoda) + + + + + + + + + + + + + + + + + + + A peptide hormone secreting cell that produces adrenocorticotropin, or corticotropin. + CL:0000640 + ACTH secreting cell + adrenocorticotrophic hormone secreting cell + corticotrophin hormone secreting cell + corticotropin hormone secreting cell + corticotropin secreting cell + cell + adrenocorticotropic hormone secreting cell + + + + + A peptide hormone secreting cell that produces adrenocorticotropin, or corticotropin. + GOC:tfm + SANBI:mhl + + + + + ACTH secreting cell + GO:0051458 + + + + + corticotropin secreting cell + GO:0051458 + + + + + + + + + + FBbt:00005147 + cell + neuroglioblast + + + + + + + + + FBbt:00005149 + cell + ganglion mother cell + + + + + + + + + cell + digestive enzyme secreting cell + + + + + + + + Obsolete. Use PO:0000076 from Plant Ontology instead. OBSOLETE, use term from Plant Ontology. Parenchyma cells containing chloroplasts; a component of leaf mesophyll and other green parenchyma tissue. + cell + replaced_by: PO:0000076 + obsolete chlorenchyma cell + true + + + + + Obsolete. Use PO:0000076 from Plant Ontology instead. OBSOLETE, use term from Plant Ontology. Parenchyma cells containing chloroplasts; a component of leaf mesophyll and other green parenchyma tissue. + ISBN:0471245208 + + + + + + + + + A cell whose primary function is to protect the organism. + cell + defensive cell + + + + + A cell whose primary function is to protect the organism. + JB:jb + + + + + + + + + + an insect renal cell that filters hemolymph and is found with other pericardial nephrocytes in two rows flanking the dorsal vessel. + FBbt:00005058 + pericardial cell + cell + pericardial nephrocyte + + + + + an insect renal cell that filters hemolymph and is found with other pericardial nephrocytes in two rows flanking the dorsal vessel. + FBbt:00003184 + GO:0061320 + GOC:tfm + PMID:19783135 + + + + + pericardial cell + FBbt:00005058 + GO:0061320 + + + + + + + + Obsolete. Use PO:0000245 from Plant Ontology instead. In monosporic and bisporic megasporogenesis: the megaspore(s) that do not participate in megagametogenesis. + cell + replaced_by: PO:0000245 + obsolete degenerate megaspore + true + + + + + Obsolete. Use PO:0000245 from Plant Ontology instead. In monosporic and bisporic megasporogenesis: the megaspore(s) that do not participate in megagametogenesis. + TAIR:lr + + + + + + + + + + + + + + + A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. This cell type is elongated, polygonal and lie in clusters towards the adenohypophyseal center. + FMA:83099 + beta-basophil + thyroid stimulating hormone secreting cell + thyrotrope + cell + thyrotroph + + + + + A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. This cell type is elongated, polygonal and lie in clusters towards the adenohypophyseal center. + ISBN:0517223651 + SANBI:mhl + + + + + + + + + + + + + + + FBbt:00004904 + ovarian follicle cell + cell + Editors note: check this. Currently used in goxp + follicle cell + + + + + ovarian follicle cell + GO:0007297 + + + + + + + + + A peptide hormone secreting cell that secretes oxytocin stimulating hormone + cell + oxytocin stimulating hormone secreting cell + + + + + A peptide hormone secreting cell that secretes oxytocin stimulating hormone + GO:tfm + + + + + + + + + A peptide hormone secreting cell that secretes vasopressin stimulating hormone + cell + vasopressin stimulating hormone secreting cell + + + + + A peptide hormone secreting cell that secretes vasopressin stimulating hormone + GO:tfm + + + + + + + + + A peptide hormone secreting cell that secretes secretin stimulating hormone + cell + secretin stimulating hormone secreting cell + + + + + A peptide hormone secreting cell that secretes secretin stimulating hormone + GO:tfm + + + + + + + + + A peptide hormone secreting cell that secretes cholecystokin stimulating hormone + cell + cholecystokin stimulating hormone secreting cell + + + + + A peptide hormone secreting cell that secretes cholecystokin stimulating hormone + GO:tfm + + + + + + + + + + + + + + + + + + + An endocrine cell that secretes juvenile hormone. + cell + juvenile hormone secreting cell + + + + + An endocrine cell that secretes juvenile hormone. + GO:tfm + + + + + + + + + A peptide hormone secreting cell that secretes cholecystokin stimulating hormone + cell + bombesin stimulating hormone secreting cell + + + + + A peptide hormone secreting cell that secretes cholecystokin stimulating hormone + GO:tfm + + + + + + + + + + + + + + + + + + + + Mast cell subtype whose granules contain both the serine proteases tryptase and chymase. These cells are primarily found in connective tissue, such as the peritoneal cavity, skin, and intestinal submucosa. Their development is T-cell independent. + MC(TC) + MCTC + TC mast cells + cell + They are CD88-positive. The cytoplasmic granules contain high levels of histamine and heparin (mouse) or major neutral proteases, tryptase, chymase, carboxypeptidase A, and cathepsin G (humans). Reportedly, they cannot produce leukotrienes (LTC4) and IL-4. They are reportedly very heterogeneous depending upon location and can convert to the MC(T) phenotype. + connective tissue type mast cell + + + + + + true + + + + + Mast cell subtype whose granules contain both the serine proteases tryptase and chymase. These cells are primarily found in connective tissue, such as the peritoneal cavity, skin, and intestinal submucosa. Their development is T-cell independent. + GOC:add + GOC:dsd + GOC:tfm + PMID:19923473 + PMID:9354811 + + + + + + + + + + + + + + + + + + + + + + + + Mast cell subtype that contains only the serine protease trypase in its granules. These cells are primarily found in mucosal tissue, such as intestinal mucosa and alveoli. They depend upon T-cells for development of phenotype. + MC(T) + MCT + T mast cells + cell + They are CD88-negative. The cytoplasmic granules contain low levels of histamine and high levels of chondroitin sulfate (mouse) or major neutral proteases and tryptase (humans). Additionally, they can produce leukotrienes (LTC4), IL-5, IL-6, and low levels of IL-4. They are reportedly very heterogeneous depending upon location and can convert to the MC(T) phenotype. + mucosal type mast cell + + + + + + true + + + + + Mast cell subtype that contains only the serine protease trypase in its granules. These cells are primarily found in mucosal tissue, such as intestinal mucosa and alveoli. They depend upon T-cells for development of phenotype. + GOC:add + GOC:dsd + PMID:19923473 + PMID:9354811 + + + + + + + + + + + A large binucleate cell that forms a 'garland' around the anterior end of the proventriculus (cardia) at its junction with the esophagus in both adults and larvae flies. Each cell is surrounded by a basement membrane and there are numerous micro-invaginations (lacunae) extending from the surface into the cytoplasm. At the mouth of each lacuna is a doubled filament forming a specialised filtration system (diaphragm). The filtrate is endocytosed from the lacunae. + garland nephrocyte + BTO:0004596 + FBbt:00005059 + cell + garland cell + + + + + A large binucleate cell that forms a 'garland' around the anterior end of the proventriculus (cardia) at its junction with the esophagus in both adults and larvae flies. Each cell is surrounded by a basement membrane and there are numerous micro-invaginations (lacunae) extending from the surface into the cytoplasm. At the mouth of each lacuna is a doubled filament forming a specialised filtration system (diaphragm). The filtrate is endocytosed from the lacunae. + GOC:tfm + PMID:19783135 + fbbt:00005059 + + + + + garland nephrocyte + GO:0061321 + + + + + + + + + A large secretory cell found in clusters underlying the epidermis of the abdominal segments of larval abdominal segments. + FBbt:00004995 + cell + oenocyte + + + + + A large secretory cell found in clusters underlying the epidermis of the abdominal segments of larval abdominal segments. + GOC:bf + PMID:11171397 + + + + + + + + + + + + + + + + + + + + A photoreceptor cell that detects visible light. + cell + visible light photoreceptor cell + + + + + A photoreceptor cell that detects visible light. + GOC:tfm + + + + + + + + + cell + scotopic photoreceptor cell + + + + + + + + + cell + photopic photoreceptor cell + + + + + + + + OBSOLETE: A cell responsible for spontaneous cytotoxicity of a variety of tumor cells without prior immunization. These natural killer cells are found in non-immune humans and experimental animals and are thought by some to be the same as killer cells (killing by antibody-dependent cell cytotoxicity), but they can also kill in the absence of antibody. + cell + This term had an incorrect definition and was overly broad. Consider using 'cytotoxic T cell ; CL:0000910' (in most cases) or another lymphocyte cell type if cytotoxicity is shown to be part of the cell's phenotype in a particular experimental situation. + obsolete cytotoxic T cell + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell that cooperates with other lymphocytes via direct contact or cytokine release to initiate a variety of immune functions. + CALOHA:TS-1146 + FMA:70572 + CD4-positive T-helper cell + CD4-positive helper T lymphocyte + CD4-positive helper T-cell + CD4-positive helper T-lymphocyte + cell + CD4-positive helper T cell + + + + + + true + + + + + A CD4-positive, alpha-beta T cell that cooperates with other lymphocytes via direct contact or cytokine release to initiate a variety of immune functions. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + MESH:A11.118.637.555.567.569.200.400 + + + + + + + + OBSOLETE: Subpopulation of CD4+ cells which induce CD8+ suppressor T cells to suppress antibody production by B cells. They also stimulate other cellular immune responses. + cell + This term was defined too narrowly; consider using the term 'regulatory T cell ; CL:0000815' instead. + obsolete regulatory T cell + true + + + + + + + + + + + + + + + + + + + + A photoreceptor cell that detects ultraviolet light. + cell + UV sensitive photoreceptor cell + + + + + A photoreceptor cell that detects ultraviolet light. + GOC:tfm + + + + + + + + + A photoreceptor cell that is sensitive to blue light. + cell + blue sensitive photoreceptor cell + + + + + A photoreceptor cell that is sensitive to blue light. + GO:tfm + + + + + + + + + A photoreceptor cell that is sensitive to green light. + cell + green sensitive photoreceptor cell + + + + + A photoreceptor cell that is sensitive to green light. + GO:tfm + + + + + + + + + A photoreceptor cell that is sensitive to red light. + cell + red sensitive photoreceptor cell + + + + + A photoreceptor cell that is sensitive to red light. + GO:tfm + + + + + + + + + An interneuron (also called relay neuron, association neuron or local circuit neuron) is a multipolar neuron which connects afferent neurons and efferent neurons in neural pathways. Like motor neurons, interneuron cell bodies are always located in the central nervous system (CNS). + FMA:84776 + cell + inhibitory interneuron + + + + + An interneuron (also called relay neuron, association neuron or local circuit neuron) is a multipolar neuron which connects afferent neurons and efferent neurons in neural pathways. Like motor neurons, interneuron cell bodies are always located in the central nervous system (CNS). + GOC:tfm + http://en.wikipedia.org/wiki/Interneuron + + + + + + + + + + + + + + + A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. + BTO:0002064 + FMA:83624 + cell + stromal cell + + + + + A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. + GOC:tfm + MESH:A11.329.830 + + + + + + + + + + cell + follicular epithelial cell + + + + + + + + + + A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors. + BTO:0000542 + CALOHA:TS-0729 + FMA:18718 + granulosa cell of ovary + cell + granulosa cell + + + + + A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors. + MESH:A05.360.319.114.630.535.200 + + + + + + + + + + + + + + + A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin. + FMA:62935 + D cell + cell + type D enteroendocrine cell + + + + + A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin. + MESH:A03.492.766.440.175 + + + + + + + + + + A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precusors of estrogens in the granulosa cells. + BTO:0002850 + FMA:18690 + cell + theca cell + + + + + A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precusors of estrogens in the granulosa cells. + MESH:A05.360.319.114.630.535.400 + + + + + + + + + + A enteroendocrine cell part of the glands of the gastric mucosa. They produce histamine and peptides such as chromogranins. This cell type respond to gastrin by releasing histamine which acts as a paracrine stimulator of the release of hydrochloric acid from the gastric parietal cells. + BTO:0002692 + ECL + cell + Consider enterochromaffin cell (CL:0002065). For several years this cell type was "enterochromaffin cell" despite a MESH dbxref and a free text definition that clearly meant enterochromaffin-like cell. + enterochromaffin-like cell + + + + + A enteroendocrine cell part of the glands of the gastric mucosa. They produce histamine and peptides such as chromogranins. This cell type respond to gastrin by releasing histamine which acts as a paracrine stimulator of the release of hydrochloric acid from the gastric parietal cells. + GOC:tfm + MESH:A06.224.365 + + + + + + + + + A peptide hormone secreting cell that secretes substance P. + cell + substance P secreting cell + + + + + A peptide hormone secreting cell that secretes substance P. + GO:tfm + + + + + + + + + An endorphine cell that secretes enkephalin. + cell + enkephalin secreting cell + + + + + An endorphine cell that secretes enkephalin. + GO:tfm + + + + + + + + + A peptide hormone secreting cell that secretes endorphin. + cell + endorphin secreting cell + + + + + A peptide hormone secreting cell that secretes endorphin. + GO:tfm + + + + + + + + + + + + + + + + + An endocrine cell found in the pyloric gland mucosa (antral mucosa) of the stomach of mammals and responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli. + BTO:0004108 + FMA:67609 + G cell + cell + type G enteroendocrine cell + + + + + An endocrine cell found in the pyloric gland mucosa (antral mucosa) of the stomach of mammals and responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli. + GOC:tfm + ISBN:0517223651 + MESH:A03.492.766.440.300 + + + + + + + + + A peptide hormone secreting cell that secretes gastrin. + cell + gastrin secreting cell + + + + + A peptide hormone secreting cell that secretes gastrin. + GO:tfm + + + + + + + + + + + + + + + + An epithelial cell found in the basal part of the intestinal glands (crypts of Lieberkuhn) including the appendix. Paneth cells synthesize and secrete lysozyme and cryptdins. Numerous in the deeper parts of the intestinal crypts, particularly in the duodenum, rich in zinc, contain large acidophilic granules, with irregular apical microvilli and prominent membrane-bound vacuoles containing matrix. + BTO:0000993 + FMA:62897 + cell + paneth cell + + + + + + true + + + + + An epithelial cell found in the basal part of the intestinal glands (crypts of Lieberkuhn) including the appendix. Paneth cells synthesize and secrete lysozyme and cryptdins. Numerous in the deeper parts of the intestinal crypts, particularly in the duodenum, rich in zinc, contain large acidophilic granules, with irregular apical microvilli and prominent membrane-bound vacuoles containing matrix. + GOC:tfm + ISBN:0517223651 + MESH:A03.492.411.369.700 + + + + + + + + + A peptide hormone secreting cell that secretes androgen binding protein. + cell + androgen binding protein secreting cell + + + + + A peptide hormone secreting cell that secretes androgen binding protein. + GO:tfm + + + + + + + + + A paracrine cell is a secretory cell that secretes an agonist into intercellular spaces in which it diffuses to a target cell other than that which produced it. + cell + paracrine cell + + + + + A paracrine cell is a secretory cell that secretes an agonist into intercellular spaces in which it diffuses to a target cell other than that which produced it. + GOC:tfm + ISBN:0198529171 + + + + + + + + + + + + + + + + + + + + + + + + A precursor cell destined to differentiate into cardiac muscle cell. + CL:0000714 + FMA:84797 + cardiac muscle progenitor cell + cardiomyocyte progenitor cell + cell + cardiac muscle myoblast + + + + + + true + + + + + A precursor cell destined to differentiate into cardiac muscle cell. + GOC:tfm + MESH:A11.635.470 + + + + + + + + + + + + + + + + + + + + A precursor cell destined to differentiate into smooth muscle myocytes. + FMA:84798 + myoblast, smooth muscle + cell + satellite cell + smooth muscle myoblast + + + + + + true + + + + + A precursor cell destined to differentiate into smooth muscle myocytes. + GOC:tfm + MESH:A11.635.510 + MESH:D032390 + + + + + myoblast, smooth muscle + MESH:D032390 + + + + + + + + + + + + + + + + + + + + + + + + + + A myoblast that differentiates into skeletal muscle fibers. + FMA:84799 + skeletal myoblast + cell + skeletal muscle myoblast + + + + + + true + + + + + A myoblast that differentiates into skeletal muscle fibers. + SANBI:mhl + + + + + + + + + + + + + + + + A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia. + FMA:54550 + perineural satellite cell + perineuronal satellite oligodendroglial cell + satellite oligodendrocyte + cell + perineuronal satellite cell + + + + + A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia. + GOC:tfm + MESH:A08.340.685 + + + + + + + + + + + + + + + A type of foam cell derived from a macrophage containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. + cell + macrophage derived foam cell + + + + + A type of foam cell derived from a macrophage containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. + GOC:add + PMID:20213546 + + + + + + + + + A phagocyte in vertebrates that is able to phagocytosis. + cell + phagocyte (sensu Vertebrata) + + + + + A phagocyte in vertebrates that is able to phagocytosis. + GOC:tfm + + + + + + + + + A phagocyte from organisms in the Nematoda or Protostomia clades. + cell + phagocyte (sensu Nematoda and Protostomia) + + + + + A phagocyte from organisms in the Nematoda or Protostomia clades. + GOC:tfm + + + + + + + + + cell + prokaryotic cell + + + + + + + + + + cell + fungal cell + + + + + + + + OBSOLETE: The reproductive structure of bacteria, fungi and cryptograms. + cell + obsolete spore + true + + + + + OBSOLETE: The reproductive structure of bacteria, fungi and cryptograms. + ISBN:08199377X + + + + + + + + + A cell from the inner layer of the trophoblast of the early mammalian embryo that gives rise to the outer surface and villi of the chorion. Mononuclear crytoblasts fuse to give rise to a multinuclear cytotrophoblast. + FMA:83042 + Langhans' cell + cell + mononuclear cytotrophoblast cell + + + + + A cell from the inner layer of the trophoblast of the early mammalian embryo that gives rise to the outer surface and villi of the chorion. Mononuclear crytoblasts fuse to give rise to a multinuclear cytotrophoblast. + GOC:tfm + ISBN:0323052908 + + + + + + + + + A cell, usually of bacteria or yeast, which has partially lost its cell wall. + sphaeroplast + cell + spheroplast + + + + + A cell, usually of bacteria or yeast, which has partially lost its cell wall. + MESH:A11.868 + + + + + + + + + + A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. + FMA:83043 + plasmidotrophoblast + syncytial trophoblast + syntrophoblast + cell + syncytiotrophoblast cell + + + + + A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. + GOC:tfm + ISBN:0323052908 + + + + + + + + + A neuron which conveys sensory information centrally from the periphery. + FMA:87653 + input neuron + cell + afferent neuron + + + + + A neuron which conveys sensory information centrally from the periphery. + GOC:tfm + MESH:A08.663.650 + + + + + + + + + A neuron which sends impulses peripherally to activate muscles or secretory cells. + output neuron + cell + efferent neuron + + + + + A neuron which sends impulses peripherally to activate muscles or secretory cells. + MESH:A08.663.655 + + + + + + + + + A nerve cell where transmission is mediated by nitric oxide. + FMA:84792 + cell + nitrergic neuron + + + + + A nerve cell where transmission is mediated by nitric oxide. + MESH:A08.663.748 + + + + + + + + + cell + pigmented epithelial cell + + + + + + + + + cell + primary neuron + + + + + + + + + + + + + + + + cell + primary sensory neuron + + + + + + + + + cell + CAP motoneuron + + + + + + + + + + FMA:83619 + cell + primary motor neuron + + + + + + + + + + cell + primary interneuron + + + + + + + + + cell + secondary neuron + + + + + + + + + + + + + + + + FMA:83620 + cell + secondary motor neuron + + + + + + + + Obsolete. Use PO:0020093 from Plant Ontology instead. OBSOLETE, use term from plant ontology. A cell located at the chalazal end of the mature embryo sac in angiosperms. + cell + replaced_by: PO:0020093 + obsolete antipodal cell + true + + + + + Obsolete. Use PO:0020093 from Plant Ontology instead. OBSOLETE, use term from plant ontology. A cell located at the chalazal end of the mature embryo sac in angiosperms. + ISBN:047125208 + + + + + + + + Obsolete. Use PO:0000349 from Plant Ontology instead. A relatively unspecialized cell that will give rise to specialized cell types of the epidermis. + cell + replaced_by: PO:0000349 + obsolete epidermal initial + true + + + + + Obsolete. Use PO:0000349 from Plant Ontology instead. A relatively unspecialized cell that will give rise to specialized cell types of the epidermis. + TAIR:lr + + + + + + + + OBSOLETE: A cell in a tissue that markedly differs in form, size, or contents from other cells in the same tissue. + cell + obsolete idioblast + true + + + + + OBSOLETE: A cell in a tissue that markedly differs in form, size, or contents from other cells in the same tissue. + ISBN:0471245208 + + + + + + + + + + + + + + + + + + + + + + + The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. + BTO:0000938 + CALOHA:TS-0683 + FBbt:00005106 + FMA:54527 + VHOG:0001483 + WBbt:0003679 + nerve cell + cell + These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. + neuron + + + + + The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. + MESH:A08.663 + MESH:D009474 + http://en.wikipedia.org/wiki/Neuron + + + + + + + + + + + + + + + + A cell that originates from the neural crest and differentiates into a pigment cell. + BTO:0003217 + FMA:83377 + cell + Derived from UBERON:0002342 neural crest. + melanoblast + + + + + A cell that originates from the neural crest and differentiates into a pigment cell. + GOC:tfm + SANBI:mhl + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin. + BTO:0000775 + CALOHA:TS-0583 + FMA:62863 + VHOG:0001535 + cell + Editors note: consider adding taxon constraint to vertebrata (PMID:18025161) + lymphocyte + + + + + + true + + + + + A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin. + GOC:add + ISBN:0683073696 + ISBN:0781735149 + + + + + + + + Obsolete. Use PO:0000289 from Plant Ontology instead. One of the series of cellular components of a sieve tube. It shows a more or less pronounced differentiation between sieve plates (wide pores) and lateral sieve areas (narrow pores). Also sieve tube element and the obsolete sieve tube segment. + sieve tube element + cell + replaced_by: PO:0000289 + obsolete sieve tube member + true + + + + + Obsolete. Use PO:0000289 from Plant Ontology instead. One of the series of cellular components of a sieve tube. It shows a more or less pronounced differentiation between sieve plates (wide pores) and lateral sieve areas (narrow pores). Also sieve tube element and the obsolete sieve tube segment. + ISBN:0471245208 + + + + + + + + + cell + slowly adapting mechanoreceptor cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive, CXCR3-positive, CCR6-negative, and is capable of producing interferon-gamma. + BTO:0001678 + FMA:84382 + T helper cells type 1 + T(H)-1 cell + Th1 CD4+ T cell + Th1 T cell + Th1 T lymphocyte + Th1 T-cell + Th1 T-lymphocyte + Th1 cell + helper T cell type 1 + cell + This cell type is compatible with the HIPC Lyoplate markers for 'Th1 CD4+ T cell', but its logical definition includes additional known characteristics of T-helper 1 T cells. + T-helper 1 cell + + + + + + true + + + + + A CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive, CXCR3-positive, CCR6-negative, and is capable of producing interferon-gamma. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19375293 + PMID:20303875 + PMID:22343568 + + + + + T helper cells type 1 + PMID:9419219 + + + + + Th1 CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive, CXCR3-negative, CCR6-negative, and is capable of producing interleukin-4. + BTO:0001679 + FMA:84385 + T helper cells type 2 + T(H)-2 cell + Th2 T cell + Th2 T lymphocyte + Th2 T-cell + Th2 T-lymphocyte + Th2 cell + helper T cell type 2 + cell + This cell type is compatible with the HIPC Lyoplate markers for 'non-Th1/Th17 CD4+ T cell' (see CL:0001051), but includes the additional necessary and sufficient conditions to allow classification as a T-helper 2 T cell. + T-helper 2 cell + + + + + + true + + + + + A CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive, CXCR3-negative, CCR6-negative, and is capable of producing interleukin-4. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19375293 + PMID:20103781 + PMID:22343568 + + + + + T helper cells type 2 + PMID:9419219 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers. + FMA:83518 + rubriblast + cell + pronormoblast + proerythroblast + + + + + + true + + + + + An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers. + ISBN:0721601464 + MESH:A11.118.290.350.200 + PMID:1638021 + + + + + rubriblast + ISBN:0721601464 + + + + + + + + + cell + + animal cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers. + FMA:83505 + basophilic normoblast + early erythroblast + early normoblast + prorubricyte + cell + basophilic erythroblast + + + + + + true + + + + + A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers. + GOC:tfm + ISBN:0721601464 + + + + + basophilic normoblast + ISBN:0721601464 + + + + + early erythroblast + ISBN:0721601464 + + + + + early normoblast + ISBN:0721601464 + + + + + prorubricyte + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers. + FMA:83506 + intermediate erythroblast + intermediate normoblast + polychromatic erythroblast + polychromatic normoblast + polychromatophilic normoblast + rubricyte + cell + polychromatophilic erythroblast + + + + + + true + + + + + A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers. + ISBN:0721601464 + + + + + intermediate erythroblast + ISBN:0721601464 + + + + + intermediate normoblast + ISBN:0721601464 + + + + + polychromatic erythroblast + ISBN:0721601464 + + + + + polychromatic normoblast + ISBN:0721601464 + + + + + polychromatophilic normoblast + ISBN:0721601464 + + + + + rubricyte + ISBN:0721601464 + + + + + + + + + cell + unimodal nocireceptor + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated. + FMA:84646 + acidophilic erythroblast + eosinophilic erythroblast + late erythoblast + orthochromatic normoblast + pyknotic eto enrythroblast + cell + orthochromatic erythroblast + + + + + + true + + + + + The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated. + ISBN:0721601464 + + + + + acidophilic erythroblast + ISBN:0721601464 + + + + + eosinophilic erythroblast + ISBN:0721601464 + + + + + orthochromatic normoblast + ISBN:0721601464 + + + + + pyknotic eto enrythroblast + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative). + BTO:0001164 + CALOHA:TS-0610 + FMA:84235 + CFU-Meg + Meg-CFC + MkP + colony-forming unit-megakaryocyte + megacaryoblast + megacaryocyte progenitor cell + megakaryoblast + megakaryocytic progenitor cell + cell + promegacaryocyte + promegakaryocyte + Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative. + megakaryocyte progenitor cell + + + + + + true + + + + + The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative). + GOC:dsd + GOC:tfm + ISBN:0721601464 + + + + + CFU-Meg + PMID:11722431 + PMID:12482498 + + + + + Meg-CFC + PMCID:PMC1794060 + + + + + MkP + PMID:21116988 + + + + + megakaryocytic progenitor cell + PMID:12482498 + + + + + + + + + A peptide hormone secreting cell that secretes gastrin stimulating hormone. + cell + gastrin stimulating hormone secreting cell + + + + + A peptide hormone secreting cell that secretes gastrin stimulating hormone. + GOC:tfm + + + + + + + + + cell + neuronal brush cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm. + BTO:0000843 + CALOHA:TS-0611 + FMA:83555 + megacaryocyte + megalocaryocyte + megalokaryocyte + cell + Megakaryocytes are reportedly CD181-positive and CD182-positive. + megakaryocyte + + + + + + true + + + + + A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm. + ISBN:0721601464 + MESH:D008533 + http://en.wikipedia.org/wiki/Megakaryocyte + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages. These cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1. + CFU-C , Colony forming unit in culture + CFU-GM + GMP + colony forming unit granulocyte macrophage + granulocyte-macrophage progenitor + granulocyte/monocyte precursor + granulocyte/monocyte progenitor + cell + Originally described in the dendritic cell ontology (DC_CL:0000042)(PMID:19243617). GMPs are reportedly CD16-positive, CD32-positive, CD34-positive, CD38-positive, CD45RA-positive, CD110-negative, CD117-positive, CD123-positive, and SCA1-negative. + granulocyte monocyte progenitor cell + + + + + + true + + + + + A hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages. These cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1. + GOC:amm + GOC:dsd + GOC:tfm + GO_REF:0000031 + ISBN:0721601464 + MESH:D055014 + PMCID:PMC2213186 + PMCID:PMC548021 + PMID:16551251 + PMID:16647566 + http://en.wikipedia.org/wiki/CFU-GM + http://www.copewithcytokines.de + + + + + CFU-C , Colony forming unit in culture + http://www.copewithcytokines.de + + + + + CFU-GM + ISBN:0721601464 + PMCID:PMC2213186 + PMCID:PMC548021 + + + + + GMP + ISBN:0721601464 + PMCID:PMC2213186 + PMCID:PMC548021 + + + + + colony forming unit granulocyte macrophage + ISBN:0721601464 + PMCID:PMC2213186 + PMCID:PMC548021 + + + + + granulocyte-macrophage progenitor + ISBN:0721601464 + PMCID:PMC2213186 + PMCID:PMC548021 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds. + BTO:0001173 + CALOHA:TS-0864 + cell + reticulocyte + + + + + + true + + + + + An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds. + GOC:add + GOC:tfm + PMID:15946868 + PMID:2037622 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. This cell is CD11b-positive and has fine azurophil granules. + BTO:0004657 + FMA:83551 + cell + Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. + promonocyte + + + + + + true + + + + + A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. This cell is CD11b-positive and has fine azurophil granules. + GOC:tfm + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A late neutrophilic metamyelocyte in which the nucleus is indented to more than half the distance to the farthest nuclear margin but in no area being condensed to a single filament. The nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil. These cells are fMLP receptor-positive, CD11b-positive, CD35-negative, and CD49d-negative. + band + band cell + band form + stab cell + rod neutrophil + cell + Found in the Band 1 fraction. + band form neutrophil + + + + + + true + + + + + A late neutrophilic metamyelocyte in which the nucleus is indented to more than half the distance to the farthest nuclear margin but in no area being condensed to a single filament. The nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil. These cells are fMLP receptor-positive, CD11b-positive, CD35-negative, and CD49d-negative. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + PMID:10618520 + PMID:12560239 + PMID:15514007 + http://www.cap.org + + + + + + + + + + + + + + + Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. They lack large axons. + BTO:0004044 + FBbt:00005127 + FMA:67766 + amacrine neuron + cell + Not clear if this term overlaps with retinal bipolar neuron (CL:0000748). + amacrine cell + + + + + Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. They lack large axons. + GOC:tfm + MESH:A08.663.358.050 + + + + + + + + + + + + + + + + + + + + + + + + + + An erythrocyte having a nucleus. + RBC + red blood cell + cell + nucleate erythrocyte + + + + + + true + + + + + An erythrocyte having a nucleus. + GOC:add + GOc:tfm + + + + + + + + + A rounded, inactive form that certain bacteria assume under conditions of extreme temperature, dryness, or lack of food. The bacterium develops a waterproof cell wall that protects it from being dried out or damaged. + BTO:0002779 + bacterial spore + cell + endospore + + + + + A rounded, inactive form that certain bacteria assume under conditions of extreme temperature, dryness, or lack of food. The bacterium develops a waterproof cell wall that protects it from being dried out or damaged. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A promyelocyte committed to the neutrophil lineage. This cell type is GATA-1-positive, C/EBPa-positive, AML-1-positive, MPO-positive, has low expression of PU.1 transcription factor and lacks lactotransferrin expression. + FMA:84196 + neutrophilic premyelocyte + neutrophilic progranulocyte + cell + These cells are CD11b-negative, CD15-positive, CD16-negative, CD49d-positive, CD68-positive, CD35-negative, and fMLP receptor-negative. They are found in the Band 3 fraction. + neutrophilic promyelocyte + + + + + + true + + + + + A promyelocyte committed to the neutrophil lineage. This cell type is GATA-1-positive, C/EBPa-positive, AML-1-positive, MPO-positive, has low expression of PU.1 transcription factor and lacks lactotransferrin expression. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + PMID:12560239 + PMID:15514007 + + + + + + + + + A cell found in fat bodies whose primary function is intermediary metabolism. + cell + fat body cell + + + + + A cell found in fat bodies whose primary function is intermediary metabolism. + FB:ma + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell capable of developing into blood vessel endothelium. + angioblast + chondroplast + cell + These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive. + angioblastic mesenchymal cell + + + + + + true + + + + + A mesenchymal stem cell capable of developing into blood vessel endothelium. + GOC:dsd + GOC:tfm + PMID:12768659 + + + + + + + + + cell + polymodal nocireceptor + + + + + + + + + A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell. + BTO:0003866 + FMA:83114 + APUD cell + cell + amine precursor uptake and decarboxylation cell + + + + + A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell. + GOC:tfm + ISBN:0721662544 + MESH:A11.070 + + + + + + + + + + + + + + + + + + + A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field. + cell + cardiac mesenchymal cell + + + + + A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field. + PMID:18816864 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A neuroepithelial cells that occurs singly or in small groups, close to the outer follicular borders but within the follicular basement membrane of the thyroid. Expresses a form of the neural cell adhesion molecule (N-CAM) on their surface. Secretes calcitonin, 5-hydroxytryptamine and dopamine. + FMA:68653 + SCTID:176770005 + C cell + C cell of thyroid gland + clear cell of thyroid gland + parafollicular cell of thyroid gland + thyroid parafollicular cell + cell + parafollicular cell + + + + + + true + + + + + + true + + + + + A neuroepithelial cells that occurs singly or in small groups, close to the outer follicular borders but within the follicular basement membrane of the thyroid. Expresses a form of the neural cell adhesion molecule (N-CAM) on their surface. Secretes calcitonin, 5-hydroxytryptamine and dopamine. + GOC:tfm + ISBN:0517223651 + + + + + C cell of thyroid gland + FMA:68653 + + + + + clear cell of thyroid gland + FMA:68653 + + + + + parafollicular cell of thyroid gland + FMA:68653 + + + + + thyroid parafollicular cell + FMA:68653 + + + + + + + + + + + + + + + A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light. + cell + leucophore + + + + + A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light. + SANBI:mhl + + + + + + + + + + + + + + + One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision. + BTO:0001036 + CALOHA:TS-0866 + FMA:67748 + cell + retinal cone cell + + + + + One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision. + MESH:A08.663.650.650.670.100 + + + + + + + + + + + + + + + A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance. + cell + erythrophore + + + + + A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance. + SANBI:mhl + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the cornea. + CL:1000431 + BTO:0004298 + CALOHA:TS-0173 + FMA:70551 + epithelial cell of cornea + cell + corneal epithelial cell + + + + + + true + + + + + An epithelial cell of the cornea. + GOC:tfm + + + + + epithelial cell of cornea + FMA:70551 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells. + BTO:0000876 + CALOHA:TS-0638 + FMA:62864 + cell + Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid. + monocyte + + + + + + true + + + + + Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells. + GO_REF:0000031 + MESH:A11.118.637.555.652 + + + + + + + + + + + + + + + + + + A subtype of enteroendocrine cells found in the gastrointestinal mucosa, particularly in the glands of pyloric antrum; duodenum; and ileum. These cell type secretes serotonin and some neurotransmitters including enkephalins and substance P. Their secretory granules stain readily with silver (argentaffin stain). + CL:0002065 + FMA:62934 + FMA:83132 + Kulchitsky cell + argentaffin cell + enterochromaffin cell + cell + type EC enteroendocrine cell + + + + + A subtype of enteroendocrine cells found in the gastrointestinal mucosa, particularly in the glands of pyloric antrum; duodenum; and ileum. These cell type secretes serotonin and some neurotransmitters including enkephalins and substance P. Their secretory granules stain readily with silver (argentaffin stain). + MESH:A03.492.766.440.250 + PMID:9505449 + + + + + + + + + A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure. + cell + This class has been re-labeled to imply reference only to in vitro experimentally modified cells, similarly, the definition has been slightly updated to reflect this. 'experimentally modified cell' refers only to cells in vitro, and not modified in vivo/in environment cells. There is currently no class representing unmodified in vitro cells (other than the parent 'cell in vitro'), or a class representing modified native cells. More granular subclassing of experimentally modified cell can be found in ReO. MHB 1.12.12 + experimentally modified cell in vitro + + + + + A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure. + FB:ma + ReO:mhb + + + + + + + + + FBbt:00004905 + cell + border follicle cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and neutrophil-specific granules has started. No nucleolus is present. This cell type is CD13-positive, CD16-negative, integrin alpha-M-positive, CD15-positive, CD33-positive, CD24-positive, C/EBP-a-positive, C/EBPe-positive, PU.1-positive, lactotransferrin-positive, myeloperoxidase-positive and NGAL-positive. + BTO:0003455 + FMA:83540 + cell + These cells are also CD15-positive, CD35-negative, CD49d-positive, and fMLP receptor-negative. They are found in the Band 2 fraction. + neutrophilic myelocyte + + + + + + true + + + + + A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and neutrophil-specific granules has started. No nucleolus is present. This cell type is CD13-positive, CD16-negative, integrin alpha-M-positive, CD15-positive, CD33-positive, CD24-positive, C/EBP-a-positive, C/EBPe-positive, PU.1-positive, lactotransferrin-positive, myeloperoxidase-positive and NGAL-positive. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + PMID:10618520 + PMID:12560239 + PMID:15514007 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A macrophage resident in the peritoneum under non-inflammatory conditions. Markers include F4/80-high, CD11b-high, CD68-positive, SIGNR1-positive, CD115-high, MHC-II-negative, and Dectin-1-positive. + BTO:0001034 + FMA:83025 + cell + Markers: Mouse: F4/80-high, CD11b-high, CD68+, SIGNR1+, Dectin-1+. + peritoneal macrophage + + + + + + true + + + + + A macrophage resident in the peritoneum under non-inflammatory conditions. Markers include F4/80-high, CD11b-high, CD68-positive, SIGNR1-positive, CD115-high, MHC-II-negative, and Dectin-1-positive. + MESH:A11.329.372.630 + PMID:15771589 + PMID:19201820 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare; and the cytoplasm becomes amphophilic like that of a mature granulocyte. This cell type is integrin alpha-M-positive, CD13-negative, CD15-positive, CD16-positive, CD33-positive, CD24-positive, fMLP receptor-negative and has expression of C/EBP-a, C/EBP-e, PU.1 transcription factor, lactotransferrin, myeloperoxidase and neutrophil gelatinase associated lipocalin. + FMA:84197 + juvenile neutrophil + cell + These cells are also CD35-negative, CD49d-positive, and fMLP receptor-negative. They are found in the Band 2 fraction. + neutrophilic metamyelocyte + + + + + + true + + + + + A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare; and the cytoplasm becomes amphophilic like that of a mature granulocyte. This cell type is integrin alpha-M-positive, CD13-negative, CD15-positive, CD16-positive, CD33-positive, CD24-positive, fMLP receptor-negative and has expression of C/EBP-a, C/EBP-e, PU.1 transcription factor, lactotransferrin, myeloperoxidase and neutrophil gelatinase associated lipocalin. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0721601464 + PMID:10618520 + PMID:12560239 + PMID:15514007 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage found in the alveoli of the lungs. Ingests small inhaled particles resulting in degradation and presentation of the antigen to immunocompetent cells. Markers include F4/80-positive, CD11b-/low, CD11c-positive, CD68-positive, sialoadhesin-positive, dectin-1-positive, MR-positive, CX3CR1-negative. + BTO:0000802 + CALOHA:TS-0030 + FMA:83023 + dust cell + cell + MF.Lu + Markers: Mouse: F4/80mid, CD11b-/low, CD11c+, CD68+, sialoadhesin+, dectin-1+, MR+, CX3CR1-. + alveolar macrophage + + + + + + true + + + + + A tissue-resident macrophage found in the alveoli of the lungs. Ingests small inhaled particles resulting in degradation and presentation of the antigen to immunocompetent cells. Markers include F4/80-positive, CD11b-/low, CD11c-positive, CD68-positive, sialoadhesin-positive, dectin-1-positive, MR-positive, CX3CR1-negative. + GOC:ana + GOC:dsd + GOC:tfm + GO_REF:0000031 + MESH:A11.329.372.600 + + + + + + + + + + + An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen. + BTO:0000398 + FMA:62122 + cell + enterocyte + + + + + An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen. + SANBI:mhl + + + + + + + + OBSOLETE: A class of lymphocytes characterized by the lack of surface markers specific for either T or B cells. + cell + This term is rather archaic; consider using 'natural killer cell ; CL:0000623', 'pro-B cell ; CL:0000826', 'pro-T cell ; CL:0000827', or other appropriate lymphocyte-related term depending on the context. + obsolete null cell + true + + + + + + + + + + + + + + + The reproductive cell in multicellular organisms. + BTO:0000535 + VHOG:0001534 + WBbt:0006796 + cell + germ cell + + + + + + true + + + + + The reproductive cell in multicellular organisms. + MESH:A05.360.490 + + + + + + + + + A thermoreceptor cell that detects reduced temperatures. + cell + cold sensing thermoreceptor cell + + + + + A thermoreceptor cell that detects reduced temperatures. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A specialized osteoclast associated with the absorption and removal of cementum. + BTO:0002516 + FMA:83027 + cell + odontoclast + + + + + + true + + + + + A specialized osteoclast associated with the absorption and removal of cementum. + GOC:add + MESH:A11.329.679 + + + + + + + + + A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated. + inner hair cell + BTO:0003667 + FMA:62365 + cell + cochlear inner hair cell + + + + + A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated. + MESH:A08.663.650.250.250 + + + + + + + + + + + + + + + + A progesterone secreting cell in the corpus luteum that develops from theca cells. + BTO:0002850 + FMA:18690 + small lutein cell + theca lutein cell + cell + small luteal cell + + + + + A progesterone secreting cell in the corpus luteum that develops from theca cells. + GOC:tfm + MESH:A05.360.319.114.630.278.400 + + + + + + + + + A thermoreceptor cell that detects reduced temperatures. + cell + warmth sensing thermoreceptor cell + + + + + A thermoreceptor cell that detects reduced temperatures. + GOC:tfm + + + + + + + + + + + + + + + + A large, progesterone secreting cell in the corpus luteum that develops from the granulosa cells. + FMA:18689 + granulosa lutein cell + cell + granulosoluteocytus + large luteal cell + + + + + A large, progesterone secreting cell in the corpus luteum that develops from the granulosa cells. + GOC:tfm + MESH:A05.360.319.114.630.278.400 + + + + + + + + + + + + + + + + + + + A steroid hormone secreting cell that secretes androgen. + cell + androgen secreting cell + + + + + A steroid hormone secreting cell that secretes androgen. + GOC:tfm + + + + + + + + + + + + + + + An elongated, spindle-shaped, cell that is located between the basal lamina and the plasmalemma of a muscle fiber. These cells are mostly quiescent, but upon activation they divide to produce cells that generate new muscle fibers. + cell + Skeletal muscle satellite cells are not traditionally referred to as myoblasts. They are a heterogeneous population whose division, following activiation, contributes to the formation of skeletal muscle fibers and to maintenance of the skeletal muscle statelite cell population. + skeletal muscle satellite cell + + + + + An elongated, spindle-shaped, cell that is located between the basal lamina and the plasmalemma of a muscle fiber. These cells are mostly quiescent, but upon activation they divide to produce cells that generate new muscle fibers. + GOC:tfm + MESH:A11.635.500.700 + PMID:21849021 + PMID:23303905 + + + + + + + + + + + + + + + + + + + + + + + + + + An erythrocyte lacking a nucleus. + RBC + red blood cell + cell + enucleate erythrocyte + + + + + + true + + + + + An erythrocyte lacking a nucleus. + GOC:add + GOC:tfm + + + + + + + + + A spore formed following meiosis. Sometimes following meiosis, prospores may undergo one or more rounds of mitosis before they are fully mature. + FAO:0000017 + meiotically-derived spore + cell + sexual spore + + + + + A spore formed following meiosis. Sometimes following meiosis, prospores may undergo one or more rounds of mitosis before they are fully mature. + FAO:0000017 + GOC:tfm + SGD:clt + + + + + + + + + The smaller of two types of asexual spores formed by some fungi. An ovoid to pear-shaped asexual spore that contains very little cytoplasm and organelles, is uninucleate, and forms in vegetative hypae within a mycelium. Micronidia are extruded from the hyphal cell wall. + FAO:0000028 + cell + microconidium + + + + + The smaller of two types of asexual spores formed by some fungi. An ovoid to pear-shaped asexual spore that contains very little cytoplasm and organelles, is uninucleate, and forms in vegetative hypae within a mycelium. Micronidia are extruded from the hyphal cell wall. + GOC:tfm + ISBN:0471940526 + PMID:8357339 + SGD:clt + + + + + + + + + Pyramidal neurons have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their region. Pyramidal neurons are found in the cerebral cortex, the hippocampus, and the amygdala. + BTO:0003102 + FMA:67310 + FMA:86775 + NIFSTD:sao862606388 + projection neuron + pyramidal cell + pyramidal neuron + cell + pyramidal neuron + + + + + Pyramidal neurons have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their region. Pyramidal neurons are found in the cerebral cortex, the hippocampus, and the amygdala. + GOC:tfm + MESH:A08.186.211.577.405.700 + + + + + + + + + An asexual, nonmotile spore formed by higher fungi; conidia are usually made from the side or tip of specialized sporogenous cells and do not form by progressive cleavage of the cytoplasm. + BTO:0000283 + FAO:0000024 + cell + conidium + + + + + An asexual, nonmotile spore formed by higher fungi; conidia are usually made from the side or tip of specialized sporogenous cells and do not form by progressive cleavage of the cytoplasm. + ISBN:08199377X + PMID:2524423 + PMID:9529886 + SGD:clt + + + + + + + + + + A fungal cell with two or more genetically distinct nuclei. + cell + heterokaryon + + + + + A fungal cell with two or more genetically distinct nuclei. + ISBN:08199377X + + + + + + + + + + + + + + + A mechanoreceptor in the organ of Corti. In mammals the outer hair cells are arranged in three rows which are further from the modiolus than the single row of inner hair cells. The motile properties of the outer hair cells may contribute actively to tuning the sensitivity and frequency selectivity of the cochlea. + BTO:0003666 + FMA:62366 + cochlear outer hair cell + cell + outer hair cell + + + + + A mechanoreceptor in the organ of Corti. In mammals the outer hair cells are arranged in three rows which are further from the modiolus than the single row of inner hair cells. The motile properties of the outer hair cells may contribute actively to tuning the sensitivity and frequency selectivity of the cochlea. + MESH:A08.663.650.250.315 + + + + + + + + + A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls. + cell + pressoreceptor cell + + + + + A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls. + MESH:A08.800.050.800.900.700 + + + + + + + + + + A fungal cell with two genetically distinct haploid nuclei. + cell + dikaryon + + + + + A fungal cell with two genetically distinct haploid nuclei. + ISBN:08199377X + + + + + + + + + + + + + + + One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision. + BTO:0001024 + CALOHA:TS-0870 + FMA:67747 + cell + retinal rod cell + + + + + One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision. + MESH:A08.663.650.650.670.650 + + + + + + + + + A spore formed following mitosis or mitoses. + FAO:0000023 + cell + fungal asexual spore + + + + + A spore formed following mitosis or mitoses. + GOC:tfm + PMID:2524423 + PMID:9529886 + SGD:clt + + + + + + + + + The larger of two types of asexual spores formed by some fungi; usually round or oblong. + FAO:0000038 + cell + macroconidium + + + + + The larger of two types of asexual spores formed by some fungi; usually round or oblong. + GOC:tfm + ISBN:0471940526 + SGD:clt + + + + + + + + + A thick walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete. + BTO:0000097 + FAO:0000020 + cell + ascospore + + + + + A thick walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete. + GOC:tfm + ISBN:08199377X + SGD:clt + + + + + + + + + A thick walled, sexual, resting spore formed by Zygomycetes; sometimes refers to the spore and the multi-layered cell wall that encloses the spore, the zygosporangium. + FAO:0000040 + cell + zygospore + + + + + A thick walled, sexual, resting spore formed by Zygomycetes; sometimes refers to the spore and the multi-layered cell wall that encloses the spore, the zygosporangium. + ISBN:0471940526 + ISBN:08199377X + SGD:clt + + + + + + + + + A mechanoreceptor located in the acoustic maculae and the semicircular canals that mediates the sense of balance, movement, and head position. The vestibular hair cells are connected to accessory structures in such a way that movements of the head displace their stereocilia. This influences the membrane potential of the cells which relay information about movements via the vestibular part of the vestibulocochlear nerve to the brain stem. + FMA:62351 + vestibular receptor cell + cell + vestibular hair cell + + + + + A mechanoreceptor located in the acoustic maculae and the semicircular canals that mediates the sense of balance, movement, and head position. The vestibular hair cells are connected to accessory structures in such a way that movements of the head displace their stereocilia. This influences the membrane potential of the cells which relay information about movements via the vestibular part of the vestibulocochlear nerve to the brain stem. + GOC:tfm + MESH:A08.663.650.250.380 + + + + + + + + PO:0009002 + cell + This term was obsoleted as it is redundant with PO:0009002 in the cell ontology (PO) + obsolete plant cell + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + EoP + cell + CFU-Eo + colony forming unit eosinophil + eosinophil stem cell + These cells are CD34-positive, CD45RA-negative, CD71-negative, and lineage-negative (CD2, CD3 epsilon, CD4, CD5, CD8a, CD14, CD19, CD20, integrin alpha-M, NCAM-1, SCA-1, Ly6G, Ly76). + eosinophil progenitor cell + + + + + + true + + + + + EoP + PMCID:PMC2212039 + PMCID:PMC2626675 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte;in this stage, production of primary granules is complete and eosinophil-specific granules has started. No nucleolus is present. These cells are integrin alpha-M-positive, CD13-positive, CD15-positive, CD16-negative, CD24-positive, and CD33-positive. + BTO:0003454 + FMA:83542 + cell + eosinophilic myelocyte + + + + + + true + + + + + A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte;in this stage, production of primary granules is complete and eosinophil-specific granules has started. No nucleolus is present. These cells are integrin alpha-M-positive, CD13-positive, CD15-positive, CD16-negative, CD24-positive, and CD33-positive. + GOC:add + GOC:dsd + ISBN:0721601464 + PMID:19622087 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell committed to the basophil lineage. This cell lacks hematopoietic lineage markers (lin-negative) and is CD34-positive, T1/ST2-low, CD117-negative, and FceRIa-high. This cell also expresses Gata-1, Gata-2 and C/EBPa. + BaP + cell + CFU-Bas + basophilic stem cell + colony forming unit basophil + BaP are also CD13-low and integrin beta-7-low. They are lin-negative (CD2, CD3e, CD4, CD5, CD8, CD11b, CD14, CD19, CD20, ly6g, ly76, and NCAM-1). They also lack expression of mast cell protease 1 (MCP-1) and microphthalmia-associated transcription factor (mitf). + basophil progenitor cell + + + + + + true + + + + + A progenitor cell committed to the basophil lineage. This cell lacks hematopoietic lineage markers (lin-negative) and is CD34-positive, T1/ST2-low, CD117-negative, and FceRIa-high. This cell also expresses Gata-1, Gata-2 and C/EBPa. + GOC:add + GOC:dsd + PMCID:PMC1312421 + http://www.copewithcytokines.de + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A basophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and basophil-specific granules has started. No nucleolus is present. Markers are being integrin alpha-M-positive, fucosyltransferase FUT4-positive, CD33-positive, CD24-positive, aminopeptidase N-positive. + BTO:0003456 + FMA:83543 + cell + basophilic myelocyte + + + + + + true + + + + + A basophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and basophil-specific granules has started. No nucleolus is present. Markers are being integrin alpha-M-positive, fucosyltransferase FUT4-positive, CD33-positive, CD24-positive, aminopeptidase N-positive. + GOC:add + GOC:tfm + ISBN:0721601464 + PMID:18466030 + http://www.cap.org + + + + + + + + + A thick walled spore containing one or more haploid nuclei produced by sexual reproduction in an Basidiomycete; formed externally on extrusions of the basidium. + BTO:0002166 + FAO:0000021 + cell + basidiospore + + + + + A thick walled spore containing one or more haploid nuclei produced by sexual reproduction in an Basidiomycete; formed externally on extrusions of the basidium. + GOC:clt + ISBN:0471940526 + ISBN:08199377X + + + + + + + + OBSOLETE: A walled spore produced in a sporangium. + cell + obsolete sporangiospore + true + + + + + OBSOLETE: A walled spore produced in a sporangium. + ISBN:08199377X + + + + + + + + + + + + + + + + + + + + A neuron that uses GABA as a vesicular neurotransmitter + FMA:84788 + WBbt:0005190 + GABA-ergic neuron + cell + GABAergic neuron + + + + + A neuron that uses GABA as a vesicular neurotransmitter + GOC:tfm + + + + + + + + + cell + sheath cell + + + + + + + + + + cell + support cell (sensu Nematoda) + + + + + + + + OBSOLETE: A sporangiospore that is motile, having flagella. + FAO:0000039 + cell + obsolete zoospore + true + + + + + OBSOLETE: A sporangiospore that is motile, having flagella. + ISBN:08199377X + + + + + + + + + + + + + + + A myoblast that is committed to a myotube-specific program of differentiation but not yet fused. It undergoes very limited additional proliferation. After fusion, it will take on a muscle identity specified by a `muscle founder cell` (CL:0008006). + cell + fusion competent myoblast + + + + + A myoblast that is committed to a myotube-specific program of differentiation but not yet fused. It undergoes very limited additional proliferation. After fusion, it will take on a muscle identity specified by a `muscle founder cell` (CL:0008006). + PMID:22274696 + + + + + + + + + + + + + + + + A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus). + FMA:83625 + acinic cell + acinous cell + cell + acinar cell + + + + + A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus). + GOC:tfm + http://www.copewithcytokines.de + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. + large granular lymphocyte + null cell + BTO:0000914 + BTO:0004716 + CALOHA:TS-0664 + FMA:63147 + FMA:83601 + VHOG:0001697 + NK cell + cell + natural killer cell + + + + + + true + + + + + A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. + GOC:add + ISBN:0781735149 + PMID:15771571 + + + + + + + + + + + + + + + + + + + + + + + + + A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor. + CD4-positive, alpha-beta T lymphocyte + CD4-positive, alpha-beta T-cell + CD4-positive, alpha-beta T-lymphocyte + cell + CD4-positive, alpha-beta T cell + + + + + + true + + + + + A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor. + GOC:add + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor. + CD8-positive, alpha-beta T lymphocyte + CD8-positive, alpha-beta T-cell + CD8-positive, alpha-beta T-lymphocyte + cell + CD8-positive, alpha-beta T cell + + + + + + true + + + + + A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + Granule cell that is part of the olfactory bulb. + cell + olfactory granule cell + + + + + Granule cell that is part of the olfactory bulb. + GOC:mah + + + + + + + + + A cell involved in transporting nutrients, minerals, water, gases and other chemicals between cells for a variety of purposes including conveying nutrition to other tissues, removing waste products from the tissues, conveying gases for respiration, distributing heat and repelling invasion of foreign substances. + cell + transporting cell + + + + + A cell involved in transporting nutrients, minerals, water, gases and other chemicals between cells for a variety of purposes including conveying nutrition to other tissues, removing waste products from the tissues, conveying gases for respiration, distributing heat and repelling invasion of foreign substances. + TAIR:sr + + + + + + + + + A cell that can perform photosynthesis, in which carbohydrates are synthesized from carbon dioxide and water, using light as the energy source. + cell + see PMID:21177950, The making of a photosynthetic animal. + photosynthetic cell + + + + + A cell that can perform photosynthesis, in which carbohydrates are synthesized from carbon dioxide and water, using light as the energy source. + TAIR:sr + + + + + + + + + A cell that is specialized to store a particular substance(s), which is(are) later released from the store for a particular purpose. + cell + storage cell + + + + + A cell that is specialized to store a particular substance(s), which is(are) later released from the store for a particular purpose. + FB:ma + + + + + + + + + A cell whose primary function is to support other cell types. + BTO:0002315 + cell + supportive cell + + + + + A cell whose primary function is to support other cell types. + FB:ma + GOC:tfm + + + + + + + + + Cells forming a framework supporting the organ of Corti. Specific cells are those of Claudius, Deiters and Hensen. + cell + labyrinth supporting cell + + + + + Cells forming a framework supporting the organ of Corti. Specific cells are those of Claudius, Deiters and Hensen. + MESH:A09.246.631.246.577.543 + + + + + + + + + + + + + + + + + + + + + + + + + + A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype, though it's not clear in the literature if this is terminally differentiated. This cell type comprises approximately 8-15% of total cells in the liver. + BTO:0002741 + CALOHA:TS-0452 + FMA:67763 + Ito cell + hepatic perisinusoidal cell + perisinusoidal cell + cell + fat-storing cell + lipocyte + vitamin A-storing cells + Hepatic stellate cells are CD271-positive, desmin-positive, DDR-2-positive, GFAP-positive, synamin-positive, synaptophysin-positive, vimentin-positive, They are capable of producing angiotensin II, fibronectin, laminin, MMP-1, MMP-2, MMP-3, MMP-9, MMP-11, TGF-beta1, TIMP-1, TIMP-2, type I collagen, type III collagen, type IV collagen, and type VI collagen. + hepatic stellate cell + + + + + + true + + + + + A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype, though it's not clear in the literature if this is terminally differentiated. This cell type comprises approximately 8-15% of total cells in the liver. + GOC:dsd + MESH:D055166 + PMID:12808230 + PMID:17239632 + PMID:18222966 + PMID:9302568 + http://en.wikipedia.org/wiki/Hepatic_stellate_cell + + + + + vitamin A-storing cells + PMID:12808230 + + + + + + + + + A tall supporting cell that is arranged in rows adjacent to the last row of outer phalangeal cells. This cell type constitutes the outer border of the organ of Corti. + FMA:79799 + Hensen's cell + cell of Hensen + external limiting cell of organ of Corti + cell + Hensen cell + + + + + A tall supporting cell that is arranged in rows adjacent to the last row of outer phalangeal cells. This cell type constitutes the outer border of the organ of Corti. + GOC:tfm + ISBN:0721662544 + + + + + + + + + A cuboidal cell which along with Boettcher's cells form the floor of the external spiral sulcus, external to the organ of Corti. + FMA:79802 + cell of Claudius + external supporting cell of vestibular epithelium + cell + external supporting cell of Claudius + Claudius cell + + + + + A cuboidal cell which along with Boettcher's cells form the floor of the external spiral sulcus, external to the organ of Corti. + GOC:tfm + ISBN:0721662544 + + + + + + + + + The outer phalangeal cells of the organ of Corti. This cell holds the base of the hair cell in a cup-shaped depression. + FMA:75725 + Deiters cell + outer phalangeal cell + cell + Deiter's cell + + + + + The outer phalangeal cells of the organ of Corti. This cell holds the base of the hair cell in a cup-shaped depression. + GOC:tfm + ISBN:0721662544 + http://www.britannica.com/EBchecked/topic/156177/Deiters-cell + + + + + + + + + BTO:0003064 + cell + Mueller cell + + + + + + + + + + + + + + + + + + + + + + + + + + A cell that stains readily in the anterior pituitary gland. + FMA:83089 + cell + chromophil cell of anterior pituitary gland + + + + + A cell that stains readily in the anterior pituitary gland. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + An acidophilic chromophil cell that of the anterior pituitary gland. + FMA:83093 + acidophil cell of pars anterior of adenohypophysis + acidophil of pars anterior of adenohypophysis + acidophil of pars distalis of adenohypophysis + pituitary alpha cell + cell + acidophil cell of pars distalis of adenohypophysis + + + + + An acidophilic chromophil cell that of the anterior pituitary gland. + GOC:tfm + + + + + + + + + A basophillic chromophil cell that of the anterior pituitary gland. + FMA:83094 + basophil cell of anterior lobe of hypophysis + cell + beta cell + pituitary beta cell + basophil cell of pars distalis of adenohypophysis + + + + + A basophillic chromophil cell that of the anterior pituitary gland. + GOC:tfm + + + + + + + + + A cell that is resistant to stains. + FMA:83626 + chromophobic cell + cell + chromophobe cell + + + + + A cell that is resistant to stains. + GOC:tfm + + + + + + + + + + A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones. + cell + folliculostellate cell + + + + + A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones. + JB:jb + + + + + + + + + Type of radial astrocyte in the cerebellar cortex that have their cell bodies in the Purkinje cell layer and processes that extend into the molecular layer, terminating with bulbous endfeet at the pial surface. Bergmann glia express high densities of glutamate transporters that limit diffusion of the neurotransmitter glutamate during its release from synaptic terminals. Besides their role in early development of the cerebellum, Bergmann glia are also required for the pruning or addition of synapses. + FMA:54559 + Bergmann astrocyte + Bergmann glial cell of cerebellum + cell + Bergmann glial cell + + + + + Type of radial astrocyte in the cerebellar cortex that have their cell bodies in the Purkinje cell layer and processes that extend into the molecular layer, terminating with bulbous endfeet at the pial surface. Bergmann glia express high densities of glutamate transporters that limit diffusion of the neurotransmitter glutamate during its release from synaptic terminals. Besides their role in early development of the cerebellum, Bergmann glia are also required for the pruning or addition of synapses. + GOC:tfm + http://www.neurolex.org/wiki/Category:Bergmann_Glial_Cell + + + + + + + + + A cell with long processes running parallel to adjacent axons in the proximal infundibulum of the neurohypophysis. These processes form a three-dimensional network among the axons of the hypothalamic neurosecretory cells and are connected by gap junctions which provide for their metabolic coupling. This cell type constitutes most of the nonexcitable tissue in the neurohypophsis; function may include possibly acting as an intermediate in the modulation of oxytocin and vasopressin release. This cell type is highly variable in size and shape and commonly contain lipid droplets and deposits of lipochrome pigment. + BTO:0003793 + FMA:83503 + cell + pituicyte + + + + + A cell with long processes running parallel to adjacent axons in the proximal infundibulum of the neurohypophysis. These processes form a three-dimensional network among the axons of the hypothalamic neurosecretory cells and are connected by gap junctions which provide for their metabolic coupling. This cell type constitutes most of the nonexcitable tissue in the neurohypophsis; function may include possibly acting as an intermediate in the modulation of oxytocin and vasopressin release. This cell type is highly variable in size and shape and commonly contain lipid droplets and deposits of lipochrome pigment. + ISBN:0412046911 + ISBN:0517223651 + http://en.wikipedia.org/wiki/Pituicyte + + + + + + + + + Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament. + BTO:0000939 + FMA:62516 + cell + basal cell + + + + + Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A phagocytic cell formed by the fusion of macrophages, occurs in chronic inflammatory responses to persistent microorganism such as M.tuberculosis, component of granulomas. Sometimes used to refer to megakaryocytes. + BTO:0003107 + FMA:83035 + Langerhans giant cell + foreign body giant cell + macrophage polykaryon + multinucleate giant cell + syncytial giant cell + cell + Role or process: Chronic infection, granulomatous inflammation. Consider also megakaryocyte (CL:0000556) as sometimes multinucleated giant cell is used to refer to this. + multinucleated giant cell + + + + + + true + + + + + A phagocytic cell formed by the fusion of macrophages, occurs in chronic inflammatory responses to persistent microorganism such as M.tuberculosis, component of granulomas. Sometimes used to refer to megakaryocytes. + GOC:add + GOC:tfm + ISBN:0702022918 + ISBN:0702024783 + + + + + Langerhans giant cell + ISBN:0702022918 + ISBN:0702024783 + + + + + foreign body giant cell + ISBN:0702022918 + ISBN:0702024783 + + + + + macrophage polykaryon + ISBN:0702022918 + ISBN:0702024783 + + + + + multinucleate giant cell + ISBN:0702022918 + ISBN:0702024783 + + + + + syncytial giant cell + ISBN:0702022918 + ISBN:0702024783 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation. + CL:0000461 + juxtaglomerular cell + FMA:84138 + JG cell + renin secreting cell + cell + kidney granular cell + + + + + A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation. + GOC:cvs + GOC:tfm + PMID:11457727 + + + + + + + + + + + + + + + A cell with delicate radiating processes known as desmosomes that form intercellular bridges between other cells of this type. This cell type forms the stratum spinosum (prickle cell layer). A function of this cell is to generate keratin. + CL:0002186 + FMA:69059 + prickle cell of epidermis + cell + prickle cell + + + + + A cell with delicate radiating processes known as desmosomes that form intercellular bridges between other cells of this type. This cell type forms the stratum spinosum (prickle cell layer). A function of this cell is to generate keratin. + GOC:tfm + ISBN:0721662544 + ISBN:0815332181 + + + + + + + + + + + + + + + A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries. + BTO:0000853 + CALOHA:TS-0617 + FMA:70972 + kidney mesangial cell + cell + Do all of these cells really develop from some mesenchymal stem cell? + mesangial cell + + + + + A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries. + GOC:tfm + http://www.copewithcytokines.de/cope.cgi?key=mesangial%20cells + + + + + + + + + + + + + + + A mucus-secreting cell, with numerous apical secretory vesicles containing mucins; nucleus are basally displaced; numerous at the neck of mucus secreting glands + neck cell + cell + mucous neck cell + + + + + A mucus-secreting cell, with numerous apical secretory vesicles containing mucins; nucleus are basally displaced; numerous at the neck of mucus secreting glands + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + This cell type produces and secretes melatonin and forms the pineal parenchyma. Extending from each cell body, which has a spherical, oval or lobulated mucleus, are one or more tortuous basophilic processes, containing parallel microtubules known as synaptic ribbons. These processes end in expanded terminal buds near capillaries or less, frequently, ependymal cells of the pineal recess. The terminal buds contain granular endoplasmic reticulum, mitochondria and electron-dense cored vesicles, which store monoamines and polypeptide hormones, release of which appears to require sympathetic innervation. + BTO:0001068 + FMA:83417 + cell + pinealocyte + + + + + This cell type produces and secretes melatonin and forms the pineal parenchyma. Extending from each cell body, which has a spherical, oval or lobulated mucleus, are one or more tortuous basophilic processes, containing parallel microtubules known as synaptic ribbons. These processes end in expanded terminal buds near capillaries or less, frequently, ependymal cells of the pineal recess. The terminal buds contain granular endoplasmic reticulum, mitochondria and electron-dense cored vesicles, which store monoamines and polypeptide hormones, release of which appears to require sympathetic innervation. + GOC:tfm + ISBN:0517223651 + PMID:16687276 + http://en.wikipedia.org/wiki/Pinealocyte + + + + + + + + + + + + + + + + A glomerular visceral epithelial cell is a specialized kidney epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells. + epithelial cell of visceral layer of glomerular capsule + BTO:0002295 + glomerular podocyte + podocyte + cell + GO has podocyte as a related synonym due to concern this may refer to more than one cell type. However, this did not turn up in my search. If podocyte does refer to more than one cell type, then we should classify the synonym to 'related'[tfm]. + glomerular visceral epithelial cell + + + + + A glomerular visceral epithelial cell is a specialized kidney epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells. + GOC:tfm + + + + + epithelial cell of visceral layer of glomerular capsule + FMA:70967 + + + + + glomerular podocyte + FMA:70967 + + + + + + + + + + + + + + + + + + + + + + + + + + A primary oocyte is an oocyte that has not completed female meosis I. + BTO:0000512 + FMA:18645 + cell + primary oogonium + primary oocyte + + + + + + true + + + + + A primary oocyte is an oocyte that has not completed female meosis I. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + A secondary oocyte is an oocyte that has not completed meiosis II. + BTO:0003094 + FMA:18646 + cell + primary oogonium + secondary oocyte + + + + + + true + + + + + A secondary oocyte is an oocyte that has not completed meiosis II. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + A diploid cell that has derived from a spermatogonium and can subsequently begin meiosis and divide into two haploid secondary spermatocytes. + BTO:0001115 + CALOHA:TS-2194 + FMA:72292 + cell + primary spermatocyte + + + + + + true + + + + + A diploid cell that has derived from a spermatogonium and can subsequently begin meiosis and divide into two haploid secondary spermatocytes. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + One of the two haploid cells into which a primary spermatocyte divides, and which in turn gives origin to spermatids. + BTO:0000709 + CALOHA:TS-2195 + FBbt:00004941 + FMA:72293 + cell + secondary spermatocyte + + + + + + true + + + + + One of the two haploid cells into which a primary spermatocyte divides, and which in turn gives origin to spermatids. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + An epithelial cell that secretes cuticle. + cell + cuticle secreting cell + + + + + An epithelial cell that secretes cuticle. + GOC:tfm + + + + + + + + + + An extracellular matrix secreting cell that secretes eggshell. + cell + eggshell secreting cell + + + + + An extracellular matrix secreting cell that secretes eggshell. + GOC:tfm + + + + + + + + + An extracellular matrix secreting cell that secretes glycocalyx. + cell + glycocalyx secreting cell + + + + + An extracellular matrix secreting cell that secretes glycocalyx. + GOC:tfm + + + + + + + + + cell + distal tip cell (sensu Nematoda) + + + + + + + + + cell + neuroglioblast (sensu Nematoda) + + + + + + + + + cell + valve cell + + + + + + + + + + cell + closable valve cell + + + + + + + + + cell + permanently open valve cell + + + + + + + + + + window cell + cell + fenestrated cell + + + + + + + + + An extracellular matrix secreting cell that secretes collagen. + cell + collagen secreting cell + + + + + An extracellular matrix secreting cell that secretes collagen. + GOC:tfm + + + + + + + + OBSOLETE: The cell characteristic of an organ, as distinguished from associated connective or supporting tissues. + BTO:0002174 + FMA:84638 + cell + OBSOLETE: Term was made obsolete to avoid confusion with plant parenchymal cell. Cell type has a similar but slightly different meaning in botany (plants): see PO:0000074. + obsolete parenchymal cell + true + + + + + OBSOLETE: The cell characteristic of an organ, as distinguished from associated connective or supporting tissues. + ISBN:0471245208 + + + + + + + + + + + An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitia and muscle layer are missing (thus distingushing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells. + CL:0000184 + BTO:0002441 + FMA:63174 + ARC + adventitial reticular cell + cell of Rouget + pericyte + pericyte of Rouget + cell + adventitial cell + Pericytes are CD10-positive, CD13-positive, CD31-negative, CD45-negative, CD106-positive, CD117-negative, CD140-positive, CD144-negative, CD146-positive, CD271-positive, CD325-positive, NG2-positive, RGS5-positive, SMA-positive, and desmin-positive. A subpopulation is CD248-positive. They are also capable of producing angiopoietin 1, CXCL12, TGF-beta, and VEGF-A. + pericyte cell + + + + + An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitia and muscle layer are missing (thus distingushing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells. + GOC:dsd + GOC:tfm + ISBN:0721662544 + MESH:D020286 + PMID:16807374 + PMID:17986482 + PMID:20024907 + + + + + ARC + PMID:17986482 + + + + + + + + + + + + + + + + + + + + + + + + + A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. + FMA:70567 + gonocyte + primitive germ cell + cell + primordial germ cell + + + + + + true + + + + + + true + + + + + A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. + GOC:tfm + PMID:1381289 + + + + + + + + + FBbt:00004906 + cell + centripetally migrating follicle cell + + + + + + + + Obsolete. Use PO:0000290 from Plant Ontology instead. A water conducting cell, tracheid or vessel member. + cell + replaced_by: PO:0000290 + obsolete tracheary element + true + + + + + Obsolete. Use PO:0000290 from Plant Ontology instead. A water conducting cell, tracheid or vessel member. + ISBN:0471245208 + + + + + + + + + cell + Kenyon cell + + + + + + + + + FBbt:00004910 + fly stalk cell + cell + interfollicle cell + + + + + + + + + + A mature sexual reproductive cell of the female germline. + cell + female gamete + + + + + + true + + + + + A mature sexual reproductive cell of the female germline. + GOC:tfm + + + + + + + + + BTO:0001033 + cell + cap cell + + + + + + + + + Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules. + cell + gut absorptive cell + + + + + Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules. + JB:jb + + + + + + + + + cell + commissural neuron + + + + + + + + + + + + + + + + + + + + WBbt:0006829 + cell + glutamatergic neuron + + + + + + + + + + + + + + + + + + + + + + + + + + + A non-terminally differentiated cell that is capable of developing into a muscle cell. + cell + muscle precursor cell + + + + + A non-terminally differentiated cell that is capable of developing into a muscle cell. + GOC:add + + + + + + + + + + + + + + + A cell present in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration. + forebrain radial glial cell + cell + Unlike that of mammals, the brain of adult teleost fish exhibits an intense and widespread neurogenic activity as a result of the persistence of +radial glial cells acting as neural progenitors throughout life. + radial glial cell + + + + + A cell present in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration. + GOC:dph + + + + + + + + + + + + + + + + + + An absorptive cell of the gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes. + M cell + BTO:0003600 + FMA:62929 + M-cell + microfold cell + cell + Should double check and see if M cells are particular to a specific region. + M cell of gut + + + + + An absorptive cell of the gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes. + GOC:jb + GOC:tfm + + + + + + + + + A cell that transports hormones from neurosecretory cells. This nerve cell is characterized by bipolar shape and endfeet that contact a basal lamina around blood vessels, and/or the pia mater or vitreous body of the eye and additionally contact the ventricular surface or sub-retinal space. + ependymal astrocyte + cell + ependymoglial cell + + + + + A cell that transports hormones from neurosecretory cells. This nerve cell is characterized by bipolar shape and endfeet that contact a basal lamina around blood vessels, and/or the pia mater or vitreous body of the eye and additionally contact the ventricular surface or sub-retinal space. + JB:jb + http://neurolex.org/wiki/Category:Ependymoglial_Cell + + + + + + + + + + + + + + + + cell + littoral cell of liver + + + + + + + + Obsolete. Use PO:0004010 from Plant Ontology instead. A cell synthesizing protoplasm and producing new cells by division and with only a primary cell wall. + cell + replaced_by: PO:0004010 + obsolete meristematic cell + true + + + + + Obsolete. Use PO:0004010 from Plant Ontology instead. A cell synthesizing protoplasm and producing new cells by division and with only a primary cell wall. + PO:0004010 + + + + + + + + + + + + + + + + + + + + + + + + + + + A columnar/cuboidal epithelial cell that secretes cerebrospinal fluid. + cell + cerebrospinal fluid secreting cell + + + + + + true + + + + + A columnar/cuboidal epithelial cell that secretes cerebrospinal fluid. + GOC:tfm + + + + + + + + + + R1 cell + cell + R1 photoreceptor cell + + + + + + + + + + A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina. + cell + perijunctional fibroblast + + + + + A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina. + JB:jb + + + + + + + + + A cell with both myofibrils and secretory granules. + cell + myoendocrine cell + + + + + A cell with both myofibrils and secretory granules. + JB:jb + + + + + + + + + + R2 cell + cell + R2 photoreceptor cell + + + + + + + + + cell + stellate interneuron + + + + + + + + + + A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse. + Schwann cell + cell + terminal Schwann cell + + + + + A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse. + JB:jb + PMID:16136171 + + + + + + + + + A stellate interneuron having 7-10 dendrites that may branch. + spiderweb cell + cell + neuroglioform cell + + + + + A stellate interneuron having 7-10 dendrites that may branch. + JB:jb + + + + + + + + + + R3 cell + cell + R3 photoreceptor cell + + + + + + + + + One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene. + cell + Cajal-Retzius cell + + + + + One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene. + PMID:10600995 + PMID:9728912 + + + + + + + + + + A cell that stores and secretes pancreatic polypeptide hormone. + FMA:62938 + FMA:83409 + type F enteroendocrine cell + cell + PP cell + + + + + A cell that stores and secretes pancreatic polypeptide hormone. + GOC:tfm + JB:jb + PMID:15153415 + + + + + + + + + + R4 cell + cell + R4 photoreceptor cell + + + + + + + + cell + obsolete paraganglial cell + true + + + + + + + + + A type of glomus or chief cell, is sensitive to hypoxia and produce catecholamines. + cell + paraganglial type 1 cell + + + + + A type of glomus or chief cell, is sensitive to hypoxia and produce catecholamines. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A neuron that releases dopamine as a neurotransmitter. + BTO:0004032 + FMA:84787 + WBbt:0006746 + dopaminergic cell + cell + dopaminergic neuron + + + + + A neuron that releases dopamine as a neurotransmitter. + GOC:dhill + + + + + + + + + Supports paraganglial type 1 cell. + cell + paraganglia type 2 cell + + + + + Supports paraganglial type 1 cell. + JB:jb + + + + + + + + + + R5 cell + cell + R5 photoreceptor cell + + + + + + + + + Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors. + BTO:0002315 + cell + sustentacular cell + + + + + Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors. + JB:jb + + + + + + + + + A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels. + cell + endothelial tip cell + + + + + A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels. + PMID:15376331 + + + + + + + + + + R6 cell + cell + R6 photoreceptor cell + + + + + + + + + + + + + + + + + + + + Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord. + CL:1000430 + FMA:70549 + epithelial cell of choroid plexus + cell + choroid plexus epithelial cell + + + + + Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord. + GOC:add + GOC:tfm + JB:jb + PMID:9550134 + + + + + + + + + + R7 cell + cell + R7 photoreceptor cell + + + + + + + + + + + + + + + + + + + + + Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus. + cell + leptomemingeal cell + leptomeningeal cell + + + + + + true + + + + + + true + + + + + Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus. + JB:jb + + + + + + + + + + R8 cell + cell + R8 photoreceptor cell + + + + + + + + + + + + + + + + + + + + Epithelial cells derived from neural plate and neural crest. + neuroepithelial cell + BTO:0004301 + FMA:70557 + cell + The term "neuroepithelial cell" is used to describe both this cell type and sensory epithelial cell (CL:0000098). + neurecto-epithelial cell + + + + + Epithelial cells derived from neural plate and neural crest. + GOC:tfm + + + + + + + + + + + + + + + + Cumulus cell is a specialized granulosa cell that surrounds and nourishes the oocyte. This cell-type surrounds the fully-grown oocyte to form a cumulus-oocyte complex (abbr. COC). The terms cumulus oophorus cells, cumulus granulosa cells, cumulus oophorous granulosa cells, granulosa-cumulus cells are used to make a distinction between this cell and the other functionally different subpopulation of granulosa cells at the wall of the Graafian follicle. + BTO:0002236 + cell + cumulus cell + + + + + Cumulus cell is a specialized granulosa cell that surrounds and nourishes the oocyte. This cell-type surrounds the fully-grown oocyte to form a cumulus-oocyte complex (abbr. COC). The terms cumulus oophorus cells, cumulus granulosa cells, cumulus oophorous granulosa cells, granulosa-cumulus cells are used to make a distinction between this cell and the other functionally different subpopulation of granulosa cells at the wall of the Graafian follicle. + GOC:tfm + http://www.copewithcytokines.org/cope.cgi?key=cumulus%20cells + + + + + + + + + + + + + + + + + + + + + + + + + + cell + stratum granulosum cell + + + + + + + + + cell + corona radiata cell + + + + + + + + + + cell + embryonic crystal cell + + + + + + + + + + cell + lymph gland crystal cell + + + + + + + + + A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons. + cell + fusimotor neuron + + + + + A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons. + PMID:15582775 + + + + + + + + + + + + + + + cell + cone cell (sensu Endopterygota) + compound eye cone cell + + + + + + + + + cell + posterior cone cell (sensu Endopterygota) + + + + + + + + + cell + anterior cone cell (sensu Endopterygota) + + + + + + + + + cell + equatorial cone cell (sensu Endopterygota) + + + + + + + + + cell + cystoblast + + + + + + + + + + + + + + + + + + + + + A stem cell that can give rise to cell types of the body other than those of the germ-line. + CALOHA:TS-2086 + FMA:63368 + cell + somatic stem cell + + + + + + true + + + + + A stem cell that can give rise to cell types of the body other than those of the germ-line. + GO:0048103 + + + + + + + + + + A differentiated cell that functions as a site of nitrogen fixation under aerobic conditions. + BTO:0000600 + cell + heterocyst + + + + + A differentiated cell that functions as a site of nitrogen fixation under aerobic conditions. + MA:ma + + + + + + + + + + + + + + + + + + + + cell + nitrogen fixing cell + + + + + + + + + An asexual 1-celled spore (primarily for perennation, not dissemination). Originates endogenously and singly within part of a pre-existing cell by the contraction of the protoplast. Possesses an inner secondary and often thickened hyaline or brown wall, usually impregnated with hydrophobic material. + cell + Considering obsoleting as sometimes used to refer to protozoans too. But reference indicates term was intended for fungus. + chlamydospore + + + + + An asexual 1-celled spore (primarily for perennation, not dissemination). Originates endogenously and singly within part of a pre-existing cell by the contraction of the protoplast. Possesses an inner secondary and often thickened hyaline or brown wall, usually impregnated with hydrophobic material. + GOC:tfm + ISBN:085199377X + + + + + + + + + cell + primary pigment cell + + + + + + + + + cell + secondary pigment cell + + + + + + + + + cell + tertiary pigment cell + + + + + + + + + + A cell at the front of a migrating epithelial sheet. + cell + leading edge cell + + + + + A cell at the front of a migrating epithelial sheet. + MA:ma + + + + + + + + + + + + + + + + + + + + + A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria. + FMA:84127 + bladder transitional cell + transitional epithelial cell of urinary bladder + urinary tract transitional epithelial cell + cell + urothelial cell + + + + + + true + + + + + + true + + + + + A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria. + GOC:tfm + MA:ma + + + + + + + + + cell + amoeboid cell + + + + + + + + + + cell + lymph gland plasmatocyte + + + + + + + + + + cell + embryonic gland plasmatocyte + + + + + + + + + cell + lymph gland hemocyte + + + + + + + + + cell + embryonic gland hemocyte + + + + + + + + + + + + + + + + + + + + + + + + + Muscle cell which has as its direct parts myofilaments organized into sarcomeres. + BTO:0002916 + CALOHA:TS-2157 + FMA:86936 + cell + striated muscle cell + + + + + Muscle cell which has as its direct parts myofilaments organized into sarcomeres. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue. + BTO:0000751 + CALOHA:TS-0549 + FMA:62852 + immune cell + leucocyte + white blood cell + cell + leukocyte + + + + + + true + + + + + An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue. + GOC:add + GOC:tfm + ISBN:978-0-323-05290-0 + + + + + + + + + + + + + + + The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve. + BTO:0001800 + FMA:67765 + RGC + gangliocyte + ganglion cell of retina + cell + retinal ganglion cell + + + + + The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve. + GOC:dph + + + + + + + + + A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord. + SACMN + cell + spinal accessory motor neuron + + + + + A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord. + PMID:16267219 + + + + + + + + + + + + + + + A round chondrocyte that first differentiates in the late embryonic growth plate of bone. + cell + periarticular chondrocyte + + + + + + true + + + + + A round chondrocyte that first differentiates in the late embryonic growth plate of bone. + PMID:15951842 + + + + + + + + + Chondrocyte that is terminally differentiated, produces type X collagen, is large in size, and often associated with the replacement of cartilage by bone (endochondral ossification). + cell + is hypertrophic pathological or normal? and can it be described using a pato term? + hypertrophic chondrocyte + + + + + Chondrocyte that is terminally differentiated, produces type X collagen, is large in size, and often associated with the replacement of cartilage by bone (endochondral ossification). + GO_REF:0000034 + PMID:15951842 + + + + + + + + + A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate. + cell + columnar chondrocyte + + + + + A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate. + PMID:15951842 + + + + + + + + + + + + + + + A neuron that laterally connects other neurons in the inner nuclear layer of the retina. + BTO:0004120 + horizontal cell + cell + retina horizontal cell + + + + + A neuron that laterally connects other neurons in the inner nuclear layer of the retina. + ISBN:0195088433 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. + FMA:83808 + cardiocyte + BTO:0001539 + CALOHA:TS-0115 + FMA:14067 + cardiac muscle fiber + cardiac myocyte + cardiomyocyte + heart muscle cell + cell + This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. + cardiac muscle cell + + + + + Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. + GOC:mtg_cardiacconduct_nov11 + GOC:tfm + ISBN:0323052908 + PMID:22426062 + PMID:4711263 + + + + + cardiac muscle fiber + GO:0048739 + + + + + + + + + + + + + + + A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance. + cell + blue chromatophore + cyanophore + + + + + A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance. + SANBI:mhl + + + + + + + + + + + + + + + + + + + A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. + cell + retinal bipolar neuron + + + + + A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. + PMID:14689473 + + + + + + + + + A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors. + cell + ON-bipolar cell + + + + + A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors. + PMID:14689473 + + + + + + + + + A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors. + cell + OFF-bipolar cell + + + + + A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors. + PMID:14689473 + + + + + + + + + + A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer. + FMA:67750 + cell + rod bipolar cell + + + + + A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer. + GOC:tfm + PMID:14689473 + + + + + + + + + A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer. + cell + cone retinal bipolar cell + + + + + A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer. + PMID:14689473 + + + + + + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell body of these cells is in the middle of the inner plexiform layer. The dendritic tree is stout and the axon terminates in sublamina 1. The axonal terminal is wide and has only a few varicosities. + DB1 cone bipolar cell + cell + type 1 cone bipolar cell (sensu Mus) + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell body of these cells is in the middle of the inner plexiform layer. The dendritic tree is stout and the axon terminates in sublamina 1. The axonal terminal is wide and has only a few varicosities. + PMID:14689473 + + + + + + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is not well filled and the dendrites are more delicate than in type 1 cells. The axon terminal is bushier and exhibits a dense plexus of varicosities in the inner part of sublamina 1. + FMB cone bipolar cell + cell + type 2 cone bipolar cell (sensu Mus) + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is not well filled and the dendrites are more delicate than in type 1 cells. The axon terminal is bushier and exhibits a dense plexus of varicosities in the inner part of sublamina 1. + PMID:14689473 + + + + + + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is delicate and the dendritic tips appear small when compared with type 1 cells. The axon terminal is stratified and restricted to sublamina 2 of the inner plexiform layer. + DB2 cone bipolar cell + cell + type 3 cone bipolar cell (sensu Mus) + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is delicate and the dendritic tips appear small when compared with type 1 cells. The axon terminal is stratified and restricted to sublamina 2 of the inner plexiform layer. + PMID:14689473 + + + + + + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell has a diffuse axon terminal with varicosities in sublaminae 1 and 2 of the inner plexiform layer. + DB3 cone bipolar cell + cell + type 4 cone bipolar cell (sensu Mus) + + + + + An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell has a diffuse axon terminal with varicosities in sublaminae 1 and 2 of the inner plexiform layer. + PMID:14689473 + + + + + + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is restricted to sublamina 3 of the inner plexiform layer. It is narrowly stratified and branched. The dendritic tree has many delicate branches. + DB4 cone bipolar cell + cell + type 5 cone bipolar cell (sensu Mus) + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is restricted to sublamina 3 of the inner plexiform layer. It is narrowly stratified and branched. The dendritic tree has many delicate branches. + PMID:14689473 + + + + + + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The cell has a loose, delicate axon terminal that opens in sublamina 3 of the inner plexiform layer and descends into sublamina 4. + DB5 cone bipolar cell + cell + type 6 cone bipolar cell (sensu Mus) + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The cell has a loose, delicate axon terminal that opens in sublamina 3 of the inner plexiform layer and descends into sublamina 4. + PMID:14689473 + + + + + + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is narrowly stratified and are found just below a calretinin-expressing band in sublamina 4 of the inner plexiform layer. + IMB cone bipolar cell + cell + type 7 cone bipolar cell (sensu Mus) + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is narrowly stratified and are found just below a calretinin-expressing band in sublamina 4 of the inner plexiform layer. + PMID:14689473 + + + + + + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. This cell has the widest dendritic field and the widest axon terminal of all retinal bipolar cells. The axon terminal is delicate and stratified through sublaminae 4 and 5 of the inner plexiform layer. + DB6 cone bipolar cell + cell + type 8 cone bipolar cell (sensu Mus) + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. This cell has the widest dendritic field and the widest axon terminal of all retinal bipolar cells. The axon terminal is delicate and stratified through sublaminae 4 and 5 of the inner plexiform layer. + PMID:14689473 + + + + + + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The dendritic tree is wide and the dendritic convergence indicates cone selectivity. The axon terminal is sparsely branched and terminates in sublamina 5 of the inner plexiform layer. + BB cone bipolar cell + cell + type 9 cone bipolar cell (sensu Mus) + + + + + An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The dendritic tree is wide and the dendritic convergence indicates cone selectivity. The axon terminal is sparsely branched and terminates in sublamina 5 of the inner plexiform layer. + PMID:14689473 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates. + cell + Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals. + nucleated thrombocyte + + + + + + true + + + + + A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates. + GOC:add + GOC:tfm + PMID:16360205 + + + + + + + + + + + + + + + + + + + + A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. + BTO:0001441 + CALOHA:TS-0647 + cell + myeloid cell + + + + + + true + + + + + A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. + GOC:add + + + + + + + + + A immature or mature cell in the lineage leading to and including erythrocytes. + CL:0002156 + CALOHA:TS-0290 + FMA:62845 + FMA:83516 + erythropoietic cell + cell + Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes. + erythroid lineage cell + + + + + A immature or mature cell in the lineage leading to and including erythrocytes. + GOC:add + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers. + BTO:0001571 + CALOHA:TS-0289 + FMA:83504 + normoblast + cell + erythroblast + + + + + + true + + + + + A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers. + GOC:add + ISBN:0721601464 + PMID:18174176 + + + + + + + + + + + + + + + + + + + + A cell of the monocyte, granulocyte, or mast cell lineage. + cell + myeloid leukocyte + + + + + + true + + + + + A cell of the monocyte, granulocyte, or mast cell lineage. + GOC:add + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any of the immature or mature forms of a granular leukocyte that in its mature form has an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse, bluish-black granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. A basophil is CD123-positive, CD193-positive, CD203c-positive, and FceRIa-positive. + polymorphonuclear leucocyte + polymorphonuclear leukocyte + BTO:0000129 + CALOHA:TS-0073 + FMA:62862 + basophilic leucocyte + basophilic leukocyte + cell + Matures in the bone marrow and account for <1% of leukocytes in the peripheral blood, spleen, and bone marrow. Basophils are described as being CD11a-positive, CD11b-positive, CD13-positive, CD15-positive, CD18-positive, CD21-positive, CD25-positive, CD29-positive, CD35-positive, CD40-positive, CD40L-positive, CD44-positive, CD45R-negative, CD46-positive, CD49a-positive, CD49b-positive, CD49d-positive, CD55-positive, CD59-positive, CD62L-positive, CD63-positive, CD69-positive, CD90-negative, CD116-positive, CD117-negative, CD124-positive, CD125-positive, CD131-positive, CD161-positive, CD184-positive, CD191-positive, CD192-positive, CD197-positive, CD200R3-positive, CD218-positive, CD282-positive, CD284-positive, CD289-positive, CD290-positive, CD294-positive, natural killer cell receptor 2B4-positive, smad1-positive, CD3-negative, CD4-negative, CD7-negative, CD8-negative, CD14-negative, CD15-negative, CD16-negative, CD19-negative, CD20-negative, CD34-negative, CD36-negative, CD45R-negative, CD56-negative, CD57-negative, CD235a-negative, and GR1-negative. Transcription factors- GATA1-positive, PU.1-positive. + basophil + + + + + + true + + + + + Any of the immature or mature forms of a granular leukocyte that in its mature form has an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse, bluish-black granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. A basophil is CD123-positive, CD193-positive, CD203c-positive, and FceRIa-positive. + GOC:add + GOC:amm + GOC:dsd + GOC:tfm + ISBN:0721601464 + MESH:D001491 + PMCID:PMC2626675 + PMID:11927641 + PMID:19741522 + PMID:21236338 + PMID:9933081 + + + + + + + + + + + + + + + + + + + + + + + + + + Any of the immature forms of a basophil, in which basophilic specific granules are present but other phenotypic features of the mature form may be lacking. + immature basophilic leucocyte + immature basophilic leukocyte + cell + immature basophil + + + + + + true + + + + + Any of the immature forms of a basophil, in which basophilic specific granules are present but other phenotypic features of the mature form may be lacking. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A basophil precursor in the granulocytic series, being a cell intermediate in development between a basophilic myelocyte and a band form basophil. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. Markers are CD11b-positive, CD15-positive, CD16-positive, CD24-positive, CD33-positive, and CD13-positive. + FMA:84198 + cell + basophilic metamyelocyte + + + + + + true + + + + + A basophil precursor in the granulocytic series, being a cell intermediate in development between a basophilic myelocyte and a band form basophil. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. Markers are CD11b-positive, CD15-positive, CD16-positive, CD24-positive, CD33-positive, and CD13-positive. + GOC:tfm + ISBN:0721601464 + PMID:18466030 + + + + + + + + + + + + + + + + + + + + + + + + + + A late basophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil. + cell + band form basophil + + + + + + true + + + + + A late basophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil. + GOC:add + ISBN:0721601464 + PMID:18466030 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Eosinophils are CD9-positive, CD191-positive, and CD193-positive. + polymorphonuclear leucocyte + polymorphonuclear leukocyte + BTO:0000399 + CALOHA:TS-0279 + FMA:62861 + eosinocyte + eosinophilic granulocyte + eosinophilic leucocyte + eosinophilic leukocyte + cell + Eosinophils are also CD14-negative, CD32-positive, CD44-positive, CD48-positive, CD69-positive, CD192-negative, MBP1-positive, MBP2-positive, TLR2-negative, TLR4-negative, and lineage-negative (B220, CD2, CD14, CD19, CD56, CD71, CD117, CD123, CD235a (glycophorin A), and TER119). The cytokines IL-3, IL-5, and GM-CSF are involved in their development and differentiation. Usually considered CD16-negative, CD16 is observed on eosinophilic metamyelocyte. + eosinophil + + + + + + true + + + + + Any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Eosinophils are CD9-positive, CD191-positive, and CD193-positive. + GOC:add + GOC:amm + GOC:dsd + GOC:tfm + ISBN:0721601464 + PMCID:PMC2626675 + PMID:10914487 + PMID:1662676 + + + + + + + + + + + + + + + + + + + + + + + + + + Any of the immature forms of an eosinophil, in which eosinophilic specific granules are present but other phenotypic features of the mature form may be lacking. + immature eosinocyte + immature eosinophilic leucocyte + immature eosinophilic leukocyte + cell + immature eosinophil + + + + + + true + + + + + Any of the immature forms of an eosinophil, in which eosinophilic specific granules are present but other phenotypic features of the mature form may be lacking. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a eosinophilic myelocyte and a band form eosinophil. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. Markers are integrin alpha-M-positive, fucosyltransferase FUT4-positive, low affinity immunoglobulin gamma Fc region receptor III-positive, CD33-positive, CD24-positive and aminopeptidase N-negative. + cell + eosinophilic metamyelocyte + + + + + + true + + + + + A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a eosinophilic myelocyte and a band form eosinophil. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. Markers are integrin alpha-M-positive, fucosyltransferase FUT4-positive, low affinity immunoglobulin gamma Fc region receptor III-positive, CD33-positive, CD24-positive and aminopeptidase N-negative. + GOC:add + GOC:tfm + ISBN:0721601464 + PMID:19622087 + + + + + + + + + + + + + + + + + + + + + + + + + + A late eosinophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil. + cell + band form eosinophil + + + + + + true + + + + + A late eosinophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil. + GOC:add + GOC:tfm + ISBN:0721601464 + PMID:19622087 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. + PMN + poly + polymorphonuclear leucocyte + polymorphonuclear leukocyte + polymorphonuclear neutrophil + polynuclear neutrophilic leucocyte + polynuclear neutrophilic leukocyte + BTO:0000130 + CALOHA:TS-0688 + FMA:62860 + neutrocyte + neutrophil leucocyte + neutrophil leukocyte + neutrophilic leucocyte + neutrophilic leukocyte + cell + neutrophil + + + + + + true + + + + + Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. + GOC:add + GOC:amm + GOC:tfm + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. + immatuer neutrophilic leukocyte + immature neutrocyte + immature neutrophil leucocyte + immature neutrophil leukocyte + immature neutrophilic leucocyte + cell + immature neutrophil + + + + + + true + + + + + Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage of the renal glomerular mesangium involved in the disposal and degradation of filtration residues, presentation of antigen to T cells and in tissue remodeling. + mesangial cell + cell + mesangial phagocyte + + + + + + true + + + + + A tissue-resident macrophage of the renal glomerular mesangium involved in the disposal and degradation of filtration residues, presentation of antigen to T cells and in tissue remodeling. + GOC:add + GOC:tfm + ISBN:0702022918 + ISBN:3540536663 + PMID:1600140 + PMID:16146841 + + + + + + + + + + + + + + + + + + + + A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts. + cell + Morphology: mononuclear, highly vesicular. + mononuclear osteoclast + + + + + + true + + + + + A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts. + GOC:add + GOC:tfm + PMID:12713016 + PMID:15055519 + PMID:17380158 + PMID:9415452 + + + + + + + + + + + + + + + + + + + + + + + + + + A specialized multinuclear osteoclast associated with the absorption and removal of bone. + multinucleated osteoclast + cell + Morphology: multinucleated, highly vesicular. + multinuclear osteoclast + + + + + + true + + + + + A specialized multinuclear osteoclast associated with the absorption and removal of bone. + GOC:add + PMID:12713016 + PMID:9415452 + + + + + + + + + + + + + + + + + + + + + + + + + + A specialized multinuclear osteoclast associated with the absorption and removal of cementum. + multinucleated odontoclast + cell + Morphology: multinucleated, highly vesicular; location: roots of deciduous (milk) teeth. + multinuclear odontoclast + + + + + + true + + + + + A specialized multinuclear osteoclast associated with the absorption and removal of cementum. + GOC:add + PMID:9415452 + + + + + + + + + + + + + + + + + + + + + A specialized mononuclear osteoclast associated with the absorption and removal of cementum. + cell + Morphology: Mononuclear, highly vesicular; location: roots of deciduous (milk) teeth. + mononuclear odontoclast + + + + + + true + + + + + + true + + + + + A specialized mononuclear osteoclast associated with the absorption and removal of cementum. + GOC:add + PMID:9415452 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A dendritic cell of the myeloid lineage. + interdigitating cell + veiled cell + BTO:0004721 + CD11c+CD123- DC + mDC + cell + These cells are CD1a-negative, CD1b-positive, CD11a-positive, CD11c-positive, CD13-positive, CD14-negative, CD20-negative, CD21-negative, CD33-positive, CD40-negative, CD50-positive, CD54-positive, CD58-positive, CD68-negative, CD80-negative, CD83-negative, CD85j-positive, CD86-positive, CD89-negative, CD95-positive, CD120a-negative, CD120b-positive, CD123-negative, CD178-negative, CD206-negative, CD207-negative, CD209-negative, and TNF-alpha-negative. Upon TLR stimulation, they are capable of producing high levels of TNF-alpha, IL-6, CXCL8 (IL-8). + myeloid dendritic cell + + + + + + true + + + + + A dendritic cell of the myeloid lineage. + GOC:add + PMID:10449155 + PMID:17332250 + PMID:9521319 + + + + + + + + + + + + + + + + + + + + A phagocyte formed by the fusion of mononuclear phagocytes. + cell + multinucleated phagocyte + + + + + + true + + + + + A phagocyte formed by the fusion of mononuclear phagocytes. + GOC:add + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection. + BTO:0004625 + DC2 + IPC + T-associated plasma cell + interferon-producing cell + lymphoid dendritic cell + pDC + plasmacytoid T cell + plasmacytoid monocyte + type 2 DC + cell + plasmacytoid dendritic cell + + + + + + true + + + + + A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection. + GOC:add + GOC:dsd + PMCID:PMC2118448 + PMCID:PMC538703 + PMID:15549123 + PMID:17332250 + PMID:17850486 + PMID:20304825 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen. + mature B lymphocyte + mature B-cell + mature B-lymphocyte + cell + Mature B cells are also reportedly CD10-negative, CD19-positive, CD22-positive, CD34-negative, CD48-positive, CD79a-positive, CD84-positive, CD127-negative, CD352-positive, RAG-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Transcription factors expressed: Pax5-positive. + mature B cell + + + + + + true + + + + + A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen. + GOC:add + GOC:dsd + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin. + BTO:0000392 + FMA:70574 + plasma B cell + plasma B-cell + plasmacyte + plasmocyte + cell + effector B cell + effector B-cell + Plasma cells develop in the spleen and migrate to the bone marrow. Plasma cells are also reportedly CD5-negative, CD10-negative, CD19-positive, CD20-negative, CD21-negative, CD22-negative, CD23-negative, CD24-negative, CD25-negative, CD27-positive, CD34-negative, CD38-positive, CD40-positive, CD43-positive, CD45-positive, CD48-positive, CD53-low, CD80-negative, CD81-positive, CD86-positive, CD95-positive, CD196-negative, CD229-positive, CD270-positive, CD352-positive, CD361-positive, and IgD-negative. Transcription factors: BLIMP1-positive, IRF4-positive, PAX5-negative, SpiB-negative, Ets1-negative, and XBP1-positive. + plasma cell + + + + + + true + + + + + A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin. + GOC:add + GOC:dsd + GO_REF:0000031 + ISBN:0721601464 + ISBN:0781735149 + PMID:19447676 + PMID:20081059 + PMID:20839338 + PMID:20951740 + http://en.wikipedia.org/wiki/Plasma_cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative. + memory B lymphocyte + memory B-cell + memory B-lymphocyte + cell + Memory B-cells are also reportedly CD5-negative, CD10-negative, CD21-positive, CD22-positive, CD23-negative, CD24-positive, CD25-positive, CD27-positive, CD34-negative, CD38-negative, CD40-positive, CD43-negative, CD44-positive, CD45-positive, CD53-positive, CD80-negative, CD81-negative, CD86-positive, and CD196/CCR6-positive. + memory B cell + + + + + + true + + + + + A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative. + GOC:add + GOC:dsd + GOC:rhs + GO_REF:0000031 + ISBN:0781735149 + PMID:20081059 + PMID:20839338 + http://en.wikipedia.org/wiki/Memory_B_cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD20-positive, CD27-negative and that has not yet been activated by antigen in the periphery. + naive B lymphocyte + naive B-cell + naive B-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'naive B cell'. Per DSD: Naive B cells are also reportedly CD10-negative, CD19-positive, CD20-positive, CD21-positive, CD22-positive, CD25-negative, CD27-negative, CD34-negative, CD40-positive, CD43-negative, CD45-positive, CD48-positive, CD53-positive, CD80-negative, CD81-positive, CD84-positive, CD86-negative, CD95-negative, CD138-negative, CD150-positive, CD184/CXCR4-positive, CD185/CXCR5-positive, CD196/CCR6-positive, CD200-positive, CD229-positive, CD243-positive, CD289-positive, CD290-positive, CD352-positive, MHCII/HLA-DR-positive, cadherin 9-positive, and sIgH-positive, Transcription factors: Pax5-positive, ETS1-positive, FOXO1A-positive, KLF4-positive, KLF9-positive, MiTF-positive, OBF1-positive, PLZF-positive, and SpiB-positive. + naive B cell + + + + + + true + + + + + A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD20-positive, CD27-negative and that has not yet been activated by antigen in the periphery. + GOC:add + GOC:dsd + GOC:rhs + GO_REF:0000031 + ISBN:0781765196 + PMID:19447676 + PMID:20081059 + PMID:20839338 + PMID:20933013 + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + A T cell that expresses an alpha-beta T cell receptor complex. + alpha-beta T lymphocyte + alpha-beta T-cell + alpha-beta T-lymphocyte + cell + alpha-beta T cell + + + + + + true + + + + + A T cell that expresses an alpha-beta T cell receptor complex. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + An alpha-beta T cell that has an immature phenotype and has not completed T cell selection. + immature alpha-beta T lymphocyte + immature alpha-beta T-cell + immature alpha-beta T-lymphocyte + cell + immature alpha-beta T cell + + + + + + true + + + + + An alpha-beta T cell that has an immature phenotype and has not completed T cell selection. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + A alpha-beta T cell that has a mature phenotype. + mature alpha-beta T lymphocyte + mature alpha-beta T-cell + mature alpha-beta T-lymphocyte + cell + mature alpha-beta T cell + + + + + + true + + + + + A alpha-beta T cell that has a mature phenotype. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, CD25-positive, alpha-beta T cell that regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release. + Treg + suppressor T cell + suppressor T lymphocyte + suppressor T-cell + suppressor T-lymphocyte + CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte + CD4-positive, CD25-positive, alpha-beta regulatory T-cell + CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'Treg'. The inclusion of CD127lo in the logical definition is compatible with both human and mouse T cells of this subtype. + CD4-positive, CD25-positive, alpha-beta regulatory T cell + + + + + + true + + + + + A CD4-positive, CD25-positive, alpha-beta T cell that regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release. + GOC:add + GOC:tfm + ISBN:0781735149 + PMID:19464985 + PMID:22343568 + + + + + Treg + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell that is found in the columnar epithelium of the gastrointestinal tract. + IEL + intraepithelial lymphocyte + CD4-positive, alpha-beta intraepithelial T lymphocyte + CD4-positive, alpha-beta intraepithelial T-cell + CD4-positive, alpha-beta intraepithelial T-lymphocyte + cell + CD4-positive, alpha-beta intraepithelial T cell + + + + + + true + + + + + A CD4-positive, alpha-beta T cell that is found in the columnar epithelium of the gastrointestinal tract. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell that is capable of killing target cells in an antigen specific manner with the phenotype perforin-positive and granzyme B-positive. + cytotoxic T cell + cytotoxic T lymphocyte + cytotoxic T-cell + cytotoxic T-lymphocyte + killer T cell + killer T lymphocyte + killer T-cell + killer T-lymphocyte + CALOHA:TS-0190 + FMA:70573 + CD8-positive, alpha-beta cytotoxic T lymphocyte + CD8-positive, alpha-beta cytotoxic T-cell + CD8-positive, alpha-beta cytotoxic T-lymphocyte + cell + Note that while T cells of this subset are loosely referred to 'cytotoxic T cells,' as many other T cell types, including CD4-positive, alpha-beta T cells and gamma-delta T cells exhibit cytotoxicity in vitro and in vivo. + CD8-positive, alpha-beta cytotoxic T cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell that is capable of killing target cells in an antigen specific manner with the phenotype perforin-positive and granzyme B-positive. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell that regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release. + suppressor T cell + suppressor T lymphocyte + suppressor T-cell + suppressor T-lymphocyte + CD8+ T(reg) + CD8+ Treg + CD8+ regulatory T cell + CD8-positive T(reg) + CD8-positive Treg + CD8-positive, alpha-beta Treg + CD8-positive, alpha-beta regulatory T lymphocyte + CD8-positive, alpha-beta regulatory T-cell + CD8-positive, alpha-beta regulatory T-lymphocyte + cell + CD8-positive, alpha-beta regulatory T cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell that regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A alpha-beta intraepithelial T cell found in the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements. + IEL + intraepithelial lymphocyte + CD8-positive, alpha-beta intraepithelial T lymphocyte + CD8-positive, alpha-beta intraepithelial T-cell + CD8-positive, alpha-beta intraepithelial T-lymphocyte + cell + CD8-alpha-beta-positive, alpha-beta intraepithelial T cell + + + + + + true + + + + + A alpha-beta intraepithelial T cell found in the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements. + GOC:add + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + A mature alpha-beta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements. + IEL + intraepithelial lymphocyte + alpha-beta intraepithelial T lymphocyte + alpha-beta intraepithelial T-cell + alpha-beta intraepithelial T-lymphocyte + cell + alpha-beta intraepithelial T cell + + + + + + true + + + + + A mature alpha-beta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A T cell that expresses a gamma-delta T cell receptor complex. + gamma-delta T lymphocyte + gamma-delta T-cell + gamma-delta T-lymphocyte + gammadelta T cell + cell + gd T cell + Note that gamma-delta T cells have both thymic and extrathymic differentiation pathways. + gamma-delta T cell + + + + + + true + + + + + A T cell that expresses a gamma-delta T cell receptor complex. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A gamma-delta T cell that has an immature phenotype. + immature gamma-delta T lymphocyte + immature gamma-delta T-cell + immature gamma-delta T-lymphocyte + cell + Note that gamma-delta T cells have both thymic and extrathymic differentiation pathways. + immature gamma-delta T cell + + + + + + true + + + + + A gamma-delta T cell that has an immature phenotype. + GOC:add + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location. + mature gamma-delta T lymphocyte + mature gamma-delta T-cell + mature gamma-delta T-lymphocyte + cell + mature gamma-delta T cell + + + + + + true + + + + + A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + A mature gamma-delta T cell that is found in the columnar epithelium of the gastrointestinal tract. These cells participate in mucosal immune responses. + IEL + intraepithelial lymphocyte + gamma-delta intraepithelial T lymphocyte + gamma-delta intraepithelial T-cell + gamma-delta intraepithelial T-lymphocyte + cell + gamma-delta intraepithelial T cell + + + + + + true + + + + + A mature gamma-delta T cell that is found in the columnar epithelium of the gastrointestinal tract. These cells participate in mucosal immune responses. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A gamma-delta intraepithelial T cell that has the phenotype CD8-alpha alpha-positive. + IEL + intraepithelial lymphocyte + CD8-positive, gamma-delta intraepithelial T lymphocyte + CD8-positive, gamma-delta intraepithelial T-cell + CD8-positive, gamma-delta intraepithelial T-lymphocyte + cell + CD8-alpha alpha positive, gamma-delta intraepithelial T cell + + + + + + true + + + + + A gamma-delta intraepithelial T cell that has the phenotype CD8-alpha alpha-positive. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + A gamma-delta intraepithelial T cell that has the phenotype CD4-negative and CD8-negative. + IEL + intraepithelial lymphocyte + CD4-positive, gamma-delta intraepithelial T lymphocyte + CD4-positive, gamma-delta intraepithelial T-cell + CD4-positive, gamma-delta intraepithelial T-lymphocyte + cell + CD4-negative CD8-negative gamma-delta intraepithelial T cell + + + + + + true + + + + + A gamma-delta intraepithelial T cell that has the phenotype CD4-negative and CD8-negative. + GOC:add + GOC:tfm + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A thymocyte that has the phenotype CD4-negative, CD8-positive, CD44-negative, CD25-negative, and pre-TCR-positive. + ISP + T.ISP.th + immature single positive T cell + immature single positive T lymphocyte + immature single positive T-lymphocyte + cell + Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and rearranging the T cell receptor alpha chain and expressing the CD8 coreceptor. This stage comes between the DN4 and DP stages. + immature single positive thymocyte + + + + + + true + + + + + A thymocyte that has the phenotype CD4-negative, CD8-positive, CD44-negative, CD25-negative, and pre-TCR-positive. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-positive. + DN2 alpha-beta immature T lymphocyte + DN2 alpha-beta immature T-cell + DN2 alpha-beta immature T-lymphocyte + DN2 cell + DN2 immature T cell + TN2 cell + TN2 thymocyte + double negative 2 + preT.DN2.Th + cell + Note that this type of thymocyte is at the earliest stage of T cell receptor rearrangement of the beta, gamma, and delta T cell receptor chains. + DN2 thymocyte + + + + + + true + + + + + A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-positive. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain. + early cortical thymocyte + DN3 alpha-beta immature T lymphocyte + DN3 alpha-beta immature T-cell + DN3 alpha-beta immature T-lymphocyte + DN3 cell + DN3 immature T cell + TN3 cell + TN3 thymocyte + double negative 3 + preT.DN3.Th + cell + DN3 thymocyte + + + + + + true + + + + + A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive. + early cortical thymocyte + DN4 alpha-beta immature T lymphocyte + DN4 alpha-beta immature T-lymphocyte + DN4 cell + DN4 immature T cell + DN4 immature T-cell + T.DN4.th + double negative 4 + cell + Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. + DN4 thymocyte + + + + + + true + + + + + A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors. + late cortical thymocyte + DP cell + DP thymocyte + double-positive, alpha-beta immature T lymphocyte + cell + Thymocytes of this stage are undergoing positive and negative selection. + double-positive, alpha-beta thymocyte + + + + + + true + + + + + A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative. + CD4-positive, alpha-beta immature T lymphocyte + CD4-positive, alpha-beta immature T-cell + CD4-positive, alpha-beta immature T-lymphocyte + SP CD4 cell + cell + CD4-positive, alpha-beta thymocyte + + + + + + true + + + + + An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature alpha-beta T cell that is located in the thymus and is CD8-positive and CD4-negative. + CD8-positive, alpha-beta immature T lymphocyte + CD8-positive, alpha-beta immature T-cell + CD8-positive, alpha-beta immature T-lymphocyte + SP CD8 cell + cell + CD8-positive, alpha-beta immature T cell + CD8-positive, alpha-beta thymocyte + + + + + + true + + + + + An immature alpha-beta T cell that is located in the thymus and is CD8-positive and CD4-negative. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive. + BTO:0003435 + memory T lymphocyte + memory T-cell + memory T-lymphocyte + cell + memory T cell + + + + + + true + + + + + A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature alpha-beta T cell of a distinct lineage that bears natural killer markers and a T cell receptor specific for a limited set of ligands. NK T cells have activation and regulatory roles particularly early in an immune response. + mature NK T lymphocyte + mature NK T-cell + mature NK T-lymphocyte + mature NKT cell + mature natural killer T cell + mature natural killer T lymphocyte + mature natural killer T-cell + mature natural killer T-lymphocyte + cell + mature NK T cell + + + + + + true + + + + + A mature alpha-beta T cell of a distinct lineage that bears natural killer markers and a T cell receptor specific for a limited set of ligands. NK T cells have activation and regulatory roles particularly early in an immune response. + GOC:add + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release. + suppressor T cell + suppressor T lymphocyte + suppressor T-cell + suppressor T-lymphocyte + BTO:0004520 + FMA:84070 + regulatory T lymphocyte + regulatory T-cell + regulatory T-lymphocyte + cell + This cell type may express FoxP3 and CD25 and secretes IL-10 and TGF-beta. + regulatory T cell + + + + + + true + + + + + A T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release. + GOC:add + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature B cell is a B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation. + immature B lymphocyte + immature B-cell + immature B-lymphocyte + newly formed B cell + cell + Immature B cells are also reportedly CD5-positive, CD10-positive, CD19-positive, CD20-positive, CD21-positive, CD22-positive, CD24-positive, CD25-negative, CD27-negative, CD34-negative, CD38-positive, CD40-positive, CD43-negative, CD45-positive, CD48-positive, CD53-positive, CD79a-positive, CD80-negative, CD81-positive, CD86-negative, CD95-negative, CD127-negative, CD138-negative, CD185-positive, CD196-positive, MHCII/HLA-DR-positive, RAG-positive, TdT-negative, Vpre-B-negative, and preBCR-negative. Transcription factors expressed: Pax5-positive. + immature B cell + + + + + An immature B cell is a B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation. + GOC:add + GOC:dsd + GOC:rhs + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + PMID:20081059 + PMID:20839338 + + + + + newly formed B cell + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + + + + + + A precursor B cell is a B cell with the phenotype CD10-positive. + BTO:0001133 + CALOHA:TS-0819 + cell + pre-B cell + precursor B cell + + + + + + true + + + + + A precursor B cell is a B cell with the phenotype CD10-positive. + GOC:rhs + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen. + transitional B cell + transitional stage B lymphocyte + transitional stage B-cell + transitional stage B-lymphocyte + T1 B cell + T2 B cell + T3 B cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'transitional B cell'. + transitional stage B cell + + + + + + true + + + + + An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen. + GOC:add + GO_REF:0000031 + ISBN:0781735149 + PMID:12810111 + PMID:22343568 + + + + + transitional B cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A B cell of distinct lineage and surface marker expression. B-1 B cells are thought to be the primary source of natural IgM immunoglobulin, that is, IgM produced in large quantities without prior antigenic stimulation and generally reactive against various microorganisms, as well as the source of T-independent IgA immunoglobulin in the mucosal areas. These cells are CD43-positive. + B-1 B lymphocyte + B-1 B-cell + B-1 B-lymphocyte + B-1 cell + B1 B cell + B1 B lymphocyte + B1 B-cell + B1 B-lymphocyte + B1 cell + cell + There are small numbers of B-1 cells found in the lymph nodes and spleen, while larger numbers can be found in the peritoneal and pleural cavities. B-1 B cells are reportedly CD11b-positive, CD20-positive, CD21-positive, CD27-positive, CD44-positive, CD45RB-positive, CD48-positive, CD70-negative, CD150-positive, CD244-negative, CD352-positive, sIgM-positive, and sIgD-low. + B-1 B cell + + + + + + true + + + + + A B cell of distinct lineage and surface marker expression. B-1 B cells are thought to be the primary source of natural IgM immunoglobulin, that is, IgM produced in large quantities without prior antigenic stimulation and generally reactive against various microorganisms, as well as the source of T-independent IgA immunoglobulin in the mucosal areas. These cells are CD43-positive. + GOC:add + GOC:dsd + GO_REF:0000031 + PMID:11861604 + PMID:20933013 + PMID:21220451 + http://en.wikipedia.org/wiki/B-1_cell + + + + + + + + + + + + + + + + + + + + A B-1 B cell that has the phenotype CD5-positive. + B-1a B lymphocyte + B-1a B-cell + B-1a B-lymphocyte + B1a B cell + B1a B lymphocyte + B1a B-cell + B1a B-lymphocyte + B1a cell + CD5(+) B1 cell + CD5+ B1 cell + CD5-positive B1 cell + cell + B-1a B cell + + + + + + true + + + + + A B-1 B cell that has the phenotype CD5-positive. + GOC:add + PMID:11861604 + + + + + + + + + + + + + + + + + + + + A B-1 B cell that has the phenotype CD5-negative, but having other phenotypic attributes of a B-1 B cell. + B-1b B lymphocyte + B-1b B-cell + B-1b B-lymphocyte + B1b B cell + B1b B lymphocyte + B1b B-cell + B1b B-lymphocyte + B1b cell + cell + B-1b B cell + + + + + + true + + + + + A B-1 B cell that has the phenotype CD5-negative, but having other phenotypic attributes of a B-1 B cell. + GOC:add + PMID:11861604 + + + + + + + + + + + + + + + + + + + + + + + + A conventional B cell subject to antigenic stimulation and dependent on T cell help and with a distinct surface marker expression pattern from B-1 B cells. These cells are CD43-negative. + B-2 B lymphocyte + B-2 B-cell + B-2 B-lymphocyte + B2 B cell + B2 B lymphocyte + B2 B-cell + B2 B-lymphocyte + B2 cell + cell + B-0 B cell + B-2 B cells are reportedly CD48-positive, CD244-negative, and CD352-positive. + B-2 B cell + + + + + + true + + + + + A conventional B cell subject to antigenic stimulation and dependent on T cell help and with a distinct surface marker expression pattern from B-1 B cells. These cells are CD43-negative. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0781735149 + PMID:11861604 + PMID:20933013 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A natural killer cell that is developmentally immature and expresses natural killer cell receptors (NKR). + immature NK cell + cell + p-NK + In mouse the NKR are Ly49 molecules and in human these cells express KIR molecules. + immature natural killer cell + + + + + + true + + + + + A natural killer cell that is developmentally immature and expresses natural killer cell receptors (NKR). + GOC:add + GO_REF:0000031 + ISBN:0781735149 + PMID:12457618 + + + + + p-NK + PMID:12457618 + + + + + + + + + + + + + + + + + A natural killer cell that is developmentally mature and expresses a variety of inhibitory and activating receptors that recognize MHC class I and other stress related molecules. + LAK cell + lymphokine activated killer cell + mature NK cell + cell + mature natural killer cell + + + + + A natural killer cell that is developmentally mature and expresses a variety of inhibitory and activating receptors that recognize MHC class I and other stress related molecules. + GOC:add + GO_REF:0000031 + ISBN:0781735149 + PMID:14685782 + + + + + LAK cell + PMID:14685782 + + + + + lymphokine activated killer cell + PMID:14685782 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphoid progenitor cell that is committed to the natural killer cell lineage, expressing CD122 (IL-15) receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. In human this cell has the phenotype CD34-positive, CD45RA-positive, CD10-positive, CD117-negative, and CD161 negative. + NKP + natural killer cell progenitor + pro-natural killer cell + cell + null cell + preNK cell + Most markers only described for human pro NK cells. + pro-NK cell + + + + + + true + + + + + A lymphoid progenitor cell that is committed to the natural killer cell lineage, expressing CD122 (IL-15) receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. In human this cell has the phenotype CD34-positive, CD45RA-positive, CD10-positive, CD117-negative, and CD161 negative. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:11532393 + PMID:12457618 + PMID:15032583 + PMID:15766674 + + + + + NKP + PMID:12457618 + PMID:15032583 + PMID:15766674 + + + + + null cell + PMID:11532393 + + + + + preNK cell + PMID:11532393 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs. + pre-pro B cell + BTO:0003104 + pro-B lymphocyte + pro-B-cell + pro-B-lymphocyte + progenitor B cell + progenitor B lymphocyte + progenitor B-cell + progenitor B-lymphocyte + cell + pre-B cell (Philadelphia nomenclature) + Human pro-B cells are reportedly CD10-positive, CD22-positive, CD34-positive, CD38-positive, CD45-low, CD48-positive, CD79a-positive, CD127-positive, CD184-positive, RAG-positive, TdT-positive, Vpre-B-positive, pre-BCR-negative, IgD-negative, and IgM-negative. Transcription factors expressed: Pax5-positive, EBF-positive, E2A-negative, Ikaros-negative, and PU.1-negative. + pro-B cell + + + + + + true + + + + + A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs. + GOC:add + GOC:dsd + ISBN:0781735149 + PMID:12633665 + PMID:16551251 + PMID:18432934 + + + + + pre-pro B cell + PMID:17582343 + + + + + pre-B cell (Philadelphia nomenclature) + PMID:11244048 + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage. + pro-T lymphocyte + progenitor T cell + DN1 cell + DN1 thymocyte + TN1 cell + cell + pro-T cell + + + + + + true + + + + + A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage. + GOC:add + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates. + cell + Note that this is a non-mammalian cell type. + thromboblast + + + + + + true + + + + + A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates. + GOC:add + GOC:tfm + PMID:7758949 + + + + + + + + + + + + + + + + + + + + + + + + + + A myeloblast committed to the basophil lineage. + cell + basophilic myeloblast + + + + + + true + + + + + A myeloblast committed to the basophil lineage. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + A promyelocyte committed to the basophil lineage. + FMA:84208 + cell + basophilic promyelocyte + + + + + + true + + + + + A promyelocyte committed to the basophil lineage. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell of the mast cell lineage. Markers for this cell are FceRIa-low, CD117-positive, CD9-positive, T1/ST2-positive, SCA1-negative, and lineage-negative. + MCP + cell + CFU-MC + CFU-Mast + colony forming unit mast cell + MCP are CD16-positive, CD32-positive, CD34-positive, CD45-positive, integrin beta-7-positive, and lin-negative (CD2, CD3e, CD4, CD5, CD8a, CD14, CD19, CD20, CD27, integrin alpha-M, ly6c, ly6g, NCAM-1, and ter119). These cells also express the transcription factors GATA-1, GATA-2, and MITF, but not C/EBPa. + mast cell progenitor + + + + + + true + + + + + A progenitor cell of the mast cell lineage. Markers for this cell are FceRIa-low, CD117-positive, CD9-positive, T1/ST2-positive, SCA1-negative, and lineage-negative. + GOC:add + GOC:dsd + PMCID:PMC1183570 + PMCID:PMC1312421 + PMID:8629001 + PMID:9354811 + http://www.copewithcytokines.de + + + + + + + + + + + + + + + + + + + + + + + + + + A myeloblast committed to the eosinophil lineage. + cell + eosinophilic myeloblast + + + + + + true + + + + + A myeloblast committed to the eosinophil lineage. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + A promyelocyte committed to the eosinophil lineage. + FMA:84199 + cell + eosinophilic promyelocyte + + + + + + true + + + + + A promyelocyte committed to the eosinophil lineage. + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell of the neutrophil lineage. + cell + neutrophil stem cell + neutrophil progenitor cell + + + + + + true + + + + + A progenitor cell of the neutrophil lineage. + GOC:add + GOC:tfm + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, a high nuclear-to-cytoplasmic ration (5:1-7:1), and a nongranular basophilic cytoplasm. They reside in the bone marrow. + BTO:0000187 + FMA:83524 + cell + myeloblast + + + + + + true + + + + + The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, a high nuclear-to-cytoplasmic ration (5:1-7:1), and a nongranular basophilic cytoplasm. They reside in the bone marrow. + GOC:add + ISBN:0721601464 + http://en.wikipedia.org/wiki/Myeloblast + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative. + CALOHA:TS-0825 + FMA:83530 + cell + promyelocyte + + + + + A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative. + GOC:add + GOC:amm + GOC:tfm + ISBN:0721601464 + http://www.cap.org + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans. + BTO:0000725 + CALOHA:TS-0448 + MPP + hemopoietic progenitor cell + cell + Markers differ between mouse and human. + hematopoietic multipotent progenitor cell + + + + + + true + + + + + A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans. + GOC:add + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + A progenitor cell restricted to the lymphoid lineage. + lymphoid progenitor cell + BTO:0004731 + CALOHA:TS-2025 + FMA:70338 + cell + Note that this is a class of cell types, not an identified single cell type. + lymphoid lineage restricted progenitor cell + + + + + + true + + + + + A progenitor cell restricted to the lymphoid lineage. + GOC:add + GOC:tfm + + + + + + + + + + + + + + + + + + + + A progenitor cell restricted to the myeloid lineage. + myeloid progenitor cell + BTO:0004730 + CALOHA:TS-2099 + FMA:70339 + cell + Note that this is a class of cell types, not an identified single cell type. + myeloid lineage restricted progenitor cell + + + + + + true + + + + + A progenitor cell restricted to the myeloid lineage. + GOC:add + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature cell of the conventional dendritic cell lineage, characterized by high levels of antigen uptake via endocytosis, macropinocytosis, and phagocytosis, and typically found resident in the tissues. Markers for this cell are CD80-low, CD86-low, and MHC-II-low. + immature myeloid dendritic cell + cell + immature conventional dendritic cell + + + + + + true + + + + + An immature cell of the conventional dendritic cell lineage, characterized by high levels of antigen uptake via endocytosis, macropinocytosis, and phagocytosis, and typically found resident in the tissues. Markers for this cell are CD80-low, CD86-low, and MHC-II-low. + GOC:add + GOC:tfm + PMID:9521319 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature cell of the conventional dendritic cell lineage, characterized by a high capacity for antigen presentation and typically found in a lymph node. + mature dendritic cell + FMA:83038 + mature myeloid dendritic cell + cell + mature conventional dendritic cell + + + + + + true + + + + + A mature cell of the conventional dendritic cell lineage, characterized by a high capacity for antigen presentation and typically found in a lymph node. + GOC:add + GOC:tfm + PMID:9521319 + + + + + mature dendritic cell + GOC:add + + + + + + + + + + + + + + + + + + + + + + + + A leukocyte with a single non-segmented nucleus in the mature form. + BTO:0000878 + CALOHA:TS-0768 + FMA:86713 + mononuclear leukocyte + peripheral blood mononuclear cell + cell + mononuclear cell + + + + + + true + + + + + A leukocyte with a single non-segmented nucleus in the mature form. + GOC:add + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A resting mature B cell that has the phenotype IgM-positive, IgD-positive, CD23-positive and CD21-positive, and found in the B cell follicles of the white pulp of the spleen or the corticol areas of the peripheral lymph nodes. This cell type is also described as being CD19-positive, B220-positive, AA4-negative, CD43-negative, and CD5-negative. + Fo B cell + Fo B-cell + follicular B lymphocyte + follicular B-cell + follicular B-lymphocyte + cell + Follicular B cells are also reportedly CD48-positive, CD84-positive, CD229-positive, and CD352-positive. + follicular B cell + + + + + + true + + + + + A resting mature B cell that has the phenotype IgM-positive, IgD-positive, CD23-positive and CD21-positive, and found in the B cell follicles of the white pulp of the spleen or the corticol areas of the peripheral lymph nodes. This cell type is also described as being CD19-positive, B220-positive, AA4-negative, CD43-negative, and CD5-negative. + GOC:add + GOC:dsd + ISBN:0781735149 + PMCID:PMC2193793 + PMID:20933013 + http://en.wikipedia.org/wiki/Follicular_B_Cells + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A rapidly cycling mature B cell that has distinct phenotypic characteristics and is involved in T-dependent immune responses and located typically in the germinal centers of lymph nodes. This cell type expresses Ly77 after activation. + GC B cell + GC B lymphocyte + GC B-cell + GC B-lymphocyte + germinal center B lymphocyte + germinal center B-cell + germinal center B-lymphocyte + cell + Germinal center B cells are also reportedly CD10-positive, CD19-positive, CD20-positive, CD38-positive, CD44-low, CD45-positive, CD48-positive, CD95-positive, CD352-positive, and HLA-DR-positive. Transcription factors: BCL6-positive, Ets1-positive, IRF8-positive, MTA3-positive, OBF1-positive, PAX5-positive, SpiB-positive, and STAT3-positive. + germinal center B cell + + + + + + true + + + + + A rapidly cycling mature B cell that has distinct phenotypic characteristics and is involved in T-dependent immune responses and located typically in the germinal centers of lymph nodes. This cell type expresses Ly77 after activation. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0781735149 + PMID:19447676 + PMID:20933013 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature B cell that is located in the marginal zone of the spleen with the phenotype CD23-negative and CD21-positive and expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL. This cell type is also described as being CD19-positive, B220-positive, IgM-high, AA4-negative, CD35-high. + MZ B cell + MZ B lymphocyte + MZ B-cell + MZ B-lymphocyte + marginal zone B lymphocyte + marginal zone B-cell + marginal zone B-lymphocyte + cell + MZ B cells are reportedly CD1-positive (mice), CD20-positive, CD48-positive, CD84-positive, CD150-positive, CD229-positive, and CD352-positive. + marginal zone B cell + + + + + + true + + + + + A mature B cell that is located in the marginal zone of the spleen with the phenotype CD23-negative and CD21-positive and expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL. This cell type is also described as being CD19-positive, B220-positive, IgM-high, AA4-negative, CD35-high. + GOC:add + GOC:dsd + ISBN:0781735149 + PMID:10933592 + PMID:20933013 + http://en.wikipedia.org/wiki/Marginal-zone_B_cell + + + + + + + + + + An epithelial cell of the vestibular sensory organ that is characterized by intense enzymatic activities and numerous basal membrane infoldings. + cell + vestibular dark cell + + + + + An epithelial cell of the vestibular sensory organ that is characterized by intense enzymatic activities and numerous basal membrane infoldings. + PMID:11223304 + + + + + + + + + + + + + + + An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. + ciliated olfactory sensory neuron + ciliated sensory neuron + cell + ciliated olfactory receptor neuron + + + + + An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. + PMID:16841163 + + + + + + + + + An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. + microvillous olfactory sensory neuron + cell + microvillous sensory neuron + microvillous olfactory receptor neuron + + + + + An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. + PMID:16841163 + + + + + + + + + An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. + crypt cell + crypt olfactory sensory neuron + crypt sensory neuron + cell + crypt olfactory receptor neuron + + + + + An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. + PMID:16841163 + + + + + + + + + + + + + + + + + + + + A neuron that releases serotonin as a neurotransmitter. + CL:0000403 + FBbt:00005133 + WBbt:0006837 + 5-HT neuron + 5-hydroxytryptamine neuron + cell + serotinergic neuron + serotonergic neuron + + + + + A neuron that releases serotonin as a neurotransmitter. + SANBI:mhl + + + + + + + + + + + + + + + + Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded. + cell + neuromast mantle cell + + + + + Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded. + ISBN:0125296509 + + + + + + + + + + + + + + + + Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells. + cell + neuromast support cell + + + + + Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells. + ISBN:0125296509 + + + + + + + + + + + + + + + + + + + + + Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons. + FMA:62302 + olfactory sustentacular cell + supporting cell of olfactory epithelium + sustentaculocyte of olfactory epithelium + cell + olfactory epithelial support cell + + + + + Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons. + GOC:tfm + ISBN:0517223651 + SANBI:mhl + + + + + + + + + + + + + + + Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts. + cell + interneuromast cell + + + + + Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts. + SANBI:mhl + + + + + + + + + Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. + hair cell + BTO:0004744 + cell + sensory hair cell + + + + + Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. + SANBI:mhl + + + + + + + + + + + + + + + + + + + + Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. + cell + neuromast hair cell + + + + + Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. + SANBI:mhl + + + + + + + + + + + + + + + + + + + A skeletal muscle myoblast that differentiates into slow muscle fibers. + cell + slow muscle myoblast + + + + + A skeletal muscle myoblast that differentiates into slow muscle fibers. + SANBI:mhl + + + + + + + + + + + + + + + + + + + A skeletal muscle myoblast that differentiates into fast muscle fibers. + cell + fast muscle myoblast + + + + + A skeletal muscle myoblast that differentiates into fast muscle fibers. + SANBI:mhl + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A monocyte that responds rapidly to microbial stimuli by secreting cytokines and antimicrobial factors and which is characterized by high expression of CCR2 in both rodents and humans, negative for the lineage markers CD3, CD19, and CD20, and of larger size than non-classical monocytes. + inflammatory monocyte + cell + Markers: CCR2+CXCCR1<low> (human, mouse, rat). + classical monocyte + + + + + + true + + + + + A monocyte that responds rapidly to microbial stimuli by secreting cytokines and antimicrobial factors and which is characterized by high expression of CCR2 in both rodents and humans, negative for the lineage markers CD3, CD19, and CD20, and of larger size than non-classical monocytes. + GOC:add + GO_REF:0000031 + PMID:16322748 + PMID:18303997 + PMID:20628149 + PMID:20870168 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A macrophage which develops from an inflammatory monocyte and is recruited into the tissues in response to injury and infection as part of an inflammatory response. Markers include CD11b-positive, CD68-positive, and F4/80-positive. + FMA:84643 + FMA:84645 + free macrophage + wandering histiocyte + cell + Markers: CD11b+, CD68+; Mouse: F4/80+; role or process: immune, inflammation (inflammatory response). + elicited macrophage + + + + + + true + + + + + A macrophage which develops from an inflammatory monocyte and is recruited into the tissues in response to injury and infection as part of an inflammatory response. Markers include CD11b-positive, CD68-positive, and F4/80-positive. + GOC:add + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:15771589 + + + + + + + + + + + + + + + + + + + + A macrophage that suppresses immune responses. + cell + Markers: May express: IL10, TGFbeta. + suppressor macrophage + + + + + + true + + + + + A macrophage that suppresses immune responses. + GOC:add + GOC:tfm + PMID:20402419 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An elicited macrophage that is recruited into the tissues in response to injury and infection as part of an inflammatory response, expresses high levels of pro-inflammatory cytokines, ROS and NO, and shows potent microbicidal activity. + classically activated macrophage + cell + M1 macrophage + Markers: Express: TNFa, IL1b, IL6, iNOS, NADPH-oxidase; produce: reactive oxygen species, nitric oxide; role or process: immune, inflammation (inflammatory response). + inflammatory macrophage + + + + + + true + + + + + An elicited macrophage that is recruited into the tissues in response to injury and infection as part of an inflammatory response, expresses high levels of pro-inflammatory cytokines, ROS and NO, and shows potent microbicidal activity. + GOC:ana + GO_REF:0000031 + PMID:19132917 + + + + + + + + + + + + + + + + + + + + A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. + FMA:84642 + FMA:84644 + fixed macrophage + resting histiocyte + cell + tissue-resident macrophage + + + + + + true + + + + + A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. + GOC:ana + GO_REF:0000031 + PMID:19770654 + + + + + + + + + + + + + + + + + + + + A gut-associated lymphoid tissue macrophage found in lamina propria of the gut. + cell + gastrointestinal tract (lamina propria) macrophage + + + + + + true + + + + + A gut-associated lymphoid tissue macrophage found in lamina propria of the gut. + GOC:ana + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage resident found in the thymus, involved in the clearance of apoptotic thymocytes. + cell + Role or process: immune, clearance of apoptotic thymocytes, antigen-presentation. + thymic macrophage + + + + + + true + + + + + A tissue-resident macrophage resident found in the thymus, involved in the clearance of apoptotic thymocytes. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:9048205 + + + + + + + + + A tissue-resident macrophage found in a secondary lymphoid organ. + cell + secondary lymphoid organ macrophage + + + + + A tissue-resident macrophage found in a secondary lymphoid organ. + GOC:ana + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A secondary lymphoid organ macrophage found in a lymph node. This cell is CD169-high. + MF.LN + cell + Marker was observed on rat cells. + lymph node macrophage + + + + + + true + + + + + A secondary lymphoid organ macrophage found in a lymph node. This cell is CD169-high. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:11971865 + + + + + + + + + + + + + + + + + + + + + + + + A gut-associated lymphoid tissue macrophage found in tonsils. + cell + tonsillar macrophage + + + + + + true + + + + + A gut-associated lymphoid tissue macrophage found in tonsils. + GOC:ana + GO_REF:0000031 + PMID:16048540 + + + + + + + + + + + + + + + + + + + + A gut-associated lymphoid tissue macrophage found in the Peyer's patches. + cell + Peyer's patch macrophage + + + + + + true + + + + + A gut-associated lymphoid tissue macrophage found in the Peyer's patches. + GOC:ana + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + A secondary lymphoid organ macrophage found in the spleen. + FMA:83026 + cell + Role or process: immune, clearance of apoptotic and senescent cells. + splenic macrophage + + + + + + true + + + + + A secondary lymphoid organ macrophage found in the spleen. + GO_REF:0000031 + PMID:15771589 + PMID:16322748 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A splenic macrophage found in the marginal zone of the spleen, involved in recognition and clearance of particulate material from the splenic circulation. Markers include F4/80-negative, MARCO-positive, SR-A-positive, SIGN-R1-positive, and Dectin2-positive. + cell + Markers: Mouse: F4/80-, MARCO+, SR-A+, SIGN-R1+, Dectin2+. + splenic marginal zone macrophage + + + + + + true + + + + + A splenic macrophage found in the marginal zone of the spleen, involved in recognition and clearance of particulate material from the splenic circulation. Markers include F4/80-negative, MARCO-positive, SR-A-positive, SIGN-R1-positive, and Dectin2-positive. + GOC:ana + GO_REF:0000031 + PMID:16861066 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A splenic macrophage found in the areas surrounding the white pulp of the spleen, adjacent to the marginal sinus. Markers include F4/80-negative, Dectin2-low, sialoadhesin-positive. + cell + Markers: Mouse: F4/80-, Dectin2-low, sialoadhesin+. + splenic metallophillic macrophage + + + + + + true + + + + + A splenic macrophage found in the areas surrounding the white pulp of the spleen, adjacent to the marginal sinus. Markers include F4/80-negative, Dectin2-low, sialoadhesin-positive. + GOC:ana + GO_REF:0000031 + PMID:20018690 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A splenic macrophage found in the red-pulp of the spleen, and involved in immune responses to blood-borne pathogens and in the clearance of senescent erythrocytes. Markers include F4/80-positive, CD68-positive, MR-positive, Dectin2-positive, macrosialin-positive, and sialoadhesin-low. + cell + Markers: Mouse: F4/80+, CD68+, MR+, Dectin2+, macrosialin+, sialoadhesin-low; role or process: immune, clearance of senescent erythrocytes. + splenic red pulp macrophage + + + + + + true + + + + + A splenic macrophage found in the red-pulp of the spleen, and involved in immune responses to blood-borne pathogens and in the clearance of senescent erythrocytes. Markers include F4/80-positive, CD68-positive, MR-positive, Dectin2-positive, macrosialin-positive, and sialoadhesin-low. + GOC:ana + GO_REF:0000031 + PMID:19644016 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type of monocyte characterized by low expression of CCR2, low responsiveness to monocyte chemoattractant CCL2/MCP1, low phagocytic activity, and decrease size relative to classical monocytes, but increased co-stimulatory activity. May also play a role in tissue repair. + patrolling monocyte + resident monocyte + cell + Markers: CCR2-CX3CCR1+ (human, mouse, rat); human: CD16+, CCR5+, CD32/FcgRII-high, MHCII+, CD86+; mouse: CD62L-Ly6C-. + non-classical monocyte + + + + + + true + + + + + A type of monocyte characterized by low expression of CCR2, low responsiveness to monocyte chemoattractant CCL2/MCP1, low phagocytic activity, and decrease size relative to classical monocytes, but increased co-stimulatory activity. May also play a role in tissue repair. + GOC:add + GO_REF:0000031 + PMID:16322748 + PMID:18303997 + PMID:20628149 + PMID:20870168 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A splenic macrophage found in the white pulp of the spleen. Markers include F4/80-negative, CD68-positive, and macrosialin-positive. + cell + Markers: Mouse: F4/80-, CD68+, macrosialin+. + splenic white pulp macrophage + + + + + + true + + + + + A splenic macrophage found in the white pulp of the spleen. Markers include F4/80-negative, CD68-positive, and macrosialin-positive. + GOC:ana + GO_REF:0000031 + PMID:11207597 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A splenic white pulp macrophage found in and around the germinal centers of the white pulp of the spleen that participates in phagocytosis of apoptotic B cells from the germinal centers. A marker for a cell of this type is Mertk-positive. + cell + splenic tingible body macrophage + + + + + + true + + + + + A splenic white pulp macrophage found in and around the germinal centers of the white pulp of the spleen that participates in phagocytosis of apoptotic B cells from the germinal centers. A marker for a cell of this type is Mertk-positive. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:19631584 + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage found in the central nervous system. + CNS macrophage + cell + central nervous system macrophage + + + + + + true + + + + + A tissue-resident macrophage found in the central nervous system. + GO_REF:0000031 + PMID:16322748 + + + + + + + + + + + + + + + + + + + + + + + + A central nervous system macrophage found in the meninges (the three membranes that surround the brain). This macrophage types is highly phagocytic and expresses scavenger receptors. + cell + meningeal macrophage + + + + + + true + + + + + A central nervous system macrophage found in the meninges (the three membranes that surround the brain). This macrophage types is highly phagocytic and expresses scavenger receptors. + GOC:ana + GO_REF:0000031 + PMID:11591794 + + + + + + + + + + + + + + + + + + + + + + + + A central nervous system macrophage found at the interface between the blood and the cerebrospinal fluid in the brain. This cell expresses scavenger receptors. + cell + choroid-plexus macrophage + + + + + + true + + + + + A central nervous system macrophage found at the interface between the blood and the cerebrospinal fluid in the brain. This cell expresses scavenger receptors. + GOC:ana + GO_REF:0000031 + PMID:9550136 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+. + cell + Markers: Human/monkey, mice: CD163. Human: CD14+CD16+CD163+. + perivascular macrophage + + + + + + true + + + + + A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+. + GOC:tfm + GO_REF:0000031 + PMID:16507898 + + + + + + + + + + + + + + + + + + + + A thymic macrophage found in the thymic medulla. + cell + thymic medullary macrophage + + + + + + true + + + + + A thymic macrophage found in the thymic medulla. + GOC:ana + GO_REF:0000031 + PMID:9048205 + + + + + + + + + + + + + + + + + + + + A thymic macrophage found in the thymic cortex. + cell + thymic cortical macrophage + + + + + + true + + + + + A thymic macrophage found in the thymic cortex. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:9048205 + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage found in the mucosa associated lymphoid tissue. + cell + mucosa-associated lymphoid tissue macrophage + + + + + + true + + + + + A tissue-resident macrophage found in the mucosa associated lymphoid tissue. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:19906191 + + + + + + + + + + + + + + + + + + + + + + + + A mucosa-associated lymphoid tissue macrophage found in the mucosa-associated lymphoid tissues of the gut. + cell + gut-associated lymphoid tissue macrophage + + + + + + true + + + + + A mucosa-associated lymphoid tissue macrophage found in the mucosa-associated lymphoid tissues of the gut. + GOC:ana + GO_REF:0000031 + PMID:19906191 + + + + + + + + + + + + + + + + + + + + + + + + A mucosa-associated lymphoid tissue macrophage found in the nasal and bronchial mucosa-associated lymphoid tissues. + cell + nasal and broncial associated lymphoid tissue macrophage + + + + + + true + + + + + A mucosa-associated lymphoid tissue macrophage found in the nasal and bronchial mucosa-associated lymphoid tissues. + GOC:ana + GO_REF:0000031 + PMID:16048540 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymph node macrophage found in the subcapsular sinus of lymph nodes that participates in sensing, clearance, and antigen presentation of lymph-borne particulate antigens. This macrophage is capable of activating invaraint NKT cells and is CD169-positive. + cell + lymph node subcapsular sinus macrophage + + + + + + true + + + + + A lymph node macrophage found in the subcapsular sinus of lymph nodes that participates in sensing, clearance, and antigen presentation of lymph-borne particulate antigens. This macrophage is capable of activating invaraint NKT cells and is CD169-positive. + GOC:tfm + GO_REF:0000031 + PMID:14668803 + PMID:17934446 + PMID:20228797 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymph node macrophage found in the cortex of lymph nodes, in particular in and around the germinal centers, and that participates in phagocytosis of apoptotic B cells from the germinal centers. + cell + lymph node tingible body macrophage + + + + + + true + + + + + A lymph node macrophage found in the cortex of lymph nodes, in particular in and around the germinal centers, and that participates in phagocytosis of apoptotic B cells from the germinal centers. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:19631584 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature myeloid leukocyte of heterogeneous phenotype found particularly in cancer and sepsis patients that is capable of suppressing activity of T cells in ex vivo assays. This cell type is CD45-positive, CD11b-positive. + cell + Markers: Mouse: CD11b+GR1+CD31+; Human: CD34+ CD33+CD15-CD13+. (According to some reports in humans these cells are iNOS+ARG1+IL13+IFNg+); location: In cancerous tissue; in the blood and lymphoid organs in sepsis. + myeloid suppressor cell + + + + + + true + + + + + An immature myeloid leukocyte of heterogeneous phenotype found particularly in cancer and sepsis patients that is capable of suppressing activity of T cells in ex vivo assays. This cell type is CD45-positive, CD11b-positive. + GOC:add + GOC:ana + GO_REF:0000031 + PMID:16168663 + PMID:17016554 + PMID:17016559 + + + + + + + + + + + + + + + + + + + + + + + + An elicited macrophage characterized by low production of pro-inflammatory and Th1 polarizing cytokines and high expression of arginase-1, and associated with tissue remodelling. + cell + M2 macrophage + Role or process: tissue remodeling. + alternatively activated macrophage + + + + + + true + + + + + An elicited macrophage characterized by low production of pro-inflammatory and Th1 polarizing cytokines and high expression of arginase-1, and associated with tissue remodelling. + GOC:ana + GOC:tfm + GO_REF:0000031 + PMID:20510870 + + + + + + + + + A type of cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. + BTO:0003872 + FMA:83586 + cell + foam cell + + + + + A type of cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. + GOC:add + + + + + + + + + + + + + + + A type of foam cell derived from a smooth muscle cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. + cell + smooth muscle cell derived foam cell + + + + + A type of foam cell derived from a smooth muscle cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. + GOC:add + + + + + + + + + + + + + + + + + + + + + + + + An immature T cell located in the thymus. + immature T cell + immature T lymphocyte + immature T-cell + immature T-lymphocyte + BTO:0001372 + CALOHA:TS-1042 + FMA:72202 + XAO:0003159 + thymic lymphocyte + cell + thymocyte + + + + + + true + + + + + An immature T cell located in the thymus. + GOC:add + GOC:tfm + GO_REF:0000031 + PMID:12415312 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pro-T cell that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-negative. + DN1 thymic pro-T lymphocyte + DN1 thymic pro-T-cell + DN1 thymic pro-T-lymphocyte + DN1 thymic progenitor T cell + DN1 thymocyte + double negative 1 + preT.DN1.Th + cell + DN1 thymic pro-T cell + + + + + + true + + + + + A pro-T cell that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-negative. + GOC:add + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An antigen inexperienced CD4-positive, alpha-beta T cell with the phenotype CCR7-positive, CD127-positive and CD62L-positive. This cell type develops in the thymus. This cell type is also described as being CD25-negative, CD62L-high, and CD44-low. + naive CD4+ T cell + T.4Nve.Sp + Th0 + naive thymus-derived CD4-positive, alpha-beta T lymphocyte + naive thymus-derived CD4-positive, alpha-beta T-cell + naive thymus-derived CD4-positive, alpha-beta T-lymphocyte + cell + These cells have not been exposed to antigen following thymic T-cell selection; found in blood and secondary lymphoid organs. This cell type is compatible with the HIPC Lyoplate markers for 'naive CD4+ T cell', but includes additional markers known to be expressed on naive CD4+ T cells. + naive thymus-derived CD4-positive, alpha-beta T cell + + + + + + true + + + + + An antigen inexperienced CD4-positive, alpha-beta T cell with the phenotype CCR7-positive, CD127-positive and CD62L-positive. This cell type develops in the thymus. This cell type is also described as being CD25-negative, CD62L-high, and CD44-low. + GOC:add + GOC:tfm + GO_REF:0000031 + PMID:19100699 + PMID:22343568 + http://www.immgen.org/index_content.html + + + + + naive CD4+ T cell + PMID:22343568 + + + + + Th0 + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A recently activated CD4-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive. + activated CD4-positive, alpha-beta T lymphocyte + activated CD4-positive, alpha-beta T-cell + activated CD4-positive, alpha-beta T-lymphocyte + cell + activated CD4-positive, alpha-beta T cell + + + + + + true + + + + + A recently activated CD4-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive. + GOC:add + GOC:pam + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive, alpha-beta long-lived T cell with the phenotype CD45RO-positive and CD127-positive. This cell type is also described as being CD25-negative, CD44-high, and CD122-high. + CD4-positive, alpha-beta memory T lymphocyte + CD4-positive, alpha-beta memory T-cell + CD4-positive, alpha-beta memory T-lymphocyte + cell + T4.Mem.Sp + CD4-positive, alpha-beta memory T cell + + + + + + true + + + + + CD4-positive, alpha-beta long-lived T cell with the phenotype CD45RO-positive and CD127-positive. This cell type is also described as being CD25-negative, CD44-high, and CD122-high. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low. + naive T lymphocyte + naive T-cell + naive T-lymphocyte + cell + naive T cell + + + + + + true + + + + + Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19100699 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive, CXCR3-negative, CCR6-positive, and capable of producing IL-17. + IL-17-producing CD4+ T helper + T helper cells type 17 + T(H)-17 cell + Th17 CD4+ T cell + Th17 T cell + Th17 T lymphocyte + Th17 T-cell + Th17 T-lymphocyte + Th17 cell + helper T cell type 17 + cell + This cell type is compatible with the HIPC Lyoplate markers for 'Th17 CD4+ T cell', but its logical definition includes additional known characteristics of T-helper 17 T cells. + T-helper 17 cell + + + + + + true + + + + + CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive, CXCR3-negative, CCR6-positive, and capable of producing IL-17. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:20303875 + PMID:20969597 + PMID:22343568 + + + + + Th17 CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell that has not experienced activation via antigen contact and has the phenotype CD45RA-positive, CCR7-positive and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low. + naive CD8+ T cell + naive thymus-dervied CD8-positive, alpha-beta T lymphocyte + naive thymus-dervied CD8-positive, alpha-beta T-cell + naive thymus-dervied CD8-positive, alpha-beta T-lymphocyte + T.8Nve.Sp + cell + This cell traffics in secondary lymphoid organs and blood. This cell type is compatible with the HIPC Lyoplate markers for 'naive CD8+ T cell', but includes additional markers known to be expressed on naive CD8+ T cells. + naive thymus-derived CD8-positive, alpha-beta T cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell that has not experienced activation via antigen contact and has the phenotype CD45RA-positive, CCR7-positive and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + PMID:22343568 + http://www.immgen.org/index_content.html + + + + + naive CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive alpha-beta T cell with regulatory function that produces IL-10. + T-regulatory T cell type 1 + Tr1 T cell + Tr1 T lymphocyte + Tr1 T-cell + Tr1 T-lymphocyte + cell + These cells are reportedly induced by IL-10 and are capable of producing IFN-gamma, IL-5, IL-10, and TGF-beta.) + Tr1 cell + + + + + + true + + + + + CD4-positive alpha-beta T cell with regulatory function that produces IL-10. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:16903904 + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive alpha-beta T cell with the phenotype CD25-positive, CTLA-4-positive, and FoxP3-positive with regulatory function. + iTreg + induced Treg + induced regulatory T cell + induced regulatory T lymphocyte + induced regulatory T-cell + induced regulatory T-lymphocyte + cell + aTreg + adaptive Treg + induced T-regulatory cell + + + + + + true + + + + + CD4-positive alpha-beta T cell with the phenotype CD25-positive, CTLA-4-positive, and FoxP3-positive with regulatory function. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19464985 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive alpha-beta T cell with the phenotype FoxP3-positive, CD25-positive, CD62L-positive, and CTLA-4 positive with regulatory function. + nTreg + natural Treg + natural regulatory T cell + natural regulatory T lymphocyte + natural regulatory T-cell + natural regulatory T-lymphocyte + cell + natural T-regulatory cell + + + + + + true + + + + + CD4-positive alpha-beta T cell with the phenotype FoxP3-positive, CD25-positive, CD62L-positive, and CTLA-4 positive with regulatory function. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19464985 + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive, alpha-beta memory T cell with the phenotype CCR7-positive, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + central memory CD4+ T cell + central CD4-positive, alpha-beta memory T cell + central CD4-positive, alpha-beta memory T lymphocyte + central CD4-positive, alpha-beta memory T-cell + central CD4-positive, alpha-beta memory T-lymphocyte + central memory CD4-positive, alpha-beta T lymphocyte + central memory CD4-positive, alpha-beta T-cell + central memory CD4-positive, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'central memory CD4+ T cell', but includes additional markers known to be expressed on central memory CD4+ T cells. + central memory CD4-positive, alpha-beta T cell + + + + + + true + + + + + CD4-positive, alpha-beta memory T cell with the phenotype CCR7-positive, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:22343568 + + + + + central memory CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive, alpha-beta memory T cell with the phenotype CCR7-negative, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + effector memory CD4+ T cell + effector CD4-positive, alpha-beta memory T cell + effector CD4-positive, alpha-beta memory T lymphocyte + effector CD4-positive, alpha-beta memory T-cell + effector CD4-positive, alpha-beta memory T-lymphocyte + effector memory CD4-positive, alpha-beta T lymphocyte + effector memory CD4-positive, alpha-beta T-cell + effector memory CD4-positive, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'effector memory CD4+ T cell', but includes additional markers known to be expressed on effector memory CD4+ T cells. + effector memory CD4-positive, alpha-beta T cell + + + + + + true + + + + + CD4-positive, alpha-beta memory T cell with the phenotype CCR7-negative, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:22343568 + + + + + effector memory CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, CD25-positive, and CCR7-negative. + activated CD8-positive, alpha-beta T lymphocyte + activated CD8-positive, alpha-beta T-cell + activated CD8-positive, alpha-beta T-lymphocyte + cell + activated CD8-positive, alpha-beta T cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, CD25-positive, and CCR7-negative. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD8-positive, alpha-beta memory T cell with the phenotype CCR7-positive, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + central memory CD8+ T cell + central CD8-positive, alpha-beta memory T cell + central CD8-positive, alpha-beta memory T lymphocyte + central CD8-positive, alpha-beta memory T-cell + central CD8-positive, alpha-beta memory T-lymphocyte + central memory CD8-positive, alpha-beta T lymphocyte + central memory CD8-positive, alpha-beta T-cell + central memory CD8-positive, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'central memory CD8+ T cell', but includes additional markers known to be expressed on central memory CD8+ T cells. + central memory CD8-positive, alpha-beta T cell + + + + + + true + + + + + CD8-positive, alpha-beta memory T cell with the phenotype CCR7-positive, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:20146720 + PMID:22343568 + + + + + central memory CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive, that secretes cytokines. + CD8-positive, alpha-beta cytokine secreting effector T lymphocyte + CD8-positive, alpha-beta cytokine secreting effector T-cell + CD8-positive, alpha-beta cytokine secreting effector T-lymphocyte + cell + CD8-positive, alpha-beta cytokine secreting effector T cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive, that secretes cytokines. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:20146720 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell with memory phenotype indicated by being CD45RO and CD127-positive. This cell type is also described as being CD25-negative, CD44-high, and CD122-high. + CD8-positive, alpha-beta memory T lymphocyte + CD8-positive, alpha-beta memory T-cell + CD8-positive, alpha-beta memory T-lymphocyte + T.8Mem.Sp + cell + CD8-positive, alpha-beta memory T cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell with memory phenotype indicated by being CD45RO and CD127-positive. This cell type is also described as being CD25-negative, CD44-high, and CD122-high. + GOC:tfm + GO_REF:0000031 + PMID:20146720 + + + + + + + + + + + + + + + + + + + + A mature T cell that differentiated and acquired cytotoxic function with the phenotype perforin-positive and granzyme-B positive. + BTO:0000289 + CALOHA:TS-0190 + FMA:70573 + cytotoxic T lymphocyte + cytotoxic T-cell + cytotoxic T-lymphocyte + cell + cytotoxic T cell + + + + + + true + + + + + A mature T cell that differentiated and acquired cytotoxic function with the phenotype perforin-positive and granzyme-B positive. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:18395547 + + + + + + + + + + + + + + + + + + + + + + + + A differentiated T cell with ability to traffic to peripheral tissues and is capable of mounting a specific immune response. + effector T lymphocyte + effector T-cell + effector T-lymphocyte + cell + effector T cell + + + + + + true + + + + + A differentiated T cell with ability to traffic to peripheral tissues and is capable of mounting a specific immune response. + GOC:PAM-ADD + GOC:tfm + ISBN:0877799148 + PMID:18395547 + + + + + + + + + + + + + + + + + + + + A effector T cell that provides help in the form of secreted cytokines to other immune cells. + BTO:0002417 + T-helper cell + helper T lymphocyte + helper T-cell + helper T-lymphocyte + cell + helper T cell + + + + + + true + + + + + A effector T cell that provides help in the form of secreted cytokines to other immune cells. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:18395547 + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD8-positive, alpha-beta memory T cell with the phenotype CCR7-negative, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + effector memory CD8+ T cell + effector CD8-positive, alpha-beta memory T cell + effector CD8-positive, alpha-beta memory T lymphocyte + effector CD8-positive, alpha-beta memory T-cell + effector CD8-positive, alpha-beta memory T-lymphocyte + effector memory CD8-positive, alpha-beta T lymphocyte + effector memory CD8-positive, alpha-beta T-cell + effector memory CD8-positive, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'effector memory CD8+ T cell', but includes additional markers known to be expressed on effector memory CD8+ T cells. + effector memory CD8-positive, alpha-beta T cell + + + + + + true + + + + + CD8-positive, alpha-beta memory T cell with the phenotype CCR7-negative, CD127-positive, CD45RA-negative, CD45RO-positive, and CD25-negative. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:20146720 + PMID:22343568 + + + + + effector memory CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + An immature alpha-beta T-cell that express Egr2. These cells give rise to T cells expressing NK markers. + immature NK T lymphocyte + immature NK T-cell + immature NK T-lymphocyte + immature NKT cell + cell + immature NK T cell + + + + + + true + + + + + An immature alpha-beta T-cell that express Egr2. These cells give rise to T cells expressing NK markers. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17589542 + PMID:19169262 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An alpha-beta intraepithelial T cell with the phenotype CD8-alpha-alpha-positive located in the columnar epithelium of the gastrointestinal tract. These cells have a memory phenotype of CD2-negative and CD5-negative. + CD8-alpha-alpha-positive, alpha-beta intraepithelial T lymphocyte + CD8-alpha-alpha-positive, alpha-beta intraepithelial T-cell + CD8-alpha-alpha-positive, alpha-beta intraepithelial T-lymphocyte + cell + CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell + + + + + + true + + + + + An alpha-beta intraepithelial T cell with the phenotype CD8-alpha-alpha-positive located in the columnar epithelium of the gastrointestinal tract. These cells have a memory phenotype of CD2-negative and CD5-negative. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:11685222 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature gamma-delta T cell located in the epidermis that regulates wound healing. + DETC + dendritic epidermal T lymphocyte + dendritic epidermal T-cell + dendritic epidermal T-lymphocyte + cell + In mice, DETC have an invariant T cell receptor. + dendritic epidermal T cell + + + + + + true + + + + + A mature gamma-delta T cell located in the epidermis that regulates wound healing. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:11976459 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta positive T cell that has the phenotype T-bet-positive, eomesodermin-positive, CXCR3-positive, CCR6-negative, and is capable of producing interferon-gamma. + BTO:0004793 + BTO:0004888 + FMA:84793 + T-cytotoxic T cell type 1 + Tc1 CD8+ T cell + Tc1 T cell + Tc1 T lymphocyte + Tc1 T-cell + Tc1 T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'Tc1 CD8+ T cell', but its logical definition includes additional known characteristics of Tc1 T cells. + Tc1 cell + + + + + + true + + + + + A CD8-positive, alpha-beta positive T cell that has the phenotype T-bet-positive, eomesodermin-positive, CXCR3-positive, CCR6-negative, and is capable of producing interferon-gamma. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:22343568 + PMID:9914231 + + + + + Tc1 CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta positive T cell expressing GATA-3 and secreting IL-4. + BTO:0004794 + FMA:84794 + T-cytotoxic T cell type 2 + Tc2 T cell + Tc2 T lymphocyte + Tc2 T-cell + Tc2 T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'non-Tc1/Tc17 CD8+ T cell' (see CL:0001052), but includes the additional necessary and sufficient conditions to allow classification as a Tc2 T cell. + Tc2 cell + + + + + + true + + + + + A CD8-positive, alpha-beta positive T cell expressing GATA-3 and secreting IL-4. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:9914231 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive alpha beta-positive T cell with the phenotype FoxP3-positive and having suppressor function. + CD8+CD25+ T cell + CD8+CD25+ T lymphocyte + CD8+CD25+ T(reg) + CD8+CD25+ T-cell + CD8+CD25+ T-lymphocyte + CD8+CD25+ Treg + CD8-positive, CD25-positive Treg + CD8-positive, CD25-positive, alpha-beta regulatory T lymphocyte + CD8-positive, CD25-positive, alpha-beta regulatory T-cell + CD8-positive, CD25-positive, alpha-beta regulatory T-lymphocyte + cell + CD8-positive, CD25-positive, alpha-beta regulatory T cell + + + + + + true + + + + + A CD8-positive alpha beta-positive T cell with the phenotype FoxP3-positive and having suppressor function. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19118505 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD8-positive, alpha-beta positive regulatory T cell with the phenotype CD28-negative and FoxP3-positive. + CD8+CD28- T cell + CD8+CD28- T lymphocyte + CD8+CD28- T(reg) + CD8+CD28- T-cell + CD8+CD28- T-lymphocyte + CD8+CD28- Treg + CD8-positive, CD28-negative T(reg) + CD8-positive, CD28-negative Treg + CD8-positive, CD28-negative, alpha-beta regulatory T lymphocyte + CD8-positive, CD28-negative, alpha-beta regulatory T-cell + CD8-positive, CD28-negative, alpha-beta regulatory T-lymphocyte + cell + CD8-positive, CD28-negative, alpha-beta regulatory T cell + + + + + + true + + + + + CD8-positive, alpha-beta positive regulatory T cell with the phenotype CD28-negative and FoxP3-positive. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19118505 + + + + + + + + + + + + + + + + + + + + An alpha-beta T cell expressing NK cell markers that is CD1d restricted and expresses specific V-alpha chains. NK T cells of this type recognize the glycolipid alpha-galactosylceramide in the context of CD1d. + classical NK T cell + type I NK T lymphocyte + type I NK T-cell + type I NK T-lymphocyte + type I NKT cell + cell + invariant NK T cell + In mouse the canonical TCR is V-alpha-14, and in humans it is V-alpha 24. + type I NK T cell + + + + + + true + + + + + An alpha-beta T cell expressing NK cell markers that is CD1d restricted and expresses specific V-alpha chains. NK T cells of this type recognize the glycolipid alpha-galactosylceramide in the context of CD1d. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:15039760 + + + + + + + + + + + + + + + + + + + + An alpha-beta T cell expressing NK call markers that is CD1d restricted and expresses a diverse TCR repertoire. Type II NKT cells do not become activated by alpha-galactosylceramide when presented by CD1d. + type II NK T lymphocyte + type II NK T-cell + type II NK T-lymphocyte + type II NKT cell + cell + type II NK T cell + + + + + + true + + + + + An alpha-beta T cell expressing NK call markers that is CD1d restricted and expresses a diverse TCR repertoire. Type II NKT cells do not become activated by alpha-galactosylceramide when presented by CD1d. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:15039760 + + + + + + + + + + + + + + + + + + + + A type I NK T cell that has the phenotype CD4-positive. + CD4-positive type I NK T lymphocyte + CD4-positive type I NK T-cell + CD4-positive type I NK T-lymphocyte + CD4-positive type I NKT cell + NKT.4+.SP + cell + CD4-positive type I NK T cell + + + + + + true + + + + + A type I NK T cell that has the phenotype CD4-positive. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17303398 + + + + + + + + + + + + + + + + + + + + + + + + A type I NK T cell that has the phenotype CD4-negative and CD8-negative. + CD4-negative, CD8-negative type I NK T lymphocyte + CD4-negative, CD8-negative type I NK T-cell + CD4-negative, CD8-negative type I NK T-lymphocyte + CD4-negative, CD8-negative type I NKT cell + NKT.4-.Sp + cell + CD4-negative, CD8-negative type I NK T cell + + + + + + true + + + + + A type I NK T cell that has the phenotype CD4-negative and CD8-negative. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:18997862 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type I NK T cell that has been recently activated, secretes interferon-gamma and IL-4, and has the phenotype CD4-positive, CD69-positive, and downregulated NK markers. + activated CD4-positive type I NK T lymphocyte + activated CD4-positive type I NK T-cell + activated CD4-positive type I NK T-lymphocyte + activated CD4-positive type I NKT cell + cell + activated CD4-positive type I NK T cell + + + + + + true + + + + + A type I NK T cell that has been recently activated, secretes interferon-gamma and IL-4, and has the phenotype CD4-positive, CD69-positive, and downregulated NK markers. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17303398 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature NK T cell that secretes interferon-gamma and enhances type 1 immune responses. + CD4-positive type I NK T cell secreting IFN-gamma + CD4-positive type I NK T lymphocyte secreting interferon-gamma + CD4-positive type I NK T-cell secreting interferon-gamma + CD4-positive type I NK T-lymphocyte secreting interferon-gamma + CD4-positive type I NKT cell secreting interferon-gamma + cell + CD4-positive type I NK T cell secreting interferon-gamma + + + + + + true + + + + + A mature NK T cell that secretes interferon-gamma and enhances type 1 immune responses. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17303398 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature NK T cell that predominantly secretes type 2 cytokines such as interleukin-4 and interleukin-13 and enhances type 2 immune responses. + CD4-positive type I NK T cell secreting IL-4 + CD4-positive type I NK T lymphocyte secreting interleukin-4 + CD4-positive type I NK T-cell secreting interleukin-4 + CD4-positive type I NK T-lymphocyte secreting interleukin-4 + CD4-positive type I NKT cell secreting interleukin-4 + cell + CD4-positive type I NK T cell secreting interleukin-4 + + + + + + true + + + + + A mature NK T cell that predominantly secretes type 2 cytokines such as interleukin-4 and interleukin-13 and enhances type 2 immune responses. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type I NK T cell that has been recently activated, secretes interferon-gamma and interleukin-4, and has phenotype CD4-negative, CD8-negative, CD69-positive, and downregulated NK markers. + activated CD4-negative, CD8-negative type I NK T lymphocyte + activated CD4-negative, CD8-negative type I NK T-cell + activated CD4-negative, CD8-negative type I NK T-lymphocyte + activated CD4-negative, CD8-negative type I NKT cell + cell + activated CD4-negative, CD8-negative type I NK T cell + + + + + + true + + + + + A type I NK T cell that has been recently activated, secretes interferon-gamma and interleukin-4, and has phenotype CD4-negative, CD8-negative, CD69-positive, and downregulated NK markers. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17303398 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature NK T cell that secretes interferon-gamma and enhances Th1 immune responses. + CD4-negative, CD8-negative type I NK T cell secreting IFN-gamma + CD4-negative, CD8-negative type I NK T lymphocyte secreting interferon-gamma + CD4-negative, CD8-negative type I NK T-cell secreting interferon-gamma + CD4-negative, CD8-negative type I NK T-lymphocyte secreting interferon-gamma + CD4-negative, CD8-negative type I NKT cell secreting interferon-gamma + cell + CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma + + + + + + true + + + + + A mature NK T cell that secretes interferon-gamma and enhances Th1 immune responses. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17303398 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature NK T cell that secretes interleukin-4 and enhances Th2 immune responses. + CD4-negative, CD8-negative type I NK T cell secreting IL-4 + CD4-negative, CD8-negative type I NK T lymphocyte secreting interleukin-4 + CD4-negative, CD8-negative type I NK T-cell secreting interleukin-4 + CD4-negative, CD8-negative type I NK T-lymphocyte secreting interleukin-4 + CD4-negative, CD8-negative type I NKT cell secreting interleukin-4 + cell + CD4-negative, CD8-negative type I NK T cell secreting interleukin-4 + + + + + + true + + + + + A mature NK T cell that secretes interleukin-4 and enhances Th2 immune responses. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17303398 + + + + + + + + + + + + + + + + + + + + + + + + A type II NK T cell that has been recently activated, secretes interferon-gamma and interleukin-4, and has the phenotype CD69-positive and downregulated NK markers. + activated type II NK T lymphocyte + activated type II NK T-cell + activated type II NK T-lymphocyte + activated type II NKT cell + cell + activated type II NK T cell + + + + + + true + + + + + A type II NK T cell that has been recently activated, secretes interferon-gamma and interleukin-4, and has the phenotype CD69-positive and downregulated NK markers. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17964217 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type II NK T cell that has been recently activated, secretes interferon-gamma, and has the phenotype CD69-positive and downregulated NK markers. + type II NK T cell secreting IFN-gamma + type II NK T lymphocyte secreting interferon-gamma + type II NK T-cell secreting interferon-gamma + type II NK T-lymphocyte secreting interferon-gamma + type II NKT cell secreting interferon-gamma + cell + type II NK T cell secreting interferon-gamma + + + + + + true + + + + + A type II NK T cell that has been recently activated, secretes interferon-gamma, and has the phenotype CD69-positive and downregulated NK markers. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:17964217 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type II NK T cell that has been recently activated, secretes interleukin-4, and has the phenotype CD69-positive and downregulated NK markers. + type II NK T cell secreting IL-4 + type II NK T lymphocyte secreting interleukin-4 + type II NK T-cell secreting interleukin-4 + type II NK T-lymphocyte secreting interleukin-4 + type II NKT cell secreting interleukin-4 + cell + type II NK T cell secreting interleukin-4 + + + + + + true + + + + + A type II NK T cell that has been recently activated, secretes interleukin-4, and has the phenotype CD69-positive and downregulated NK markers. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:17964217 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell that has cytotoxic function. + CD4-positive, alpha-beta cytotoxic T lymphocyte + CD4-positive, alpha-beta cytotoxic T-cell + CD4-positive, alpha-beta cytotoxic T-lymphocyte + cell + CD4-positive, alpha-beta cytotoxic T cell + + + + + + true + + + + + A CD4-positive, alpha-beta T cell that has cytotoxic function. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:18440213 + + + + + + + + + + + + + + + + + + + + + + + + A CD4-negative, CD8-negative, alpha-beta intraepithelial T cell that is found in the columnar epithelium of the gastrointestinal tract. + CD4-negative, CD8-negative, alpha-beta intraepithelial T lymphocyte + CD4-negative, CD8-negative, alpha-beta intraepithelial T-cell + CD4-negative, CD8-negative, alpha-beta intraepithelial T-lymphocyte + cell + CD4-negative, CD8-negative, alpha-beta intraepithelial T cell + + + + + + true + + + + + A CD4-negative, CD8-negative, alpha-beta intraepithelial T cell that is found in the columnar epithelium of the gastrointestinal tract. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:11685222 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphoid progenitor cell that is found in bone marrow, gives rise to B cells, T cells, natural killer cells and dendritic cells, and has the phenotype Lin-negative, Kit-positive, Sca-1-positive, FLT3-positive, CD34-positive, CD150 negative, and GlyA-negative. + ELP + LMPP + lymphoid-primed multipotent progenitor + cell + GMLP + Markers are associated with mouse cells. ELP transcription factors include E2A-positive, Ikaros-positive, EBF-negative, Pax5-negative, PU.1-negative. + early lymphoid progenitor + + + + + + true + + + + + A lymphoid progenitor cell that is found in bone marrow, gives rise to B cells, T cells, natural killer cells and dendritic cells, and has the phenotype Lin-negative, Kit-positive, Sca-1-positive, FLT3-positive, CD34-positive, CD150 negative, and GlyA-negative. + GOC:add + GOC:dsd + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19022770 + + + + + GMLP + PMID:18371378 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Cell committed to natural killer cell lineage that has the phenotype CD122-positive, CD34-positive, and CD117-positive. This cell type lacks expression of natural killer receptor proteins. + pre-NK cell + cell + These cells are also reportedly CD7-low, CD10-negative, CD45RA-positive, alpha-4-beta-7 integrin-high. + pre-natural killer cell + + + + + + true + + + + + Cell committed to natural killer cell lineage that has the phenotype CD122-positive, CD34-positive, and CD117-positive. This cell type lacks expression of natural killer receptor proteins. + GOC:add + GOC:dsd + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:16551251 + PMID:17100874 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + NK cell that has the phenotype CD56-bright, CD16-negative, and CD84-positive with the function to secrete interferon-gamma but is not cytotoxic. + CD16-CD56bright NK cell + CD16-negative, CD56-bright NK cell + CD56-bright cytokine secreting NK cell + CD56-bright cytokine secreting natural killer cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'CD16-CD56bright NK cell'. Markers are associated with human cell types. + CD16-negative, CD56-bright natural killer cell + + + + + + true + + + + + NK cell that has the phenotype CD56-bright, CD16-negative, and CD84-positive with the function to secrete interferon-gamma but is not cytotoxic. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19796267 + PMID:22343568 + + + + + CD16-CD56bright NK cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature natural killer cell that has the phenotype CD56-low, CD16-positive and which is capable of cytotoxicity and cytokine production. + CD16+CD56+ NK cell + CD16-positive, CD56-dim NK cell + CD16-positive, CD56-low NK cell + CD16-positive, CD56-low natural killer cell + CD16-positive, CD56-positive NK cell + CD16-positive, CD56-positive natural killer cell + cytotoxic CD56-dim NK cell + cytotoxic CD56-dim natural killer cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'CD16+CD56+ NK cell'. Markers are associated with human cell types. + CD16-positive, CD56-dim natural killer cell + + + + + + true + + + + + A mature natural killer cell that has the phenotype CD56-low, CD16-positive and which is capable of cytotoxicity and cytokine production. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:19796267 + PMID:22343568 + + + + + CD16+CD56+ NK cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + An alpha-beta T cell that is found in the lamina propria of mucosal tissues and is restricted by the MR-1 molecule. + mucosal invariant T lymphocyte + mucosal invariant T-cell + mucosal invariant T-lymphocyte + cell + mucosal invariant T cell + + + + + + true + + + + + An alpha-beta T cell that is found in the lamina propria of mucosal tissues and is restricted by the MR-1 molecule. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19416870 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A dendritic cell arising in thymus that has the phenotype CD11c-positive, CD11b-negative, and CD45RA-negative. + cell + In the mouse this cell expresses CD8-alpha-alpha. + thymic conventional dendritic cell + + + + + + true + + + + + A dendritic cell arising in thymus that has the phenotype CD11c-positive, CD11b-negative, and CD45RA-negative. + GOC:add + GOC:pam + GO_REF:0000031 + PMID:19273629 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A plasmacytoid dendritic cell developing in the thymus with phenotype CD11c-negative or low, CD45RA-positive, CD11b-negative, and CD123-positive. + cell + thymic plasmacytoid dendritic cell + + + + + + true + + + + + A plasmacytoid dendritic cell developing in the thymus with phenotype CD11c-negative or low, CD45RA-positive, CD11b-negative, and CD123-positive. + GOC:add + GOC:pam + GOC:tfm + GO_REF:0000031 + PMID:19941119 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A Be cell that facilitates development of T-helper 1 (Th1) phenotype in CD4-positive T cells, and secretes high levels of interleukin-2, tumor necrosis factor-alpha and interferon-gamma. + B effector 1 cell + cell + B effector cell type 1 + Be1 cells are also reportedly capable of secreting IL-6, IL-10, and IL-12. They are also reportedly CD11b-negative and B220-positive. + Be1 Cell + + + + + + true + + + + + A Be cell that facilitates development of T-helper 1 (Th1) phenotype in CD4-positive T cells, and secretes high levels of interleukin-2, tumor necrosis factor-alpha and interferon-gamma. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:11101868 + PMID:20224569 + + + + + B effector 1 cell + PMID:11101868 + PMID:20224569 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A Be cell that facilitates development of T-helper 2 (Th2) phenotype T cells, and secretes high levels of interleukin-2, interleukin-10, interleukin-4, and interleukin-6. + B effector 2 cell + cell + B effector cell type 2 + Be2 cells are also reportedly capable of secreting IL-13 and TNF. They are also reportedly CD11b-negative and B220-positive. + Be2 cell + + + + + + true + + + + + A Be cell that facilitates development of T-helper 2 (Th2) phenotype T cells, and secretes high levels of interleukin-2, interleukin-10, interleukin-4, and interleukin-6. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:11101868 + PMID:20224569 + + + + + B effector 2 cell + PMID:11101868 + PMID:20224569 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex. + cell + Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells). Lymphocytes of B cell lineage can be distinguished from those of T cell lineage by their lack of CD3e (as part of the T cell receptor complex). + lymphocyte of B lineage + + + + + + true + + + + + A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex. + GOC:add + GOC:rhs + GOC:tfm + GO_REF:0000031 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A lymphocyte of B lineage that is devoted to secreting large amounts of immunoglobulin. + cell + antibody secreting cell + + + + + + true + + + + + A lymphocyte of B lineage that is devoted to secreting large amounts of immunoglobulin. + GOC:add + GOC:tfm + GO_REF:0000031 + ISBN:0721601464 + ISBN:0781735149 + + + + + + + + + + + + + + + + + + + + A long lived plasma cell that secretes IgE. + cell + IgE plasma cell + + + + + + true + + + + + A long lived plasma cell that secretes IgE. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + A class switched memory B cell that expresses IgE on the cell surface. + IgE memory B lymphocyte + IgE memory B-cell + IgE memory B-lymphocyte + memory IgE B cell + memory IgE B lymphocyte + memory IgE B-cell + memory IgE B-lymphocyte + cell + IgE memory B cell + + + + + + true + + + + + A class switched memory B cell that expresses IgE on the cell surface. + GOC:rhs + GO_REF:0000031 + ISBN:0781765196 + + + + + + + + + + + + + + + + + + + + A plasmablast that secretes IgD, and which occur in a small proportion of B cells in the adult. + cell + IgD plasmablast + + + + + + true + + + + + A plasmablast that secretes IgD, and which occur in a small proportion of B cells in the adult. + GOC:msz + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + A plasmablast that secretes IgE. + cell + IgE plasmablast + + + + + + true + + + + + A plasmablast that secretes IgE. + GOC:msz + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + A short lived plasma cell that secretes IgE. + cell + IgE short lived plasma cell + + + + + + true + + + + + A short lived plasma cell that secretes IgE. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An preBRC-positive large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-positive, composed of surrogate light chain protein (SL), which is composed of VpreB , Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu) on the cell surface. + cell + preBCR-positive large pre-B-II cell + + + + + + true + + + + + An preBRC-positive large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-positive, composed of surrogate light chain protein (SL), which is composed of VpreB , Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu) on the cell surface. + GOC:rhs + GOC:tfm + GO_REF:0000031 + PMID:9785673 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-BCR-negative large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-negative, composed of surrogate light chain protein (SL), which is composed of VpreB and Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu), on the cell surface, and lack a DNA rearrangement of immunoglobulin light chain genes. + cell + preBCR-negative large pre-B-II cell + + + + + + true + + + + + A pre-BCR-negative large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-negative, composed of surrogate light chain protein (SL), which is composed of VpreB and Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu), on the cell surface, and lack a DNA rearrangement of immunoglobulin light chain genes. + GOC:rhs + GOC:tfm + GO_REF:0000031 + PMID:9785673 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A small pre-B-II cell is a pre-B-II cell that is Rag1-positive, Rag2-positive, pre-BCR-negative, and BCR-negative, is not proliferating, and carries a DNA rearrangement of one or more immunoglobulin light chain genes. + small pre-BII cell + cell + Small pre-B-II cells are also reportedly CD10-positive, CD19-positive, CD34-negative, CD79a-positive, CD127-negative, TdT-negative, Vpre-B-negative, sIgM-negative, and sIgD-negative. Transcription factors: PU.1-positive, Ikaros-positive, E2A-positive, and PAX5-positive. + small pre-B-II cell + + + + + + true + + + + + A small pre-B-II cell is a pre-B-II cell that is Rag1-positive, Rag2-positive, pre-BCR-negative, and BCR-negative, is not proliferating, and carries a DNA rearrangement of one or more immunoglobulin light chain genes. + GOC:dsd + GOC:rhs + GOC:tfm + GO_REF:0000031 + PMID:16551251 + PMID:18432934 + PMID:9785673 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain. + BTO:0001133 + CALOHA:TS-0819 + pre-B-lymphocyte + pre-BII cell + cell + pre-B-II cell are also reportedly CD19-positive, CD22-positive, CD38-positive, CD45-positive, and CD48-positive. + pre-B-II cell + + + + + + true + + + + + A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain. + GOC:dsd + GOC:rhs + GOC:tfm + GO_REF:0000031 + PMID:9785673 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-B-I cell is a precursor B cell that expresses CD34 and surrogate immunoglobulin light chain (VpreB , Lambda 5 (mouse)/14.1 (human)) on the cell surface, and TdT, Rag1,and Rag2 intracellularly. Cell type carries a D-JH DNA rearrangement, and lacks expression of immunglobulin heavy chain protein. + pre-BI cell + cell + pro-B cell (Philadelphia nomenclature) + Human pre-B-I cells are reportedly CD10-positive, CD19-positive, CD22-positive, CD38-positive, CD45-low, CD79a-positive, CD127-negative, pre-BCR-negative, IgM-negative, IgD-negative, and Tdt-positive. Transcription factors expressed: Pax5-positive. + pre-B-I cell + + + + + + true + + + + + A pre-B-I cell is a precursor B cell that expresses CD34 and surrogate immunoglobulin light chain (VpreB , Lambda 5 (mouse)/14.1 (human)) on the cell surface, and TdT, Rag1,and Rag2 intracellularly. Cell type carries a D-JH DNA rearrangement, and lacks expression of immunglobulin heavy chain protein. + GOC:dsd + GOC:rhs + GOC:tfm + GO_REF:0000031 + PMID:16551251 + PMID:18432934 + PMID:20839338 + PMID:9785673 + + + + + pro-B cell (Philadelphia nomenclature) + PMID:11244048 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A large pre-B-II cell is a pre-B-II cell that is proliferating and is Rag1-negative and Rag2-negative. + large pre-B cell + large pre-BII cell + cell + Large pre-B-II cells are also reportedly CD10-positive, CD19-positive, CD34-negative, CD79a-positive, CD127-negative, TdT-negative, Vpre-B-positive, pre-BCR-positive, sIgM-negative, and sIgD-negative. Transcription factors: PU.1-positive, Ikaros-positive, E2A-positive, and PAX5-positive. + large pre-B-II cell + + + + + + true + + + + + A large pre-B-II cell is a pre-B-II cell that is proliferating and is Rag1-negative and Rag2-negative. + GOC:dsd + GOC:rhs + GO_REF:0000031 + PMID:16551251 + PMID:18432934 + PMID:9785673 + + + + + large pre-B cell + PMID:11244048 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A transitional stage B cell that migrates from the bone marrow into the peripheral circulation, and finally to the spleen. This cell type has the phenotype surface IgM-positive, surface IgD-negative, CD21-negative, CD23-negative, and CD62L-negative, and CD93-positive. This cell type has also been described as IgM-high, CD19-positive, B220-positive, AA4-positive, and CD23-negative. + T1 B lymphocyte + T1 B-cell + T1 B-lymphocyte + transitional stage 1 B cell + cell + T1 B cells are also reportedly CD10-negative/positive??, CD20-positive, CD24-positive, CD38-positive, CD48-positive, CD84-positive, CD150-positive, CD244-negative, and CD352-positive. + T1 B cell + + + + + + true + + + + + A transitional stage B cell that migrates from the bone marrow into the peripheral circulation, and finally to the spleen. This cell type has the phenotype surface IgM-positive, surface IgD-negative, CD21-negative, CD23-negative, and CD62L-negative, and CD93-positive. This cell type has also been described as IgM-high, CD19-positive, B220-positive, AA4-positive, and CD23-negative. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMCID:PMC2193793 + PMID:12810111 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A transitional stage B cell that has the phenotype surface IgM-positive, surface IgD-postive, CD21-positive, CD23-positive, CD62L-negative, CD93-positive and is located in the splenic B follicles. This cell type has also been described as IgM-high, CD19-positive, B220-positive, AA4-positive, and CD23-positive. + T2 B lymphocyte + T2 B-cell + T2 B-lymphocyte + transitional stage 2 B cell + cell + T2 B cells are also reportedly CD20-positive, CD24-positive, CD38-positive, CD48-positive, CD84-positive, CD150-positive, CD244-negative, and CD352-positive. + T2 B cell + + + + + + true + + + + + A transitional stage B cell that has the phenotype surface IgM-positive, surface IgD-postive, CD21-positive, CD23-positive, CD62L-negative, CD93-positive and is located in the splenic B follicles. This cell type has also been described as IgM-high, CD19-positive, B220-positive, AA4-positive, and CD23-positive. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMCID:PMC2193793 + PMID:12810111 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A transitional stage B cell that expresses surface IgM and IgD, and CD62L. This cell type appears to be an anergic B cell that does not proliferate upon BCR signaling, is found in the spleen and lymph nodes, and has the phenotype surface IgM-positive, surface IgD-positive, CD21-positive, CD23-positive, CD62L-positive, and CD93-positive. This cell type has also been described as IgM-low, CD19-positive, B220-positive, AA4-positive, and CD23-positive (i.e. this cell-type is distinguished from T2 cells by surface expression of IgM). + An1 B cell + T3 B lymphocyte + T3 B-cell + T3 B-lymphocyte + transitional stage 3 B cell + cell + T3 B cell + + + + + + true + + + + + A transitional stage B cell that expresses surface IgM and IgD, and CD62L. This cell type appears to be an anergic B cell that does not proliferate upon BCR signaling, is found in the spleen and lymph nodes, and has the phenotype surface IgM-positive, surface IgD-positive, CD21-positive, CD23-positive, CD62L-positive, and CD93-positive. This cell type has also been described as IgM-low, CD19-positive, B220-positive, AA4-positive, and CD23-positive (i.e. this cell-type is distinguished from T2 cells by surface expression of IgM). + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:12810111 + PMID:17174121 + http://www.immgen.org/index_content.html + + + + + An1 B cell + PMID:17174121 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A follicular B cell that is IgD-positive, CD23-negative, and CD38-negative. This naive cell type is activated in the extrafollicular areas through interaction with interdigitating dendritic cells and antigen-specific CD4-positive T cells. + Bm1 B lymphocyte + Bm1 B-cell + Bm1 B-lymphocyte + cell + These cells are also reportedly CD10-negative, CD39-positive, CD44-positive, CD71-negative, CD77-negative, IgM-positive, IgG-negative, IgA-negative, and IgE-negative. + Bm1 B cell + + + + + + true + + + + + A follicular B cell that is IgD-positive, CD23-negative, and CD38-negative. This naive cell type is activated in the extrafollicular areas through interaction with interdigitating dendritic cells and antigen-specific CD4-positive T cells. + GOC:dsd + GOC:msz + GO_REF:0000031 + PMID:17992590 + PMID:18432934 + PMID:8006591 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A follicular B cell that is IgD-positive and CD23-positive and CD38-positive. This naive cell type is activated in the extrafollicular areas via interaction with dendritic cells and antigen specific T cells. + Bm2 B lymphocyte + Bm2 B-cell + Bm2 B-lymphocyte + cell + These cells are also CD10-negative, CD39-positive, CD44-positive, CD71-negative, CD77-negative, IgM-positive, IgG-negative, IgA-negative, and IgE-negative. + Bm2 B cell + + + + + + true + + + + + A follicular B cell that is IgD-positive and CD23-positive and CD38-positive. This naive cell type is activated in the extrafollicular areas via interaction with dendritic cells and antigen specific T cells. + GOC:dsd + GOC:msz + GO_REF:0000031 + PMID:17992590 + PMID:18432934 + PMID:8006591 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A germinal center B cell that develops from a Bm3 B cell. This cell has the phenotype IgM-negative, IgD-positive, and CD38-positive. + Bm3-delta B lymphocyte + Bm3-delta B-cell + Bm3-delta B-lymphocyte + cell + Bm3-delta B cell + + + + + + true + + + + + A germinal center B cell that develops from a Bm3 B cell. This cell has the phenotype IgM-negative, IgD-positive, and CD38-positive. + GOC:add + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:9280752 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A germinal center B cell that founds a germinal center, and has the phenotype IgD-positive, CD38-positive, and CD23-negative. + Bm2' B lymphocyte + Bm2' B-cell + Bm2' B-lymphocyte + Bm2-prime B cell + Bm2-prime B lymphocyte + Bm2-prime B-cell + Bm2-prime B-lymphocyte + cell + germinal center founder cell + Bm2' B cells are also reportedly CD10-positive, CD39-negative, CD44-negative, CD71-positive, CD77-negative, IgM-positive, IgG-negative, IgA-negative, and IgE-negative. + Bm2' B cell + + + + + + true + + + + + A germinal center B cell that founds a germinal center, and has the phenotype IgD-positive, CD38-positive, and CD23-negative. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:17992590 + PMID:18432934 + PMID:8006591 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A germinal center B cell that is rapidly dividing and has the phenotype IgD-negative, CD38-positive, and CD77-positive. Somatic hypermutation of the immunoglobulin V gene region can occur during proliferation of this cell type. + Bm3 B lymphocyte + Bm3 B-cell + Bm3 B-lymphocyte + cell + centroblast + Bm3 B cells are also reportedly CD10-positive, CD23-negative, CD39-negative, CD44-negative, CD71-positive, and CD77-positive. + Bm3 B cell + + + + + + true + + + + + A germinal center B cell that is rapidly dividing and has the phenotype IgD-negative, CD38-positive, and CD77-positive. Somatic hypermutation of the immunoglobulin V gene region can occur during proliferation of this cell type. + GOC:dsd + GOC:msz + GO_REF:0000031 + PMID:18432934 + PMID:8006591 + + + + + centroblast + PMID:8006591 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A germinal center B cell that has the phenotype CD77-negative, IgD-negative, and CD38-positive. These cells have undergone somatic mutation of the B cell receptor. + Bm4 B lymphocyte + Bm4 B-cell + Bm4 B-lymphocyte + cell + centrocyte + Bm4 B cells are also reportedly CD10-positive, CD23-negative, CD39-negative, CD44-positive, and CD71-positive. + Bm4 B cell + + + + + + true + + + + + A germinal center B cell that has the phenotype CD77-negative, IgD-negative, and CD38-positive. These cells have undergone somatic mutation of the B cell receptor. + GOC:dsd + GOC:msz + GO_REF:0000031 + PMID:18432934 + PMID:8006591 + + + + + centrocyte + PMID:17992590 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A memory B cell arising in the germinal center that is IgD-negative and has undergone somatic mutation of the variable region of the immunoglobulin heavy and light chain genes. + Bm5 B lymphocyte + Bm5 B-cell + Bm5 B-lymphocyte + cell + Bm5 B cells are also reportedly CD10-positive, CD23-negative, CD38-negative, CD39-positive, CD44-positive, CD71-positive, and CD77-negative. + Bm5 B cell + + + + + + true + + + + + A memory B cell arising in the germinal center that is IgD-negative and has undergone somatic mutation of the variable region of the immunoglobulin heavy and light chain genes. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:18432934 + PMID:8006591 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature B cell that produces cytokines that can influence CD4 T cell differentiation. + B effector cell + effector B cell + effector B lymphocyte + effector B-cell + effector B-lymphocyte + cell + Be cell + + + + + + true + + + + + A mature B cell that produces cytokines that can influence CD4 T cell differentiation. + GOC:msz + GOC:tfm + GO_REF:0000031 + PMID:11101868 + PMID:20224569 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature B cell that has the phenotype CD1d-positive and expresses interleukin-10. This cell type has been associated with suppression of chronic inflammatory responses and T cell responses. + B(reg) + B10 cell + Breg + regulatory B lymphocyte + regulatory B-cell + regulatory B-lymphocyte + cell + Regulatory B cells reportedly represent 1-2% of the spleen and 7-8% of the peritoneal B220-positive cells in mice. They are also found in the bone marrow, lymph node, and blood of mice. These cells are also reportedly capable of secreting IL-10 and are reportedly CD5-positive, CD21-positive, CD24-positive, CD93-negative, B220-positive, IgM-positive, and IgD-positive. + regulatory B cell + + + + + + true + + + + + A mature B cell that has the phenotype CD1d-positive and expresses interleukin-10. This cell type has been associated with suppression of chronic inflammatory responses and T cell responses. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + MESH:D060151 + PMID:11869683 + PMID:18482568 + PMID:20224569 + PMID:20809522 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An unswitched memory B cell is a memory B cell that has the phenotype IgM-positive, IgD-positive, CD27-positive, CD138-negative, IgG-negative, IgE-negative, and IgA-negative. + IgD+ memory B cell + unswitched memory B lymphocyte + unswitched memory B-cell + unswitched memory B-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'IgD+ memory B cell'. Per DSD: Unswitched memory B cells are also reportedly CD48-positive, CD84-positive, CD229-positive, and CD352-positive. + unswitched memory B cell + + + + + + true + + + + + An unswitched memory B cell is a memory B cell that has the phenotype IgM-positive, IgD-positive, CD27-positive, CD138-negative, IgG-negative, IgE-negative, and IgA-negative. + GOC:add + GOC:dsd + GOC:rhs + GO_REF:0000031 + ISBN:0781765196 + PMID:20933013 + PMID:22343568 + + + + + IgD+ memory B cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + An IgM memory B cell is an unswitched memory B cell with the phenotype IgM-positive and IgD-negative. + IgM memory B lymphocyte + IgM memory B-cell + IgM memory B-lymphocyte + memory IgM B cell + memory IgM B lymphocyte + memory IgM B-cell + memory IgM B-lymphocyte + cell + IgM memory B cells are also reportedly CD1c-positive, CD95-positive, CD80-positive, CD84-positive, CD86-positive, CD150-negative, CD229-positive, CD289-positive, and CD290-positive. Transcription factors: Notch2-positive, PAX5-positive, SpiB-positive, Ets1-positive, and OBF1-positive. + IgM memory B cell + + + + + An IgM memory B cell is an unswitched memory B cell with the phenotype IgM-positive and IgD-negative. + GOC:dsd + GOC:rhs + GO_REF:0000031 + ISBN:0781765196 + PMID:19447676 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A class switched memory B cell is a memory B cell that has undergone Ig class switching and therefore is IgM-negative on the cell surface. These cells are CD27-positive and have either IgG, IgE, or IgA on the cell surface. + class switched memory B lymphocyte + class switched memory B-cell + class switched memory B-lymphocyte + cell + Per DSD: Class switched memory B cells are also reportedly CD48-positive, CD229-positive, and CD352-positive. + class switched memory B cell + + + + + + true + + + + + A class switched memory B cell is a memory B cell that has undergone Ig class switching and therefore is IgM-negative on the cell surface. These cells are CD27-positive and have either IgG, IgE, or IgA on the cell surface. + GOC:add + GOC:dsd + GOC:rhs + GO_REF:0000031 + ISBN:0781765196 + PMID:20933013 + PMID:9295047 + + + + + + + + + + + + + + + + + + + + A class switched memory B cell that expresses IgA. + IgA memory B lymphocyte + IgA memory B-cell + IgA memory B-lymphocyte + memory IgA B cell + memory IgA B lymphocyte + memory IgA B-cell + memory IgA B-lymphocyte + cell + IgA memory B cell are also reportedly RORalpha-positive. + IgA memory B cell + + + + + + true + + + + + A class switched memory B cell that expresses IgA. + GOC:dsd + GOC:msz + GO_REF:0000031 + ISBN:0781765196 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A fully differentiated plasma cell that lives for years, as opposed to months, secretes immunoglobulin, and has the phenotype weakly CD19-positive, CD20-negative, CD38-negative, strongly CD138-positive, MHC Class II-negative, surface immunoglobulin-negative, IgD-negative, and strongly CXCR4-positive. The majority of these cells of this type reside in the bone marrow. + cell + long lived plasma cell + + + + + + true + + + + + A fully differentiated plasma cell that lives for years, as opposed to months, secretes immunoglobulin, and has the phenotype weakly CD19-positive, CD20-negative, CD38-negative, strongly CD138-positive, MHC Class II-negative, surface immunoglobulin-negative, IgD-negative, and strongly CXCR4-positive. The majority of these cells of this type reside in the bone marrow. + GOC:msz + GOC:tfm + GO_REF:0000031 + ISBN:9780781765190 + PMID:16014527 + + + + + + + + + + + + + + + + + + + + + + + + + + A fully differentiated plasma cell that lives for months. + cell + short lived plasma cell + + + + + + true + + + + + A fully differentiated plasma cell that lives for months. + GOC:msz + GO_REF:0000031 + PMID:16014527 + + + + + + + + + + + + + + + + + + + + A short lived plasma cell that secretes IgA. These cells may be found in the bone marrow as well as in the mucosal immune system. + cell + IgA short lived plasma cell + + + + + + true + + + + + A short lived plasma cell that secretes IgA. These cells may be found in the bone marrow as well as in the mucosal immune system. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + A short lived plasma cell that secretes IgG. + cell + IgG short lived plasma cell + + + + + + true + + + + + A short lived plasma cell that secretes IgG. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + A short lived plasma cell that secretes IgM. + cell + IgM short lived plasma cell + + + + + + true + + + + + A short lived plasma cell that secretes IgM. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + An IgG memory B cell is a class switched memory B cell that is class switched and expresses IgG on the cell surface. + IgG memory B lymphocyte + IgG memory B-cell + IgG memory B-lymphocyte + memory IgG B cell + memory IgG B lymphocyte + memory IgG B-cell + memory IgG B-lymphocyte + cell + IgG memory B cell + + + + + + true + + + + + An IgG memory B cell is a class switched memory B cell that is class switched and expresses IgG on the cell surface. + GOC:rhs + GO_REF:0000031 + ISBN:0781765196 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An activated mature (naive or memory) B cell that is secreting immunoglobulin, typified by being CD27-positive, CD38-positive, CD138-negative. + FMA:84371 + cell + This cell type is compatible with the HIPC Lyoplate markers for 'plasmablast'. Plasmablasts are also reportedly CD48-positive, CD63-positive, CD229-positive, CD270-positive, CD319-positive, CD352-positive, CD361-positive, and IgD-negative. + plasmablast + + + + + + true + + + + + An activated mature (naive or memory) B cell that is secreting immunoglobulin, typified by being CD27-positive, CD38-positive, CD138-negative. + GOC:dsd + GOC:msz + GOC:tfm + GO_REF:0000031 + PMCID:PMC2673126 + + + + + + + + + + + + + + + + + + + + + + + + A memory B cell with the phenotype IgD-negative and CD27-negative. + dn memory B cell + dn memory B lymphocyte + dn memory B-cell + dn memory B-lymphocyte + double negative memory B lymphocyte + double negative memory B-cell + double negative memory B-lymphocyte + cell + double negative memory B cell + + + + + + true + + + + + A memory B cell with the phenotype IgD-negative and CD27-negative. + GOC:msz + GOC:tfm + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + A plasmablast that secretes IgG. + cell + IgG plasmablast + + + + + + true + + + + + A plasmablast that secretes IgG. + GOC:msz + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + A plasmablast that secretes IgM. + cell + IgM plasmablast + + + + + + true + + + + + A plasmablast that secretes IgM. + GOC:msz + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + A plasmablast that secretes IgA. + cell + IgA plasmablast + + + + + + true + + + + + A plasmablast that secretes IgA. + GOC:msz + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + A fully differentiated plasma cell that secretes IgG. + cell + IgG plasma cell + + + + + + true + + + + + A fully differentiated plasma cell that secretes IgG. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + A fully differentiated plasma cell that secretes IgM. + cell + IgM plasma cell + + + + + + true + + + + + A fully differentiated plasma cell that secretes IgM. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + + + + + + + + + + + A fully differentiated plasma cell that secretes IgA. + cell + IgA plasma cell + + + + + + true + + + + + A fully differentiated plasma cell that secretes IgA. + GOC:msz + GO_REF:0000031 + ISBN:781735149 + + + + + + + + + + A cell of a hematopoietic lineage. + BTO:0000574 + CALOHA:TS-2017 + FMA:70366 + FMA:83598 + haematopoietic cell + haemopoietic cell + hemopoietic cell + cell + hematopoietic cell + + + + + A cell of a hematopoietic lineage. + GOC:add + GO_REF:0000031 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD11c-low plasmacytoid dendritic cell is a leukocyte that is CD11c-low, CD45R-positive, GR1-positive and CD11b-negative. + cell + Originally described in the dendritic cell ontology (DC_CL:0000001)(PMID:19243617). These cells are CD281-positive (TLR1), CD282-positive (TLR2), CD285-positive (TLR5), CD286-positive (TLR6), and CD288-positive (TLR8). + CD11c-low plasmacytoid dendritic cell + + + + + + true + + + + + CD11c-low plasmacytoid dendritic cell is a leukocyte that is CD11c-low, CD45R-positive, GR1-positive and CD11b-negative. + GOC:amm + GOC:dsd + GO_REF:0000031 + PMID:15771572 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + Conventional dendritic cell is a dendritic cell that is CD11c-high. + interdigitating cell + veiled cell + FMA:84191 + DC1 + cDC + dendritic reticular cell + type 1 DC + cell + Originally described in the dendritic cell ontology (DC_CL:0000003)(PMID:19243617) These cells are also CD20-negative, MHCII-positive. + conventional dendritic cell + + + + + + true + + + + + Conventional dendritic cell is a dendritic cell that is CD11c-high. + GOC:amm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD11c-negative plasmacytoid dendritic cell is a leukocyte is CD11c-negative, CD45RA-positive, CD85g-positive(ILT7), CD123-positive, CD303-positive. + CD303-positive dendritic cell + cell + Originally described in the dendritic cell ontology (DC_CL:0000004)(PMID:19243617). These cells are CD281-positive (TLR1), CD286-positive (TLR6), and CD290-positive (TLR10). + CD11c-negative plasmacytoid dendritic cell + + + + + + true + + + + + CD11c-negative plasmacytoid dendritic cell is a leukocyte is CD11c-negative, CD45RA-positive, CD85g-positive(ILT7), CD123-positive, CD303-positive. + GOC:amm + GO_REF:0000031 + PMID:15771572 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD11c-low plasmacytoid dendritic cell is a CD11c-low plasmacytoid dendritic cell that is CD80-low and CD86-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000006)(PMID:19243617). + immature CD11c-low plasmacytoid dendritic cell + + + + + + true + + + + + Immature CD11c-low plasmacytoid dendritic cell is a CD11c-low plasmacytoid dendritic cell that is CD80-low and CD86-low. + GOC:amm + GO_REF:0000031 + PMID:15771572 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD11c-low plasmacytoid dendritic cell is a CD11c-low plasmacytoid dendritic cell that is CD83-high and is CD80-positive, CD86-positive, and MHCII-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000007)(PMID:19243617). + mature CD11c-low plasmacytoid dendritic cell + + + + + + true + + + + + Mature CD11c-low plasmacytoid dendritic cell is a CD11c-low plasmacytoid dendritic cell that is CD83-high and is CD80-positive, CD86-positive, and MHCII-positive. + GOC:amm + GO_REF:0000031 + PMID:15771572 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD11c-negative plasmacytoid dendritic cell is a CD11c-negative plasmacytoid dendritic cell is CD80-negative, CD86-low and MHCII-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000008)(PMID:19243617). + immature CD11c-negative plasmacytoid dendritic cell + + + + + + true + + + + + Immature CD11c-negative plasmacytoid dendritic cell is a CD11c-negative plasmacytoid dendritic cell is CD80-negative, CD86-low and MHCII-low. + GOC:amm + GO_REF:0000031 + PMID:15771572 + PMID:17850486 + + + + + + + + + + + + + + + + + CD71-positive common myeloid precursor OR CD7-negative lymphoid precursor OR CD7-positive lymphoid + cell + Originally described in the dendritic cell ontology (DC_CL:1100000)(PMID:19243617). + CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD11c-negative plasmacytoid dendritic cell is a CD11c-negative plasmacytoid dendritic cell is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000009)(PMID:19243617). + mature CD11c-negative plasmacytoid dendritic cell + + + + + + true + + + + + Mature CD11c-negative plasmacytoid dendritic cell is a CD11c-negative plasmacytoid dendritic cell is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GO_REF:0000031 + PMID:15771572 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD8_alpha-negative CD11b-positive dendritic cell is a CD8_alpha-negative CD11b-positive dendritic cell that is CD80-low, CD86-low, and MHCII-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000010)(PMID:19243617). + immature CD8_alpha-negative CD11b-positive dendritic cell + + + + + + true + + + + + Immature CD8_alpha-negative CD11b-positive dendritic cell is a CD8_alpha-negative CD11b-positive dendritic cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD8_alpha-negative CD11b-negative dendritic cell is a conventional dendritic cell that is CD11b-negative, CD4-negative CD8_alpha-negative and is CD205-positive. This cell is able to cross- present antigen to CD8-alpha-positive T cells. + DC.8-4-11b- + triple negative dendritic cell + cell + These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000011)(PMID:19243617). + CD8_alpha-negative CD11b-negative dendritic cell + + + + + + true + + + + + CD8_alpha-negative CD11b-negative dendritic cell is a conventional dendritic cell that is CD11b-negative, CD4-negative CD8_alpha-negative and is CD205-positive. This cell is able to cross- present antigen to CD8-alpha-positive T cells. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + http:www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD8_alpha-negative CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-positive and is CD205-negative and CD8_alpha-negative. + DC.4+ + cell + Defined as having a disposition to secreting anti-inflammatory cytokines. These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000012)(PMID:19243617). + CD4-positive CD11b-positive dendritic cell + + + + + CD8_alpha-negative CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-positive and is CD205-negative and CD8_alpha-negative. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD8_alpha-positive CD11b-negative dendritic cell is a conventional dendritic cell that is CD11b-negative, CD4-negative and is CD205-positive and CD8_alpha-positive. + DC.8+ + cell + Cells are defined as having a disposition to secreting inflammatory cytokines. Originally described in the dendritic cell ontology (DC_CL:0000013)(PMID:19243617). + CD8_alpha-positive CD11b-negative dendritic cell + + + + + + true + + + + + CD8_alpha-positive CD11b-negative dendritic cell is a conventional dendritic cell that is CD11b-negative, CD4-negative and is CD205-positive and CD8_alpha-positive. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD8_alpha-negative CD11b-negative dendritic cell is a CD8_alpha-negative CD11b-negative dendritic cell that is CD80-low, CD86-low, and MHCII-low. + cell + These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000014)(PMID:19243617). + immature CD8_alpha-negative CD11b-negative dendritic cell + + + + + + true + + + + + Immature CD8_alpha-negative CD11b-negative dendritic cell is a CD8_alpha-negative CD11b-negative dendritic cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD8_alpha-negative CD11b-negative dendritic cell is a CD8_alpha-negative CD11b-negative dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + These markers are associated with mouse cells. Defined as having a disposition to secretion of anti-inflammatory cytokines. Originally described in the dendritic cell ontology (DC_CL:0000015)(PMID:19243617). + mature CD8_alpha-negative CD11b-negative dendritic cell + + + + + + true + + + + + Mature CD8_alpha-negative CD11b-negative dendritic cell is a CD8_alpha-negative CD11b-negative dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD8_alpha-negative CD11b-positive dendritic cell is a CD8_alpha-negative CD11b-positive dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000016)(PMID:19243617). + mature CD8_alpha-negative CD11b-positive dendritic cell + + + + + + true + + + + + Mature CD8_alpha-negative CD11b-positive dendritic cell is a CD8_alpha-negative CD11b-positive dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD8_alpha-positive CD11b-negative dendritic cell is a CD8_alpha-positive CD11b-negative dendritic cell that is CD80-low, CD86-low, and MHCII-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000017)(PMID:19243617). + immature CD8_alpha-positive CD11b-negative dendritic cell + + + + + + true + + + + + Immature CD8_alpha-positive CD11b-negative dendritic cell is a CD8_alpha-positive CD11b-negative dendritic cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD8_alpha-positive CD11b-negative dendritic cell is a CD8_alpha-positive CD11b-negative dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000018)(PMID:19243617). + mature CD8_alpha-positive CD11b-negative dendritic cell + + + + + + true + + + + + Mature CD8_alpha-positive CD11b-negative dendritic cell is a CD8_alpha-positive CD11b-negative dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Dermal dendritic cell is a conventional dendritic cell that is CD11b-positive, CD205-positive and CD8 alpha-negative. + BTO:0004812 + cell + Originally described in the dendritic cell ontology (DC_CL:0000019)(PMID:19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD285-positive (TLR5), CD288-positive (TLR8), and CD289-positive (TLR9). + dermal dendritic cell + + + + + + true + + + + + Dermal dendritic cell is a conventional dendritic cell that is CD11b-positive, CD205-positive and CD8 alpha-negative. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Interstitial dendritic cell is a conventional dendritic cell that is CD11b-positive, CD1a-positive, CD206-positive, CD209-positive, and CD36-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000020)(PMID:19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD286-positive (TLR6), CD288-positive (TLR8), and CD290-positive (TLR10). + interstitial dendritic cell + + + + + + true + + + + + Interstitial dendritic cell is a conventional dendritic cell that is CD11b-positive, CD1a-positive, CD206-positive, CD209-positive, and CD36-positive. + GOC:amm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic stem cell that has plasma membrane part Kit-positive, SCA-1-positive, CD150-positive and CD34-negative. + LSK stem cell + Sca1-positive hematopoietic stem cell + cell + Cell markers are associated with mouse hematopoietic stem cell. Originally described in the dendritic cell ontology (DC_CL:0000043)(PMID:19243617). + Kit and Sca1-positive hematopoietic stem cell + + + + + + true + + + + + A hematopoietic stem cell that has plasma membrane part Kit-positive, SCA-1-positive, CD150-positive and CD34-negative. + GOC:add + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:17952047 + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature dermal dendritic cell is a dermal dendritic cell that is CD80-low, CD86-low, and MHCII-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000022)(PMID:19243617). + immature dermal dendritic cell + + + + + + true + + + + + Immature dermal dendritic cell is a dermal dendritic cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature dermal dendritic cell is a dermal dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000023)(PMID:19243617). + mature dermal dendritic cell + + + + + + true + + + + + Mature dermal dendritic cell is a dermal dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature interstitial dendritic cell is a interstitial dendritic cell that is CD80-low, CD86-low, and MHCII-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000024)(PMID:19243617). + immature interstitial dendritic cell + + + + + + true + + + + + Immature interstitial dendritic cell is a interstitial dendritic cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + cell + Originally described in the dendritic cell ontology (DC_CL:1110000)(PMID:19243617). + CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature interstitial dendritic cell is a interstitial dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000025)(PMID:19243617). + mature interstitial dendritic cell + + + + + + true + + + + + Mature interstitial dendritic cell is a interstitial dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + CD1a-positive Langerhans cell is a Langerhans_cell that is CD1a-positive and CD324-positive. + CD1a-LC + cell + These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000026)(PMID:19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD284-positive (TLR4), CD286-positive (TLR6), CD287-positive (TLR7), and CD290-positive (TLR10). When activated, these cells are capable of producing IL-6, IL-8, and IL-15. + CD1a-positive Langerhans cell + + + + + + true + + + + + CD1a-positive Langerhans cell is a Langerhans_cell that is CD1a-positive and CD324-positive. + GOC:amm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + CD8_alpha-low Langerhans cell is a Langerhans cell that is CD205-high and is CD8_alpha-low. + cell + These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000027)(PMID:19243617). They are also CD205-high, CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD285-positive (TLR5), CD286-positive (TLR6), and CD289-positive (TLR9). + CD8_alpha-low Langerhans cell + + + + + + true + + + + + CD8_alpha-low Langerhans cell is a Langerhans cell that is CD205-high and is CD8_alpha-low. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-low, CD86-low, and MHCII-low. + cell + Originally described in the dendritic cell ontology (DC_CL:0000028)(PMID:19243617). + immature CD1a-positive Langerhans cell + + + + + + true + + + + + Immature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + Originally described in the dendritic cell ontology (DC_CL:0000029)(PMID:19243617). When activated, these cells produce IL-6, IL-8, and IL-15. + mature CD1a-positive Langerhans cell + + + + + + true + + + + + Mature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:17850486 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Immature CD8_alpha-low Langerhans cell is a CD8_alpha-low Langerhans cell that is CD80-low, CD86-low, and MHCII-low. + cell + These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000030)(PMID:19243617). + immature CD8_alpha-low Langerhans cell + + + + + + true + + + + + Immature CD8_alpha-low Langerhans cell is a CD8_alpha-low Langerhans cell that is CD80-low, CD86-low, and MHCII-low. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + cell + Originally described in the dendritic cell ontology (DC_CL:1111000)(PMID:19243617). + CD115-positive monocyte OR common dendritic progenitor + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mature CD8_alpha-low Langerhans cell is a CD8_alpha-low Langerhans cell that that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000031)(PMID:19243617). + mature CD8_alpha-low Langerhans cell + + + + + + true + + + + + Mature CD8_alpha-low Langerhans cell is a CD8_alpha-low Langerhans cell that that is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:amm + GO_REF:0000031 + PMCID:PMC2346585 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A common lymphoid progenitor that is CD10-positive, CD45RA-positive, CD34-positive and CD38-positive. + CD10-positive common lymphocyte precursor + CD10-positive common lymphocyte progenitor + CD10-positive common lymphoid precursor + cell + These markers are associated with human common lymphoid progenitors. Originally described in the dendritic cell ontology (DC_CL:0000032)(PMID:19243617). + CD34-positive, CD38-positive common lymphoid progenitor + + + + + + true + + + + + A common lymphoid progenitor that is CD10-positive, CD45RA-positive, CD34-positive and CD38-positive. + GOC:add + GOC:amm + GOC:tfm + GO_REF:0000031 + PMCID:PMC2346585 + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD115-positive monocyte is a monocyte that is CD115-positive and CD11b-positive. + cell + These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000033)(PMID:19243617). + CD115-positive monocyte + + + + + + true + + + + + CD115-positive monocyte is a monocyte that is CD115-positive and CD11b-positive. + GOC:add + GOC:amm + GO_REF:0000031 + PMID:17952047 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A common myeloid progenitor that is Kit-positive and CD34-positive, Il7ra-negative, and is SCA1-low and Fcgr2-low and Fcgr3-low. + CD117-positive common myeloid precursor + cell + Markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000034)(PMID:19243617). + Kit-positive, CD34-positive common myeloid progenitor + + + + + + true + + + + + A common myeloid progenitor that is Kit-positive and CD34-positive, Il7ra-negative, and is SCA1-low and Fcgr2-low and Fcgr3-low. + GOC:add + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:1261582 + PMID:17952047 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive. + CALOHA:TS-0448 + FMA:86475 + CD133-positive hematopoietic stem cell + cell + Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID:19243617). + CD34-positive, CD38-negative hematopoietic stem cell + + + + + + true + + + + + CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive. + GOC:add + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:10430905 + PMID:11750107 + PMID:16551251 + PMID:20024907 + PMID:9389721 + + + + + CD133-positive hematopoietic stem cell + PMID:16140871 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A common lymphoid progenitor that is Kit-low, FLT3-positive, IL7ralpha-positive, and SCA1-low. + CD217-positive common lymphocyte precursor + CD217-positive common lymphocyte progenitor + CD217-positive common lymphoid precursor + cell + Markers are associated with mouse cells. + Kit-positive, Sca1-positive common lymphoid progenitor + + + + + + true + + + + + A common lymphoid progenitor that is Kit-low, FLT3-positive, IL7ralpha-positive, and SCA1-low. + GOC:add + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:17952047 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A common myeloid progenitor that is CD34-positive, CD38-positive, IL3ra-low, CD10-negative, CD7-negative, CD45RA-negative, and IL-5Ralpha-negative. + CD71-positive common myeloid precursor + cell + Markers are associated with human cell type. Originally described in the dendritic cell ontology (DC_CL:0000038)(PMID:19243617). + CD34-positive, CD38-positive common myeloid progenitor + + + + + A common myeloid progenitor that is CD34-positive, CD38-positive, IL3ra-low, CD10-negative, CD7-negative, CD45RA-negative, and IL-5Ralpha-negative. + GOC:add + GOC:amm + GO_REF:0000031 + PMCID:PMC2626675 + PMID:16551251 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD7-negative lymphoid progenitor cell is a lymphoid progenitor cell that is CD34-positive, CD7-negative and CD45RA-negative. + CD7-negative lymphoid precursor + cell + These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000039)(PMID:19243617). + CD7-negative lymphoid progenitor cell + + + + + + true + + + + + CD7-negative lymphoid progenitor cell is a lymphoid progenitor cell that is CD34-positive, CD7-negative and CD45RA-negative. + GOC:amm + GO_REF:0000031 + PMID:16551251 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CD7-positive lymphoid progenitor cell is a lymphoid progenitor cell that is CD34-positive, CD7-positive and is CD45RA-negative. + CD7-positive lymphoid precursor + cell + These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000040)(PMID:19243617). + CD7-positive lymphoid progenitor cell + + + + + + true + + + + + CD7-positive lymphoid progenitor cell is a lymphoid progenitor cell that is CD34-positive, CD7-positive and is CD45RA-negative. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:16551251 + PMID:19491395 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Common dendritic precursor is a hematopoietic progenitor cell that is CD117-low, CD135-positive, CD115-positive and lacks plasma membrane parts for hematopoietic lineage markers. + CDP + common dendritic precursor + pro-DCs + cell + Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID:19243617). + common dendritic progenitor + + + + + + true + + + + + Common dendritic precursor is a hematopoietic progenitor cell that is CD117-low, CD135-positive, CD115-positive and lacks plasma membrane parts for hematopoietic lineage markers. + GOC:amm + GOC:tfm + GO_REF:0000031 + PMID:16551251 + PMID:17922016 + PMID:19286519 + + + + + CDP + PMID:21219184 + + + + + pro-DCs + PMID:21219184 + + + + + + + + + + + + + + + + + cell + Originally described in the dendritic cell ontology (DC_CL:1111100)(PMID:19243617). + CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor + + + + + + + + + + + + + + + + + + + + Granule cell that is part of the cerebellum. + BTO:0004278 + cell + cerebellar granule cell + + + + + + true + + + + + Granule cell that is part of the cerebellum. + GOC:mah + + + + + + + + + + + + + + + + + + + Granule cell that is part of the cerebral cortex. + cell + cortical granule cell + + + + + Granule cell that is part of the cerebral cortex. + GOC:mah + + + + + + + + + + + + + + + + + + + Granule cell that is part of the hippocampus. + cell + hippocampal granule cell + + + + + Granule cell that is part of the hippocampus. + GOC:mah + + + + + + + + + A cell that is maintained or propagated in a controlled artificial environment for use in an investigation. + haendel + 2012-01-12T09:58:38Z + cell + 'In vitro', translating literally to 'in glass', typically refers to a controlled, often sterile, laboratory setting where cells or other specimens are placed by some agent for the purpose of studying or manipulating them as part of some research investigation. 'In vitro' is intended to contrast with 'native',which refers to cells or other biological entities that are found in a natural setting. It describes unicellular organisms removed from a natural environement and multicellular organism cells removed from an organism, or cells derived in culture from such displaced cells. + cell in vitro + + + + + A cell that is maintained or propagated in a controlled artificial environment for use in an investigation. + ReO:mhb + + + + + + + + + + + + + + + + + + + + A connective tissue cell found in bone. + adiehl + 2011-11-16T04:28:16Z + cell + bone cell + + + + + + true + + + + + A connective tissue cell found in bone. + GOC:add + GO_REF:0000034 + + + + + + + + + Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix. + VSAO:0000116 + cl + terminally differentiated osteoblast + + + + + Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix. + VSAO:curator + + + + + + + + + + + + + + + Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone. + VSAO:0000117 + cl + VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118 + non-terminally differentiated osteoblast + + + + + Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone. + VSAO:curator + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive alpha-beta-positive T cell with the phenotype CXCR3-positive and having suppressor function. They are capable of producing IL-10, suppressing proliferation, and suppressing IFN-gamma production. + CD8+CXCR3+ T cell + CD8+CXCR3+ T lymphocyte + CD8+CXCR3+ T(reg) + CD8+CXCR3+ T-cell + CD8+CXCR3+ T-lymphocyte + CD8+CXCR3+ Treg + CD8-positive, CXCR3-positive, T(reg) + CD8-positive, CXCR3-positive, Treg + CD8-positive, CXCR3-positive, alpha-beta regulatory T lymphocyte + CD8-positive, CXCR3-positive, alpha-beta regulatory T-cell + CD8-positive, CXCR3-positive, alpha-beta regulatory T-lymphocyte + cell + These cells may be the human equivalent of murine CD8-positive, CD122-positive alpha-beta regulatory T cell. They are also found in the CD45RA-negative and CD62L-positive fraction. + CD8-positive, CXCR3-positive, alpha-beta regulatory T cell + + + + + + true + + + + + A CD8-positive alpha-beta-positive T cell with the phenotype CXCR3-positive and having suppressor function. They are capable of producing IL-10, suppressing proliferation, and suppressing IFN-gamma production. + GOC:dsd + PMID:19609979 + + + + + + + + + + + + + + + + + + + + + + + + + + CD4-positive, alpha-beta T cell that produces IL-22. + T(H)-22 cell + Th22 T cell + Th22 T lymphocyte + Th22 T-cell + Th22 T-lymphocyte + Th22 cell + helper T cell type 22 + cell + TH22 cells are also reportedly CCR4-positive, CCR6-positive, CCR10-positive, CXCR3-negative. TH22 cells are reportedly capable of secreting IL-13. + T-helper 22 cell + + + + + + true + + + + + CD4-positive, alpha-beta T cell that produces IL-22. + GOC:dsd + PMID:19578368 + PMID:19578369 + + + + + + + + + + + + + + + + + + + + + + + + A recently activated CD4-positive, alpha-beta T cell with the phenotype HLA-DRA-positive, CD38-positive, CD69-positive, CD62L-negative, CD127-negative, and CD25-positive. + activated CD4+ T cell + activated CD4-positive, alpha-beta T lymphocyte, human + activated CD4-positive, alpha-beta T-cell, human + activated CD4-positive, alpha-beta T-lymphocyte, human + cell + This cell type is compatible with the HIPC Lyoplate markers for 'activated CD4+ T cell', but includes via logical inference from its parent additional markers known to be expressed on activated CD4+ T cells. The inclusion of HLA-DRA in the definition restricts this definition to human activated CD4+ T cells, as activated mouse T cells do not express MHC class II. + activated CD4-positive, alpha-beta T cell, human + + + + + A recently activated CD4-positive, alpha-beta T cell with the phenotype HLA-DRA-positive, CD38-positive, CD69-positive, CD62L-negative, CD127-negative, and CD25-positive. + GOC:add + PMID:22343568 + + + + + activated CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell with the phenotype CCR7-negative, CD45RA-positive. + effector CD4+ T cell + effector CD4-positive, alpha-beta T lymphocyte + effector CD4-positive, alpha-beta T-cell + effector CD4-positive, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'effector CD4+ T cell'. The functional characteristics of this cell type currently undefined in CL, which affects its proper placement within the hierarchy. + effector CD4-positive, alpha-beta T cell + + + + + A CD4-positive, alpha-beta T cell with the phenotype CCR7-negative, CD45RA-positive. + GOC:add + PMID:22343568 + + + + + effector CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + A naive regulatory T cell with the phenotype CD4-positive, CD25-positive, CD127lo, CCR4-positive, and CD45RO-negative. + naive CCR4+ Treg + naive CCR4-positive regulatory T lymphocyte + naive CCR4-positive regulatory T-cell + naive CCR4-positive regulatory T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'naive CCR4+ Treg'. The definition is valid for human; its applicability for mouse and other species is unknown. + naive CCR4-positive regulatory T cell + + + + + A naive regulatory T cell with the phenotype CD4-positive, CD25-positive, CD127lo, CCR4-positive, and CD45RO-negative. + GOC:add + PMID:22343568 + + + + + naive CCR4+ Treg + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + A memory regulatory T cell with phenotype CD4-positive, CD25-positive, CD127lo, CCR4-positive, and CD45RO-positive. + memory CCR4+ Treg + memory CCR4-positive regulatory T lymphocyte + memory CCR4-positive regulatory T-cell + memory CCR4-positive regulatory T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'memory CCR4+ Treg'. The definition is valid for human; its applicability for mouse and other species is unknown. + memory CCR4-positive regulatory T cell + + + + + A memory regulatory T cell with phenotype CD4-positive, CD25-positive, CD127lo, CCR4-positive, and CD45RO-positive. + GOC:add + PMID:22343568 + + + + + memory CCR4+ Treg + PMID:22343568 + + + + + + + + + + + + + + + + + + + + A CD4-positive, CD25-positive, alpha-beta regulatory T cell with the additional phenotype CCR4-positive. + CCR+ Treg + CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T lymphocyte + CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-cell + CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'CCR4+ Treg'. The definition is valid for human; its applicability for mouse and other species is unknown. + CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell + + + + + A CD4-positive, CD25-positive, alpha-beta regulatory T cell with the additional phenotype CCR4-positive. + GOC:add + PMID:22343568 + + + + + CCR+ Treg + PMID:22343568 + + + + + + + + + + + + + + + + + + + + A CD4-positive, CD25-positive, CCR4-positive, alpha-beta T regulatory cell with the phenotype HLA-DRA-positive, indicating recent activation. + activated CCR4+ Treg + activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T lymphocyte + activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-cell + activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'activated CCR4+ Treg'. The inclusion of HLA-DRA in the definition restricts this definition to human activated CD4+ T cells, as activated mouse T cells do not express MHC class II. + activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human + + + + + A CD4-positive, CD25-positive, CCR4-positive, alpha-beta T regulatory cell with the phenotype HLA-DRA-positive, indicating recent activation. + GOC:add + PMID:22343568 + + + + + activated CCR4+ Treg + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + A recently activated CD8-positive, alpha-beta T cell with the phenotype HLA-DRA-positive, CD38-positive, CD69-positive, CD62L-negative, CD127-negative, CCR7-negative, and CD25-positive. + activated CD8+ T cell + activated CD8-positive, alpha-beta T lymphocyte, human + activated CD8-positive, alpha-beta T-cell, human + activated CD8-positive, alpha-beta T-lymphocyte, human + cell + This cell type is compatible with the HIPC Lyoplate markers for 'activated CD8+ T cell', but includes via logical inference from its parent additional markers known to be expressed on activated CD8+ T cells. The inclusion of HLA-DRA in the definition restricts this definition to human activated CD8+ T cells, as activated mouse T cells do not express MHC class II. + activated CD8-positive, alpha-beta T cell, human + + + + + A recently activated CD8-positive, alpha-beta T cell with the phenotype HLA-DRA-positive, CD38-positive, CD69-positive, CD62L-negative, CD127-negative, CCR7-negative, and CD25-positive. + GOC:add + PMID:22343568 + + + + + activated CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell with the phenotype CCR7-negative, CD45RA-positive. + effector CD8+ T cell + effector CD8-positive, alpha-beta T lymphocyte + effector CD8-positive, alpha-beta T-cell + effector CD8-positive, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'effector CD8+ T cell'. The functional characteristics of this cell type currently undefined in CL, which affects its proper placement within the hierarchy. + effector CD8-positive, alpha-beta T cell + + + + + A CD8-positive, alpha-beta T cell with the phenotype CCR7-negative, CD45RA-positive. + GOC:add + PMID:22343568 + + + + + effector CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, alpha-beta T cell that has the phenotype CXCR3-negative, CCR6-negative. + non-Th1/Th17 CD4+ T cell + CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T lymphocyte + CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T-cell + CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'non-Th1/Th17 CD4+ T cell'. Cells of this phenotype may include T-helper 2 T cells and some naive CD4+ T cells. + CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell + + + + + A CD4-positive, alpha-beta T cell that has the phenotype CXCR3-negative, CCR6-negative. + GOC:add + PMID:22343568 + + + + + non-Th1/Th17 CD4+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell that has the phenotype CXCR3-negative, CCR6-negative. + non-Tc1/Tc17 CD8+ T cell + CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T lymphocyte + CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T-cell + CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'non-Tc1/Tc17 CD8+ T cell'. Cells of this phenotype may include Tc2 T cells and some naive CD8+ T cells. + CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell + + + + + A CD8-positive, alpha-beta T cell that has the phenotype CXCR3-negative, CCR6-negative. + GOC:add + PMID:22343568 + + + + + non-Tc1/Tc17 CD8+ T cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + A memory B cell that lacks expression of surface IgD. + IgD- memory B cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'IgD- memory B cell'. The majority of these cells are class-switched, though some are IgM-positive. + IgD-negative memory B cell + + + + + A memory B cell that lacks expression of surface IgD. + GOC:add + PMID:22343568 + + + + + IgD- memory B cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A monocyte that expresses CD14 and is negative for the lineage markers CD3, CD19, and CD20. + monocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'monocyte'. Note that while CD14 is considered a reliable marker for human monocytes, it is only expressed on approximately 85% of mouse monocytes. + CD14-positive monocyte + + + + + A monocyte that expresses CD14 and is negative for the lineage markers CD3, CD19, and CD20. + GOC:add + PMID:22343568 + + + + + monocyte + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + An intermediate monocyte that is CD14-positive and with low amounts of CD16. + intermediate monocyte, human + cell + Definition is valid for human intermediate monocytes. + CD14-positive, CD16-low monocyte + + + + + An intermediate monocyte that is CD14-positive and with low amounts of CD16. + GOC:add + PMID:20628149 + + + + + + + + + + + + + + + + + + + + A dendritic cell with the phenotype HLA-DRA-positive. + dendritic cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'dendritic cell'. The inclusion of HLA-DRA in the definition restricts this definition to human dendritic cells. + dendritic cell, human + + + + + A dendritic cell with the phenotype HLA-DRA-positive. + GOC:add + PMID:22343568 + + + + + dendritic cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + A myeloid dendritic cell with the phenotype HLA-DRA-positive. + myeloid dendritic cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'myeloid dendritic cell'. The inclusion of HLA-DRA in the definition restricts this definition to human myeloid dendritic cells. + myeloid dendritic cell, human + + + + + A myeloid dendritic cell with the phenotype HLA-DRA-positive. + GOC:add + PMID:22343568 + + + + + myeloid dendritic cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A plasmacytoid dendritic cell with the phenotype HLA-DRA-positive, CD123-positive, and CD11c-negative. + plasmacytoid dendritic cell + cell + This cell type is compatible with the HIPC Lyoplate markers for 'plasmacytoid dendritic cell'. The inclusion of HLA-DRA in the definition restricts this definition to human plasmacytoid dendritic cells. + plasmacytoid dendritic cell, human + + + + + A plasmacytoid dendritic cell with the phenotype HLA-DRA-positive, CD123-positive, and CD11c-negative. + GOC:add + PMID:22343568 + + + + + plasmacytoid dendritic cell + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. These cells are CD34-positive, and express Gata1, Gata2, C/EBPa, and Pu.1. + CMP + common myeloid precursor, CD34-positive + cell + CFU-GEMM + CFU-S + colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte + multipotential myeloid stem cell + myeloid stem cell + pluripotent stem cell (bone marrow) + CMP are reportedly CD16-positive, CD32-positive, CD38-positive, CD45RA-negative, CD110-negative, CD117-positive, CD123-positive, and SCA1-negative. + common myeloid progenitor, CD34-positive + + + + + A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. These cells are CD34-positive, and express Gata1, Gata2, C/EBPa, and Pu.1. + GOC:add + GOC:dsd + GOC:tfm + ISBN:0878932437 + PMCID:PMC2212039 + PMID:10724173 + PMID:16551251 + PMID:16647566 + + + + + CMP + ISBN:0878932437 + + + + + CFU-GEMM + ISBN:0878932437 + + + + + CFU-S + ISBN:0878932437 + + + + + colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte + ISBN:0878932437 + + + + + multipotential myeloid stem cell + ISBN:0878932437 + + + + + myeloid stem cell + ISBN:0878932437 + + + + + pluripotent stem cell (bone marrow) + ISBN:0878932437 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers. + tmeehan + 2010-01-06T03:43:27Z + cell + hematopoietic oligopotent progenitor cell, lineage-negative + + + + + A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers. + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + A cell found in an organism or derived from an organism exhibiting a phenotype that deviates from the expected phenotype of any native cell type of that organism. Abnormal cells are typically found in disease states or disease models. + + 2017-01-30T18:53:32Z + https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12913 + cell + https://github.com/obophenotype/cell-ontology/issues/448 + abnormal cell + + + + + A cell found in an organism or derived from an organism exhibiting a phenotype that deviates from the expected phenotype of any native cell type of that organism. Abnormal cells are typically found in disease states or disease models. + GOC:add + GOC:cg + GOC:wdd + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha beta memory T cell with the phenotype CD45RA-positive, CD45RO-negative, and CCR7-negative. + TEMRA + cell + This cell type is seen human but not found in the mouse. + effector memory CD8-positive, alpha-beta T cell, terminally differentiated + + + + + A CD8-positive, alpha beta memory T cell with the phenotype CD45RA-positive, CD45RO-negative, and CCR7-negative. + GOC:add + GOC:dos + PMID:15032595 + PMID:16237082 + + + + + TEMRA + PMID:16237082 + + + + + + + + + + + + + + + + + + + + An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism. + + 2017-01-30T19:16:26Z + https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12922 + cell + tumor cell + tumour cell + https://github.com/obophenotype/cell-ontology/issues/448 + neoplastic cell + + + + + An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism. + GOC:add + GOC:cg + GOC:wdd + + + + + + + + + + + + + + + + + + + + A neoplastic cell that is capable of entering a surrounding tissue + + 2017-01-30T19:39:12Z + https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12917 + cell + cancer cell + https://github.com/obophenotype/cell-ontology/issues/448 + malignant cell + + + + + A neoplastic cell that is capable of entering a surrounding tissue + GOC:add + GOC:cg + GOC:wdd + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphocyte that lacks characteristic T cell, B cell, myeloid cell, and dendritic cell markers, that functions as part of the innate immune response to produce cytokines and other effector responses. + + 2017-01-30T20:20:48Z + cell + innate lymphoid cell + + + + + A lymphocyte that lacks characteristic T cell, B cell, myeloid cell, and dendritic cell markers, that functions as part of the innate immune response to produce cytokines and other effector responses. + GOC:add + GOC:dsd + PMID:23292121 + PMID:23348417 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative). + BTO:0004911 + cell + BFU-E + CFU-E + blast forming unit erythroid + burst forming unit erythroid + colony forming unit erythroid + erythroid stem cell + erythroid progenitor cell, mammalian + + + + + A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative). + GOC:add + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + An innate lymphoid cell that is capable of producing the type 1 cytokine IFN-gamma, but not Th2 or Th17 cell-associated cytokines. + + 2017-01-30T20:42:44Z + cell + group 1 innate lymphoid cell + + + + + An innate lymphoid cell that is capable of producing the type 1 cytokine IFN-gamma, but not Th2 or Th17 cell-associated cytokines. + GOC:add + GOC:dsd + PMID:23348417 + + + + + + + + + + + + + + + + + + + + + + + + A group 1 innate lymphoid cell that is non-cytotoxic. + + 2017-01-30T20:54:12Z + cell + ILC1 + + + + + A group 1 innate lymphoid cell that is non-cytotoxic. + GOC:add + GOC:dsd + PMID:23292121 + PMID:23348417 + + + + + + + + + + + + + + + + + + + + An innate lymphoid cell that is capable of producing T-helper 2-cell associated cytokines upon stimulation. + + 2017-01-30T21:20:08Z + ILC2 + nuocyte + cell + group 2 innate lymphoid cell + + + + + An innate lymphoid cell that is capable of producing T-helper 2-cell associated cytokines upon stimulation. + GOC:add + GOC:dsd + PMID:23292121 + PMID:23562755 + + + + + + + + + + + + + + + A fat cell that is beige in color, thermogenic, and which differentiates in white fat tissue from a Myf5-negative progenitor. + beige brown adipocyte + beige fat cell + beige/brite adipocyte + brite adipocyte + brite cell + brite fat cell + cell + beige adipocyte + + + + + A fat cell that is beige in color, thermogenic, and which differentiates in white fat tissue from a Myf5-negative progenitor. + GOC:add + GOC:cvs + GOC:ymb + PMID:22796012 + PMID:25851693 + + + + + + + + + + + + + + + + + + + + An innate lymphoid cell that constituitively expresses RORgt and is capable of expressing IL17A and/or IL-22. + + 2017-01-31T20:21:26Z + ILC3 + cell + group 3 innate lymphoid cell + + + + + An innate lymphoid cell that constituitively expresses RORgt and is capable of expressing IL17A and/or IL-22. + GOC:add + GOC:dsd + PMID:23292121 + PMID:23348417 + + + + + + + + + + FBbt:00004230 + cell + visual pigment cell (sensu Nematoda and Protostomia) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An erythroid progenitor cell is Kit-positive, Ly6A-negative, CD41-negative, CD127-negative, and CD123-negative. This cell type is also described as being lin-negative, Kit-positive, CD150-negative, CD41-negative, CD105-positive, and FcgR-negative. + tmeehan + 2010-04-26T10:14:16Z + c- Kit-positive erythroid progenitor cell + cell + Markers found on mouse cells. + Kit-positive erythroid progenitor cell + + + + + + true + + + + + An erythroid progenitor cell is Kit-positive, Ly6A-negative, CD41-negative, CD127-negative, and CD123-negative. This cell type is also described as being lin-negative, Kit-positive, CD150-negative, CD41-negative, CD105-positive, and FcgR-negative. + GOC:ak + GOC:tfm + PMID:19805084 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A granulocyte monocyte progenitor is CD34-positive, CD38-positive, IL-3receptor-alpha-positive and is CD45RA-negative. + tmeehan + 2010-01-13T03:19:22Z + cell + Markers are for human cells. According to different research groups, CD45RA is present or absent on this cell population. + CD34-positive, CD38-positive granulocyte monocyte progenitor + + + + + + true + + + + + A granulocyte monocyte progenitor is CD34-positive, CD38-positive, IL-3receptor-alpha-positive and is CD45RA-negative. + GOC:tfm + PMID:12615892 + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A granulocyte monocyte progenitor that is Kit-positive, CD34-positive, Fc-gamma receptor II/II-positive, and is Sca-1-negative, Il7ra-negative, Cxc3r1-negative, and CD90-negative. + tmeehan + 2010-01-13T03:19:28Z + cell + Markers are found on mouse cells. + Kit-positive granulocyte monocyte progenitor + + + + + + true + + + + + A granulocyte monocyte progenitor that is Kit-positive, CD34-positive, Fc-gamma receptor II/II-positive, and is Sca-1-negative, Il7ra-negative, Cxc3r1-negative, and CD90-negative. + GOC:tfm + PMID:12615892 + PMID:16322423 + PMID:19022770 + PMID:19273628 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An erythroid progenitor cell that is CD34-positive and is GlyA-negative. + tmeehan + 2010-04-26T10:14:30Z + FMA:83517 + cell + Cell markers associated with human cells. + CD34-positive, GlyA-negative erythroid progenitor cell + + + + + + true + + + + + An erythroid progenitor cell that is CD34-positive and is GlyA-negative. + GOC:ak + GOC:tfm + PMID:19621348 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A proerythoblast that is CD34-negative and GlyA-negative. + tmeehan + 2010-04-26T10:31:50Z + cell + Cell surface markers are associated with human cells. + CD34-negative, GlyA-negative proerythroblast + + + + + + true + + + + + A proerythoblast that is CD34-negative and GlyA-negative. + GOC:ak + GOC:tfm + PMID:19621348 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative. + tmeehan + 2010-01-13T03:43:10Z + cell + Markers are associated with human cell type. + CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell + + + + + + true + + + + + A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative. + GOC:tfm + PMID:12615892 + PMID:190227700 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low. + tmeehan + 2010-01-13T03:43:12Z + cell + Markers are associated with mouse cells. + Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell + + + + + + true + + + + + A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low. + GOC:tfm + PMID:12615892 + PMID:19022770 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lineage marker-negative, CD34-positive, IL5r-alpha-positive, and Sca1-negative eosinophil progenitor cell. + tmeehan + 2010-01-14T03:25:15Z + cell + Markers are found on mouse cells. + Kit-low, CD34-positive eosinophil progenitor cell + + + + + + true + + + + + A lineage marker-negative, CD34-positive, IL5r-alpha-positive, and Sca1-negative eosinophil progenitor cell. + GOC:tfm + PMID:17582345 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lineage marker-negative, CD34-positive, CD38-positive, IL3r-alpha-positive, IL5r-alpha-positive, and CD45RA-negative eosinophil progenitor cell. + tmeehan + 2010-01-14T03:25:17Z + cell + Markers are associated with human cells. + CD34-positive, CD38-positive eosinophil progenitor cell + + + + + + true + + + + + A lineage marker-negative, CD34-positive, CD38-positive, IL3r-alpha-positive, IL5r-alpha-positive, and CD45RA-negative eosinophil progenitor cell. + GOC:tfm + PMCID:PMC2626675 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. + tmeehan + 2010-01-19T02:51:58Z + MDP + cell + macrophage dendritic cell progenitor + + + + + + true + + + + + A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. + GOC:tfm + PMID:19273628 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lin-negative, MHC-II-negative, CD11c-positive, FLT3-positive cell with intermediate expression of SIRP-alpha. + tmeehan + 2010-01-19T03:39:30Z + cell + pre-conventional dendritic cell + + + + + + true + + + + + A lin-negative, MHC-II-negative, CD11c-positive, FLT3-positive cell with intermediate expression of SIRP-alpha. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. Marker for this cell is Kit-high, CD115-positive, CD135-positive, Cx3cr1-positive, and is Il7ra-negative. + tmeehan + 2010-01-26T02:43:40Z + murine MDP + cell + Markers are associated with mouse cells. + Kit-positive macrophage dendritic cell progenitor + + + + + + true + + + + + A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. Marker for this cell is Kit-high, CD115-positive, CD135-positive, Cx3cr1-positive, and is Il7ra-negative. + GOC:tfm + PMID:19273628 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A proerythoblast that is Kit-low, Lyg76-positive, and CD71-positive. + tmeehan + 2010-04-26T10:31:56Z + cell + Markers are associated with mouse cells. + Kit-low proerythroblast + + + + + + true + + + + + A proerythoblast that is Kit-low, Lyg76-positive, and CD71-positive. + GOC:ak + GOC:tfm + PMID:19805084 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A basophilic erythroblast that is GlyA-positive. + tmeehan + 2010-04-26T10:41:15Z + cell + Markers are associated with human cells. + GlyA-positive basophillic erythroblast + + + + + + true + + + + + A basophilic erythroblast that is GlyA-positive. + GOC:ak + GOC:tfm + PMID:1638021 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A basophilic erythroblast that is Lyg 76-high and is Kit-negative. + tmeehan + 2010-04-26T10:41:22Z + cell + Cell surface markers are associated with mouse cells. + Kit-negative, Ly-76 high basophilic erythroblast + + + + + + true + + + + + A basophilic erythroblast that is Lyg 76-high and is Kit-negative. + GOC:ak + GOC:tfm + PMID:19805084 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A polychromatophilic erythroblast that is Lyg 76-high and is Kit-negative. + tmeehan + 2010-04-26T10:53:11Z + late basophilic and polychromatophilic erythroblast + cell + Kit-negative, Ly-76 high polychromatophilic erythroblast + + + + + + true + + + + + A polychromatophilic erythroblast that is Lyg 76-high and is Kit-negative. + GOC:ak + GOC:tfm + PMID:19805084 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A polychromatiic erythroblast that is Gly-A-positive and CD71-low. + tmeehan + 2010-04-26T10:53:16Z + cell + Cell surface markers are associated with human cells. + CD71-low, GlyA-positive polychromatic erythroblast + + + + + + true + + + + + A polychromatiic erythroblast that is Gly-A-positive and CD71-low. + GOC:ak + GOC:tfm + PMID:1638021 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative. + tmeehan + 2010-04-26T11:04:15Z + cell + Cell surface markers associated with mouse cells. + Kit-negative, Ly-76 high orthochromatophilic erythroblasts + + + + + + true + + + + + An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative. + GOC:ak + GOC:tfm + PMID:19805084 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An erythroblast that is GlyA-positive and CD71-negative. + tmeehan + 2010-04-26T11:04:21Z + cell + Markers associated with human cells. + CD71-negative, GlyA-positive orthochromatic erythroblast + + + + + + true + + + + + An erythroblast that is GlyA-positive and CD71-negative. + GOC:ak + GOC:tfm + PMID:1638021 + + + + + + + + + + + + + + + + + + + + + + + + + + A reticulocyte that is Ly76-high and is Kit-negative. + tmeehan + 2010-04-26T11:37:00Z + cell + Marker associated with mouse cells. + Ly-76 high reticulocyte + + + + + + true + + + + + A reticulocyte that is Ly76-high and is Kit-negative. + GOC:ak + GOC:tfm + PMID:18539294 + + + + + + + + + + + + + + + + + + + + + + + + + + A reticulocyte that is GlyA-positive. + tmeehan + 2010-04-26T11:48:25Z + cell + Markers is associated with human cells. + GlyA-positive reticulocytes + + + + + + true + + + + + A reticulocyte that is GlyA-positive. + GOC:ak + GOC:tfm + PMID:1638021 + + + + + + + + + + + + + + + + + + + + + + + + + + An enucleate erythrocyte that is GlyA-positive. + tmeehan + 2010-04-26T11:51:22Z + cell + Marker is associated with human cell types. + GlyA-positive erythrocyte + + + + + + true + + + + + An enucleate erythrocyte that is GlyA-positive. + GOC:ak + GOC:tfm + PMID:20134094 + + + + + + + + + + + + + + + + + + + + + + + + + + An enucleate erythrocyte that is Lyg-76-high. + tmeehan + 2010-04-26T11:51:27Z + cell + Marker is associated with mouse cell types. + Ly-76 high positive erythrocyte + + + + + + true + + + + + An enucleate erythrocyte that is Lyg-76-high. + GOC:ak + GOC:tfm + PMID:19805084 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaroycotye progenitor cell that is CD34-positive, CD41-positive and CD42-positive on the cell surface. + tmeehan + 2010-04-26T02:39:09Z + cell + Markers are associated with human cell type. + CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell + + + + + + true + + + + + A megakaroycotye progenitor cell that is CD34-positive, CD41-positive and CD42-positive on the cell surface. + GOC:ak + GOC:tfm + PMID:15232614 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaryocyte progenitor cell that is Kit-positive, CD41-positive, CD9-positive, Sca-1-negative, IL7ralpha-negative, CD150-negative, and Fcgamma receptor II/III-low. + tmeehan + 2010-04-26T02:39:15Z + cell + Markers are associated with mouse cells. + Kit-positive megakaryocyte progenitor cell + + + + + + true + + + + + A megakaryocyte progenitor cell that is Kit-positive, CD41-positive, CD9-positive, Sca-1-negative, IL7ralpha-negative, CD150-negative, and Fcgamma receptor II/III-low. + GOC:ak + GOC:tfm + PMID:16951553 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaryocyte progenitor cell that is CD34-positive, CD41-positive, and CD42-negative. + tmeehan + 2010-04-26T03:52:47Z + cell + Markers are commonly associated with human cells. + CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell + + + + + + true + + + + + A megakaryocyte progenitor cell that is CD34-positive, CD41-positive, and CD42-negative. + GOC:ak + GOC:tfm + PMID:15232614 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaryocyte progenitor cell that is CD34-negative, CD41-positive and CD42-positive. + tmeehan + 2010-04-26T03:59:22Z + cell + Markers are commonly associated with human cells. + CD34-negative, CD41-positive, CD42-positive megakaryocyte cell + + + + + + true + + + + + A megakaryocyte progenitor cell that is CD34-negative, CD41-positive and CD42-positive. + GOC:ak + GOC:tfm + PMID:15232614 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A megakaryocyte cell with is CD9-positive and CD41-positive. + tmeehan + 2010-04-27T10:39:07Z + cell + Markers are commonly associated with mouse cells. + CD9-positive, CD41-positive megakaryocyte cell + + + + + + true + + + + + A megakaryocyte cell with is CD9-positive and CD41-positive. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A cell type that can give rise to basophil and mast cells. This cell is CD34-positive, CD117-positive, CD125-positive, FceRIa-negative, and T1/ST2-negative, and expresses Gata-1, Gata-2, C/EBPa + tmeehan + 2010-04-27T12:46:33Z + BMCP + cell + There may be an intermediate cell type. These cells also CD13-positive, CD16-positive, CD32-positive, and integrin beta 7-positive. Transcription factors: GATA1-positive, MCP-1-positive, mitf-positive, PU.1-positive, and CEBP/a-low. + basophil mast progenitor cell + + + + + + true + + + + + A cell type that can give rise to basophil and mast cells. This cell is CD34-positive, CD117-positive, CD125-positive, FceRIa-negative, and T1/ST2-negative, and expresses Gata-1, Gata-2, C/EBPa + GOC:ak + GOC:dsd + GOC:tfm + PMCID:PMC1312421 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lineage-negative, Kit-positive, CD45-positive mast cell progenitor that is Fc-epsilon RIalpha-low. + tmeehan + 2010-04-27T01:22:19Z + cell + Fc-epsilon RIalpha-low mast cell progenitor + + + + + + true + + + + + A lineage-negative, Kit-positive, CD45-positive mast cell progenitor that is Fc-epsilon RIalpha-low. + GOC:tfm + PMCID:PMC1312421 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lineage negative, Sca1-negative basophil progenitor cell that is Fc epsilon RIalpha-high. + tmeehan + 2010-04-27T01:22:32Z + cell + Markers are associated with mouse cells. + Fc-epsilon RIalpha-high basophil progenitor cell + + + + + + true + + + + + A lineage negative, Sca1-negative basophil progenitor cell that is Fc epsilon RIalpha-high. + GOC:tfm + PMCID:PMC1312421 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells. + tmeehan + 2010-01-06T03:43:20Z + cell + hematopoietic lineage restricted progenitor cell + + + + + + true + + + + + A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells. + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers. + tmeehan + 2010-01-06T03:43:27Z + cell + This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060). + hematopoietic oligopotent progenitor cell + + + + + + true + + + + + A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers. + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic stem cell capable of rapid replenishment of myeloerythroid progenitors and limited self renewal capability. This cell is Kit-positive, Sca1-positive, CD34-positive, CD150-positive, and is Flt3-negative. + tmeehan + 2010-01-08T09:19:25Z + ST stem cell + ST-HSC + cell + Markers are associated with mouse cells. These cells are also reportedly CD11b-low and CD90-low. + short term hematopoietic stem cell + + + + + + true + + + + + A hematopoietic stem cell capable of rapid replenishment of myeloerythroid progenitors and limited self renewal capability. This cell is Kit-positive, Sca1-positive, CD34-positive, CD150-positive, and is Flt3-negative. + GOC:tfm + PMID:15572596 + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic stem cell with long term self renewal capability. This cell is Kit-positive, Sca1-positive, CD150-positive, CD90-low, CD34-negative and Flt3-negative. + tmeehan + 2010-01-08T09:19:28Z + LT stem cell + LT-HSC + cell + Markers are associated with mouse cells. + long term hematopoietic stem cell + + + + + + true + + + + + A hematopoietic stem cell with long term self renewal capability. This cell is Kit-positive, Sca1-positive, CD150-positive, CD90-low, CD34-negative and Flt3-negative. + GOC:tfm + PMID:15572596 + PMID:17582345 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic progenitor that has restricted self-renewal capability. Cell is Kit-positive, Ly6-positive, CD150-negative and Flt3-negative. + tmeehan + 2010-01-08T11:16:33Z + cell + Markers are associated with mouse cells. + Slamf1-negative multipotent progenitor cell + + + + + + true + + + + + A hematopoietic progenitor that has restricted self-renewal capability. Cell is Kit-positive, Ly6-positive, CD150-negative and Flt3-negative. + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic progenitor that has some limited self-renewal capability. Cells are lin-negative, Kit-positive, CD34-positive, and Slamf1-positive. + tmeehan + 2010-01-08T11:16:35Z + KSL cell + cell + Markers are associated with mouse cells. + Slamf1-positive multipotent progenitor cell + + + + + + true + + + + + A hematopoietic progenitor that has some limited self-renewal capability. Cells are lin-negative, Kit-positive, CD34-positive, and Slamf1-positive. + GOC:tfm + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + Intraepithelial T cells with a memory phenotype of CD2-positive, CD5-positive, and CD44-positive. + tmeehan + 2009-10-20T02:20:43Z + memory alpha beta IEL + cell + CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell + + + + + + true + + + + + Intraepithelial T cells with a memory phenotype of CD2-positive, CD5-positive, and CD44-positive. + GOC:tfm + PMID:16048545 + + + + + memory alpha beta IEL + PMID:16048545 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, CXCR5-positive, CCR7-negative alpha-beta T cell located in follicles of secondary lymph nodes that expresses is BCL6-high, ICOS-high and PD1-high, and stimulates follicular B cells to undergo class-switching and antibody production. + tmeehan + 2009-10-29T04:01:27Z + T(FH) + Tfh + cell + follicular B helper T cell + follicular T cell + follicular T-cell + follicular T-helper cell + follicular helper T cell + follicular helper T-cell + T follicular helper cell + + + + + + true + + + + + A CD4-positive, CXCR5-positive, CCR7-negative alpha-beta T cell located in follicles of secondary lymph nodes that expresses is BCL6-high, ICOS-high and PD1-high, and stimulates follicular B cells to undergo class-switching and antibody production. + GOC:tfm + PMID:19855402 + PMID:20107805 + PMID:22043829 + + + + + T(FH) + PMID:20207847 + + + + + Tfh + PMID:20107805 + PMID:20383172 + + + + + follicular B helper T cell + PMID:22043829 + + + + + follicular T cell + PMID:20107805 + PMID:21914188 + + + + + follicular T-helper cell + PMID:22552227 + + + + + follicular helper T cell + PMID:22649468 + + + + + follicular helper T-cell + PMID:22508770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD24-high, CD4-low, CD8-low, CD44-negative, NK1.1-negative NK T cell. + tmeehan + 2009-10-29T04:09:16Z + cell + immature NK T cell stage I + + + + + + true + + + + + A CD24-high, CD4-low, CD8-low, CD44-negative, NK1.1-negative NK T cell. + GOC:tfm + PMID:17589542 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD24-low, CD44-negative, NK1.1-negative NK T cell. + tmeehan + 2009-10-29T04:13:43Z + NKT.44-NK1.1-.Th + cell + NKT.44-NK1.1-.Th was assigned as an exact synonym based on sorting strategy displayed at immgene.org. + immature NK T cell stage II + + + + + + true + + + + + A CD24-low, CD44-negative, NK1.1-negative NK T cell. + GOC:tfm + PMID:17589542 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD24-low, CD44-positive, DX5-low, NK1.1-negative NK T cell. + tmeehan + 2009-10-29T04:14:48Z + NKT.44+.NK1.1-.Th + cell + immature NK T cell stage III + + + + + + true + + + + + A CD24-low, CD44-positive, DX5-low, NK1.1-negative NK T cell. + PMID:17589542 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD24-low, CD44-positive, DX5-high, NK1.1-negative NK T cell. + tmeehan + 2009-10-29T04:17:38Z + NKT.44+.NK1.1-.Th + cell + immature NK T cell stage IV + + + + + + true + + + + + A CD24-low, CD44-positive, DX5-high, NK1.1-negative NK T cell. + GOC:tfm + PMID:17589542 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic multipotent progenitor cell that is CD34-positive, CD38-negative, CD45RA-negative, and CD90-negative. + tmeehan + 2010-01-12T11:14:15Z + cell + Cell markers are associated with human hematopoietic multipotent progenitor cells. + CD34-positive, CD38-negative multipotent progenitor cell + + + + + + true + + + + + A hematopoietic multipotent progenitor cell that is CD34-positive, CD38-negative, CD45RA-negative, and CD90-negative. + GOC:tfm + PMID:18371405 + PMID:19022770 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A basophil mast progenitor cell that is Beta-7 integrin-high, Kit-positive FcRgammaII/III-positive and Sca1-negative. + tmeehan + 2010-04-27T01:22:38Z + cell + Markers are associated with mouse cells. + Kit-positive, integrin beta7-high basophil mast progenitor cell + + + + + + true + + + + + A basophil mast progenitor cell that is Beta-7 integrin-high, Kit-positive FcRgammaII/III-positive and Sca1-negative. + GOC:ak + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pro-B cell that CD45R/B220-positive, CD43-positive, HSA-low, BP-1-negative and Ly6c-negative. This cell type is also described as being lin-negative, AA4-positive, Kit-positive, IL7Ra-positive and CD45R-positive. + tmeehan + 2010-04-28T10:50:07Z + fraction A + cell + pre pro B cell + Markers associated with mouse cells. + Fraction A pre-pro B cell + + + + + + true + + + + + A pro-B cell that CD45R/B220-positive, CD43-positive, HSA-low, BP-1-negative and Ly6c-negative. This cell type is also described as being lin-negative, AA4-positive, Kit-positive, IL7Ra-positive and CD45R-positive. + GOC:ak + GOC:tfm + PMID:12633665 + PMID:17582343 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pro-B cell that is CD22-positive, CD34-positive, CD38-positive and TdT-positive (has TdT activity). Pre-BCR is expressed on the cell surface. Cell is CD19-negative, CD20-negative, complement receptor type 2-negative and CD10-low. D-to-J recombination of the heavy chain occurs at this stage. + tmeehan + 2010-04-28T11:19:11Z + cell + Markers are commonly associated with human cells. These cells are also reportedly CD21-negative. Transcription factors: PU.1-positive, Ikaros-positive, E2A-positive, and PAX5-positive. + early pro-B cell + + + + + + true + + + + + A pro-B cell that is CD22-positive, CD34-positive, CD38-positive and TdT-positive (has TdT activity). Pre-BCR is expressed on the cell surface. Cell is CD19-negative, CD20-negative, complement receptor type 2-negative and CD10-low. D-to-J recombination of the heavy chain occurs at this stage. + GOC:dsd + GOC:tfm + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A precursor B cell that is CD45RA-positive, CD43-positive, CD24-positive and BP-1-negative. + tmeehan + 2010-04-28T11:56:21Z + Fr. B + Fraction B + cell + Markers are commonly associated with mouse cells. These cells are also reportedly RAG1-positive and RAG2-positive. + Fraction B precursor B cell + + + + + + true + + + + + A precursor B cell that is CD45RA-positive, CD43-positive, CD24-positive and BP-1-negative. + GOC:ak + GOC:tfm + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-B cell precursor is CD19-low, CD22-positive , CD34-positive, CD38-positive. + tmeehan + 2010-04-28T12:06:06Z + cell + Late pro-B cells are also reportedly CD10-positive, CD20-negative, CD21-negative, and TdT-positive. Transcription factors: PU.1-positive, Ikaros-positive, E2A-positive, and PAX5-positive. + late pro-B cell + + + + + + true + + + + + A pre-B cell precursor is CD19-low, CD22-positive , CD34-positive, CD38-positive. + GOC:dsd + GOC:tfm + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A precursor B cell is CD45R-positive, CD43-positive, CD24-positive, and BP-positive. Intracellularly expression of surrogate light chain, Rag1 and Rag2, TdT, occurs while there is no expression of mu heavy chain. + tmeehan + 2010-04-28T02:04:01Z + cell + Fraction C + Fraction C precursor B cell + + + + + + true + + + + + A precursor B cell is CD45R-positive, CD43-positive, CD24-positive, and BP-positive. Intracellularly expression of surrogate light chain, Rag1 and Rag2, TdT, occurs while there is no expression of mu heavy chain. + GOC:tfm + PMID:17582343 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-BCR-positive precursor B cell that is CD24-high, CD25-positive, CD43-positive, CD45R-positive and BP-positive. + tmeehan + 2010-04-28T02:13:46Z + Fr. C' + Fraction C-prime + cell + Fraction C' precursor B cell + + + + + + true + + + + + A pre-BCR-positive precursor B cell that is CD24-high, CD25-positive, CD43-positive, CD45R-positive and BP-positive. + GOC:tfm + PMID:17582343 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-BCR positive T cell that is CD38-high. + tmeehan + 2010-04-28T02:27:47Z + cell + large pre-B cell type I + Markers are associated with human cells. + CD38-high pre-BCR positive cell + + + + + + true + + + + + A pre-BCR positive T cell that is CD38-high. + GOC:tfm + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pre-B cell that is pre-BCR-negative, and the kappa- and lambda- light immunoglobulin light chain-negative, CD43-low, and is BP-1-positive, CD45R-positive and CD25-positive. This cell type is also described as being AA4-positive, IgM-negative, CD19-positive, CD43-low/negative, and HSA-positive. + tmeehan + 2010-04-28T02:55:16Z + Fr. D + Fraction D pre-B cell + cell + Fraction D precursor B cells are also reportedly CD24-positive and sIgD-negative. + Fraction D precursor B cell + + + + + + true + + + + + A pre-B cell that is pre-BCR-negative, and the kappa- and lambda- light immunoglobulin light chain-negative, CD43-low, and is BP-1-positive, CD45R-positive and CD25-positive. This cell type is also described as being AA4-positive, IgM-negative, CD19-positive, CD43-low/negative, and HSA-positive. + GOC:ak + GOC:dsd + GOC:tfm + PMID:17582343 + PMID:18432934 + http://www.immgen.org/index_content.html + + + + + Fraction D pre-B cell + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A small pre-B cell that is CD22-positive and CD38-low. + tmeehan + 2010-04-28T03:04:48Z + small pre-B cell + cell + Markers are associated with human cell. RAG expression maybe diminishing. + CD22-positive, CD38-low small pre-B cell + + + + + + true + + + + + A small pre-B cell that is CD22-positive and CD38-low. + GOC:tfm + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature B cell that is IgM-positive, CD45R-positive, CD43-low, CD25-negative, and CD127-negative. This cell type has also been described as being AA4-positive, IgM-positive, CD19-positive, CD43-low/negative, and HSA-positive. + tmeehan + 2010-04-28T03:13:47Z + cell + Markers associated with mouse cells. These cells are also reportedly sIgD-negative. + Fraction E immature B cell + + + + + + true + + + + + An immature B cell that is IgM-positive, CD45R-positive, CD43-low, CD25-negative, and CD127-negative. This cell type has also been described as being AA4-positive, IgM-positive, CD19-positive, CD43-low/negative, and HSA-positive. + GOC:ak + GOC:dsd + GOC:tfm + PMID:17582343 + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature B cell that is CD38-negative, CD10-low, CD21-low, and CD22-high. + tmeehan + 2010-04-28T03:19:14Z + cell + Markers are associated with human cell type. + CD38-negative immature B cell + + + + + + true + + + + + An immature B cell that is CD38-negative, CD10-low, CD21-low, and CD22-high. + GOC:tfm + PMID:18432934 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature B cell subset originally defined as having being CD45R-positive, IgM-positive, IgD-positive and CD43-negative. Subsequent research demonstrated being CD21-positive and CD23-negative and CD93 negative. + tmeehan + 2010-04-30T03:01:48Z + cell + Fraction F mature B cell + + + + + + true + + + + + A mature B cell subset originally defined as having being CD45R-positive, IgM-positive, IgD-positive and CD43-negative. Subsequent research demonstrated being CD21-positive and CD23-negative and CD93 negative. + GOC:tfm + PMID:17582343 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A classical monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive. + tmeehan + 2010-06-05T08:25:41Z + CD16- monocyte + CD16-negative monocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'CD16- monocyte'. The markers used in the definition are associated with human monocytes. + CD14-positive, CD16-negative classical monocyte + + + + + + true + + + + + A classical monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive. + GOC:add + GOC:tfm + PMID:15615263 + PMID:1706877 + PMID:19689341 + PMID:22343568 + + + + + CD16- monocyte + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A resident monocyte that is Gr-1 low, CD43-positive, and CX3CR1-positive. + tmeehan + 2010-06-05T08:25:44Z + cell + Markers are associated with mice. The Gr epitope is used to describe this cell type is found on both Ly6c and Ly6g. However, its the Ly6c that is considered the specific marker, and thus used in the cross-product. Also, this cell-type is sometimes described as being Gr1-negative. + Gr1-low non-classical monocyte + + + + + + true + + + + + A resident monocyte that is Gr-1 low, CD43-positive, and CX3CR1-positive. + GOC:tfm + PMID:8890901 + + + + + + + + + + + + + + + + + + + + A conventional thymic dendritic cell that is CD8alpha-positive. + tmeehan + 2010-06-07T02:48:36Z + CD8alpha-alpha-positive thymic conventional dendritic cell + DC.8+.Th + cell + CD8alpha-positive thymic conventional dendritic cell + + + + + + true + + + + + A conventional thymic dendritic cell that is CD8alpha-positive. + GOC:tfm + PMID:19273629 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A melanin-containing macrophage that obtains the pigment by phagocytosis of melanosomes. + tmeehan + 2010-06-22T10:46:12Z + cell + melanophage + + + + + + true + + + + + A melanin-containing macrophage that obtains the pigment by phagocytosis of melanosomes. + GOC:tfm + PMID:20479296 + PMID:2943821 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A T-helper cell that is characterized by secreting interleukin 9 and responding to helminth infections. This cell-type can derives from Th2 cells in the presence of TGF-beta and IL-4. Th2 cytokine production is surpressed. + tmeehan + 2010-06-22T11:18:44Z + T helper cells type 9 + T(H)-9 cell + Th9 + cell + T-helper 9 cell + + + + + + true + + + + + A T-helper cell that is characterized by secreting interleukin 9 and responding to helminth infections. This cell-type can derives from Th2 cells in the presence of TGF-beta and IL-4. Th2 cytokine production is surpressed. + GOC:tfm + PMID:18931678 + PMID:19604299 + PMID:20154671 + + + + + Th9 + PMID:18931678 + + + + + + + + + + + + + + + + + + + A type I pneumocyte is a flattened, branched pneumocyte that covers more than 98% of the alveolar surface. This large cell has thin (50-100 nm) cytoplasmic extensions to form the air-blood barrier essential for normal gas exchange. + tmeehan + 2010-06-23T04:37:54Z + BTO:0000780 + FMA:62500 + AT1 + ATI + lung type 1 cells + membranous pneumocytes + pulmonary alveolar type I cell + small alveolar cells + squamous alveolar cell + squamous alveolar lining cell + type 1 alveolar epithelial cells + type 1 pneumocyte + type I alveolar cells + type I alveolar epithelial cells + cell + type I pneumocyte + + + + + A type I pneumocyte is a flattened, branched pneumocyte that covers more than 98% of the alveolar surface. This large cell has thin (50-100 nm) cytoplasmic extensions to form the air-blood barrier essential for normal gas exchange. + GOC:tfm + PMID:20054144 + http://www.copewithcytokines.de + + + + + + + + + + + + + + + + + + + + + + + A type II pneumocyte is a pneumocyte that modulates the fluid surrounding the alveolar epithelium by secreting and recycling surfactants. This cell type also contributes to tissue repair and can differentiate after injury into a type I pneumocyte. Thicker than squamous alveolar cells, have a rounded apical surface that projects above the level of surrounding epithelium. The free surface is covered by short microvilli. + tmeehan + 2010-06-24T12:04:13Z + BTO:0000538 + FMA:62501 + AT2 + ATII + TII + cuboidal type II cell + granular pneumocyte + great alveolar cell + lung type 2 cell + type 2 alveolar epithelial cell + type 2 alveolocyte + type 2 pneumocyte + type II alveolar cell + type II alveolar epithelial cell + type II alveolocyte + cell + lung type II cell + type II pneumocyte + + + + + A type II pneumocyte is a pneumocyte that modulates the fluid surrounding the alveolar epithelium by secreting and recycling surfactants. This cell type also contributes to tissue repair and can differentiate after injury into a type I pneumocyte. Thicker than squamous alveolar cells, have a rounded apical surface that projects above the level of surrounding epithelium. The free surface is covered by short microvilli. + GOC:tfm + ISBN:0412046911 + PMID:8540632 + http://www.copewithcytokines.de + + + + + + + + + + + + + + + + + + + + + + + + + + + A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules. + tmeehan + 2010-06-24T03:16:29Z + BTO:0000028 + CALOHA:TS-0737 + FMA:63032 + acinar cell of pancreas + cell + pancreatic acinar cell + + + + + + true + + + + + + true + + + + + A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules. + GOC:tfm + ISBN:0517223651 + PMID:20395539 + http://www.copewithcytokines.de/cope.cgi?key=pancreatic%20acinar%20cells + + + + + + + + + A neuroendocrine cell found in the epithelium of the lungs and respiratory tract. This cell type is rounded or elliptical in shape, situated mainly in the basal part of the epithelium; regulates bronchial secretion, smooth muscle contraction, lobular growth, ciliary activity and chemoreception. Cell has an electron-lucent cytoplasm, contains numerous dense-cored vesicles with a clear halo between the core and the limiting membrane. + tmeehan + 2010-06-28T08:24:30Z + P cell + FMA:14118 + Kultschitzky cell of bronchiole + bronchiolar Kulchitsky cell + respiratory enterochromaffin cell + cell + Feyrter cell + + + + + A neuroendocrine cell found in the epithelium of the lungs and respiratory tract. This cell type is rounded or elliptical in shape, situated mainly in the basal part of the epithelium; regulates bronchial secretion, smooth muscle contraction, lobular growth, ciliary activity and chemoreception. Cell has an electron-lucent cytoplasm, contains numerous dense-cored vesicles with a clear halo between the core and the limiting membrane. + GOC:tfm + ISBN:0412046911 + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + An enterocrine cell that produces glucagon. + tmeehan + 2010-09-10T10:48:54Z + FMA:62939 + cell + type A enterocrine cell + + + + + An enterocrine cell that produces glucagon. + GOC:tfm + ISBN:0412046911 + + + + + + + + + Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter. + tmeehan + 2010-06-28T08:36:15Z + BTO:0001032 + FMA:14146 + Purkinje cell fiber + Purkinje muscle cell + myocytus conducens cardiacus + cell + Purkinje myocyte + + + + + Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter. + FMA:0412046911 + GOC:tfm + PMID:19939742 + + + + + + + + + Mostly cylindrical, resemble Type 1 in their contents and the presence of a kinocilium and stereocilium apically; much greater variation in size, some almost span the entire thickness of the sensory epithelium, while others are smaller than Type 1; receive multiple efferent nerve boutons around their bases as well as afferent endings, which are small expansions rather than chalices. + tmeehan + 2010-06-29T09:58:13Z + FMA:67909 + type 2 vestibular hair cell + type 2 vestibular sensory cell + type II hair cell + cell + type II vestibular sensory cell + + + + + Mostly cylindrical, resemble Type 1 in their contents and the presence of a kinocilium and stereocilium apically; much greater variation in size, some almost span the entire thickness of the sensory epithelium, while others are smaller than Type 1; receive multiple efferent nerve boutons around their bases as well as afferent endings, which are small expansions rather than chalices. + GOC:tfm + ISBN:0517223651 + + + + + + + + + Bottle-shaped with narrow neck; broad, rounded basal portion where nucleus is located; stereocilia and a single kinocilium is present apically; receive nerve bouton at their base from an afferent cup-shaped (chalice or calyx) nerve ending. + tmeehan + 2010-06-29T09:58:19Z + FMA:62352 + type 1 vestibular hair cell + type 1 vestibular sensory cell + type I hair cell + cell + type I vestibular sensory cell + + + + + Bottle-shaped with narrow neck; broad, rounded basal portion where nucleus is located; stereocilia and a single kinocilium is present apically; receive nerve bouton at their base from an afferent cup-shaped (chalice or calyx) nerve ending. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + Columnar cell which populate the epithelium of large intestine and absorb water. This cell is the most numerous of the epithelial cell types in the large intestine; bear apical microvilli, contain secretory granules in their apical cytoplasm; secretion appears to be largely mucins, but is also rich in antibodies of the IgA type. + tmeehan + 2010-06-29T11:07:25Z + columnar cell + BTO:0002484 + FMA:63638 + FMA:66771 + columnar cell of the colon + vacuolar absorptive cell + cell + enterocyte of epithelium of large intestine + + + + + + true + + + + + Columnar cell which populate the epithelium of large intestine and absorb water. This cell is the most numerous of the epithelial cell types in the large intestine; bear apical microvilli, contain secretory granules in their apical cytoplasm; secretion appears to be largely mucins, but is also rich in antibodies of the IgA type. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery. + tmeehan + 2010-06-29T11:41:37Z + pacemaker cell + BTO:0004190 + FMA:67101 + P cell + cardiac pacemaker cell + myocytus nodalis + cell + nodal myocyte + + + + + A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery. + FMA:67101 + GOC:tfm + + + + + cardiac pacemaker cell + GOC:pr + + + + + + + + + Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes. + tmeehan + 2010-06-29T02:39:32Z + FMA:67142 + cell + transitional myocyte + + + + + Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes. + FMA:67142 + GOC:tfm + + + + + + + + + + The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides). + tmeehan + 2010-06-29T11:50:47Z + FMA:67111 + cell + myocardial endocrine cell + + + + + The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides). + FMA:67111 + GOC:tfm + + + + + + + + + + + + + + + + + + + Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known. + tmeehan + 2010-06-29T03:22:46Z + cell + pulmonary brush cell + brush cell of trachebronchial tree + + + + + Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known. + GOC:tfm + ISBN:0517223651 + PMID:15817800 + + + + + + + + + + + + + + + + An epithelial cell derived from endoderm. + tmeehan + 2010-06-29T03:38:14Z + FMA:69075 + cell + endo-epithelial cell + + + + + An epithelial cell derived from endoderm. + FMA:69075 + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell derived from ectoderm. + tmeehan + 2010-06-29T03:38:22Z + FMA:69074 + cell + ecto-epithelial cell + + + + + An epithelial cell derived from ectoderm. + FMA:69074 + GOC:tfm + + + + + + + + + + + + + + + + + + + + Epithelial cell derived from mesoderm or mesenchyme. + tmeehan + 2010-06-29T03:49:14Z + FMA:69076 + epithelial mesenchymal cell + cell + meso-epithelial cell + + + + + Epithelial cell derived from mesoderm or mesenchyme. + FMA:69076 + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH. + tmeehan + 2010-06-30T08:49:43Z + FMA:63099 + cell + pancreatic ductal cell + + + + + + true + + + + + Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH. + FMA:63099 + GOC:tfm + PMID:14740223 + + + + + + + + + + + + + + + + + + + + + + + + A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types. + tmeehan + 2010-06-30T08:49:52Z + FMA:62455 + centroacinar cell of Langerhans + pancreatic centroacinar cell + cell + pancreatic centro-acinar cell + + + + + + true + + + + + A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types. + GOC:tfm + PMID:12142741 + PMID:20018761 + PMID:8185160 + + + + + + + + + + This cell resembles a glia cell, express the glial marker S100 and act as a supporting cell to type I cell. This cell is located in a small cluster of type I and type II cells near the fork of the carotid artery. + tmeehan + 2010-06-30T04:23:42Z + FMA:84187 + sheath cell of carotid body + cell + type II cell of carotid body + + + + + This cell resembles a glia cell, express the glial marker S100 and act as a supporting cell to type I cell. This cell is located in a small cluster of type I and type II cells near the fork of the carotid artery. + GOC:tfm + PMID:7938227 + http://en.wikipedia.org/wiki/Carotid_body + + + + + + + + + + + + + + + + + + + + + + + + A chromaffin cell of the adrenal medulla that produces epinephrine. + tmeehan + 2010-07-14T09:41:42Z + FMA:69322 + adremergic chromaffin cell + adrenal secreting cell of the adrenal medulla + epiniphrine secreting cell of the adrenal medulla + cell + type II cell of adrenal medulla + + + + + + true + + + + + A chromaffin cell of the adrenal medulla that produces epinephrine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + A chromaffin cell of the adrenal medulla that produces norepinephrine. + tmeehan + 2010-07-14T10:12:24Z + FMA:69321 + noradrenergic chromaffin cell + cell + type I cell of adrenal medulla + + + + + + true + + + + + A chromaffin cell of the adrenal medulla that produces norepinephrine. + GOC:tfm + ISBN:068340007X + + + + + + + + + A Boettcher cell is a polyhedral cells on the basilar membrane of the cochlea, and is located beneath Claudius cells. A Boettcher cell is considered a supporting cell for the organ of Corti, and is present only in the lower turn of the cochlea. These cells interweave with each other, and project microvilli into the intercellular space. Because of their structural specialization, a Boettcher cell is believed to play a significant role in the function of the cochlea. They demonstrate high levels of calmodulin, and may be involved in mediating Ca(2+) regulation and ion transport. + tmeehan + 2010-07-14T03:22:02Z + Boettcher's cell + Bottcher cell + Bottcher's cell + cell + Boettcher cell + + + + + A Boettcher cell is a polyhedral cells on the basilar membrane of the cochlea, and is located beneath Claudius cells. A Boettcher cell is considered a supporting cell for the organ of Corti, and is present only in the lower turn of the cochlea. These cells interweave with each other, and project microvilli into the intercellular space. Because of their structural specialization, a Boettcher cell is believed to play a significant role in the function of the cochlea. They demonstrate high levels of calmodulin, and may be involved in mediating Ca(2+) regulation and ion transport. + GOC:tfm + http://en.wikipedia.org/wiki/Boettcher_cell + + + + + + + + + Specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS. Resemble spongioblasts seen in developing brain. Found in the adult brain in the third ventricle, cerebral aqueduct, spinal canal and floor of the fourth ventricle. + tmeehan + 2010-07-15T11:21:11Z + CL:0000643 + BTO:0001953 + FMA:54560 + stretch cell + cell + tanycyte + + + + + Specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS. Resemble spongioblasts seen in developing brain. Found in the adult brain in the third ventricle, cerebral aqueduct, spinal canal and floor of the fourth ventricle. + GOC:tfm + http://neurolex.org/wiki/Category:Tanycyte + + + + + + + + + A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart. + tmeehan + 2010-07-21T01:33:38Z + FMA:67968 + cell + specialized cardiac myocyte + + + + + A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart. + FMA:67968 + GOC:tfm + + + + + + + + + + + + + + + + + + + + A leukocyte that lacks granules. + tmeehan + 2010-07-22T11:30:33Z + FMA:62855 + agranular leukocyte + cell + nongranular leukocyte + + + + + + true + + + + + A leukocyte that lacks granules. + GOC:tfm + + + + + + + + + + + + + + + + + + + + This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise. + tmeehan + 2010-07-22T03:26:00Z + BTO:0003914 + FMA:86573 + ICC + intestinal pacemaker cell + cell + Some argue this cell type is of mesenchymal origin. + interstitial cell of Cajal + + + + + + true + + + + + This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise. + GOC:tfm + PMID:16460275 + PMID:19520112 + + + + + intestinal pacemaker cell + GOC:pr + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A group 2 innate lymphoid cell in the mouse capable of secreting IL-13 in response to a helminth infection. This cell is lineage-negative, ICOS-positive, IL1RL1-positive, IL7Ralpha-positive, and IL17Br-positive. + tmeehan + 2010-08-12T02:22:19Z + nuocyte + cell + group 2 innate lymphoid cell, mouse + + + + + + true + + + + + A group 2 innate lymphoid cell in the mouse capable of secreting IL-13 in response to a helminth infection. This cell is lineage-negative, ICOS-positive, IL1RL1-positive, IL7Ralpha-positive, and IL17Br-positive. + GOC:add + GOC:tfm + PMID:20200518 + + + + + + + + + One of two small cells formed by the first and second meiotic division of oocytes. + tmeehan + 2010-08-23T09:49:53Z + EHDAA2:0004716 + FMA:85543 + WBbt:0008429 + XAO:0000262 + cell + polar body + + + + + One of two small cells formed by the first and second meiotic division of oocytes. + GOC:tfm + ISBN:068340007X + http://en.wikipedia.org/wiki/Polar_body + + + + + + + + + A small cell formed by the first meiotic division of oocytes. + tmeehan + 2010-08-23T09:49:58Z + EHDAA2:0000541 + EMAPA:16032 + FMA:18650 + VHOG:0000464 + first polar body + polocytus primarius + cell + primary polar body + + + + + A small cell formed by the first meiotic division of oocytes. + GOC:tfm + ISBN:068340007X + + + + + first polar body + EHDAA2:0000541 + + + + + polocytus primarius + FMA:18650 + + + + + + + + + + + + + + + + + + + + A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells. + tmeehan + 2010-07-22T04:48:15Z + BTO:0004850 + FMA:83621 + cell + MH consider whether bone marrow cells are bone cells in the structural sense vs. being part of bone organ sense. + bone marrow cell + + + + + + true + + + + + A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells. + GOC:tfm + ISBN:0618947256 + + + + + + + + + A small cell formed by the second meiotic division of oocytes. In mammals, the second polar body may fail to form unless the ovum has been penetrated by a sperm cell. + tmeehan + 2010-08-23T09:50:01Z + EHDAA2:0001820 + EMAPA:16034 + EMAPA:16045 + FMA:18651 + polocytus secundarius + second polar body + cell + secondary polar body + + + + + A small cell formed by the second meiotic division of oocytes. In mammals, the second polar body may fail to form unless the ovum has been penetrated by a sperm cell. + GOC:tfm + ISBN:068340007X + + + + + polocytus secundarius + FMA:18651 + + + + + second polar body + EHDAA2:0001820 + + + + + + + + + A cell that makes up the loose connective tissue of the ovary. + tmeehan + 2010-08-23T11:11:34Z + FMA:18709 + cell + interstitial cell of ovary + + + + + A cell that makes up the loose connective tissue of the ovary. + GOC:tfm + + + + + + + + + + A cell in the hilum of the ovary that produces androgens. + tmeehan + 2010-08-23T11:18:18Z + FMA:18710 + hilar cell of ovary + cell + hilus cell of ovary + + + + + A cell in the hilum of the ovary that produces androgens. + GOC:tfm + ISBN:068340007X + + + + + + + + + + + + + + + + + + + + A specialised myocyte that lies between the sinoatrial node and the atrioventricular node and is involved in the conduction of electrical signals. + tmeehan + 2010-08-23T11:24:11Z + FMA:223275 + cell + internodal tract myocyte + + + + + A specialised myocyte that lies between the sinoatrial node and the atrioventricular node and is involved in the conduction of electrical signals. + GOC:tfm + ISBN:0781729300 + + + + + + + + + + + + + + + + + + + + + + A cell of the adrenal cortex. Cell types include those that synthesize and secrete chemical derivatives (steroids) of cholesterol. + tmeehan + 2010-08-24T01:37:44Z + FMA:69545 + adrenal cortex cell + adrenocortical cell + cell + cortical cell of adrenal gland + + + + + + true + + + + + A cell of the adrenal cortex. Cell types include those that synthesize and secrete chemical derivatives (steroids) of cholesterol. + GOC:tfm + + + + + + + + + A cardiac myocyte that is connected to other cardiac myocytes by transverse intercalated discs (GO:0014704) at a regular interval. + tmeehan + 2010-08-23T11:33:10Z + FMA:67967 + regular cardiac muscle cell + regular cardiac muscle fiber + cell + regular cardiac myocyte + + + + + A cardiac myocyte that is connected to other cardiac myocytes by transverse intercalated discs (GO:0014704) at a regular interval. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A small, polyhedral, cell found in rounded groups or curved columns with deeply staining nuclei, scanty basophilic cytoplasm and a few lipid droplets. This cell in the zona glomerulosa produces mineralocorticoids. + tmeehan + 2010-08-24T01:42:02Z + CL:1000423 + FMA:69273 + epithelial cell of zona glomerulosa of adrenal gland + cell + type I cell of adrenal cortex + + + + + + true + + + + + A small, polyhedral, cell found in rounded groups or curved columns with deeply staining nuclei, scanty basophilic cytoplasm and a few lipid droplets. This cell in the zona glomerulosa produces mineralocorticoids. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A regular cardiac myocyte of the interventricular region of the heart. + tmeehan + 2010-08-23T11:40:52Z + FMA:228792 + cell + regular interventricular cardiac myocyte + + + + + A regular cardiac myocyte of the interventricular region of the heart. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A CD38-positive naive B cell is a mature B cell that has the phenotype CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, and that has not yet been activated by antigen in the periphery. + CD38+ naive B cell + CD38+ naive B lymphocyte + CD38+ naive B-cell + CD38+ naive B-lymphocyte + CD38-positive naive B lymphocyte + CD38-positive naive B-cell + CD38-positive naive B-lymphocyte + cell + CD38-positive naive B cell + + + + + + true + + + + + A CD38-positive naive B cell is a mature B cell that has the phenotype CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, and that has not yet been activated by antigen in the periphery. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A CD38-negative naive B cell is a mature B cell that has the phenotype CD38-negative, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery. + CD38- naive B cell + CD38- naive B lymphocyte + CD38- naive B-cell + CD38- naive B-lymphocyte + CD38-negative naive B lymphocyte + CD38-negative naive B-cell + CD38-negative naive B-lymphocyte + cell + CD38-negative naive B cell + + + + + + true + + + + + A CD38-negative naive B cell is a mature B cell that has the phenotype CD38-negative, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + An IgG-positive double negative memory B cell is a double negative memory B cell with the phenotype IgG-positive, IgD-negative, and CD27-negative. + IgG+ dn memory B cell + IgG+ dn memory B lymphocyte + IgG+ dn memory B-cell + IgG+ dn memory B-lymphocyte + IgG+ double negative memory B cell + IgG+ double negative memory B lymphocyte + IgG+ double negative memory B-cell + IgG+ double negative memory B-lymphocyte + IgG-positive dn memory B cell + IgG-positive dn memory B lymphocyte + IgG-positive dn memory B-cell + IgG-positive dn memory B-lymphocyte + IgG-positive double negative memory B lymphocyte + IgG-positive double negative memory B-cell + IgG-positive double negative memory B-lymphocyte + cell + IgG-positive double negative memory B cell + + + + + + true + + + + + An IgG-positive double negative memory B cell is a double negative memory B cell with the phenotype IgG-positive, IgD-negative, and CD27-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + An IgG-negative double negative memory B cell is a double negative memory B cell with the phenotype IgG-negative, IgD-negative, and CD27-negative. + IgG- dn memory B cell + IgG- dn memory B lymphocyte + IgG- dn memory B-cell + IgG- dn memory B-lymphocyte + IgG- double negative memory B cell + IgG- double negative memory B lymphocyte + IgG- double negative memory B-cell + IgG- double negative memory B-lymphocyte + IgG-negative dn memory B cell + IgG-negative dn memory B lymphocyte + IgG-negative dn memory B-cell + IgG-negative dn memory B-lymphocyte + IgG-negative double negative memory B lymphocyte + IgG-negative double negative memory B-cell + IgG-negative double negative memory B-lymphocyte + cell + IgG-negative double negative memory B cell + + + + + + true + + + + + An IgG-negative double negative memory B cell is a double negative memory B cell with the phenotype IgG-negative, IgD-negative, and CD27-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A CD38-positive IgG memory B cell is a class switched memory B cell that expresses IgG on the cell surface with the phenotype CD38-positive and IgG-positive. + CD38+ IgG memory B cell + CD38+ IgG memory B lymphocyte + CD38+ IgG memory B-cell + CD38+ IgG memory B-lymphocyte + CD38-positive IgG memory B lymphocyte + CD38-positive IgG memory B-cell + CD38-positive IgG memory B-lymphocyte + cell + CD38-positive IgG memory B cell + + + + + + true + + + + + A CD38-positive IgG memory B cell is a class switched memory B cell that expresses IgG on the cell surface with the phenotype CD38-positive and IgG-positive. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + An IgD-positive CD38-positive IgG memory B cell is a CD38-positive IgG-positive class switched memory B cell that has class switched and expresses IgD on the cell surface with the phenotype IgD-positive, CD38-positive, and IgG-positive. + cell + IgD-positive CD38-positive IgG memory B cell + + + + + + true + + + + + An IgD-positive CD38-positive IgG memory B cell is a CD38-positive IgG-positive class switched memory B cell that has class switched and expresses IgD on the cell surface with the phenotype IgD-positive, CD38-positive, and IgG-positive. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + An IgD-negative CD38-positive IgG memory B cell is a CD38-positive IgG-positive that has class switched and lacks expression of IgD on the cell surface with the phenotype IgD-negative, CD38-positive, and IgG-positive. + cell + IgD-negative CD38-positive IgG memory B cell + + + + + + true + + + + + An IgD-negative CD38-positive IgG memory B cell is a CD38-positive IgG-positive that has class switched and lacks expression of IgD on the cell surface with the phenotype IgD-negative, CD38-positive, and IgG-positive. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + + + + + A CD38-negative IgG memory B cell is a IgG-positive class switched memory B cell that has class switched and expresses IgG on the cell surface with the phenotype CD38-negative, IgD-negative, and IgG-positive. + cell + CD38-negative IgG memory B cell + + + + + + true + + + + + A CD38-negative IgG memory B cell is a IgG-positive class switched memory B cell that has class switched and expresses IgG on the cell surface with the phenotype CD38-negative, IgD-negative, and IgG-positive. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-positive CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-positive, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, and that has not yet been activated by antigen in the periphery. + B220+CD38+ naive B cell + B220+CD38+ naive B lymphocyte + B220+CD38+ naive B-cell + B220+CD38+ naive B-lymphocyte + B220-positive CD38-positive naive B lymphocyte + B220-positive CD38-positive naive B-cell + B220-positive CD38-positive naive B-lymphocyte + CD38+B220+ naive B cell + CD38+B220+ naive B lymphocyte + CD38+B220+ naive B-cell + CD38+B220+ naive B-lymphocyte + cell + B220-positive CD38-positive naive B cell + + + + + + true + + + + + A B220-positive CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-positive, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, and that has not yet been activated by antigen in the periphery. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-low CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-low, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery. + cell + B220-low CD38-positive naive B cell + + + + + + true + + + + + A B220-low CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-low, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + An CD38-negative unswitched memory B cell is an unswitched memory B cell that has the phenotype CD38-negative, IgD-positive, CD138-negative, and IgG-negative. + CD38- unswitched memory B cell + CD38- unswitched memory B lymphocyte + CD38- unswitched memory B-cell + CD38- unswitched memory B-lymphocyte + CD38-negative unswitched memory B lymphocyte + CD38-negative unswitched memory B-cell + CD38-negative unswitched memory B-lymphocyte + cell + CD38-negative unswitched memory B cell + + + + + + true + + + + + An CD38-negative unswitched memory B cell is an unswitched memory B cell that has the phenotype CD38-negative, IgD-positive, CD138-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-positive CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-positive, CD38-negative, IgD-positive, CD138-negative, and IgG-negative. + cell + B220-positive CD38-negative unswitched memory B cell + + + + + + true + + + + + A B220-positive CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-positive, CD38-negative, IgD-positive, CD138-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-low CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-low, CD38-negative, IgD-positive, CD138-negative, and IgG-negative. + cell + B220-low CD38-negative unswitched memory B cell + + + + + + true + + + + + A B220-low CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-low, CD38-negative, IgD-positive, CD138-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A CD38-positive unswitched memory B cell is an unswitched memory B cell that has the phenotype CD38-positive, IgD-positive, CD138-negative, and IgG-negative. + CD38+ unswitched memory B cell + CD38+ unswitched memory B lymphocyte + CD38+ unswitched memory B-cell + CD38+ unswitched memory B-lymphocyte + CD38-positive unswitched memory B lymphocyte + CD38-positive unswitched memory B-cell + CD38-positive unswitched memory B-lymphocyte + cell + CD38-positive unswitched memory B cell + + + + + + true + + + + + A CD38-positive unswitched memory B cell is an unswitched memory B cell that has the phenotype CD38-positive, IgD-positive, CD138-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-positive CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-positive, CD38-positive, IgD-positive, CD138-negative, and IgG-negative. + cell + B220-positive CD38-positive unswitched memory B cell + + + + + + true + + + + + A B220-positive CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-positive, CD38-positive, IgD-positive, CD138-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-low CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-low, CD38-positive, IgD-positive, CD138-negative, and IgG-negative. + cell + B220-low CD38-positive unswitched memory B cell + + + + + + true + + + + + A B220-low CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-low, CD38-positive, IgD-positive, CD138-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A class switched memory B cell that lacks IgG on the cell surface. + IgG- class switched memory B cell + IgG- class switched memory B lymphocyte + IgG- class switched memory B-cell + IgG- class switched memory B-lymphocyte + IgG-negative class switched memory B lymphocyte + IgG-negative class switched memory B-cell + IgG-negative class switched memory B-lymphocyte + cell + IgG-negative class switched memory B cell + + + + + + true + + + + + A class switched memory B cell that lacks IgG on the cell surface. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A CD38-negative IgG-negative memory B cell is a IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-negative and IgG-negative. + cell + CD38-negative IgG-negative class switched memory B cell + + + + + + true + + + + + A CD38-negative IgG-negative memory B cell is a IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-negative and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A CD38-positive IgG-negative memory B cell is an IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-positive and IgG-negative. + cell + CD38-positive IgG-negative class switched memory B cell + + + + + + true + + + + + A CD38-positive IgG-negative memory B cell is an IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-positive and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + An CD24-positive CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-positive, CD38-negative, and IgG-negative. + cell + CD24-positive CD38-negative IgG-negative class switched memory B cell + + + + + + true + + + + + An CD24-positive CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-positive, CD38-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A CD24-negative CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-negative, CD38-negative, and IgG-negative. + cell + CD24-negative CD38-negative IgG-negative class switched memory B cell + + + + + + true + + + + + A CD24-negative CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-negative, CD38-negative, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-positive CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-positive, CD38-positive, and IgG-negative. + cell + B220-positive CD38-positive IgG-negative class switched memory B cell + + + + + + true + + + + + A B220-positive CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-positive, CD38-positive, and IgG-negative. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + A B220-low CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-low, CD38-positive, and IgG-positive. + cell + B220-low CD38-positive IgG-negative class switched memory B cell + + + + + + true + + + + + A B220-low CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-low, CD38-positive, and IgG-positive. + GOC:dsd + GOC:rhs + GOC:tfm + PMID:20123131 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A circulating gamma-delta T cell that is CD27-positive and capable of producing IFN-gamma. + tmeehan + 2010-08-18T09:57:19Z + gammadelta27-positive + gd27-positive + cell + CD27-positive gamma-delta T cell + + + + + + true + + + + + A circulating gamma-delta T cell that is CD27-positive and capable of producing IFN-gamma. + GOC:dsd + GOC:tfm + PMID:19270712 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A circulating gamma-delta T cell that expresses RORgamma(t), is CD27-negative and is capable of IL-17 secretion. + tmeehan + 2010-08-18T09:57:29Z + gammadelta-17 cells + cell + CD27-negative gamma-delta T cell + + + + + + true + + + + + A circulating gamma-delta T cell that expresses RORgamma(t), is CD27-negative and is capable of IL-17 secretion. + GOC:dsd + GOC:tfm + PMID:19270712 + + + + + gammadelta-17 cells + PMID:21976777 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD25-positive, CD27-positive immature gamma-delta T cell found in the thymus that has an immature phenotype (i.e. CD24-high, CD25-high, CD62L-high, CD44-high, CD2-low, CD5-low). + tmeehan + 2010-08-18T10:35:37Z + cell + CD25-positive, CD27-positive immature gamma-delta T cell + + + + + + true + + + + + A CD25-positive, CD27-positive immature gamma-delta T cell found in the thymus that has an immature phenotype (i.e. CD24-high, CD25-high, CD62L-high, CD44-high, CD2-low, CD5-low). + GOC:tfm + PMID:19270712 + + + + + + + + + + + + + + + + + + + + A T cell with a receptor of limited diversity that is capable of immediate effector functions upon stimulation. + tmeehan + 2010-08-20T02:14:25Z + cell + innate effector T cell + + + + + + true + + + + + A T cell with a receptor of limited diversity that is capable of immediate effector functions upon stimulation. + GOC:tfm + PMID:20581831 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, alpha-beta T cell that has the phenotype CXCR3-negative, CCR6-positive, CCR5-high, CD45RA-negative, and capable of producing IL-17 and some IFNg. + Tc17 CD8+ T cell + Tc17 T cell + Tc17 T lymphocyte + Tc17 T-cell + Tc17 T-lymphocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'Tc17 CD8+ T cell', but its logical definition includes additional known characteristics of Tc17 T cells. Found in the CD27-positive, CD28-positive or CD27-negative, CD28-positive fractions with the phenotype CCR4-negative and CCR7-negative (this sentence not part of definition). + Tc17 cell + + + + + + true + + + + + A CD8-positive, alpha-beta T cell that has the phenotype CXCR3-negative, CCR6-positive, CCR5-high, CD45RA-negative, and capable of producing IL-17 and some IFNg. + GOC:add + GOC:dsd + GOC:tfm + PMID:19201830 + PMID:22343568 + + + + + Tc17 CD8+ T cell + PMID:22343568 + + + + + + + + + Regular cardiac myocyte of a cardiac atrium. + tmeehan + 2010-08-23T11:41:03Z + FMA:83108 + atrial cardiac muscle cell + atrial myocyte + regular atrial cardiac muscle fiber + regular cardiac muscle cell of atrium + cell + regular atrial cardiac myocyte + + + + + Regular cardiac myocyte of a cardiac atrium. + GOC:tfm + + + + + atrial cardiac muscle cell + GOC:pr + + + + + + + + + A cardiac myocyte of the interatrial region of the heart. + tmeehan + 2010-08-23T11:41:09Z + FMA:228790 + cell + regular interatrial cardiac myocyte + + + + + A cardiac myocyte of the interatrial region of the heart. + GOC:tfm + + + + + + + + + Regular cardiac myocyte of a cardiac ventricle. + tmeehan + 2010-08-23T11:41:13Z + ventricular cardiac muscle cell + FMA:83109 + regular cardiac muscle cell of ventricle + regular ventricular cardiac muscle fiber + ventricular myocyte + cell + regular ventricular cardiac myocyte + + + + + Regular cardiac myocyte of a cardiac ventricle. + GOC:tfm + + + + + ventricular cardiac muscle cell + GOC:pr + + + + + + + + + + + + + + + + + + + A stomal cell of the ovary + tmeehan + 2010-08-23T12:10:31Z + FMA:72299 + ovarian stromal cell + cell + stromal cell of ovary + + + + + A stomal cell of the ovary + GOC:tfm + + + + + ovarian stromal cell + GOC:cjm + + + + + + + + + A stromal cell of the ovarian cortex. + tmeehan + 2010-08-23T12:12:15Z + FMA:256169 + cell + stromal cell of ovarian cortex + + + + + A stromal cell of the ovarian cortex. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A stromal cell of the ovarian medulla. + tmeehan + 2010-08-23T12:12:17Z + FMA:256171 + cell + stromal cell of ovarian medulla + + + + + + true + + + + + A stromal cell of the ovarian medulla. + GOC:tfm + + + + + + + + + + + + + + + Epidermal cells that do not contain keratin. Cell type is usually associated with moist epidermal tissues. + tmeehan + 2010-08-24T08:43:27Z + FMA:62880 + cell + nonkeratinized cell of epidermis + + + + + Epidermal cells that do not contain keratin. Cell type is usually associated with moist epidermal tissues. + GO:tfm + PMID:1987287 + + + + + + + + + + A cell in the zona fasciculata that produce glucocorticoids, e.g cortisol. + tmeehan + 2010-08-24T01:50:42Z + FMA:69547 + type II cortical cell of adrenal gland + cell + type II cell of adrenal cortex + + + + + A cell in the zona fasciculata that produce glucocorticoids, e.g cortisol. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + A cell in the zona reticularis that produce sex hormones. + tmeehan + 2010-08-24T01:50:44Z + FMA:69564 + cell + type III cell of adrenal cortex + + + + + A cell in the zona reticularis that produce sex hormones. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + + + + A endothelial cell of a lymphatic vessel. The border of the oak leaf-shaped endothelial cell of initial lymphatics are joined by specialized buttons. The discontinuous feature of buttons distinguishes them from zippers in collecting lymphatics, but both types of junctions are composed of proteins typical of adherens junctions and tight junctions found in the endothelium of blood vessels. Buttons seal the sides of flaps of the oak leaf-shaped endothelial cell, leaving open the tips of flaps as routes for fluid entry without disassembly and reformation of intercellular junctions. + tmeehan + 2010-08-24T02:05:28Z + CL:1000421 + BTO:0004167 + FMA:68458 + LEC + lymphatic endothelial cell + cell + endothelial cell of lymphatic vessel + + + + + + true + + + + + A endothelial cell of a lymphatic vessel. The border of the oak leaf-shaped endothelial cell of initial lymphatics are joined by specialized buttons. The discontinuous feature of buttons distinguishes them from zippers in collecting lymphatics, but both types of junctions are composed of proteins typical of adherens junctions and tight junctions found in the endothelium of blood vessels. Buttons seal the sides of flaps of the oak leaf-shaped endothelial cell, leaving open the tips of flaps as routes for fluid entry without disassembly and reformation of intercellular junctions. + GOC:tfm + PMID:17846148 + + + + + + + + + An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels. + tmeehan + 2010-08-24T02:06:40Z + BTO:0001854 + CALOHA:TS-1106 + FMA:67755 + vascular endothelial cell + cubodial endothelial cell of vascular tree + cell + These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive. + endothelial cell of vascular tree + + + + + An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels. + GOC:dsd + GOC:tfm + PMID:12768659 + + + + + + + + + + + + + + + + + + + + + + A sebum secreting cell of the skin that secretes sebum into the hair follicles. + tmeehan + 2010-08-24T09:27:52Z + CL:0002587 + sebocyte + BTO:0004613 + FMA:70953 + cell + acinar cell of sebaceous gland + + + + + + true + + + + + A sebum secreting cell of the skin that secretes sebum into the hair follicles. + GOC:tfm + + + + + + + + + A parathyroid chief cell that is actively secreting hormone. Have large Golgi complexes with numerous vesicles and small membrane-bound granules; secretory granules are rare, cytoplasmic glycogen sparse, much of the cytoplasm being occupied by flat sacs of granular endoplasmic reticulum in parallel arrays; in normal humans, inactive chief cells outnumber active chief cells in a ratio of 3-5:1 + tmeehan + 2010-08-24T09:30:15Z + FMA:69082 + cell + active chief cell of parathyroid gland + + + + + A parathyroid chief cell that is actively secreting hormone. Have large Golgi complexes with numerous vesicles and small membrane-bound granules; secretory granules are rare, cytoplasmic glycogen sparse, much of the cytoplasm being occupied by flat sacs of granular endoplasmic reticulum in parallel arrays; in normal humans, inactive chief cells outnumber active chief cells in a ratio of 3-5:1 + FMA:0517223651 + GOC:tfm + + + + + + + + + + + + + + + + A cell pyramidal in shape, with their broad ends facing and forming the greater extent of the lining of the main lumen. Secretes glycoproteins associated with mucus. + tmeehan + 2010-08-24T02:15:16Z + FMA:70659 + cell + dark cell of eccrine sweat gland + + + + + A cell pyramidal in shape, with their broad ends facing and forming the greater extent of the lining of the main lumen. Secretes glycoproteins associated with mucus. + ISBN:0517223651 + + + + + + + + + A chief cell that is smaller than light chief cells and has a smaller and darker nucleus and a finely granular cytoplasm with many granules. + tmeehan + 2010-08-24T02:18:36Z + FMA:69080 + cell + dark chief cell of parathyroid cell + + + + + A chief cell that is smaller than light chief cells and has a smaller and darker nucleus and a finely granular cytoplasm with many granules. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + An endothelial cell found in capillaries. + tmeehan + 2010-08-24T10:15:00Z + BTO:0004956 + CALOHA:TS-0112 + FMA:67756 + cell + capillary endothelial cell + + + + + + true + + + + + An endothelial cell found in capillaries. + GOC:tfm + + + + + + + + + + + + + + + + A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree. + tmeehan + 2010-08-24T03:38:29Z + FMA:70542 + cell + ciliated columnar cell of tracheobronchial tree + + + + + A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + A sweat producing cell of eccrine sweat glands. Pyramidal in shape, with its base resting on the basal lamina or myoepitheliocytes, and its microvillus-covered apical plasma membrane line up the intercellular canaliculi. Cell is not stained by hematoxylin or eosin. + tmeehan + 2010-08-24T10:33:02Z + FMA:70658 + cell + clear cell of eccrine sweat gland + + + + + A sweat producing cell of eccrine sweat glands. Pyramidal in shape, with its base resting on the basal lamina or myoepitheliocytes, and its microvillus-covered apical plasma membrane line up the intercellular canaliculi. Cell is not stained by hematoxylin or eosin. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A chief cell of parathyroid glands that does not stain with hematoxylin or eosin. This cell is larger, has a larger nucleus and fewer secretory granules than dark chief cells. + tmeehan + 2010-08-24T10:39:42Z + FMA:69081 + cell + clear chief cell of parathyroid cell + + + + + A chief cell of parathyroid glands that does not stain with hematoxylin or eosin. This cell is larger, has a larger nucleus and fewer secretory granules than dark chief cells. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + A cell found within the dental pulp. + tmeehan + 2010-08-24T02:52:09Z + BTO:0000339 + CALOHA:TS-0195 + FMA:87170 + cell + dental pulp cell + + + + + A cell found within the dental pulp. + GOC:tfm + PMID:11087820 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the uterus. + tmeehan + 2010-08-24T10:45:54Z + CL:1000294 + FMA:256161 + cell + epithelial cell of uterus + + + + + + true + + + + + An epithelial cell of the uterus. + GOC:tfm + + + + + + + + + + + + + + + Epithelioid macrophage is an activated macrophage that resembles an epithelial cell with finely granular, pale eosinophilic cytoplasm and central, ovoid nucleus (oval or elongate). This cell type is able to merge into one another to form aggregates. The presence of such aggregates may characterize some pathologic conditions, mainly granulomatous inflammation. + tmeehan + 2010-08-24T03:48:30Z + epithelioid cell + FMA:83514 + epithelioid histocyte + epitheloid macrophage + cell + epithelioid macrophage + + + + + Epithelioid macrophage is an activated macrophage that resembles an epithelial cell with finely granular, pale eosinophilic cytoplasm and central, ovoid nucleus (oval or elongate). This cell type is able to merge into one another to form aggregates. The presence of such aggregates may characterize some pathologic conditions, mainly granulomatous inflammation. + MESH:A11.329.372.300 + PMID:12673090 + + + + + epithelioid histocyte + MESH:A11.329.372.300 + PMID:12673090 + + + + + + + + + A promyelocyte that is considerably smaller, with more condensed chromatin, and nucleoli are no longer conspicuous. + tmeehan + 2010-08-24T03:07:50Z + FMA:83534 + cell + late promyelocyte + + + + + A promyelocyte that is considerably smaller, with more condensed chromatin, and nucleoli are no longer conspicuous. + ISBN:0412046911 + + + + + + + + + + + + + + + A columnar cell of the cervix uteri. + tmeehan + 2010-08-24T10:47:47Z + FMA:86486 + cell + columnar cell of endocervix + + + + + A columnar cell of the cervix uteri. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + The dead keratin-filled squamous cell of the stratum corneum. This cell type lacks a nucleus. + tmeehan + 2010-08-24T10:53:03Z + BTO:0001943 + FMA:68650 + cell + corneocyte + + + + + The dead keratin-filled squamous cell of the stratum corneum. This cell type lacks a nucleus. + GOC:tfm + ISBN:068340007X + + + + + + + + + A promyelocyte with a nucleus that is indented and contains more marginated heterochromatin compared to its precursor cell (myeloblast); cytoplasm is deeply basophilic and contains numerous mitochondria and meandering cysternae of endoplasmic reticulum; largest of the granulocyte lineages. + tmeehan + 2010-08-24T03:07:53Z + FMA:83533 + cell + early promyelocyte + + + + + A promyelocyte with a nucleus that is indented and contains more marginated heterochromatin compared to its precursor cell (myeloblast); cytoplasm is deeply basophilic and contains numerous mitochondria and meandering cysternae of endoplasmic reticulum; largest of the granulocyte lineages. + FMA:0412046911 + GOC:tfm + + + + + + + + + A crenated erythrocyte with 30+ crenations, bumps or spurs that are the result of damage due to age or disease. + tmeehan + 2010-08-24T03:15:21Z + FMA:81099 + burr cell + cell + echinocyte + + + + + A crenated erythrocyte with 30+ crenations, bumps or spurs that are the result of damage due to age or disease. + GOC:tfm + + + + + + + + + + + + + + + A cell type that makes up the highly vascular membrane lining the marrow cavity of long bones. + tmeehan + 2010-08-24T03:33:58Z + FMA:86495 + cell + endosteal cell + + + + + A cell type that makes up the highly vascular membrane lining the marrow cavity of long bones. + FMA:0618947256 + GOC:tfm + + + + + + + + + Epithelial cell found on the external side of the tympanic membrane + tmeehan + 2010-08-25T10:25:31Z + FMA:70558 + cell + external epithelial cell of tympanic membrane + + + + + Epithelial cell found on the external side of the tympanic membrane + GOC:tfm + PMID:5686391 + + + + + + + + + Epithelial cells derived from general body ectoderm and ectoderm placodes. + tmeehan + 2010-08-26T08:31:08Z + FMA:70556 + cell + general ecto-epithelial cell + + + + + Epithelial cells derived from general body ectoderm and ectoderm placodes. + GOC:tfm + + + + + + + + + A cell type found in the basal epithelial layer on the external side of the tympanic membrane. Cell type is flattened with intracellular spaces of variable dimensions. + tmeehan + 2010-08-25T10:28:44Z + cell + basal external epithelial cell of tympanic membrane + + + + + A cell type found in the basal epithelial layer on the external side of the tympanic membrane. Cell type is flattened with intracellular spaces of variable dimensions. + PMID:5686391 + + + + + + + + + A cell type found on the superficial layer of the external side of the tympanic membrane. This cell-type lacks a nucleus. + tmeehan + 2010-08-25T10:28:48Z + cell + superficial external epithelial cell of tympanic membrane + + + + + A cell type found on the superficial layer of the external side of the tympanic membrane. This cell-type lacks a nucleus. + PMID:5686391 + + + + + + + + + + + + + + + An extremely flattened cell type found on the inner side of the tympanic membrane. The surface of this cell type carries sparse pleomorphic microvilli that are more common near the junctional zones. + tmeehan + 2010-08-25T10:49:46Z + FMA:70626 + cell + internal epithelial cell of tympanic membrane + + + + + An extremely flattened cell type found on the inner side of the tympanic membrane. The surface of this cell type carries sparse pleomorphic microvilli that are more common near the junctional zones. + FMA:5686391 + GOC:tfm + + + + + + + + + A rod-shpaed cell that forms a single row adjacent to and supporting the inner hair cells. + tmeehan + 2010-08-25T11:05:21Z + FMA:75722 + FMA:75726 + cell + internal pillar cell of cochlea + + + + + A rod-shpaed cell that forms a single row adjacent to and supporting the inner hair cells. + GOC:tfm + http://www.theodora.com/anatomy/the_internal_ear_or_labyrinth.html + + + + + + + + + A rod-shaped cell found in 3 or 4 rows that lie adjacent to and support the outer hair cells. + tmeehan + 2010-08-25T11:05:23Z + FMA:75727 + cell + external pillar cell of cochlea + + + + + A rod-shaped cell found in 3 or 4 rows that lie adjacent to and support the outer hair cells. + GOC:tfm + http://www.theodora.com/anatomy/the_internal_ear_or_labyrinth.html + + + + + + + + + A supporting cell that is attached to the basement membrane and forms rows that support the hair cells. + tmeehan + 2010-08-25T01:29:07Z + FMA:79800 + cell + phalangeal cell + + + + + A supporting cell that is attached to the basement membrane and forms rows that support the hair cells. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + An epithelial cell that remains from the disintegration of the epithelial root sheath involved in the development of teeth. + tmeehan + 2010-08-26T08:51:27Z + FMA:62987 + epithelial cell rests of Malassez + epithelial debris of Malassez + cell + epithelial cell of Malassez + + + + + + true + + + + + An epithelial cell that remains from the disintegration of the epithelial root sheath involved in the development of teeth. + GOC:tfm + ISBN:0517223651 + ISBN:0815129521 + + + + + + + + + + + + + + + + + + + + + A specialized cell involved in sensory perception of smell. + tmeehan + 2010-08-26T01:47:13Z + FMA:67870 + cell + olfactory epithelial cell + + + + + A specialized cell involved in sensory perception of smell. + GOC:tfm + PMID:7143026 + + + + + + + + + A border cell is a slender columnar cell on the medial portion of the basilar membrane. + tmeehan + 2010-08-25T01:47:12Z + FMA:79798 + cell + border cell of cochlea + + + + + A border cell is a slender columnar cell on the medial portion of the basilar membrane. + FMA:0412046911 + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell located on the basal lamina of the olfactory epithelium. + tmeehan + 2010-08-26T01:58:54Z + CL:1000395 + horizontal basal call + FMA:62303 + cell + basal cell of olfactory epithelium + + + + + + true + + + + + An epithelial cell located on the basal lamina of the olfactory epithelium. + GOC:tfm + PMID:7143026 + + + + + + + + + + + + + + + + + + + + + + + + + + + A keratinized cell located in the hard palate or gingiva. + tmeehan + 2010-08-26T02:51:30Z + cell + keratinized cell of the oral mucosa + + + + + A keratinized cell located in the hard palate or gingiva. + GOC:tfm + PMID:12014572 + + + + + + + + + A rounded or elliptical epithelial cell, with pale-staining open face nucleus and pale cytoplasm rich in free ribosomes and clusters of centrioles; form a distinct basal zone spaced slightly from the basal surface of the epithelium. + tmeehan + 2010-08-26T01:59:18Z + FMA:67874 + blastema cell of olfactory epithelium + cell + globose cell of olfactory epithelium + + + + + A rounded or elliptical epithelial cell, with pale-staining open face nucleus and pale cytoplasm rich in free ribosomes and clusters of centrioles; form a distinct basal zone spaced slightly from the basal surface of the epithelium. + GOC:tfm + PMID:17468753 + + + + + + + + + + + + + + + A long, spindle-shaped supporting cells arranged in parallel rows that secretes components of the tectorial membrane and potassium ions into the endolymph. + tmeehan + 2010-08-25T02:02:48Z + FMA:79797 + interdental cell + cell + interdental cell of cochlea + + + + + A long, spindle-shaped supporting cells arranged in parallel rows that secretes components of the tectorial membrane and potassium ions into the endolymph. + GOC:tfm + MP:0004482 + PMID:2111803 + + + + + + + + + + + + + + + + + + + + + + A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells. + tmeehan + 2010-08-25T02:20:55Z + FMA:84143 + KUPO:0001033 + Goormaghtigh cell + polar cushion cells + cell + lacis cell + extraglomerular mesangial cell + + + + + + true + + + + + + true + + + + + A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells. + GOC:tfm + ISBN:0412046911 + http:/www.copewithcytokines.de/cope.cgi?key=Lacis%20cells + + + + + + + + + A cell within the follicle of an ovary. + tmeehan + 2010-08-25T03:01:27Z + EMAPA:31247 + FMA:70589 + cell + follicular cell of ovary + + + + + A cell within the follicle of an ovary. + GOC:tfm + + + + + + + + + A cell within the primary follicle of the ovary. + tmeehan + 2010-08-25T03:03:42Z + FMA:70590 + cell + primary follicular cell of ovary + + + + + A cell within the primary follicle of the ovary. + GOC:tfm + + + + + + + + + A cell of a secondary follicile within the ovary. + tmeehan + 2010-08-25T03:03:48Z + FMA:70591 + cell + secondary follicular cell of ovary + + + + + A cell of a secondary follicile within the ovary. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A supporting cell of the anterior pituitary gland involved in trophic and catabolic processes; expresses a broad spectrum of cytokeratins indicative of their epithelial nature. + tmeehan + 2010-08-25T03:10:10Z + FMA:83102 + folliculostellate cell of pars anterior of adenohypophysis + cell + folliculostellate cell of pars distalis of adenohypophysis + + + + + + true + + + + + A supporting cell of the anterior pituitary gland involved in trophic and catabolic processes; expresses a broad spectrum of cytokeratins indicative of their epithelial nature. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell found in the lining of the stomach. + tmeehan + 2010-08-25T03:22:08Z + CL:1000399 + FMA:62948 + cell + epithelial cell of stomach + + + + + + true + + + + + An epithelial cell found in the lining of the stomach. + GOC:tfm + + + + + + + + + An epithelial cell within one of the pits in the embryonic gastric mucosa from which the gastric glands develop . + tmeehan + 2010-08-25T03:23:22Z + FMA:86552 + cell + foveolar cell of stomach + + + + + An epithelial cell within one of the pits in the embryonic gastric mucosa from which the gastric glands develop . + GOC:tfm + http://www.merriam-webster.com/medical/foveolar + + + + + + + + + + + + + + + + + + + + + A mucous cell in the epithelium of the stomach. + tmeehan + 2010-08-25T03:38:51Z + CL:1000404 + FMA:63464 + cell + mucous cell of stomach + + + + + + true + + + + + A mucous cell in the epithelium of the stomach. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A neck cell that secretes mucus within the stomach. Its products are distinct histochemically from those of the surface mucous cells of stomach. + tmeehan + 2010-08-25T03:41:30Z + CL:1000401 + FMA:62954 + cell + mucus neck cell of gastric gland + + + + + + true + + + + + + true + + + + + A neck cell that secretes mucus within the stomach. Its products are distinct histochemically from those of the surface mucous cells of stomach. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + A simple columnar cell that populates the entire luminal surface including the gastric pits. This cell types secrete mucus to form a thick protective, lubricant layer over the gastric wall. + tmeehan + 2010-08-25T03:45:10Z + FMA:62949 + cell + surface mucosal cell of stomach + + + + + A simple columnar cell that populates the entire luminal surface including the gastric pits. This cell types secrete mucus to form a thick protective, lubricant layer over the gastric wall. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit. + tmeehan + 2010-08-25T03:57:08Z + CL:1000400 + FMA:62953 + cell + stem cell of gastric gland + + + + + + true + + + + + A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells; lie in contact with the basal lamina of olfactory epithelium. + tmeehan + 2010-08-26T01:59:22Z + FMA:62304 + horizontal basal cells + cell + basal proper cell of olfactory epithelium + + + + + A flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells; lie in contact with the basal lamina of olfactory epithelium. + GOC:tfm + PMID:0517223651 + PMID:11891623 + + + + + + + + + + + + + + + + + + + + + A basally situated, mitotically active, columnar-shaped keratinocyte attached to the basement membrane. + tmeehan + 2010-08-26T03:12:49Z + CL:1000439 + FMA:70571 + cell + basal cell of epidermis + + + + + + true + + + + + A basally situated, mitotically active, columnar-shaped keratinocyte attached to the basement membrane. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + An endothelial cell found in the glomerulus of the kidney. This cell is flattened, highly fenestrated, and plays a vital role in the formation of glomerular ultrafiltrate. + tmeehan + 2010-08-26T10:59:44Z + BTO:0004632 + FMA:70970 + cell + glomerular endothelial cell + + + + + + true + + + + + An endothelial cell found in the glomerulus of the kidney. This cell is flattened, highly fenestrated, and plays a vital role in the formation of glomerular ultrafiltrate. + GOC:tfm + PMID:15840009 + + + + + + + + + A keratinocyte of the epidermis that is characterized by containing granules of keratohyalin and lamellar granules. + tmeehan + 2010-08-26T03:19:00Z + FMA:70543 + cell + granular cell of epidermis + + + + + A keratinocyte of the epidermis that is characterized by containing granules of keratohyalin and lamellar granules. + ISBN:1416031855 + + + + + + + + + A flat keratinocyte immediately below the cornified layer. + tmeehan + 2010-08-26T03:37:02Z + FMA:86925 + cell + squamous cell of epidermis + + + + + A flat keratinocyte immediately below the cornified layer. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + A cell involved in the formation of a granulocyte. + tmeehan + 2010-08-30T12:54:27Z + FMA:83519 + cell + granulocytopoietic cell + + + + + + true + + + + + A cell involved in the formation of a granulocyte. + GOC:tfm + + + + + + + + + + + + + + + A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and a band form cell. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. + tmeehan + 2010-08-30T01:08:15Z + FMA:83541 + cell + metamyelocyte + + + + + A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and a band form cell. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. + GOC:tfm + ISBN:0721601464 + http://en.wikipedia.org/wiki/Metamyelocyte + + + + + + + + + + + + + + + A cell type that is the first of the maturation stages of the granulocytic leukocytes normally found in the bone marrow. Granules are seen in the cytoplasm. The nuclear material of the myelocyte is denser than that of the myeloblast but lacks a definable membrane. The cell is flat and contains increasing numbers of granules as maturation progresses. + tmeehan + 2010-08-30T01:08:19Z + BTO:0000734 + FMA:83525 + cell + myelocyte + + + + + A cell type that is the first of the maturation stages of the granulocytic leukocytes normally found in the bone marrow. Granules are seen in the cytoplasm. The nuclear material of the myelocyte is denser than that of the myeloblast but lacks a definable membrane. The cell is flat and contains increasing numbers of granules as maturation progresses. + GOC:tfm + ISBN:0323052908 + http://en.wikipedia.org/wiki/Myelocyte + + + + + + + + + + + + + + + + + + + + A cell involved in the formation of a monocyte (monopoiesis). + tmeehan + 2010-08-30T01:27:48Z + FMA:83552 + cell + monopoietic cell + + + + + + true + + + + + A cell involved in the formation of a monocyte (monopoiesis). + GOC:tfm + + + + + + + + + + + + + + + + + + + + A stem cell that can give rise to the cells of the liver. + tmeehan + 2010-08-30T02:00:42Z + FMA:86577 + cell + hepatic stem cell + + + + + + true + + + + + A stem cell that can give rise to the cells of the liver. + GOC:tfm + + + + + + + + + A transient hepatic stem cell observed after liver injury with a high nuclear to cytoplasm ratio that can differentiate into mature hepatocytes and bile duct cells. Arises from more than one tissue. + tmeehan + 2010-08-30T02:01:49Z + CL:1000036 + BTO:0004270 + FMA:86576 + hepatic oval cell + cell + hepatic oval stem cell + + + + + A transient hepatic stem cell observed after liver injury with a high nuclear to cytoplasm ratio that can differentiate into mature hepatocytes and bile duct cells. Arises from more than one tissue. + PMID:17901986 + + + + + + + + + A parathyroid chief cell that is not actively secreting hormone. Contains small Golgi complexes with only a few grouped vesicles and membrane-bound secretory granules; glycogen and many lipofuscin granules abound but sacs of granular endoplasmic reticulum are rare and dispersed. In normal humans, inactive chief cells out number active chief cells in a ratio of 3-5:1. + tmeehan + 2010-09-02T11:14:01Z + cell + inactive chief cell of parathyoid gland + + + + + A parathyroid chief cell that is not actively secreting hormone. Contains small Golgi complexes with only a few grouped vesicles and membrane-bound secretory granules; glycogen and many lipofuscin granules abound but sacs of granular endoplasmic reticulum are rare and dispersed. In normal humans, inactive chief cells out number active chief cells in a ratio of 3-5:1. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A large epithelial cell with an extremely acidophilic and granular cytoplasm, containing vast numbers of mitochondria; such cells may undergo neoplastic transformation. From the Greek word onkos meaning swelling, this cell type is found in parathyroid, salivary and thyroid glands. + tmeehan + 2010-09-02T11:26:49Z + FMA:67606 + oxyphil + cell + oncocyte + + + + + A large epithelial cell with an extremely acidophilic and granular cytoplasm, containing vast numbers of mitochondria; such cells may undergo neoplastic transformation. From the Greek word onkos meaning swelling, this cell type is found in parathyroid, salivary and thyroid glands. + GOC:tfm + ISBN:0721662544 + PMID:20013317 + + + + + + + + + + An oncocyte located in the parathyroid gland. + tmeehan + 2010-09-02T11:33:23Z + FMA:69084 + cell + oxyphil cell of parathyroid gland + + + + + An oncocyte located in the parathyroid gland. + PMID:20013317 + + + + + + + + + + + + + + + + + + + An oncocyte located in the thyroid. + tmeehan + 2010-09-02T11:33:26Z + FMA:87169 + Askanazy cells + Hurthle cells + cell + oxyphil cell of thyroid + + + + + An oncocyte located in the thyroid. + GOC:tfm + PMID:20013317 + + + + + + + + + A renal intercalated cell that secretes base and reabsorbs acid in the coritcal collecting duct to mantain acid/base balance. + tmeehan + 2010-09-02T01:43:55Z + cell + renal beta-intercalated cell + + + + + A renal intercalated cell that secretes base and reabsorbs acid in the coritcal collecting duct to mantain acid/base balance. + GOC:tfm + PMID:11781354 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the tracheobronchial tree. + tmeehan + 2010-09-02T02:09:14Z + CL:1000407 + FMA:66816 + cell + epithelial cell of tracheobronchial tree + + + + + An epithelial cell of the tracheobronchial tree. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + Brush cell found in the epithelial layer of the colon. + tmeehan + 2010-09-02T02:20:50Z + CL:1000387 + FMA:263222 + cell + Brush cells are a distinct cell type from brush border cell-types. + Brush cell of epithelium proper of large intestine + + + + + Brush cell found in the epithelial layer of the colon. + GOC:tfm + + + + + + + + + A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known. + tmeehan + 2010-09-02T02:28:53Z + FMA:67978 + caveolated cell + fibrillovesicular cell + multivesicular cell + tuft cell + cell + brush cell + + + + + A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known. + GOC:tfm + ISBN:0517223651 + PMID:15817800 + + + + + + + + + + + + + + + + + + + A brush cell found in the epithelium of lobular bronchiole. + tmeehan + 2010-09-02T02:38:34Z + CL:1000386 + FMA:263220 + cell + brush cell of lobular bronchiole + + + + + A brush cell found in the epithelium of lobular bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A brush cell of the epithelium in the terminal bronchiole. + tmeehan + 2010-09-02T02:38:36Z + CL:1000390 + FMA:263228 + cell + brush cell of terminal bronchiole + + + + + + true + + + + + + true + + + + + A brush cell of the epithelium in the terminal bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + Brush cell of the epithelium in the trachea. + tmeehan + 2010-09-02T02:38:37Z + CL:1000388 + FMA:263224 + cell + brush cell of trachea + + + + + + true + + + + + + true + + + + + Brush cell of the epithelium in the trachea. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A brush cell found in the epithelium of bronchus. + tmeehan + 2010-09-02T02:38:42Z + CL:1000389 + FMA:263226 + cell + brush cell of bronchus + + + + + + true + + + + + + true + + + + + A brush cell found in the epithelium of bronchus. + GOC:tfm + + + + + + + + + An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells. + tmeehan + 2010-09-02T02:53:59Z + FMA:69060 + undifferentiated columnar cell of tracheobronchial tree + cell + intermediate epitheliocyte + + + + + An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A slow muscle cell that contains high levels of myoglobin and oxygen storing proteins giving the cell a red appearance. + tmeehan + 2010-09-02T03:20:03Z + FMA:84448 + oxidative muscle fiber + red muscle fiber + cell + red muscle cell + + + + + A slow muscle cell that contains high levels of myoglobin and oxygen storing proteins giving the cell a red appearance. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + A slow muscle cell that has large amounts of myoglobin, stores energy as triglycerides, generates ATP by the oxidative method and is resistant to fatigue. + tmeehan + 2010-09-02T03:24:05Z + BTO:0001812 + CALOHA:TS-0940 + FMA:84413 + MESH:A02.633.565.700 + slow twitch fiber + slow twitch muscle cell + type 1 muscle cell + type 1 muscle fiber + type I muscle fiber + cell + intermediate muscle fiber + slow twitch muscle fiber + slow-twitch muscle fiber + type I muscle cell + + + + + A slow muscle cell that has large amounts of myoglobin, stores energy as triglycerides, generates ATP by the oxidative method and is resistant to fatigue. + GOC:tfm + ISBN:0517223651 + + + + + intermediate muscle fiber + MESH:A02.633.565.700 + + + + + slow twitch muscle fiber + MESH:A02.633.565.700 + + + + + slow-twitch muscle fiber + MESH:A02.633.565.700 + + + + + + + + + A fast muscle fiber cell that stores energy in the form of glycogen and creatine phosphate. + tmeehan + 2010-09-02T03:28:45Z + BTO:0001813 + FMA:84414 + type 2 muscle cell + type 2 muscle fiber + type II muscle fiber + cell + type II muscle cell + + + + + A fast muscle fiber cell that stores energy in the form of glycogen and creatine phosphate. + GOC:tfm + + + + + + + + + A muscle cell with low content of myoglobin and other oxygen storing proteins. This muscle cell has a white appearance. + tmeehan + 2010-09-02T03:28:48Z + FMA:84449 + cell + white muscle cell + + + + + A muscle cell with low content of myoglobin and other oxygen storing proteins. This muscle cell has a white appearance. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + A type II muscle cell that contains large amounts of myoglobin, has many mitochondria and very many blood capillaries. Type II A cells are red, have a very high capacity for generating ATP by oxidative metabolic processes, split ATP at a very rapid rate, have a fast contraction velocity and are resistant to fatigue. + tmeehan + 2010-09-02T03:31:38Z + BTO:0001813 + FMA:84415 + fast twitch A + fatigue resistant fast twitch muscle cell + type 2a muscle cell + type 2a muscle fiber + type IIa muscle fiber + cell + type IIa muscle cell + + + + + A type II muscle cell that contains large amounts of myoglobin, has many mitochondria and very many blood capillaries. Type II A cells are red, have a very high capacity for generating ATP by oxidative metabolic processes, split ATP at a very rapid rate, have a fast contraction velocity and are resistant to fatigue. + GOC:tfm + + + + + + + + + + A type II muscle cell that contains a low content of myoglobin, relatively few mitochondria, relatively few blood capillaries and large amounts of glycogen. Type II B fibres are white, geared to generate ATP by anaerobic metabolic processes, not able to supply skeletal muscle fibres continuously with sufficient ATP, fatigue easily, split ATP at a fast rate and have a fast contraction velocity. + tmeehan + 2010-09-02T03:31:42Z + FMA:84416 + type 2b muscle cell + type 2b muscle fiber + type IIb muscle fiber + cell + type IIb muscle cell + + + + + A type II muscle cell that contains a low content of myoglobin, relatively few mitochondria, relatively few blood capillaries and large amounts of glycogen. Type II B fibres are white, geared to generate ATP by anaerobic metabolic processes, not able to supply skeletal muscle fibres continuously with sufficient ATP, fatigue easily, split ATP at a fast rate and have a fast contraction velocity. + GOC:tfm + ISBN:0517223651 + http://en.wikipedia.org/wiki/Skeletal_muscle + + + + + + + + + An intermediate muscle cell that has characteristics of both fast and slow muscle cells. + tmeehan + 2010-09-02T03:51:17Z + FMA:84450 + cell + intermediate muscle cell + + + + + An intermediate muscle cell that has characteristics of both fast and slow muscle cells. + GOC:tfm + + + + + + + + + A trophoblast that leaves the placenta and invades the endometrium and myometrium. This cell type is crucial in increasing blood flow to the fetus. + tmeehan + 2010-09-02T04:04:36Z + BTO:0002366 + FMA:86564 + cell + intermediate trophoblast cell + + + + + A trophoblast that leaves the placenta and invades the endometrium and myometrium. This cell type is crucial in increasing blood flow to the fetus. + GOC:tfm + http://www.med.yale.edu/obgyn/kliman/placenta/articles/EOR_Placenta/Trophtoplacenta.html + + + + + + + + + A double negative thymocyte that has a T cell receptor consisting of a gamma chain that has as part a Vgamma3 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. This cell-type is found in the fetal thymus with highest numbers occurring at E17-E18. + tmeehan + 2010-10-07T01:58:00Z + immature DEC precursor + immature DETC precursor + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + immature dendritic epithelial T cell precursor + + + + + A double negative thymocyte that has a T cell receptor consisting of a gamma chain that has as part a Vgamma3 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. This cell-type is found in the fetal thymus with highest numbers occurring at E17-E18. + GOC:tfm + http://www.immgen.org + + + + + + + + + A trophoblast found at the junction of the placenta. This cell type makes a unique fibronectin-trophouteronectin junction that helps mediate attachment of the placenta to the uterus. This cell type is also found junction of the chorion layer of the external membranes and the decidua. + tmeehan + 2010-09-02T04:14:28Z + cell + anchoring trophoblast + + + + + A trophoblast found at the junction of the placenta. This cell type makes a unique fibronectin-trophouteronectin junction that helps mediate attachment of the placenta to the uterus. This cell type is also found junction of the chorion layer of the external membranes and the decidua. + GOC:tfm + http://www.med.yale.edu/obgyn/kliman/placenta/articles/EOR_Placenta/Trophtoplacenta.html + + + + + + + + + A cell located between the pinealocytes. + tmeehan + 2010-09-02T04:28:41Z + FMA:86575 + cell + interstitial cell of pineal gland + + + + + A cell located between the pinealocytes. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + A squamous cell that has keratin in the esophagus. + tmeehan + 2010-09-07T10:11:06Z + FMA:86549 + cell + keratinized squamous cell of esophagus + + + + + A squamous cell that has keratin in the esophagus. + GOC:tfm + PMID:11694559 + + + + + + + + + + + + + + + + + A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye. + tmeehan + 2010-09-07T10:38:03Z + FMA:70950 + cell + vertebrate lens cell + + + + + A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye. + GOC:tfm + ISBN:0721662544 + + + + + + + + + A cell of the transparent layer of simple cuboidal epithelium over the anterior surface of the lens; transform into lens fiber(s). + tmeehan + 2010-09-07T10:45:45Z + FMA:63181 + cell + anterior lens cell + + + + + A cell of the transparent layer of simple cuboidal epithelium over the anterior surface of the lens; transform into lens fiber(s). + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth. + tmeehan + 2010-09-07T10:45:47Z + FMA:67559 + cell + lens epithelial cell + + + + + + true + + + + + A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth. + GOC:tfm + ISBN:0721662544 + http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium + + + + + + + + + + + + + + + A lens fiber cell that develops from primary lens fiber; located towards the center of lens; cell organelles are normally degraded or in the process of being degraded. + tmeehan + 2010-09-07T10:53:39Z + secondary lens fibre + cell + secondary lens fiber + + + + + A lens fiber cell that develops from primary lens fiber; located towards the center of lens; cell organelles are normally degraded or in the process of being degraded. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + A secondary lens fiber cell that lacks a nucleus. + tmeehan + 2010-09-07T11:15:23Z + FMA:67561 + non-nucleated secondary lens fibre + cell + non-nucleated secondary lens fiber + + + + + A secondary lens fiber cell that lacks a nucleus. + GOC:tfm + + + + + + + + + A secondary fiber cell that contains a nucleus. + tmeehan + 2010-09-07T11:15:26Z + FMA:70949 + nucleated secondary lens fibre + cell + nucleated secondary lens fiber + + + + + A secondary fiber cell that contains a nucleus. + GOC:tfm + + + + + + + + + + + + + + + An elongating cell that rapidly obliterates the lumen of the lens vesicle. Subsequently, differentiation of this cell type at the lens equator leads to the formation of secondary fiber cells that come to overlie the primary fibers. + tmeehan + 2010-09-07T11:19:01Z + FMA:70613 + primary lens fibre + cell + primary lens fiber + + + + + An elongating cell that rapidly obliterates the lumen of the lens vesicle. Subsequently, differentiation of this cell type at the lens equator leads to the formation of secondary fiber cells that come to overlie the primary fibers. + GOC:tfm + PMID:10711704 + + + + + + + + + A chief cell that is bigger than dark chief cells and has a larger and lighter nucleus and a cytoplasm with few granules. + tmeehan + 2010-09-07T11:46:54Z + FMA:69079 + cell + light chief cell of parathyroid gland + + + + + A chief cell that is bigger than dark chief cells and has a larger and lighter nucleus and a cytoplasm with few granules. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the prostate. + tmeehan + 2010-09-07T01:49:29Z + CL:1000295 + CL:1000408 + FMA:256163 + FMA:66817 + prostate epithelial cell + cell + epithelial cell of prostate + + + + + + true + + + + + An epithelial cell of the prostate. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell of prostatic duct. + tmeehan + 2010-09-07T01:55:51Z + CL:1000462 + FMA:74224 + ductal epithelial cell of prostate + cell + epithelial cell of prostatic duct + + + + + + true + + + + + An epithelial cell of prostatic duct. + GOC:tfm + + + + + ductal epithelial cell of prostate + FMA:74224 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the prostatic acinus. + tmeehan + 2010-09-07T01:55:53Z + CL:1000461 + FMA:74223 + acinar epithelial cell of prostate + cell + epithelial cell of prostatic acinus + + + + + + true + + + + + An epithelial cell of the prostatic acinus. + GOC:tfm + PMCID:PMC2673349 + + + + + acinar epithelial cell of prostate + FMA:74223 + + + + + + + + + + + + + + + + + + + A cell of the basal layer of the epithelium in the prostatic acinus. + tmeehan + 2010-09-07T01:59:08Z + CL:1000464 + FMA:74265 + basal epithelial cell of prostatic acinus + cell + basal cell of prostatic acinus + + + + + A cell of the basal layer of the epithelium in the prostatic acinus. + GOC:tfm + + + + + basal epithelial cell of prostatic acinus + FMA:74265 + + + + + + + + + + + + + + + + + + + A cell of the luminal layer of the epithelium in the prostatic acinus. + tmeehan + 2010-09-07T01:59:10Z + FMA:74266 + cell + luminal cell of prostatic acinus + + + + + A cell of the luminal layer of the epithelium in the prostatic acinus. + GOC:tfm + + + + + + + + + + + + + + + + + + + A cell that constitutes the basal layer of epithelium in the prostatic duct. + tmeehan + 2010-09-07T01:59:12Z + CL:1000463 + FMA:74226 + cell + basal epithelial cell of prostatic duct + + + + + A cell that constitutes the basal layer of epithelium in the prostatic duct. + GOC:tfm + PMID:15226377 + + + + + + + + + + + + + + + + + + + A cell that constitutes the luminal layer of epithelium of prostatic duct. + tmeehan + 2010-09-07T01:59:16Z + FMA:74225 + cell + luminal epithelial cell of prostatic duct + + + + + A cell that constitutes the luminal layer of epithelium of prostatic duct. + GOC:tfm + + + + + + + + + + + + + + + A primordial germ cell that is destined to become a male germ cell. + tmeehan + 2010-09-07T02:11:13Z + EHDAA2:0001053 + EMAPA:18686 + FMA:84771 + VHOG:0000662 + male primordial germ cell + testis primordial germ cell + cell + male gonocyte + + + + + A primordial germ cell that is destined to become a male germ cell. + GOC:tfm + + + + + testis primordial germ cell + VHOG:0000662 + + + + + + + + + + + + + + + A primordial cell from which an oocyte (ovum) ultimately is developed. + tmeehan + 2010-09-07T02:11:16Z + EHDAA2:0000505 + EMAPA:17965 + FMA:84772 + ISBN:0721662544 + VHOG:0000661 + ovary primordial germ cell + ovigerm + cell + ooblast + + + + + A primordial cell from which an oocyte (ovum) ultimately is developed. + GOC:tfm + + + + + ovary primordial germ cell + VHOG:0000661 + + + + + ovigerm + FMA:84772 + + + + + + + + + + + + + + + + + + + + A fibroblast in the bone marrow. + tmeehan + 2010-09-07T02:25:18Z + FMA:84377 + cell + marrow fibroblast + + + + + A fibroblast in the bone marrow. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + A fibroblasts found in interstitial spaces in the pulmonary tract. Greater numbers of these cells are found in idiopathic pulmonary fibrosis. + tmeehan + 2010-09-07T02:29:38Z + FMA:84467 + pulmonary myofibroblast + pulmonary septal cell + cell + pulmonary interstitial fibroblast + + + + + + true + + + + + A fibroblasts found in interstitial spaces in the pulmonary tract. Greater numbers of these cells are found in idiopathic pulmonary fibrosis. + GOC:tfm + + + + + + + + + + + + + + + + + + + A cell containing at least one nucleus. + tmeehan + 2010-09-07T03:32:33Z + FMA:67513 + cell + nucleate cell + + + + + A cell containing at least one nucleus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells. + tmeehan + 2010-09-08T08:53:42Z + FMA:70611 + smooth muscle fiber of sphincter of pupil + cell + smooth muscle fibre of sphincter of pupil + smooth muscle cell of sphincter of pupil + + + + + + true + + + + + A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells. + GOC:tfm + ISBN:0721662544 + ISBN:0721694128 + + + + + + + + + + + A nonstratified squamous cell located in the ectocervix. + tmeehan + 2010-09-08T09:12:23Z + FMA:86483 + ectocervical squamous cell + cell + squamous cell of ectocervix + + + + + A nonstratified squamous cell located in the ectocervix. + GOC:tfm + http://www.bu.edu/histology/p/19404loa.htm + + + + + + + + OBSOLETE: A lymphocyte that lacks T or B cell surface markers. + tmeehan + 2010-09-07T03:43:42Z + FMA:83601 + cell + obsolete null lymphocyte + true + + + + + OBSOLETE: A lymphocyte that lacks T or B cell surface markers. + GOC:tfm + ISBN:068340007X + + + + + + + + + + + + + + + + + + + + A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells). + tmeehan + 2010-09-07T03:57:09Z + BTO:0002669 + FMA:86711 + PBSC + cell + peripheral blood stem cell + + + + + + true + + + + + A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells). + GOC:tfm + + + + + + + + + A tissue macrophage that is in the pleural space. + tmeehan + 2010-09-07T04:16:43Z + FMA:83024 + cell + pleural macrophage + + + + + A tissue macrophage that is in the pleural space. + GOC:tfm + + + + + + + + + A pluripotent stem cell has the ability to form cells from all three germ layers (ectoderm, mesoderm, and endoderm). However, unlike totipotent stem cells, they cell can not generate all the cells of the whole organism such as placenta. + tmeehan + 2010-09-07T04:26:06Z + FMA:70570 + cell + pluripotent stem cell + + + + + A pluripotent stem cell has the ability to form cells from all three germ layers (ectoderm, mesoderm, and endoderm). However, unlike totipotent stem cells, they cell can not generate all the cells of the whole organism such as placenta. + GOC:tfm + PMID:19343304 + + + + + + + + + + A stem cell that can differentiate into a cardiac myocyte. + tmeehan + 2010-09-07T04:40:32Z + FMA:75620 + cell + primitive cardiac myocyte + + + + + A stem cell that can differentiate into a cardiac myocyte. + GOC:tfm + PMID:16938308 + + + + + + + + + + + + + + + + + + + + + A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells. + tmeehan + 2010-09-08T09:21:22Z + FMA:63379 + stem cell of intestinal crypt of Lieberkuhn + cell + intestinal crypt stem cell + + + + + A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus. + tmeehan + 2010-09-08T09:26:53Z + cell + epithelial cell of alimentary canal + + + + + An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus. + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the esophagus. + tmeehan + 2010-09-08T09:28:20Z + CL:1000402 + FMA:63071 + cell + epithelial cell of esophagus + + + + + + true + + + + + An epithelial cell of the esophagus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell of the large intestine. + tmeehan + 2010-09-08T09:28:22Z + CL:1000292 + BTO:0004297 + FMA:256157 + cell + epithelial cell of colon + epithelial cell of large intestine + + + + + + true + + + + + An epithelial cell of the large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell of the small intestine. + tmeehan + 2010-09-08T09:41:46Z + CL:1000293 + FMA:256159 + cell + epithelial cell of small intestine + + + + + + true + + + + + An epithelial cell of the small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that regulates growth and differentiation of the overlying epithelium. + tmeehan + 2010-09-08T09:50:04Z + CALOHA:TS-1266 + FMA:86490 + cell + stromal cell of endometrium + + + + + + true + + + + + An epithelial cell that regulates growth and differentiation of the overlying epithelium. + GOC:tfm + PMID:11331626 + + + + + + + + + + A supportive cell that has characteristics of glial cell. Processes of this cell envelope the junctions between glomus cells and nerve endings. + tmeehan + 2010-09-08T10:34:45Z + FMA:84188 + carotid body sustentacular cell + cell + supporting cell of carotid body + + + + + A supportive cell that has characteristics of glial cell. Processes of this cell envelope the junctions between glomus cells and nerve endings. + GOC:tfm + PMID:8985136 + http://www.copewithcytokines.de/cope.cgi?key=glomus%20cells + + + + + + + + + + + + + + + + + + + + + An epithelial cell of thyroid gland. + tmeehan + 2010-09-08T01:46:51Z + CL:1000297 + FMA:256167 + cell + epithelial cell of thyroid gland + + + + + + true + + + + + An epithelial cell of thyroid gland. + GOC:tfm + + + + + + + + + A cell type that varies from squamous to columnar, depending on their activity with microvillus directed luminally. This cell produces and secretes thyroid hormones. + tmeehan + 2010-09-08T01:50:08Z + BTO:0003736 + CALOHA:TS-1285 + FMA:68782 + follicular cell of thyroid gland + principal cell of thyroid gland + thyroid gland follicular cell + cell + thyroid follicular cell + + + + + A cell type that varies from squamous to columnar, depending on their activity with microvillus directed luminally. This cell produces and secretes thyroid hormones. + GOC:tfm + ISBN:0517223651 + + + + + + + + + The stem cell from which glial precursor cell arises from. + tmeehan + 2010-09-08T02:14:14Z + FMA:87171 + totipotent neuroepithelial stem cell + cell + neuroepithelial stem cell + + + + + The stem cell from which glial precursor cell arises from. + GOC:tfm + PMID:11687496 + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the parathyroid gland. + tmeehan + 2010-09-08T02:29:38Z + CL:1000429 + FMA:70547 + cell + epithelial cell of parathyroid gland + + + + + + true + + + + + An epithelial cell of the parathyroid gland. + GOC:tfm + + + + + + + + + An endothelial cell found in the mucosa associated with the facial skeleton. + tmeehan + 2010-09-14T10:40:12Z + CL:1000446 + FMA:70627 + cell + endothelial cell of viscerocranial mucosa + + + + + An endothelial cell found in the mucosa associated with the facial skeleton. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + + An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver. + tmeehan + 2010-09-14T10:57:26Z + CL:1000403 + FMA:63134 + cell + endothelial cell of sinusoid + + + + + + true + + + + + An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver. + GOC:tfm + ISBN:0618947256 + + + + + + + + + One of three types of epithelial cells that populate the parathyroid gland; cytological characteristics intermediate between those of the chief cell and of the oxyphil cell. Because only one hormone is produced, the three cell forms are widely believed to be different phases in the life cycle of a single cell type, with the chief cell being its physiologically active stage. + tmeehan + 2010-09-08T02:33:50Z + FMA:69324 + cell + transitional cell of parathyroid gland + + + + + One of three types of epithelial cells that populate the parathyroid gland; cytological characteristics intermediate between those of the chief cell and of the oxyphil cell. Because only one hormone is produced, the three cell forms are widely believed to be different phases in the life cycle of a single cell type, with the chief cell being its physiologically active stage. + GOC:tfm + ISBN:0412046911 + + + + + + + + + + + + + + + + + + + + A type of enteroendocrine cell found in the stomach that secretes glucagon. + tmeehan + 2010-09-10T10:54:42Z + FMA:83411 + cell + type A cell of stomach + + + + + A type of enteroendocrine cell found in the stomach that secretes glucagon. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A D cell located in the colon. + tmeehan + 2010-09-10T11:37:35Z + FMA:268744 + colon D-cell + colonc delta cell + delta cell of colon + cell + type D cell of colon + + + + + A D cell located in the colon. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A type D cell of the small intestine. + tmeehan + 2010-09-10T01:34:22Z + FMA:268736 + delta cell of small intestine + small intestine D-cell + small intestine delta cell + cell + type D cell of small intestine + + + + + A type D cell of the small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A type D cell found in the stomach. + tmeehan + 2010-09-10T01:36:03Z + FMA:83410 + delta cell of stomach + stomach D-cell + stomach delta cell + cell + type D cell of stomach + + + + + A type D cell found in the stomach. + GOC:tfm + + + + + + + + + + + An enteroendocrine cell that stores and secretes Ghrelin. + tmeehan + 2010-09-10T01:47:45Z + FMA:63207 + FMA:63418 + cell + P/D1 enteroendocrine cell + + + + + An enteroendocrine cell that stores and secretes Ghrelin. + GOC:tfm + ISBN:0517223651 + PMID:15153415 + + + + + + + + + An endocrine cell that secretes vasoactive intestinal peptide. + tmeehan + 2010-09-10T01:52:20Z + cell + vasoactive intestinal peptide secreting cell + + + + + An endocrine cell that secretes vasoactive intestinal peptide. + GOC:tfm + + + + + + + + + + A type EC enteroendocrine cell in the duodenum and jejunum that stores and secretes motilin and 5-hydroxytryptamine. + tmeehan + 2010-09-10T02:13:47Z + Mo enteroendocrine cell + FMA:62941 + cell + type EC2 enteroendocrine cell + + + + + A type EC enteroendocrine cell in the duodenum and jejunum that stores and secretes motilin and 5-hydroxytryptamine. + GOC:tfm + ISBN:0517223651 + PMID:15153415 + + + + + + + + + + A type EC enteredocrine cell in the intestines that stores and secretes substance P and 5-hydroxytryptamine. + tmeehan + 2010-09-10T02:13:49Z + FMA:62940 + cell + type EC1 enteroendocrine cell + + + + + A type EC enteredocrine cell in the intestines that stores and secretes substance P and 5-hydroxytryptamine. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A cell that secretes motilin, a gastric hormone that at low pH inhibits gastric motor activity, whereas at high pH has a stimulating effect. + tmeehan + 2010-09-10T02:31:13Z + cell + motilin secreting cell + + + + + A cell that secretes motilin, a gastric hormone that at low pH inhibits gastric motor activity, whereas at high pH has a stimulating effect. + GOC:tfm + MESH:D06.472.317.525 + + + + + + + + + + A type EC enteroendocrine cell type that is numerous in the fundus of the stomach; stores 5-hydroxytryptamine and histamine. + tmeehan + 2010-09-10T02:35:17Z + FMA:63208 + cell + type ECL enteroendocrine cell + + + + + A type EC enteroendocrine cell type that is numerous in the fundus of the stomach; stores 5-hydroxytryptamine and histamine. + GOC:tfm + ISBN:0517223651 + PMID:15153415 + + + + + + + + + + + + + + + + + + + + A cell type that secretes histamine. + tmeehan + 2010-09-10T03:04:42Z + cell + histamine secreting cell + + + + + A cell type that secretes histamine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + A PP cell located in the islets of the pancreas. + tmeehan + 2010-09-10T03:30:31Z + BTO:0000805 + FMA:70588 + PP cell of pancreatic islet + PP-cell of pancreatic islet + pancreatic polypeptide-secreting cell + cell + The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell. + pancreatic PP cell + + + + + A PP cell located in the islets of the pancreas. + GOC:tfm + + + + + + + + OBSOLETE: A PP cell located in the pancreatic acinus. Obsoleted due to a lack of published evidence that this cell type is actually found in the pancreatic acinus. + tmeehan + 2010-09-10T03:30:33Z + FMA:85400 + type F cell of pancreatic acinus + cell + obsolete PP cell of pancreatic acinus + true + + + + + OBSOLETE: A PP cell located in the pancreatic acinus. Obsoleted due to a lack of published evidence that this cell type is actually found in the pancreatic acinus. + GOC:tfm + + + + + + + + + + An enteroendocrine cell commonest in the duodenum and jejunum, rare in ileum, that secretes cholecystokinin. This cell type is involved in the regulation of digestive enzymes and bile. + tmeehan + 2010-09-10T03:44:36Z + FMA:62937 + CCK cell + cell + type I enteroendocrine cell + + + + + An enteroendocrine cell commonest in the duodenum and jejunum, rare in ileum, that secretes cholecystokinin. This cell type is involved in the regulation of digestive enzymes and bile. + GOC:tfm + + + + + + + + + + An enteroendocrine cell of duodenum and jejunum that produces gastric inhibitory peptide. + tmeehan + 2010-09-10T03:51:47Z + FMA:62942 + type K enteroendocrine cell + cell + GIP cell + + + + + An enteroendocrine cell of duodenum and jejunum that produces gastric inhibitory peptide. + GOC:tfm + + + + + + + + + + A enteroendocrine cell type that is numerous in ileum, present in jejunum and large intestine, few in duodenum. This cell type produces glucagon-like immunoreactants (glicentin, glucagon-37, glucagon-29, GLP-1 and -2) and PYY. + tmeehan + 2010-09-10T03:59:09Z + FMA:62944 + cell + type L enteroendocrine cell + + + + + A enteroendocrine cell type that is numerous in ileum, present in jejunum and large intestine, few in duodenum. This cell type produces glucagon-like immunoreactants (glicentin, glucagon-37, glucagon-29, GLP-1 and -2) and PYY. + ISBN:0517223651 + PMID:15153415 + + + + + + + + + + An enteroendorcine cell found in the ileum and jejunum that produces neurotensin. + tmeehan + 2010-09-10T04:08:29Z + FMA:62943 + N cell + cell + type N enteroendocrine cell + + + + + An enteroendorcine cell found in the ileum and jejunum that produces neurotensin. + GOC:tfm + + + + + + + + + + + Scattered in duodenojejunal mucosa, this enteroendocrine cell secretes secretin and serotonin. + tmeehan + 2010-09-10T04:44:46Z + FMA:62936 + cell + type S enteroendocrine cell + + + + + Scattered in duodenojejunal mucosa, this enteroendocrine cell secretes secretin and serotonin. + GOC:tfm + PMID:15153415 + + + + + + + + + + An enteroendocrine cell which produces a gastrin- and cholecystokinin-like peptide. The apical microvilli-rich plasma membrane is in open contact with the small intestine mucosa. This cell type is devoid of gastrin-17 but contains other fragments of the gastrin polypeptide. + tmeehan + 2010-09-13T09:48:34Z + FMA:63421 + cell + type TG enteroendocrine cell + + + + + An enteroendocrine cell which produces a gastrin- and cholecystokinin-like peptide. The apical microvilli-rich plasma membrane is in open contact with the small intestine mucosa. This cell type is devoid of gastrin-17 but contains other fragments of the gastrin polypeptide. + DOI:10.1007/978-3-211-99390-3 + GOC:tfm + PMID:7013499 + + + + + + + + + An epithelial cell of the mucosa associated with facial skeleton. + tmeehan + 2010-09-14T11:04:02Z + CL:1000440 + FMA:70581 + cell + ecto-epithelial cell of viscerocranial mucosa + + + + + An epithelial cell of the mucosa associated with facial skeleton. + GOC:tfm + ISBN:0323052908 + + + + + + + + + + An enteroendorcine cell found in the fundus and pylorus, this cell type has dense round secretory granules that contain ghrelin. + tmeehan + 2010-09-13T10:12:12Z + FMA:63209 + A-like + X/A-like + cell + type X enteroendocrine cell + + + + + An enteroendorcine cell found in the fundus and pylorus, this cell type has dense round secretory granules that contain ghrelin. + GOC:tfm + PMID:20616512 + + + + + + + + + + A taste receptor cell that is characterized by morphologically identifiable synaptic contacts with the gustatory nerve fibers and expression of the synaptic membrane protein-25 (SNAP-25) and NCAM. + tmeehan + 2010-09-13T10:57:21Z + taste bud basal cell + FMA:67940 + type 3 taste cell + cell + type III taste bud cell + + + + + A taste receptor cell that is characterized by morphologically identifiable synaptic contacts with the gustatory nerve fibers and expression of the synaptic membrane protein-25 (SNAP-25) and NCAM. + GOC:tfm + ISBN:0517223651 + PMID:15738192 + + + + + + + + + A taste receptor cell that has a short microvilli, a projecting apical region, a large rounded nucleus, and expresses taste chemoreceptors thus making them the transducing cell for taste qualities. + tmeehan + 2010-09-13T10:57:26Z + FMA:62381 + type 2 taste cell + cell + type II taste cell + + + + + A taste receptor cell that has a short microvilli, a projecting apical region, a large rounded nucleus, and expresses taste chemoreceptors thus making them the transducing cell for taste qualities. + GOC:tfm + PMID:15738192 + + + + + + + + + + A rounded, mitotically active stem cell which is the source of new cells of the taste bud; located basally. + tmeehan + 2010-09-13T10:57:29Z + taste bud basal cell + FMA:62380 + type 4 taste cell + cell + There is debate about the exact lineage of these cell types from this progenitor. See PMID:15738192. + type IV taste receptor cell + + + + + A rounded, mitotically active stem cell which is the source of new cells of the taste bud; located basally. + GOC:tfm + ISBN:0517223651 + PMID:15738192 + + + + + + + + + A cell type that forms the boundary with the surrounding epithelium. + tmeehan + 2010-09-13T10:57:31Z + FMA:67941 + cell + type V taste receptor cell + + + + + A cell type that forms the boundary with the surrounding epithelium. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + A densely staining taste receptor cell that contains many dense vacuoles in their apical regions which project into the apical space and bear microvilli. This cell type serves as a supporting cell by surrounding and isolating the other cell types from each other; secrete a dense amorphous material that surrounds the microvilli in the taste pore. This cell type expresses a glial glutumate transporter, GLAST. + tmeehan + 2010-09-13T10:57:35Z + FMA:62356 + dark tongue cell + type I taste cell + type taste 1 cell + cell + type I taste bud cell + + + + + A densely staining taste receptor cell that contains many dense vacuoles in their apical regions which project into the apical space and bear microvilli. This cell type serves as a supporting cell by surrounding and isolating the other cell types from each other; secrete a dense amorphous material that surrounds the microvilli in the taste pore. This cell type expresses a glial glutumate transporter, GLAST. + GOC:tfm + ISBN:0412046911 + ISBN:0517223651 + PMID:15738192 + + + + + + + + + A sperm bearing a Y chromosome. Chromosomal and genetic sex is established at fertilization in mammals and depends upon whether an X-bearing sperm or a Y-bearing sperm fertilizes the X-bearing ovum. + tmeehan + 2010-09-13T11:35:24Z + FMA:84058 + Y bearing sperm + Y-bearing sperm + cell + Y chromosome-bearing sperm cell + + + + + A sperm bearing a Y chromosome. Chromosomal and genetic sex is established at fertilization in mammals and depends upon whether an X-bearing sperm or a Y-bearing sperm fertilizes the X-bearing ovum. + GOC:tfm + ISBN:0721669743 + + + + + + + + + A sperm bearing an X chromosome. Chromosomal and genetic sex is established at fertilization in mammals and depends upon whether an X-bearing sperm or a Y-bearing sperm fertilizes the X-bearing ovum. + tmeehan + 2010-09-13T11:35:26Z + FMA:84057 + X bearing sperm + X-bearing sperm + cell + X chromosome-bearing sperm cell + + + + + A sperm bearing an X chromosome. Chromosomal and genetic sex is established at fertilization in mammals and depends upon whether an X-bearing sperm or a Y-bearing sperm fertilizes the X-bearing ovum. + GOC:tfm + ISBN:0721669743 + + + + + + + + + A round or oval neuroepithelial cell that contacts other type I cells or capillaries. They occur in clusters that are surrounded by sheath cells (type-II cells) in the carotid body. This cell type is capable of secreting a number of neurotransmitters. + tmeehan + 2010-09-13T01:40:21Z + FMA:84186 + glomus cell + cell + type I cell of carotid body + + + + + A round or oval neuroepithelial cell that contacts other type I cells or capillaries. They occur in clusters that are surrounded by sheath cells (type-II cells) in the carotid body. This cell type is capable of secreting a number of neurotransmitters. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies. + tmeehan + 2010-09-13T02:34:22Z + CL:1000459 + CALOHA:TS-1040 + FMA:72208 + epithelial cell of thymus gland + epithelial reticular cell + epithelial reticular cell of thymus + thymic epithelial cell + cell + epithelial cell of thymus + + + + + + true + + + + + An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies. + FMA:72208 + GOC:tfm + + + + + + + + + An epithelial cell with a well defined Golgi apparatus that makes up the continuous layer of cells bordering the thymic tissue beneath the capsule. + tmeehan + 2010-09-13T02:37:23Z + FMA:72209 + subcapsular thymic epithelial cell + cell + type-1 epithelial cell of thymus + + + + + An epithelial cell with a well defined Golgi apparatus that makes up the continuous layer of cells bordering the thymic tissue beneath the capsule. + GOC:tfm + PMID:9264335 + + + + + + + + + A thymic epithelial cell that has an eccentric, round, or irregularly shaped hetero or euchromatic nucleus. The hallmark of this cell type is the presence of vacuoles, which are clustered in one area of the cytoplasm in the vicinity of the nucleus. The vacuoles are small and acquire a grape-like form, occasionally showing delicate internal microvillous projections. + tmeehan + 2010-09-13T02:37:26Z + FMA:72214 + cystic thymic epithelial cells + large mTEC + large medullary thymic epithelial cells + cell + type-6 epithelial cell of thymus + + + + + A thymic epithelial cell that has an eccentric, round, or irregularly shaped hetero or euchromatic nucleus. The hallmark of this cell type is the presence of vacuoles, which are clustered in one area of the cytoplasm in the vicinity of the nucleus. The vacuoles are small and acquire a grape-like form, occasionally showing delicate internal microvillous projections. + GOC:tfm + PMID:19721455 + PMID:9264335 + + + + + + + + + + An epithelial cell with high nuclear and cytoplasmic electron-density. This cell type is found in the deeper portions of the cortex but is more abundant in the medulla of the thymus. + tmeehan + 2010-09-13T02:37:45Z + FMA:72212 + dark thymic epithelial cell + cell + type-4 epithelial cell of thymus + + + + + An epithelial cell with high nuclear and cytoplasmic electron-density. This cell type is found in the deeper portions of the cortex but is more abundant in the medulla of the thymus. + FMA:0412046911 + GOC:tfm + PMID:9264335 + + + + + + + + + A thymic epithelial cell with moderate nuclear and cytoplasmic electron-density. Scattered in the cortex, this cell type is predominant in the mid and deep cortex. + tmeehan + 2010-09-13T02:37:51Z + FMA:72211 + intermediate thymic epithelial cell + cell + type-3 epithelial cell of thymus + + + + + A thymic epithelial cell with moderate nuclear and cytoplasmic electron-density. Scattered in the cortex, this cell type is predominant in the mid and deep cortex. + PMID:9264335 + + + + + + + + + A thymic epithelial cell type with low nuclear and cytoplasmic electrondensity; has a round, euchromatic nucleus and occurs in small groups at the corticomedullary junction or scattered singly in the medulla. + tmeehan + 2010-09-13T02:37:54Z + FMA:72213 + undifferentiated mTEC + undifferentiated medullary thymic epithelial cell + undifferentiated thymic epithelial cell + cell + type-5 epithelial cell of thymus + + + + + A thymic epithelial cell type with low nuclear and cytoplasmic electrondensity; has a round, euchromatic nucleus and occurs in small groups at the corticomedullary junction or scattered singly in the medulla. + GOC:tfm + ISBN:0412046911 + PMID:19721455 + PMID:9264335 + + + + + + + + + An epithelial cell scattered in the cortex, predominant in the outer cortex with a large pale nucleus and a prominent nucleolus. + tmeehan + 2010-09-13T02:37:58Z + FMA:72210 + pale thymic epithelial cell + cell + type-2 epithelial cell of thymus + + + + + An epithelial cell scattered in the cortex, predominant in the outer cortex with a large pale nucleus and a prominent nucleolus. + GOC:tfm + ISBN:0412046911 + PMID:9264335 + + + + + + + + + A small medullary thymic epithelial cell with a spindle shape, often arranged in groups and connected to each other by large desmosomes and interdigitations. The cytoplasm is sparse, with scanty organelles and thick bundles of cytokeratin. + tmeehan + 2010-09-13T03:23:25Z + spindle shaped mTEC + spindle shaped medullary thymic epithelial cell + cell + type-7 epithelial cell of thymus + + + + + A small medullary thymic epithelial cell with a spindle shape, often arranged in groups and connected to each other by large desmosomes and interdigitations. The cytoplasm is sparse, with scanty organelles and thick bundles of cytokeratin. + GOC:tfm + PMID:19721455 + + + + + + + + + A synovial cell type that resembles fibroblasts, has abundant granular endoplasmic reticulum but contains fewer vacuoles and vesicles. This cell type secretes glycoproteins and hyaluronic acid. + tmeehan + 2010-09-13T03:39:14Z + FMA:66788 + cell + type B synovial cell + + + + + A synovial cell type that resembles fibroblasts, has abundant granular endoplasmic reticulum but contains fewer vacuoles and vesicles. This cell type secretes glycoproteins and hyaluronic acid. + GOC:tfm + ISBN:0517223651 + + + + + + + + + A synovial cell that is macrophage-like, characterized by surface ruffles or lamellipodia, plasma membrane invaginations and associated micropinocytotic vesicles, Golgi apparatus and little granular endoplasmic reticulum. + tmeehan + 2010-09-13T03:39:17Z + FMA:66787 + type A synoviocyte + cell + type A synovial cell + + + + + A synovial cell that is macrophage-like, characterized by surface ruffles or lamellipodia, plasma membrane invaginations and associated micropinocytotic vesicles, Golgi apparatus and little granular endoplasmic reticulum. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + A ciliated epithelial cell of the retina, this cell type uptakes sodium chloride and passes it to non-pigmented ciliary epithelial cells. + tmeehan + 2010-09-13T04:09:27Z + FMA:70606 + PE + cell + pigmented ciliary epithelial cell + + + + + A ciliated epithelial cell of the retina, this cell type uptakes sodium chloride and passes it to non-pigmented ciliary epithelial cells. + PMID:15106942 + + + + + + + + + + A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells. + tmeehan + 2010-09-13T04:09:31Z + FMA:70607 + NPE + cell + non-pigmented ciliary epithelial cell + + + + + A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells. + GOC:tfm + PMID:15106942 + + + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the distal convoluted tubule of the kidney that helps regulate systemic levels of potassium, sodium, calcium, and pH. + FMA:62125 + FMA:70981 + KUPO:0001055 + kidney distal tubule epithelial cell + cell + epithelial cell of distal tubule + + + + + + true + + + + + An epithelial cell of the distal convoluted tubule of the kidney that helps regulate systemic levels of potassium, sodium, calcium, and pH. + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the proximal tubule of the kidney. + FMA:62125 + FMA:70973 + KUPO:0001044 + kidney proximal tubule epithelial cell + cell + epithelial cell of proximal tubule + + + + + + true + + + + + An epithelial cell of the proximal tubule of the kidney. + GOC:tfm + ISBN:1-4160-2328-3 + + + + + + + + + + A brush border epithelial cell located in the proximal tubule of the kidney that detects fluid flow. + tmeehan + 2010-09-14T11:29:20Z + cell + brush border cell of the proximal tubule + + + + + A brush border epithelial cell located in the proximal tubule of the kidney that detects fluid flow. + GOC:tfm + ISBN:1-4160-2328-3 + + + + + + + + + + + + + + + + + + + + An epithelial cell of a skin gland. + tmeehan + 2010-09-14T12:00:07Z + FMA:70657 + epithelial cell of gland of skin + cell + epithelial cell of skin gland + + + + + An epithelial cell of a skin gland. + GOC:tfm + + + + + + + + + + A basophil chromphil cell of the anterior pitiutary gland that produce adrenocorticotropic hormone, melanocyte-stimulating hormone and lipotropin. This cell type is irregular in shape and has short dendritic processes which are inserted among other neighboring cells; + tmeehan + 2010-09-14T02:08:23Z + BTO:0002509 + FMA:83098 + cell + corticotroph + + + + + A basophil chromphil cell of the anterior pitiutary gland that produce adrenocorticotropic hormone, melanocyte-stimulating hormone and lipotropin. This cell type is irregular in shape and has short dendritic processes which are inserted among other neighboring cells; + GOC:tfm + ISBN:0517223651 + + + + + + + + + + + An acidophil cell of the anterior pitiuatry gland that produces both prolactin and growth hormone. + tmeehan + 2010-09-14T02:25:34Z + FMA:83097 + cell + mammosomatotroph + + + + + An acidophil cell of the anterior pitiuatry gland that produces both prolactin and growth hormone. + GOC:tfm + + + + + + + + + + An acidophilic cell of the anterior pituitary that produces prolactin. + tmeehan + 2010-09-14T02:30:57Z + FMA:83096 + epsilon-acidophil + lactotrope + lactotroph + lactotropic cell + mammotrope + mammotrophic cell + mammotropic cell + cell + mammotroph + + + + + An acidophilic cell of the anterior pituitary that produces prolactin. + SANBI:mhl + + + + + + + + + + An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin. + tmeehan + 2010-09-14T02:33:09Z + FMA:83095 + somatotrope + somatotropic cell + somatrophic cell + cell + somatotroph + + + + + An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin. + SANBI:mhl + + + + + + + + + + + + + + + + + + + + + + + + An ecto-epithelial cell of the prostate gland that secretes hormones. + tmeehan + 2010-09-14T03:01:58Z + CALOHA:TS-1280 + FMA:74390 + FMA:86774 + glandular cell of prostate + neuro-epithelial cell of prostate gland + cell + endocrine-paracrine cell of prostate gland + + + + + An ecto-epithelial cell of the prostate gland that secretes hormones. + GOC:tfm + + + + + + + + + An auditory epithelial support cell located in the vestibular epithelium that has many hallmarks of glial cells. This cell type express glial markers such as vimentin, S100, glutamate-aspartate transporter, low affinity neurotrophin receptor p75, glial fibrillary acidic protein, and proteolipid protein. + tmeehan + 2010-09-14T03:20:01Z + FMA:75809 + cell + external supporting cell of vestibular epithelium + + + + + An auditory epithelial support cell located in the vestibular epithelium that has many hallmarks of glial cells. This cell type express glial markers such as vimentin, S100, glutamate-aspartate transporter, low affinity neurotrophin receptor p75, glial fibrillary acidic protein, and proteolipid protein. + GOC:tfm + PMID:20837532 + + + + + + + + + + + + + + + + + + + An epithelial supporting cell located in the cochlea. + tmeehan + 2010-09-14T03:31:38Z + FMA:79796 + cell + supporting cell of cochlea + + + + + An epithelial supporting cell located in the cochlea. + GOC:tfm + + + + + + + + + + + + + + + + + + + A supporting cell of the vestibular epithelium. + tmeehan + 2010-09-14T03:31:44Z + FMA:75607 + cell + supporting cell of vestibular epithelium + + + + + A supporting cell of the vestibular epithelium. + GOC:tfm + PMID:20837532 + + + + + + + + + An external limiting cell found in the vestibular epithelium. + tmeehan + 2010-09-14T03:33:50Z + FMA:75808 + cell + external limiting cell of vestibular epithelium + + + + + An external limiting cell found in the vestibular epithelium. + GOC:tfm + + + + + + + + + + + + + + + A mesothelial cell capable of circulating in the blood by first losing its squamous character. This cell can incorporate into the regenerating mesothelium. + tmeehan + 2010-09-15T10:47:11Z + FMA:86712 + cell + periperhal blood mesothelial cell + + + + + A mesothelial cell capable of circulating in the blood by first losing its squamous character. This cell can incorporate into the regenerating mesothelium. + GOC:tfm + PMID:14592528 + + + + + + + + + + + + + + + + + + + + + A cell that is part of the nervous system. + tmeehan + 2010-09-15T01:34:57Z + CALOHA:TS-2040 + FMA:70333 + cell + neural cell + + + + + A cell that is part of the nervous system. + GOC:tfm + ISBN:0618947256 + + + + + + + + + + + + + + + + + + + + + A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. + tmeehan + 2010-09-15T03:01:54Z + CL:1000406 + CALOHA:TS-2096 + FMA:63875 + cell + connective tissue cell + + + + + + true + + + + + A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. + GOC:tfm + ISBN:0618947256 + + + + + + + + + A cell of the embryo. + tmeehan + 2010-09-15T03:39:21Z + CALOHA:TS-0263 + FMA:82840 + FMA:82841 + WBbt:0007028 + cell + embryonic cell + + + + + A cell of the embryo. + FMA:0618947256 + + + + + + + + + + A stem cell of embryonic origin. + tmeehan + 2010-09-15T03:44:35Z + BTO:0001086 + CALOHA:TS-0263 + FMA:82841 + ESC + cell + This is an in vitro cell type and may be removed in future releases. These cells are reportedly SSEA-4-positive, CD73-negative, and CD324-positive. + embryonic stem cell + + + + + A stem cell of embryonic origin. + GOC:dsd + GOC:tfm + ISBN:068340007X + PMID:18179856 + + + + + + + + + + + + + + + + + + + + A cell of a fetus which is suspended in the amniotic fluid. Amniocytes are considered to arise from several tissues including fetal skin, the fetal urinary tract, umbilical cord, and the inner amniotic surface. + tmeehan + 2010-09-20T10:13:37Z + BTO:0000066 + cell + amniocyte + + + + + + true + + + + + A cell of a fetus which is suspended in the amniotic fluid. Amniocytes are considered to arise from several tissues including fetal skin, the fetal urinary tract, umbilical cord, and the inner amniotic surface. + BFO:0000066 + GOC:tfm + PMID:3211847 + + + + + + + + + + A myoepithelial cell that surrounds milk-secreting luminal epithelial cells. This cell type contracts under the stimulation of oxytocin and is attached to the basement membrane by hemidesmosomes and to the adjacent luminal cells by desmosomes. This cell type expresses high level of keratin-14 and is estrogen receptor alpha negative. + tmeehan + 2010-09-20T11:42:14Z + cell + myoepithelial cell of mammary gland + + + + + A myoepithelial cell that surrounds milk-secreting luminal epithelial cells. This cell type contracts under the stimulation of oxytocin and is attached to the basement membrane by hemidesmosomes and to the adjacent luminal cells by desmosomes. This cell type expresses high level of keratin-14 and is estrogen receptor alpha negative. + GOC:tfm + PMID:11250738 + PMID:19022771 + + + + + + + + + + + + + + + + + + + + + The milk-producing cell of the alveolar unit that emerges during pregnancy. + tmeehan + 2010-09-20T01:30:57Z + CL:0002230 + CL:1000476 + FMA:74506 + FMA:79866 + epithelial cell of lactiferous gland + luminal cell of alveolus of lactiferous gland + cell + mammary alveolar cell + + + + + + true + + + + + The milk-producing cell of the alveolar unit that emerges during pregnancy. + GOC:tfm + PMID:19022771 + + + + + + + + + + A mammary epithelial cell that occurs in the lumen of the ductal and alveoli structure in the breast. + tmeehan + 2010-09-20T01:37:53Z + FMA:73280 + cell + luminal epithelial cell of mammary gland + + + + + A mammary epithelial cell that occurs in the lumen of the ductal and alveoli structure in the breast. + GOC:tfm + PMID:19022771 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the mammary gland. + tmeehan + 2010-09-20T01:49:37Z + BTO:0004300 + breast epithelial cell + mammary epithelial cell + cell + mammary gland epithelial cell + + + + + An epithelial cell of the mammary gland. + GOC:tfm + PMID:19022771 + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the bronchus. + tmeehan + 2010-09-20T02:00:00Z + BTO:0002922 + cell + bronchial epithelial cell + + + + + An epithelial cell of the bronchus. + GOC:tfm + + + + + + + + + An epithelial cell type that lacks the columnar shape typical for other respiratory epithelial cells. This cell type is able to differentiate into other respiratory epithelial cells in response to injury. + tmeehan + 2010-09-20T02:10:36Z + cell + basal epithelial cell of tracheobronchial tree + + + + + An epithelial cell type that lacks the columnar shape typical for other respiratory epithelial cells. This cell type is able to differentiate into other respiratory epithelial cells in response to injury. + GOC:tfm + + + + + + + + + An undifferentiated columnar cell of the bronchus epithelium + tmeehan + 2010-09-20T02:17:58Z + cell + undifferentiated cell of bronchus epithelium + + + + + An undifferentiated columnar cell of the bronchus epithelium + GOC:tfm + PMID:18757316 + + + + + + + + + + + + + + + + + + + + A ciliated cell of the bronchus. + tmeehan + 2010-09-20T02:21:12Z + cell + ciliated cell of the bronchus + + + + + A ciliated cell of the bronchus. + GOC:tfm + PMID:18757316 + + + + + + + + + + + + + + + + + + + + + + + + + A fat cell derived from a neural crest cell. + tmeehan + 2010-09-20T02:25:25Z + cell + neural crest derived fat cell + + + + + A fat cell derived from a neural crest cell. + GOC:tfm + PMID:17507398 + + + + + + + + + An undifferentiated fibroblast that can be stimulated to form a fat cell. + tmeehan + 2010-09-20T02:31:53Z + BTO:0001107 + cell + preadipocyte + + + + + An undifferentiated fibroblast that can be stimulated to form a fat cell. + GOC:tfm + PMID:18793119 + + + + + + + + + A preadipocyte that is capable of differentiating into a brown adipocyte. This cell type expresses uncoupling protein-1, PPAR-gamma, PR-domain-containing 16; and PGC-1alpha (peroxisome proliferator-activated receptor-gamma (PPARgamma) coactivator-1alpha). + tmeehan + 2010-09-20T02:38:38Z + cell + brown preadipocyte + + + + + A preadipocyte that is capable of differentiating into a brown adipocyte. This cell type expresses uncoupling protein-1, PPAR-gamma, PR-domain-containing 16; and PGC-1alpha (peroxisome proliferator-activated receptor-gamma (PPARgamma) coactivator-1alpha). + GOC:tfm + PMID:18719589 + + + + + + + + + An endothelial cell that lines the oral cavitiy including the mucosa of the gums, the palate, the lip, and the cheek. + tmeehan + 2010-09-20T02:52:54Z + cell + buccal mucosa cell + + + + + An endothelial cell that lines the oral cavitiy including the mucosa of the gums, the palate, the lip, and the cheek. + GOC:tfm + MESH:A10.615.550.599 + + + + + + + + + + A stem cell located in the bulge of the hair follicle that can give rise to regenerate the new follicle with each hair cycle and to reepithelialize the epidermis during wound repair. + tmeehan + 2010-09-20T03:07:03Z + bulge keratinocyte + cell + keratinocyte stem cell + + + + + A stem cell located in the bulge of the hair follicle that can give rise to regenerate the new follicle with each hair cycle and to reepithelialize the epidermis during wound repair. + PMID:15339667 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive. + tmeehan + 2010-09-21T10:06:53Z + cell + p-NK + Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). + CD56-positive, CD161-positive immature natural killer cell + + + + + + true + + + + + A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive. + GOC:add + GO_REF:0000031 + ISBN:0781735149 + PMID:12457618 + + + + + p-NK + PMID:12457618 + + + + + + + + + + + + + + + + + + + + + A prostate epithelial cell that is CD133-positive, CD44-positive, integrin A2beta3-high. This cell is a stem cell for the prostate epithelium. + tmeehan + 2010-09-20T03:21:06Z + CD133-positive prostate epithelial cell + cell + prostate stem cell + + + + + A prostate epithelial cell that is CD133-positive, CD44-positive, integrin A2beta3-high. This cell is a stem cell for the prostate epithelium. + GOC:tfm + PMID:15226377 + + + + + + + + + The exocrine cell of the prostate, this epithelial cell secretes prostatic acid phosphotase and PSA, and is dependent on androgen hormones for survival. + tmeehan + 2010-09-20T03:34:05Z + cell + luminal cell of prostate epithelium + + + + + The exocrine cell of the prostate, this epithelial cell secretes prostatic acid phosphotase and PSA, and is dependent on androgen hormones for survival. + GOC:tfm + + + + + + + + + An undifferentiated cell of the prostate epithelium that lacks secretory activity. + tmeehan + 2010-09-20T03:34:10Z + cell + basal cell of prostate epithelium + + + + + An undifferentiated cell of the prostate epithelium that lacks secretory activity. + GOC:tfm + PMCID:PMC2673349 + + + + + + + + + A circulating endothelial cell of the phenotype CD146-positive, CD105-positive, CD45-negative. This cell type is indicative of recent vascular damage. + tmeehan + 2010-09-20T03:49:58Z + cell + circulating endothelial cell + + + + + A circulating endothelial cell of the phenotype CD146-positive, CD105-positive, CD45-negative. This cell type is indicative of recent vascular damage. + GOC:tfm + PMID:19652886 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A natural killer cell subset that is found in the decidual of the uterus and is CD56-high, Galectin-1-positive and CD16-negative. This cell type represents the most abundant immune cell type in the decidual during the first trimester of pregnancy. + tmeehan + 2010-09-20T04:00:02Z + dNK cell + decidual NK cell + cell + decidual natural killer cell + + + + + + true + + + + + A natural killer cell subset that is found in the decidual of the uterus and is CD56-high, Galectin-1-positive and CD16-negative. This cell type represents the most abundant immune cell type in the decidual during the first trimester of pregnancy. + PMID:14568979 + PMID:19800965 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive. + tmeehan + 2010-09-20T04:33:11Z + cell + p-NK + Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). + CD56-negative, CD161-positive immature natural killer cell + + + + + + true + + + + + A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive. + GOC:add + GO_REF:0000031 + ISBN:0781735149 + PMID:12457618 + + + + + p-NK + PMID:12457618 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature natural killer cell that is NK1.1-positive, DX5-positive, Ly49-positive, CD27-low and CD11b-low. This cell type is found in high numbers in the liver. + tmeehan + 2010-09-20T04:41:01Z + preNK.BM + cell + Markers are associated with mouse cells. + CD27-low, CD11b-low immature natural killer cell + + + + + + true + + + + + An immature natural killer cell that is NK1.1-positive, DX5-positive, Ly49-positive, CD27-low and CD11b-low. This cell type is found in high numbers in the liver. + GOC:tfm + PMID:19949422 + http:www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + An immature natural killer cell that is NK1.1-positive and DX-5 negative. + tmeehan + 2010-09-21T10:11:44Z + cell + Dx5-negative, NK1.1-positive immature natural killer cell + + + + + + true + + + + + An immature natural killer cell that is NK1.1-positive and DX-5 negative. + GOC:tfm + PMID:12766763 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature natural killer cell that is CD27-high and CD11b-high. This cell type is capable of interferon-gamma secretion. + tmeehan + 2010-09-21T10:19:49Z + cell + CD27-high, CD11b-high natural killer cell + + + + + A mature natural killer cell that is CD27-high and CD11b-high. This cell type is capable of interferon-gamma secretion. + GOC:tfm + PMID:19949422 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD27-low, CD11b-high natural killer cell that has a higher threshold of activation due to higher expression of inhibitory receptors. + tmeehan + 2010-09-21T10:19:54Z + cell + CD27-low, CD11b-high natural killer cell + + + + + A CD27-low, CD11b-high natural killer cell that has a higher threshold of activation due to higher expression of inhibitory receptors. + GOC:tfm + PMID:1994922 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A natural killer cell that is CD27-high and CD11b-low. + tmeehan + 2010-09-21T10:20:00Z + cell + CD27-high, CD11b-low natural killer cell + + + + + A natural killer cell that is CD27-high and CD11b-low. + GOC:tfm + PMID:1994922 + + + + + + + + + + + + + + + + + + + + An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin. + tmeehan + 2010-09-21T04:33:05Z + CL:1000475 + FMA:75621 + endocardial endothelial cell + endothelial cell of endocardium + cell + endocardial cell + + + + + + true + + + + + An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin. + GOC:tfm + ISSN:0452-3458 + + + + + endothelial cell of endocardium + FMA:75621 + + + + + + + + + A multi-fate stem cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 and Isl-1. + tmeehan + 2010-09-21T04:41:06Z + pancreatic endocrine progenitor + pancreatic islet progenitor cell + cell + progenitor cell of endocrine pancreas + + + + + A multi-fate stem cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 and Isl-1. + GOC:tfm + PMID:20025937 + PMID:20217494 + + + + + + + + + + + + + + + + + + + + A hematopoietic stem cell that exists during embryogenesis. + tmeehan + 2010-09-22T09:05:13Z + cell + gestational hematopoietic stem cell + + + + + A hematopoietic stem cell that exists during embryogenesis. + GOC:tfm + ISBN:978-60327-246-6 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic stem cell that resides in the fetal liver. In mice, this cell type is first observed at E10.5. This cell type is MHC-positive, HSA-positive, AA4.1-positive, CD45-positive, Sca-1 positive, CD150-positive, CD48-negative and CD244-negative. + tmeehan + 2010-09-22T09:08:32Z + cell + fetal liver hematopoietic progenitor cell + + + + + + true + + + + + A hematopoietic stem cell that resides in the fetal liver. In mice, this cell type is first observed at E10.5. This cell type is MHC-positive, HSA-positive, AA4.1-positive, CD45-positive, Sca-1 positive, CD150-positive, CD48-negative and CD244-negative. + GOC:tfm + ISBN:978-1-60327-346-6 + PMID:16569764 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive. + tmeehan + 2010-09-22T09:08:34Z + hemangioblast precursor + cell + yolk sac hematopoietic stem cell + + + + + + true + + + + + A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive. + GOC:tfm + doi:10.1097/MOH.0b013e3282f97ae1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A large nucleated basophilic erythrocyte found in mammalian embryos. This cell type arises from the blood islands of yolk sacs and expresses different types of hemoglobins (beta-H1, gamma-1 and zeta) than adult erythrocytes. Considered a type of erythroblast as this cell type can enucleate in circulation. + tmeehan + 2010-09-22T09:27:05Z + primitive erythroblast + primitive erythrocyte + primitive erythroid cell + cell + primitive red blood cell + + + + + + true + + + + + A large nucleated basophilic erythrocyte found in mammalian embryos. This cell type arises from the blood islands of yolk sacs and expresses different types of hemoglobins (beta-H1, gamma-1 and zeta) than adult erythrocytes. Considered a type of erythroblast as this cell type can enucleate in circulation. + DOI:10.1097/MOH.0b013e3282f97ae1 + GOC:tfm + PMID:11495698 + + + + + + + + + + + + + + + + + + + + + + + + A primitive erythrocyte that has undergone enucleation. This cell type is 3-6 fold bigger than the fetal derived erythrocytes that they co-circulate with during fetal development. Expresses epsilon-gamma hemoglobin chains. + tmeehan + 2010-09-22T09:35:16Z + megalocyte + cell + primitive reticulocyte + + + + + + true + + + + + A primitive erythrocyte that has undergone enucleation. This cell type is 3-6 fold bigger than the fetal derived erythrocytes that they co-circulate with during fetal development. Expresses epsilon-gamma hemoglobin chains. + GOC:tfm + PMID:11495698 + doi:10.1097/MOH.0b013e3282f97ae1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A fetal liver derived enucleated erythrocyte. This erythrocyte resembles adult erythrocytes in that they are small (3- to 6- times smaller than primitive erythrocytes) and produce adult hemaglobins. + tmeehan + 2010-09-22T09:38:32Z + macrocyte + cell + fetal derived definitive erythrocyte + + + + + + true + + + + + A fetal liver derived enucleated erythrocyte. This erythrocyte resembles adult erythrocytes in that they are small (3- to 6- times smaller than primitive erythrocytes) and produce adult hemaglobins. + GOC:tfm + PMID:11495698 + + + + + + + + + + + + + + + + + + + + + + + + Derived from the Greek word pyren (the pit of a stone fruit), this is a transient nucleated cell type that results from exclusion of the nucleus from the primitive erythrocyte. + tmeehan + 2010-09-22T10:02:37Z + cell + pyrenocyte + + + + + + true + + + + + Derived from the Greek word pyren (the pit of a stone fruit), this is a transient nucleated cell type that results from exclusion of the nucleus from the primitive erythrocyte. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A hematopoietic stem cell of the placenta. This cell type is first observed E10.5 This cell type may give rise to fetal liver hematopoietic stem cells. + tmeehan + 2010-09-22T10:30:02Z + cell + placental hematopoietic stem cell + + + + + A hematopoietic stem cell of the placenta. This cell type is first observed E10.5 This cell type may give rise to fetal liver hematopoietic stem cells. + GOC:tfm + ISBN:978-1-60327-346-6 + + + + + + + + + A hematopoietic stem cell from the aorta-gonad-mesonephros region of the developing embryo. First seen at E10.5 in mouse embryos. May give rise to fetal liver HSC. + tmeehan + 2010-09-22T10:31:49Z + cell + AGM hematopoietic stem cell + + + + + A hematopoietic stem cell from the aorta-gonad-mesonephros region of the developing embryo. First seen at E10.5 in mouse embryos. May give rise to fetal liver HSC. + GOC:tfm + ISBN:978-1-60327-346-6 + + + + + + + + + + + + + + + + + + + + + + + + + + A progenitor cell that is capable of forming colonies of primitive erythrocytes in the blood island of the yolk sac. First arrive at E7.5 in mouse and expresses CD41. + tmeehan + 2010-09-22T10:47:28Z + EryP-CFC + inner blood island hemangioblast + cell + primitive erythroid progenitor + + + + + + true + + + + + A progenitor cell that is capable of forming colonies of primitive erythrocytes in the blood island of the yolk sac. First arrive at E7.5 in mouse and expresses CD41. + GOC:tfm + ISBN:0813817986 + PMID:20711979 + + + + + + + + + A cell located in the outermost proliferative zone of the external germinal layer that can differentiate into astroglial cells and granule cells. This cell type is glial fibrillary acidic protein-positive and NK1-positive. + tmeehan + 2010-09-22T01:40:44Z + cell + granule cell precursor + + + + + A cell located in the outermost proliferative zone of the external germinal layer that can differentiate into astroglial cells and granule cells. This cell type is glial fibrillary acidic protein-positive and NK1-positive. + GOC:tfm + PMID:14745007 + + + + + + + + + + + + + + + + + + + + + + + + + + A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate. + tmeehan + 2010-09-22T01:57:40Z + corneal fibroblast + corneal keratocyte + cell + keratocyte + + + + + + true + + + + + A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate. + GOC:tfm + ISBN:978-0-7020-2958-5 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the cortical portion of the thymus. Epithelial cells in this region are required for positive selection of CD8-positive T cells. + tmeehan + 2010-09-23T03:17:12Z + BTO:0004562 + cTEC + cell + cortical thymic epithelial cell + + + + + An epithelial cell of the cortical portion of the thymus. Epithelial cells in this region are required for positive selection of CD8-positive T cells. + GOC:tfm + PMID:18403190 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the medullary thymus. This cell type expresses a diverse range of tissue-specific antigens. This promiscuous gene expression is a cell-autonomous property of medullary epithelial cells and is maintained during the entire period of thymic T cell output. + tmeehan + 2010-09-23T03:17:14Z + BTO:0004563 + mTEC + cell + medullary thymic epithelial cell + + + + + An epithelial cell of the medullary thymus. This cell type expresses a diverse range of tissue-specific antigens. This promiscuous gene expression is a cell-autonomous property of medullary epithelial cells and is maintained during the entire period of thymic T cell output. + GOC:tfm + PMID:18180458 + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the myometrium that enlarges and stretches during pregnancy, and contracts in response to oxytocin. + tmeehan + 2010-09-23T03:46:34Z + BTO:0004519 + myometrium smooth muscle cell + cell + myometrial cell + + + + + A smooth muscle cell of the myometrium that enlarges and stretches during pregnancy, and contracts in response to oxytocin. + GOC:tfm + PMID:11429640 + + + + + + + + + + + + + + + + + + + + A cell that lines the trabecular meshwork, which is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure. + tmeehan + 2010-09-23T04:18:50Z + trabeculocyte + cell + trabecular meshwork cell + + + + + + true + + + + + A cell that lines the trabecular meshwork, which is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure. + GOC:tfm + PMID:14500801 + + + + + + + + + + + + + + + + + + + + An endo-epithelial cell of the respiratory tract. + tmeehan + 2010-09-23T04:38:49Z + BTO:0004533 + airway epithelial cell + cell + respiratory epithelial cell + + + + + + true + + + + + An endo-epithelial cell of the respiratory tract. + GOC:tfm + + + + + + + + + A differentiated form of a fungus produced during or as a result of an asexual or sexual reproductive process; usually a cell with a thick cell wall that stores and protects one or more nuclei. Spores may be produced in response to, and are characteristically resistant to, adverse environmental conditions. + tmeehan + 2010-10-01T09:02:42Z + cell + fungal spore + + + + + A differentiated form of a fungus produced during or as a result of an asexual or sexual reproductive process; usually a cell with a thick cell wall that stores and protects one or more nuclei. Spores may be produced in response to, and are characteristically resistant to, adverse environmental conditions. + FAO:0000019 + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A simple columnar epithelial cell that secretes mucin. Rough endoplasmic reticulum, mitochondria, the nucleus, and other organelles are concentrated in the basal portion. The apical plasma membrane projects microvilli to increase surface area for secretion. + tmeehan + 2010-09-23T04:42:27Z + respiratory mucosa goblet cells + cell + respiratory goblet cell + + + + + A simple columnar epithelial cell that secretes mucin. Rough endoplasmic reticulum, mitochondria, the nucleus, and other organelles are concentrated in the basal portion. The apical plasma membrane projects microvilli to increase surface area for secretion. + GOC:tfm + ISBN:0721662544 + + + + + respiratory mucosa goblet cells + MP:0010863 + + + + + + + + + A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). + tmeehan + 2010-09-24T09:44:42Z + BTO:0001268 + FMA:72300 + WBbt:0008378 + cell + + somatic cell + + + + + A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + + + + + + + + + + + + + A transversely striated, synctial muscle cell, formed by the fusion of myoblasts. + tmeehan + 2010-09-24T01:13:01Z + CL:0000369 + myotubule + single cell sarcomere + cell + myotube + + + + + A transversely striated, synctial muscle cell, formed by the fusion of myoblasts. + GOC:dos + GOC:tfm + ISBN:0323052908 + PMID:22274696 + + + + + + + + + A peptide hormone secreting cell that secretes growth hormone releasing hormone. + tmeehan + 2010-09-24T01:36:44Z + GHRH secreting cell + somatocrinin secreting cell + cell + growth hormone releasing hormone secreting cell + + + + + A peptide hormone secreting cell that secretes growth hormone releasing hormone. + GOC:dph + GOC:tfm + + + + + + + + + A hair cell of the ear that contains the organs of balance and hearing. + tmeehan + 2010-09-24T01:49:31Z + ear receptor cell + cell + ear hair cell + + + + + A hair cell of the ear that contains the organs of balance and hearing. + GOC:dph + GOC:tfm + ISBN:0192801023 + + + + + + + + + + + + + + + A giioblast cell that develops from a migratory neural crest cell. The SCP is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has no basal lamina. In rodents SCPs are the only cells in the Schwann cell linage that expresses Cdh19. + tmeehan + 2010-09-24T02:06:10Z + Schwann cell precursor cell + cell + Schwann cell precursor + + + + + A giioblast cell that develops from a migratory neural crest cell. The SCP is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has no basal lamina. In rodents SCPs are the only cells in the Schwann cell linage that expresses Cdh19. + GOC:tfm + + + + + + + + + + + + + + + A glial cell that ensheaths multiple small diameter axons in the peripheral nervous system. The non-myelinating Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. These cells can de-differentiate into immature Schwann cells. + tmeehan + 2010-09-24T02:10:26Z + Schwann cell + cell + non-myelinating Schwann cell + + + + + A glial cell that ensheaths multiple small diameter axons in the peripheral nervous system. The non-myelinating Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. These cells can de-differentiate into immature Schwann cells. + GOC:cvs + GOC:tfm + ISBN:0721662544 + + + + + + + + + + + + + + + A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons. + tmeehan + 2010-09-24T02:10:31Z + Schwann cell + ZFA:0001725 + cell + immature Schwann cell + + + + + A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons. + GOC:cvs + GOC:tfm + ISBN:0721662544 + + + + + + + + + A double negative thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive and is found in the fetal thymus. + tmeehan + 2010-10-07T02:21:07Z + fetal Vgamma2+ thymocyte + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + immature Vgamma2-positive fetal thymocyte + + + + + A double negative thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive and is found in the fetal thymus. + GOC:tfm + http://www.immgen.org + + + + + + + + + A neurecto-epithelial cell found in the arachnoid villi of dura mater. This cell type facilitates flow of cerebrospinal fluid into the blood. + tmeehan + 2010-09-28T02:23:46Z + FMA:86588 + arachnoid cap cell + cell + meningothelial cell + + + + + A neurecto-epithelial cell found in the arachnoid villi of dura mater. This cell type facilitates flow of cerebrospinal fluid into the blood. + GOC:tfm + http://www.aippg.net/forum/viewtopic.php?t=62590 + + + + + + + + + An asexual spore formed by Oomycetes; formed upon fertilization of an oosphere. + tmeehan + 2010-10-01T09:22:45Z + FAO:0000039 + cell + oospore + + + + + An asexual spore formed by Oomycetes; formed upon fertilization of an oosphere. + GOC:tfm + ISBN:0851988857 + SGD:clt + + + + + + + + + A conidium that has only one nucleus. + tmeehan + 2010-10-01T09:26:39Z + FAO:0000025 + cell + uninucleate conidium + + + + + A conidium that has only one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + A conidium that has more than one nucleus. + tmeehan + 2010-10-01T09:31:28Z + FAO:0000033 + cell + multinucleate conidium + + + + + A conidium that has more than one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + A uninucleate spore formed on specialized cells or projections, sterigma, of a conidiophore head. + FAO:0000033 + cell + conidium of conidiophore head + + + + + A uninucleate spore formed on specialized cells or projections, sterigma, of a conidiophore head. + GOC:tfm + PMID:9529886 + SGD:clt + + + + + + + + + + A macroconidium that has only one nucleus. + FAO:0000029 + cell + uninucleate macroconidium + + + + + A macroconidium that has only one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + An oblong or round asexual spore formed from conidial chains. + BTO:0000127 + FAO:0000042 + cell + blastospore + blastoconidium + + + + + An oblong or round asexual spore formed from conidial chains. + GOC:tfm + PMID:2524423 + SGD:clt + + + + + + + + + + A macroconidium that has more than one nucleus. + FAO:0000035 + cell + multinucleate macroconidium + + + + + A macroconidium that has more than one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + Cylindrical spore formed by development and compartmentation of hyphae; the hyphae are often supporting blastoconidiophores. + FAO:0000041 + cell + arthrospore + arthroconidium + + + + + Cylindrical spore formed by development and compartmentation of hyphae; the hyphae are often supporting blastoconidiophores. + GOC:tfm + PMID:2524423 + SGD:clt + + + + + + + + + + An arthroconidium that has more than one nucleus. + FAO:0000037 + cell + multinucleate arthroconidium + + + + + An arthroconidium that has more than one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + + An arthroconidium that has only one nucleus. + FAO:0000031 + cell + uninucleate arthroconidium + + + + + An arthroconidium that has only one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + + A blastoconidium that has only one nucleus. + FAO:0000030 + cell + uninucleate blastconidium + + + + + A blastoconidium that has only one nucleus. + GOC:tfm + SGD:clt + + + + + + + + + + A blastoconidium that has more than one nucleus. + FAO:0000036 + cell + multinucleate blastoconidium + + + + + A blastoconidium that has more than one nucleus. + GOC:tfm + SGD:clt + + + + + + + + Obsolete. Use PO:0025017 from Plant Ontology instead. A plant cell that arises through meiosis and develops into a gametophyte. + cell + replaced_by: PO:0025017 + obsolete plant spore + true + + + + + Obsolete. Use PO:0025017 from Plant Ontology instead. A plant cell that arises through meiosis and develops into a gametophyte. + GOC:tfm + PO:0025017 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A monocyte that has characteristics of both patrolling and inflammatory monocytes. + tmeehan + 2010-10-04T10:52:03Z + cell + intermediate monocyte + + + + + A monocyte that has characteristics of both patrolling and inflammatory monocytes. + GOC:tfm + PMID:20628149 + PMID:20870168 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A myeloid dendritic cell found in the blood, lymph nodes, tonsil, bone marrow, and spleen that is CD141-positive (BDCA-3), XCR1-positive, and Clec9A-positive. This cell-type can cross-present antigen to CD8-positive T cells and can produce inteferon-beta. + tmeehan + 2010-10-04T02:38:58Z + cell + Markers are found in human cells. Normally they represent 3-5% of peripheral blood mDCs (human). These cells express high levels of CD283 (TLR3), are capable of producing IL-12p70 and IFN-beta upon stimulation, and inducing a TH1 response [PMCID:PMC2882828]. They are also Necl2-positive. May be human equivalent of murine CD8alpha-positive DCs. + CD141-positive myeloid dendritic cell + + + + + + true + + + + + A myeloid dendritic cell found in the blood, lymph nodes, tonsil, bone marrow, and spleen that is CD141-positive (BDCA-3), XCR1-positive, and Clec9A-positive. This cell-type can cross-present antigen to CD8-positive T cells and can produce inteferon-beta. + GOC:dsd + GOC:tfm + PMCID:PMC2882828 + PMCID:PMC2882837 + PMID:17332250 + PMID:20628149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A resident monocyte that is Gr-1 high, CD43-negative, CX3CR1-negative, CD115-positive, and B220-negative. + tmeehan + 2010-10-04T11:26:18Z + cell + Markers are associated with mice. The Gr epitope is used to describe this cell type is found on both Ly6c and Ly6g. However, its the Ly6c that is considered the specific marker, and thus used in the cross-product. + Gr1-high classical monocyte + + + + + + true + + + + + A resident monocyte that is Gr-1 high, CD43-negative, CX3CR1-negative, CD115-positive, and B220-negative. + GOC:tfm + PMID:20628149 + PMID:8890901 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A patrolling monocyte that is CD14-low and CD16-positive. + tmeehan + 2010-10-04T12:25:42Z + non-classical monocyte, human + cell + Markers are associated with human monocytes. + CD14-low, CD16-positive monocyte + + + + + + true + + + + + A patrolling monocyte that is CD14-low and CD16-positive. + GOC:tfm + PMID:20870168 + + + + + + + + + + + + + + + + + + + + + + + + A CD14-positive monocyte that is also CD16-positive and CCR2-negative. + tmeehan + 2010-10-04T12:49:47Z + CD16+ monocyte + cell + This cell type is compatible with the HIPC Lyoplate markers for 'CD16+ monocyte'. Markers are associated with human cells. Note that this cell type encompasses both human intermediate monocytes (CD14+, CD16-low), and human non-classical monocytes (CD14-low, CD16+). + CD14-positive, CD16-positive monocyte + + + + + A CD14-positive monocyte that is also CD16-positive and CCR2-negative. + GOC:tfm + PMID:20628149 + PMID:21937707 + PMID:22343568 + + + + + CD16+ monocyte + PMID:22343568 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An intermediate monocyte that is Gr1-positive, CD43-positive. + tmeehan + 2010-10-04T12:49:49Z + cell + Gr1-positive, CD43-positive monocyte + + + + + An intermediate monocyte that is Gr1-positive, CD43-positive. + GOC:tfm + PMID:20628149 + + + + + + + + + + + + + + + + + + + + + + + + A myeloid dendritic cell found in the blood that is CD1c-positive. + tmeehan + 2010-10-04T02:39:01Z + cell + Normally represent 10-20% of peripheral blood mDCs (human). They are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD285-positive (TLR5), CD286-positive (TLR6), CD288-positive (TLR8), and CD290-positive (TLR10) [PMID:20204387]. Upon TLR stimulation, these cells were potent producers of CXCL8 (IL-8), while producing little TNF-alpha. + CD1c-positive myeloid dendritic cell + + + + + + true + + + + + A myeloid dendritic cell found in the blood that is CD1c-positive. + GOC:dsd + GOC:tfm + PMID:20204387 + PMID:20628149 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A precursor B cell that is AA4-positive, IgM-negative, CD19-positive, CD43-positive and HSA-positive. + tmeehan + 2010-10-05T10:11:38Z + cell + Fraction B/C precursor B cell + + + + + + true + + + + + A precursor B cell that is AA4-positive, IgM-negative, CD19-positive, CD43-positive and HSA-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain that has as part a Vgamma3 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus with highest numbers occurring at E17-E18. + tmeehan + 2010-10-07T02:05:46Z + mature DEC precursor + mature DETC precursor + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + mature dendritic epithelial T cell precursor + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain that has as part a Vgamma3 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus with highest numbers occurring at E17-E18. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A resting mature B cell within the Peyer's patch that is CD19-positive, B220-positive, IgM-positive, AA4-negative, CD23-positive, CD43-negative, and CD5-negative. + tmeehan + 2010-10-05T11:18:03Z + Peyers patch B cell + cell + Peyer's patch B cell + + + + + + true + + + + + A resting mature B cell within the Peyer's patch that is CD19-positive, B220-positive, IgM-positive, AA4-negative, CD23-positive, CD43-negative, and CD5-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus. + tmeehan + 2010-10-07T02:24:36Z + fetal Vgamma2-positive + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + mature Vgamma2-positive fetal thymocyte + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A thymocyte found in the fetal thymus. + tmeehan + 2010-10-07T02:28:25Z + cell + fetal thymocyte + + + + + A thymocyte found in the fetal thymus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + A post-natal thymocyte expressing components of the gamma-delta T cell receptor. This cell type is always double-negative (i.e. CD4-negative, CD8-negative). + tmeehan + 2010-10-07T02:33:39Z + gammadelta thymocyte + gd thymocyte + cell + gamma-delta thymocyte + + + + + + true + + + + + A post-natal thymocyte expressing components of the gamma-delta T cell receptor. This cell type is always double-negative (i.e. CD4-negative, CD8-negative). + GOC:tfm + PMID:20725107 + + + + + + + + + A double negative post-natal thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. + tmeehan + 2010-10-07T02:53:44Z + Vgamma2-positive thymocyte + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + immature Vgamma2-positive thymocyte + + + + + A double negative post-natal thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. + GOC:tfm + http://www.immgen.org + + + + + + + + + + + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus. + tmeehan + 2010-10-07T02:53:48Z + Vgamma2-positive + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + mature Vgamma2-positive thymocyte + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A double negative post-natal thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. + tmeehan + 2010-10-07T02:59:05Z + Vgamma2-negative thymocyte + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + immature Vgamma2-negative thymocyte + + + + + A double negative post-natal thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. + GOC:tfm + http://www.immgen.org + + + + + + + + + + + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus. + tmeehan + 2010-10-07T02:59:08Z + Vgamma2-negative + cell + NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. + mature Vgamma2-negative thymocyte + + + + + A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + A cell that is found in the periacinar space of the exocrine pancreas and in perivascular and periductal regions of the pancreas, and has long cytoplasmic processes that encircle the base of the acinus. Expresses several intermediate filament proteins including vimentin and nestin. Shares many of the characteristics of hepatatic stellate cells, but not stellate cells of the central nervous system. Upon activation, this cell type undergoes morphological and gene expression changes that make the cell suggestive of being a type of myofibroblast. + tmeehan + 2010-11-10T09:40:33Z + PaSC + pancreas stellate cell + cell + pancreatic stellate cell + + + + + A cell that is found in the periacinar space of the exocrine pancreas and in perivascular and periductal regions of the pancreas, and has long cytoplasmic processes that encircle the base of the acinus. Expresses several intermediate filament proteins including vimentin and nestin. Shares many of the characteristics of hepatatic stellate cells, but not stellate cells of the central nervous system. Upon activation, this cell type undergoes morphological and gene expression changes that make the cell suggestive of being a type of myofibroblast. + GOC:mah + GOC:tfm + PMID:17200706 + + + + + + + + + A gamma-delta receptor that expresses Vgamma1.1 but does not express Vdelta6.3 chains in the T-cell receptor. + tmeehan + 2010-10-07T03:07:44Z + Vg1.1-positive, Vd6.3-negative T cell + cell + Vgamma1.1-positive, Vdelta6.3-negative thymocyte + + + + + A gamma-delta receptor that expresses Vgamma1.1 but does not express Vdelta6.3 chains in the T-cell receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A gamma-delta receptor that expresses Vgamma1.1-Vdelta6.3 chains in the T-cell receptor. + tmeehan + 2010-10-07T03:03:00Z + Vg1.1+Vd6.3+ T cell + cell + Vgamma1.1-positive, Vdelta6.3-positive thymocyte + + + + + A gamma-delta receptor that expresses Vgamma1.1-Vdelta6.3 chains in the T-cell receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A Vgamma1.1-positive, Vdelta6.3-negative thymocyte that is CD24-negative. + tmeehan + 2010-10-07T03:10:32Z + cell + mature Vg1.1-positive, Vd6.3-negative T cell + mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte + + + + + A Vgamma1.1-positive, Vdelta6.3-negative thymocyte that is CD24-negative. + GOC:tfm + http://www.immgen.org + + + + + + + + + A Vgamma1.1-positive, Vdelta6.3-negative thymocyte that is CD24-positive. + tmeehan + 2010-10-07T03:10:35Z + cell + immature Vg1.1-positive, Vd6.3-negative T cell + immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte + + + + + A Vgamma1.1-positive, Vdelta6.3-negative thymocyte that is CD24-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A Vgamma1.1-positive, Vdelta6.3-positive thymocyte that is CD24-positive. + tmeehan + 2010-10-07T03:10:39Z + immature Vg1.1+Vd6.3+ T cell + cell + immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte + + + + + A Vgamma1.1-positive, Vdelta6.3-positive thymocyte that is CD24-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A Vgamma1.1-positive, Vdelta6.3-positive thymocyte that is CD24-negative. + tmeehan + 2010-10-07T03:10:41Z + mature Vg1.1+Vd6.3+ T cell + cell + mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte + + + + + A Vgamma1.1-positive, Vdelta6.3-positive thymocyte that is CD24-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + An immature or mature cell of the first erythroid lineage to arise during embryonic development. + tmeehan + 2010-10-12T11:22:41Z + cell + primitive erythroid lineage cell + + + + + An immature or mature cell of the first erythroid lineage to arise during embryonic development. + GOC:tfm + + + + + + + + + + + + + + + A pluripotent cell in the yolk sac that can give rise to mesenchymal cells including erythrocytes and endothelial cells. + tmeehan + 2010-10-12T12:21:16Z + cell + hemangioblast + + + + + A pluripotent cell in the yolk sac that can give rise to mesenchymal cells including erythrocytes and endothelial cells. + GOC:tfm + ISBN:0813817986 + PMID:11495698 + + + + + + + + + + + + + + + + + + + + + + + + A T cell that expresses a T cell receptor complex and has completed T cell selection. + tmeehan + 2010-10-12T01:56:15Z + CD3e-positive T cell + mature T-cell + cell + CD3epsilon T cell + mature T cell + + + + + + true + + + + + A T cell that expresses a T cell receptor complex and has completed T cell selection. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A T cell that has not completed T cell selection. + tmeehan + 2010-10-12T01:56:17Z + BTO:0001372 + CALOHA:TS-1042 + immature T-cell + cell + immature T cell + + + + + + true + + + + + A T cell that has not completed T cell selection. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles. + tmeehan + 2010-10-15T09:24:05Z + cell + nucleated reticulocyte + + + + + + true + + + + + A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles. + GOC:tfm + PMID:18182572 + PMID:9011180 + PMID:9046052 + + + + + + + + + + + + + + + + + + + + + + + + A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes. + tmeehan + 2010-10-15T09:24:08Z + CALOHA:TS-0864 + FMA:66785 + cell + enucleated reticulocyte + + + + + + true + + + + + A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes. + GOC:tfm + ISBN:0-12203-052-4 + ISBN:0721601464 + + + + + + + + + + + + + + + + + + + + A DN2 thymocyte that is Kit-hi. + tmeehan + 2010-10-21T10:12:05Z + cell + Observed in mice. + DN2a thymocyte + + + + + + true + + + + + A DN2 thymocyte that is Kit-hi. + GOC:tfm + PMID:20595614 + + + + + + + + + + + + + + + + + + + + + + + + + + A DN2 thymocyte that is Kit-low. + tmeehan + 2010-10-21T10:12:08Z + cell + Observed in mice. + DN2b thymocyte + + + + + + true + + + + + A DN2 thymocyte that is Kit-low. + GOC:tfm + PMID:20595614 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A pro-T cell that is lin-negative, CD25-negative, CD127-negative, CD44-positive and kit-positive. + tmeehan + 2010-10-21T01:16:24Z + ETP + preT.ETP.Th + cell + ETPs are reportedly CD1a-negative, CD4-negative, CD7-positive, CD8a-negative, CD8b-negative, CD33-low, CD34-high, CD38-low, CD45RA-positive, and CD45RO-negative. + early T lineage precursor + + + + + + true + + + + + A pro-T cell that is lin-negative, CD25-negative, CD127-negative, CD44-positive and kit-positive. + GOC:dsd + GOC:tfm + PMID:16551251 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A mature natural killer cell that is CD11b-positive and CD27-positive. + tmeehan + 2010-10-25T03:07:59Z + cell + A natural killer cell that is NK1.1-positive, CD11b-positive, and CD27-positive. + CD11b-positive, CD27-positive natural killer cell + + + + + + true + + + + + A mature natural killer cell that is CD11b-positive and CD27-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A double-positive, alpha-beta thymocyte that is small and not proliferating. + tmeehan + 2010-10-21T01:59:06Z + T.DP.sm.Th + cell + resting double-positive thymocyte + + + + + + true + + + + + A double-positive, alpha-beta thymocyte that is small and not proliferating. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating. + tmeehan + 2010-10-21T01:59:11Z + T.DPb.Th + activated double-positive thymocyte + cell + double-positive blast + + + + + + true + + + + + A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A double-positive thymocyte that is CD69-positive and has begun positive selection. + tmeehan + 2010-10-21T02:11:52Z + T.DP69+.Th + cell + CD69-positive double-positive thymocyte + + + + + + true + + + + + A double-positive thymocyte that is CD69-positive and has begun positive selection. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor. + tmeehan + 2010-10-21T02:29:19Z + T.4int8+.Th + cell + CD4-intermediate, CD8-positive double-positive thymocyte + + + + + + true + + + + + A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor. + tmeehan + 2010-10-21T02:29:23Z + T.4int8+.th + cell + CD4-positive, CD8-intermediate double-positive thymocyte + + + + + + true + + + + + A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, CD8-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor. + tmeehan + 2010-10-21T02:43:52Z + CD24-positive, CD4 single-positive semimature thymocyte + T.4SP24int.Th + cell + Described in the immgene database as being CD24-intermediate. + CD24-positive, CD4 single-positive thymocyte + + + + + + true + + + + + A CD4-positive, CD8-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive. + tmeehan + 2010-10-21T02:46:02Z + T.4SP69+.Th + intermediate CD4-single-positive + cell + CD69-positive, CD4-positive single-positive thymocyte + + + + + + true + + + + + A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD8-positive, CD4-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor. + tmeehan + 2010-10-21T02:59:10Z + CD24-positive, CD8 single-positive semimature thymocyte + T.8SP24int.Th + cell + Described in the immgene database as being CD24-intermediate. + CD24-positive, CD8 single-positive thymocyte + + + + + + true + + + + + A CD8-positive, CD4-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive. + tmeehan + 2010-10-21T02:59:14Z + T.8SP69+.Th + intermediate CD8-single-positive + cell + CD69-positive, CD8-positive single-positive thymocyte + + + + + + true + + + + + A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor. + tmeehan + 2010-10-21T03:31:19Z + cell + T.4SP24-.Th + mature CD4 single-positive thymocyte + + + + + + true + + + + + A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature CD8-positive, CD4-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor. + tmeehan + 2010-10-21T03:51:50Z + T.8SP24-.Th + cell + mature CD8 single-positive thymocyte + + + + + + true + + + + + A mature CD8-positive, CD4-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor. + GOC:tfm + http:www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A mature NK cell that is NK1.1-positive. + tmeehan + 2010-10-25T03:18:04Z + NK.sp + NK1.1-positive NK cell + cell + Note: Nk1.1 expression is restricted to C57BL strains of laboratory mice. + NK1.1-positive natural killer cell + + + + + + true + + + + + A mature NK cell that is NK1.1-positive. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is NKGA2-positive. + tmeehan + 2010-10-25T03:31:09Z + NK.G2A+.SP + cell + NKGA2-positive natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is NKGA2-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is Ly49D-positive. + tmeehan + 2010-10-25T03:36:19Z + NK.49D+.Sp + cell + Ly49D-positive natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is Ly49D-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is CD94-positive. + tmeehan + 2010-10-25T03:36:28Z + NK.94+.Sp + cell + CD94-positive natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is CD94-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is CD94-negative and Ly49Cl-negative. + tmeehan + 2010-10-25T03:56:21Z + CD94- Ly49I-negative NK cell + NK.49Cl-94-.Sp + cell + CD94-negative, Ly49CI-negative natural killer cell + + + + + A NK1.1-positive T cell that is CD94-negative and Ly49Cl-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is Ly49Cl-positive. + tmeehan + 2010-10-25T03:36:38Z + Ly49I-positive NK cell + NK.49Cl+.Sp + cell + Ly49CI-positive natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is Ly49Cl-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is Ly49H-positive. + tmeehan + 2010-10-25T03:36:43Z + LyH49H-positive + cell + Ly49H-positive natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is Ly49H-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is Ly49D-negative. + tmeehan + 2010-10-25T03:39:02Z + NK.49D-.Sp + cell + Ly49D-negative natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is Ly49D-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is Ly49Cl-negative. + tmeehan + 2010-10-25T03:52:04Z + Ly49I-negative NK cell + NK.49Cl-.Sp + cell + Ly49CI-negative natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is Ly49Cl-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is CD94-negative. + tmeehan + 2010-10-25T03:54:18Z + NK.94-.Sp + cell + CD94-negative natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is CD94-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is Ly49H-negative. + tmeehan + 2010-10-25T03:42:42Z + LyH49H-negative + cell + Ly49H-negative natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is Ly49H-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A NK1.1-positive T cell that is CD94-positive and Ly49Cl-positive. + tmeehan + 2010-10-25T03:56:27Z + NK.49Cl+94+.Sp + cell + CD94-positive Ly49CI-positive natural killer cell + + + + + + true + + + + + A NK1.1-positive T cell that is CD94-positive and Ly49Cl-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place. + tmeehan + 2010-11-10T01:41:00Z + cell + tether cell + + + + + A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place. + GOC:cvs + GOC:tfm + PMID:9398434 + + + + + + + + + A multi-fate stem cell that is the source of cells for growth of the mammary gland during puberty and gestation. This cell type gives rise to both the luminal and myoepithelial cell types of the gland, and have been shown to have the ability to regenerate the entire organ in mice. This cell type also plays an important role in carcinogenesis of the breast. This cell type is Lin-, CD24-positive, CD29-hi. + tmeehan + 2010-11-10T01:46:51Z + cell + mammary stem cell + + + + + A multi-fate stem cell that is the source of cells for growth of the mammary gland during puberty and gestation. This cell type gives rise to both the luminal and myoepithelial cell types of the gland, and have been shown to have the ability to regenerate the entire organ in mice. This cell type also plays an important role in carcinogenesis of the breast. This cell type is Lin-, CD24-positive, CD29-hi. + GOC:hjd + GOC:tfm + PMID:15987436 + PMID:16397499 + PMID:17851544 + + + + + + + + + + + + + + + + + + + + + + + + + + The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons. + tmeehan + 2010-11-10T02:51:34Z + cell + oligodendrocyte precursor cell + + + + + + true + + + + + The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons. + GOC:tfm + PMID:20142420 + + + + + + + + + + + + + + + + + + + + + + + + Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8_alpha-negative and is CD205-positive. + tmeehan + 2010-11-22T01:10:28Z + DC.8-4-11b+ + spleen double-negative dendritic cell + cell + Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell + + + + + + true + + + + + Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8_alpha-negative and is CD205-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A CD11c-low plasmacytoid dendritic cell that is CD8alpha-negative and CD4-positive. + tmeehan + 2010-11-22T01:27:37Z + DC.pDC.8- + cell + CD8_alpha-negative plasmactyoid dendritic cell + + + + + + true + + + + + A CD11c-low plasmacytoid dendritic cell that is CD8alpha-negative and CD4-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A CD11c-low plasmacytoid dendritic cell that is CD8alpha-positive and CD4-positive. + tmeehan + 2010-11-22T01:23:07Z + DC.pDC.8+ + cell + CD8_alpha-positive plasmactyoid dendritic cell + + + + + + true + + + + + A CD11c-low plasmacytoid dendritic cell that is CD8alpha-positive and CD4-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A Langerhans cell that is in the epidermis and is CD45-positive, MHCII-positive, and CD11b-positive. + tmeehan + 2010-11-22T03:57:57Z + cell + epidermal Langerhans cell + + + + + + true + + + + + A Langerhans cell that is in the epidermis and is CD45-positive, MHCII-positive, and CD11b-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A dermal dendritic cell that is langerin-positive, CD103-positive, and CD11b-negative. + tmeehan + 2010-11-22T04:06:22Z + cell + langerin-positive dermal dendritic cell + + + + + + true + + + + + A dermal dendritic cell that is langerin-positive, CD103-positive, and CD11b-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A dermal dendritic cell that is langerin-negative, CD103-negative, and CD11b-positive. + tmeehan + 2010-11-22T04:09:44Z + cell + langerin-negative dermal dendritic cell + + + + + + true + + + + + A dermal dendritic cell that is langerin-negative, CD103-negative, and CD11b-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A conventional thymic dendritic cell that is CD8alpha-negative. + tmeehan + 2010-11-23T10:58:53Z + DC.8-.Th + cell + CD8alpha-negative thymic conventional dendritic cell + + + + + + true + + + + + A conventional thymic dendritic cell that is CD8alpha-negative. + GOC:tfm + PMID:19273629 + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + A conventional dendritic cell that is CD103-positive. This cell type is usually found in non-lymphoid tissue. + tmeehan + 2010-11-23T01:32:43Z + cell + CD103-positive dendritic cell + + + + + + true + + + + + A conventional dendritic cell that is CD103-positive. This cell type is usually found in non-lymphoid tissue. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A F4/80-negative dendritic cell located in adipose tissue. + tmeehan + 2010-11-23T01:38:21Z + cell + adipose dendritic cell + + + + + + true + + + + + A F4/80-negative dendritic cell located in adipose tissue. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + An adipose dendritic cell that is SIRPa-positive. + tmeehan + 2010-11-23T01:40:44Z + DC.SIRPa+.Ad + cell + SIRPa-positive adipose dendritic cell + + + + + An adipose dendritic cell that is SIRPa-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + An adipose dendritic cell that is SIRPa-negative. + tmeehan + 2010-11-23T01:40:46Z + DC.SIRPa-.Ad + cell + SIRPa-negative adipose dendritic cell + + + + + An adipose dendritic cell that is SIRPa-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A conventional dendritic cell that expresses CD11b (ITGAM). + tmeehan + 2010-11-23T01:50:05Z + cell + CD11b-positive dendritic cell + + + + + + true + + + + + A conventional dendritic cell that expresses CD11b (ITGAM). + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD11b-positive dendritic cell located in the serosal portion of the small intestine epithelium. This cell type is CD45-positive, MHC-II-positive, CD11c-low, CD103-negative. + tmeehan + 2010-11-23T02:00:21Z + DC.11cloSer.SI + cell + small intestine serosal dendritic cell + + + + + + true + + + + + A CD11b-positive dendritic cell located in the serosal portion of the small intestine epithelium. This cell type is CD45-positive, MHC-II-positive, CD11c-low, CD103-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A myeloid suppressor cell that is Gr1-high and CD11c-negative. + tmeehan + 2010-11-23T02:15:12Z + MDS.Gr1hi + cell + Gr1-high myeloid suppressor cell + + + + + + true + + + + + A myeloid suppressor cell that is Gr1-high and CD11c-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A myeloid suppressor cell that is Gr1-low and CD11c-positive. + tmeehan + 2010-11-23T02:19:43Z + MDS.Gr1lo + cell + Gr1-low myeloid suppressor cell + + + + + + true + + + + + A myeloid suppressor cell that is Gr1-low and CD11c-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + Gr1-high monocyte that lacks MHC-II receptor complex. + tmeehan + 2010-11-23T03:27:12Z + Mo.6C+II- + cell + MHC-II-negative classical monocyte + + + + + + true + + + + + Gr1-high monocyte that lacks MHC-II receptor complex. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + Gr1-high monocyte that has a MHC-II receptor complex. + tmeehan + 2010-11-23T03:30:21Z + Mo.6c+II + cell + MHC-II-positive classical monocyte + + + + + + true + + + + + Gr1-high monocyte that has a MHC-II receptor complex. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + Gr1-low non-classical monocyte that lacks expression of a MHC-II complex. + tmeehan + 2010-11-23T03:38:15Z + Mo.6C-II- + cell + MHC-II-negative non-classical monocyte + + + + + + true + + + + + Gr1-low non-classical monocyte that lacks expression of a MHC-II complex. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + Gr1-low non-classical monocyte that has low to intermediate expression of the MHC-II complex. + tmeehan + 2010-11-23T03:47:53Z + Mo.6C-IIint + cell + MHC-II-low non-classical monocyte + + + + + + true + + + + + Gr1-low non-classical monocyte that has low to intermediate expression of the MHC-II complex. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + Gr1-low non-classical monocyte that has high surface expression of a MHC-II complex. + tmeehan + 2010-11-23T03:47:55Z + Mo.6C-II+ + cell + MHC-II-high non-classical monocyte + + + + + + true + + + + + Gr1-low non-classical monocyte that has high surface expression of a MHC-II complex. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + A MHC-II-negative classical monocyte located in lymphoid tissue that is F4/80-positive, CD11c-negative, and CD11b-high. + tmeehan + 2010-11-23T04:00:52Z + cell + lymphoid MHC-II-negative classical monocyte + + + + + + true + + + + + A MHC-II-negative classical monocyte located in lymphoid tissue that is F4/80-positive, CD11c-negative, and CD11b-high. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + A MHC-II-negative classical monocyte located in lymphoid tissue that is F4/80-positive, CD11c-intermediate, and CD11b-high. + tmeehan + 2010-11-23T04:09:09Z + cell + lymphoid MHC-II-negative non-classical monocyte + + + + + A MHC-II-negative classical monocyte located in lymphoid tissue that is F4/80-positive, CD11c-intermediate, and CD11b-high. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive. + tmeehan + 2010-11-23T04:19:25Z + BTO:0004732 + cell + MF.BM + bone marrow macrophage + + + + + + true + + + + + A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + A macrophage located in adipose tissue that is CD45-positive, CD11c-positive, and SIRPa-positive. + tmeehan + 2010-11-23T04:31:28Z + cell + adipose macrophage + + + + + + true + + + + + A macrophage located in adipose tissue that is CD45-positive, CD11c-positive, and SIRPa-positive. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + An adipose macrophage that does not express F4/80but is MHC-II-positive. This cell type exhibits autofluorescence under typical flow cyometry conditions. + tmeehan + 2010-11-23T04:40:50Z + MF.Autofl.Ad + cell + F4/80-negative adipose macrophage + + + + + + true + + + + + An adipose macrophage that does not express F4/80but is MHC-II-positive. This cell type exhibits autofluorescence under typical flow cyometry conditions. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + An adipose macrophage that does not express MHC-II but is F4/80-positive. + tmeehan + 2010-11-23T04:35:53Z + MF.F480+.Ad + cell + F4/80-positive adipose macrophage + + + + + + true + + + + + An adipose macrophage that does not express MHC-II but is F4/80-positive. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell located in the nasal epithelium. + tmeehan + 2010-12-03T03:03:02Z + MP:0002262 + cell + nasal mucosa goblet cell + + + + + A goblet cell located in the nasal epithelium. + GOC:cjm + GOC:tfm + + + + + + + + + + + + + + + + + + + + The flattened smooth myoepithelial cells of mesodermal origin that lie just outside the basal lamina of the seminiferous tubule. + tmeehan + 2010-12-03T03:11:48Z + cell + peritubular myoid cell + + + + + + true + + + + + The flattened smooth myoepithelial cells of mesodermal origin that lie just outside the basal lamina of the seminiferous tubule. + GOC:cjm + GOC:tfm + MP:0006420 + + + + + + + + + + + + + + + + + + + + A melanocyte that produces pigment in the dermis. + tmeehan + 2010-12-03T03:17:05Z + cell + dermal melanocyte + + + + + + true + + + + + A melanocyte that produces pigment in the dermis. + GOC:cjm + GOC:tfm + MP:0009386 + + + + + + + + + + + + + + + + + + + + A melanocyte that produces pigment within the hair follicle. + tmeehan + 2010-12-03T03:17:09Z + cell + hair follicle melanocyte + + + + + + true + + + + + A melanocyte that produces pigment within the hair follicle. + GOC:tfm + MP:0004381 + + + + + + + + + + + + + + + + + + + + A melanocyte that produces pigment in the epithelium. + tmeehan + 2010-12-03T03:17:14Z + cell + The text defintion reference to the MP term appears to reference an epidermal melanocyte term. This term represents any melanocyte in any epithelium. + epithelial melanocyte + + + + + + true + + + + + A melanocyte that produces pigment in the epithelium. + GOC:tfm + MP:0009388 + + + + + + + + + + + + + + + + + + + + A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium. + tmeehan + 2010-12-03T03:25:32Z + cell + retinal melanocyte + + + + + + true + + + + + A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium. + GOC:tfm + MP:0010190 + + + + + + + + + + + + + + + + + + + + + A melanocyte located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV) . + tmeehan + 2010-12-03T03:29:15Z + cell + strial intermediate cell + + + + + + true + + + + + A melanocyte located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV) . + GOC:tfm + MP:0000048 + + + + + + + + + A neuronal receptor that respond to mechanical pressure or distortion in the skin. + tmeehan + 2010-12-06T02:53:30Z + cell + cutaneous/subcutaneous mechanoreceptor cell + + + + + A neuronal receptor that respond to mechanical pressure or distortion in the skin. + GOC:tfm + MP:0000973 + + + + + + + + + + + + + + + + + + + + + + + + A trophoblast cell that has a large volume of cytoplasm, is polyploidy and is usually mononuclear but is also occasionally multi-nucleate. This cell type is important in establishing maternal physiology and remodeling of the vasculature of the placenta. + tmeehan + 2010-12-06T02:55:24Z + giant trophoblast cell + cell + trophoblast giant cell + + + + + + true + + + + + A trophoblast cell that has a large volume of cytoplasm, is polyploidy and is usually mononuclear but is also occasionally multi-nucleate. This cell type is important in establishing maternal physiology and remodeling of the vasculature of the placenta. + GOC:tfm + MP:0001714 + MP:19876834 + + + + + + + + + + + + + + + + + + + + + + + + A thymocyte that lacks expression of CD4 and CD8. + tmeehan + 2010-12-06T03:03:38Z + double negative T cell + cell + double negative thymocyte + + + + + + true + + + + + A thymocyte that lacks expression of CD4 and CD8. + GOC:tfm + MP:0002407 + + + + + + + + + + + + + + + + + + + + A supporting cell of the organ of Corti. + tmeehan + 2010-12-06T03:09:01Z + cell + organ of Corti supporting cell + + + + + A supporting cell of the organ of Corti. + GOC:tfm + MP:0004300 + + + + + + + + + + + + + + + + + + + + A specialized cell involved in auditory sensory perception. + tmeehan + 2010-12-06T03:18:43Z + cell + auditory epithelial cell + + + + + A specialized cell involved in auditory sensory perception. + GOC:tfm + + + + + + + + + A polarized columnar cell that covesr the lateral surface of the cochlear duct, secretes potassium ions and forms a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria. + tmeehan + 2010-12-06T03:20:41Z + cell + strial marginal cell + + + + + A polarized columnar cell that covesr the lateral surface of the cochlear duct, secretes potassium ions and forms a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria. + GOC:tfm + MP:0004366 + + + + + + + + + + + + + + + A polarized cell that is juxtaposed to fibrocytes in the underlying spiral ligament. This cell type secretes potassium ions derived from fibrocytes through gap junctions. + tmeehan + 2010-12-06T03:26:53Z + cell + Basal cells form a multi-layered epithelial barrier that separates the extracellular spaces of the stria vascularis and the spiral ligament[PMID:18353863] + strial basal cell + + + + + A polarized cell that is juxtaposed to fibrocytes in the underlying spiral ligament. This cell type secretes potassium ions derived from fibrocytes through gap junctions. + GOC:tfm + MP:0004365 + + + + + + + + + + + + + + + + + + + + + A cell located in the heart, including both muscle and non muscle cells. + tmeehan + 2010-12-07T09:37:22Z + BTO:0001539 + CALOHA:TS-0115 + FMA:83808 + FMA:84791 + heart cell + cell + From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. + cardiocyte + + + + + + true + + + + + A cell located in the heart, including both muscle and non muscle cells. + GOC:tfm + + + + + + + + + A fetal and neonatal heart cell that undergoes proliferation and is not yet terminally differentiated into a binucleate or a multinucleate cardiac myocyte. + tmeehan + 2010-12-07T09:50:41Z + embryonic cardiomyocyte + neonatal cardiomyocyte + cell + fetal cardiomyocyte + + + + + A fetal and neonatal heart cell that undergoes proliferation and is not yet terminally differentiated into a binucleate or a multinucleate cardiac myocyte. + GOC:tfm + MP:0008788 + + + + + + + + + + + + + + + + + + + + + + + + A T cell that is located in the intestinal epithelium and is capable of a mucosal immune response. + tmeehan + 2010-12-07T09:54:50Z + IEL + intraepithelial T cell + intraepithelial T-cell + cell + intraepithelial lymphocyte + + + + + + true + + + + + A T cell that is located in the intestinal epithelium and is capable of a mucosal immune response. + GOC:tfm + MP:0008894 + + + + + + + + + A trophoblast giant cell derived from the mural trophectoderm. + tmeehan + 2010-12-07T10:07:47Z + EMAPA:16066 + cell + primary trophoblast giant cell + + + + + A trophoblast giant cell derived from the mural trophectoderm. + GOC:tfm + PMCID:PMC85124 + + + + + + + + + A trophoblast giant cell that is derived from ectoplacental cone and, later in gestation, the spongiotrophoblast. + tmeehan + 2010-12-07T10:07:52Z + cell + secondary trophoblast giant cell + + + + + A trophoblast giant cell that is derived from ectoplacental cone and, later in gestation, the spongiotrophoblast. + GOC:tfm + PMCID:PMC85124 + + + + + + + + + A trophoblast cell that arises in the junctional zone (basal plate) of the placenta. + tmeehan + 2010-12-07T12:56:56Z + cell + spongiotrophoblast cell + + + + + A trophoblast cell that arises in the junctional zone (basal plate) of the placenta. + GOC:tfm + MP:0008959 + + + + + + + + + A P/D1 enteroendocrine cell that is Grimelius positive and stores bombesin-like polypeptide. + tmeehan + 2010-12-07T03:42:06Z + cell + P enteroendocrine cell + + + + + A P/D1 enteroendocrine cell that is Grimelius positive and stores bombesin-like polypeptide. + FMA:63418 + GOC:tfm + + + + + + + + + A P/D1 enteroendocrine cell that is argyrophilic and stores vasoactive intestinal polypeptide. + tmeehan + 2010-12-07T03:42:09Z + FMA:63207 + cell + type D1 enteroendocrine cell + + + + + A P/D1 enteroendocrine cell that is argyrophilic and stores vasoactive intestinal polypeptide. + FMA:63207 + GOC:tfm + + + + + + + + + + + + + + + + An enteroendocrine cell of the small intestine that secretes motilin. + tmeehan + 2010-12-07T03:55:49Z + Mo enteroendocrine cell + FMA:63420 + cell + type M enteroendocrine cell + + + + + An enteroendocrine cell of the small intestine that secretes motilin. + GOC:tfm + PMID:15153415 + + + + + + + + + + + + + + + + + + + + + A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc + tmeehan + 2010-12-07T04:03:56Z + BTO:0002441 + FMA:84639 + cell + adventitial cell + + + + + A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the intestine. + tmeehan + 2011-01-17T03:39:38Z + intestinal smooth muscle cell + cell + enteric smooth muscle cell + + + + + + true + + + + + A smooth muscle cell of the intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD11b-positive dendritic cell that is CD11b-high, CD45-positive, MHC-II-positive and CD103-negative. + tmeehan + 2011-01-21T01:27:41Z + DC.103-11b+.Lv + cell + liver CD103-negative dendritic cell + + + + + + true + + + + + A CD11b-positive dendritic cell that is CD11b-high, CD45-positive, MHC-II-positive and CD103-negative. + GOC:tfm + http:http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A CD11b-positive dendritic cell that is CD11b-low, CD45-positive, MHC-II-high and CD103-positive that is located in the liver. + tmeehan + 2011-01-21T01:27:45Z + DC.103+11b-.Lv + cell + liver CD103-positive dendritic cell + + + + + + true + + + + + A CD11b-positive dendritic cell that is CD11b-low, CD45-positive, MHC-II-high and CD103-positive that is located in the liver. + GOC:tfm + http:http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A dermal dendritic cell isolated from skin draining lymph nodes that is langerin-positive, MHC-II-positive, and CD4-negative and CD8a-negative. + tmeehan + 2011-01-21T01:57:00Z + cell + langerin-positive lymph node dendritic cell + + + + + + true + + + + + A dermal dendritic cell isolated from skin draining lymph nodes that is langerin-positive, MHC-II-positive, and CD4-negative and CD8a-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A dermal dendritic cell isolated from skin draining lymph nodes that is langerin-negative, MHC-II-positive, and CD4-negative and CD8a-negative. + tmeehan + 2011-01-21T02:13:58Z + cell + langerin-negative, CD103-negative lymph node dendritic cell + + + + + + true + + + + + A dermal dendritic cell isolated from skin draining lymph nodes that is langerin-negative, MHC-II-positive, and CD4-negative and CD8a-negative. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A langerin-positive lymph node dendritic cell that is CD103-positive and CD11b-low. + tmeehan + 2011-01-21T02:07:54Z + cell + CD103-positive, langerin-positive lymph node dendritic cell + + + + + + true + + + + + A langerin-positive lymph node dendritic cell that is CD103-positive and CD11b-low. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + + + + + A langerin-positive lymph node dendritic cell that is CD103-negative and CD11b-high. + tmeehan + 2011-01-21T02:11:14Z + cell + CD103-negative, langerin-positive lymph node dendritic cell + + + + + + true + + + + + A langerin-positive lymph node dendritic cell that is CD103-negative and CD11b-high. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A langerin-negative lymph node dendritic cell that is CD103-negative and CD11b-low. + tmeehan + 2011-01-21T02:22:15Z + cell + CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell + + + + + + true + + + + + A langerin-negative lymph node dendritic cell that is CD103-negative and CD11b-low. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + + + + + + + + + + + A langerin-negative lymph node dendritic cell that is CD103-negative and CD11b-high. + tmeehan + 2011-01-21T02:16:21Z + cell + CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell + + + + + + true + + + + + A langerin-negative lymph node dendritic cell that is CD103-negative and CD11b-high. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A CD8alpha alpha positive gamma-delta intraepithelial T cell that expresses a TCR encoded in part by the Vgamma5 gene segment. + tmeehan + 2011-01-24T10:22:18Z + tgd.vg5+.IEL + cell + Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell + + + + + A CD8alpha alpha positive gamma-delta intraepithelial T cell that expresses a TCR encoded in part by the Vgamma5 gene segment. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + A CD8alpha alpha positive gamma-delta intraepithelial T cell that does not express a TCR partially encoded by the Vgamma5 gene segment. + tmeehan + 2011-01-24T10:25:44Z + tgd.vg5-.IEL + cell + Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell + + + + + A CD8alpha alpha positive gamma-delta intraepithelial T cell that does not express a TCR partially encoded by the Vgamma5 gene segment. + GOC:tfm + http://www.immgen.org/index_content.html + + + + + + + + + + An interrenal chromaffin cell found in teleosts that contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. + tmeehan + 2011-02-08T10:11:55Z + interrenal noradrenaline type cell + type n interrenal cell + cell + interrenal norepinephrine type cell + + + + + An interrenal chromaffin cell found in teleosts that contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. + GOC:MH + GOC:tfm + PMID:12668625 + + + + + + + + + A chromaffin cell interspersed among the interrenal epithelial layer of the anterior kidney of teloest fish. + tmeehan + 2011-02-08T10:21:35Z + cell + interrenal chromaffin cell + + + + + A chromaffin cell interspersed among the interrenal epithelial layer of the anterior kidney of teloest fish. + GOC:MH + GOC:tfm + PMID:12668625 + + + + + + + + + + An interrenal chromaffin cell found in teleosts that contain small, homogeneous electron-lucent granules that are separated from the vesicular membrane by a visible halo. + tmeehan + 2011-02-08T10:27:05Z + type a interrenal cell + cell + interrenal adrenaline secreting cell + interrenal epinephrin secreting cell + + + + + An interrenal chromaffin cell found in teleosts that contain small, homogeneous electron-lucent granules that are separated from the vesicular membrane by a visible halo. + GOC:MH + GOC:tfm + PMID:12668625 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the kidney. + tmeehan + 2011-02-08T10:46:34Z + KUPO:0001019 + cell + kidney epithelial cell + + + + + + true + + + + + An epithelial cell of the kidney. + GOC:tfm + KUPO:SJ + + + + + + + + + An interrenal epithelial kidney cell is an epithelial cell found in the anterior kidney of teleosts fish. This cell type is arranged in layers around the posterior cardinal vein and contains many mitochondria with tubulovesicular cristae. Interrenal chromaffin cells are interspersed among the tissue layer created by this cell type. + tmeehan + 2011-02-08T11:03:32Z + cell + interrenal epithelial cell + + + + + An interrenal epithelial kidney cell is an epithelial cell found in the anterior kidney of teleosts fish. This cell type is arranged in layers around the posterior cardinal vein and contains many mitochondria with tubulovesicular cristae. Interrenal chromaffin cells are interspersed among the tissue layer created by this cell type. + GOC:mh + GOC:tfm + PMID:12668625 + + + + + + + + + An insect excretory cell that regulates haemolymph composition by filtration and filtrate endocytosis. + tmeehan + 2011-02-08T01:34:56Z + BTO:0004597 + FMA:83807 + cell + nephrocyte + + + + + An insect excretory cell that regulates haemolymph composition by filtration and filtrate endocytosis. + GOC:tfm + PMID:19783135 + + + + + + + + + + + + + + + + + + + + A fat cell that is part of subcutaneous adipose tissue. + tmeehan + 2011-02-21T02:51:22Z + subcutaneous adipocyte + cell + subcutaneous fat cell + + + + + + true + + + + + A fat cell that is part of subcutaneous adipose tissue. + GOC:tfm + + + + + + + + + + + + + + + A renal filtration cell is a specialized cell of the renal system that filter fluids by charge, size or both. + tmeehan + 2011-02-08T01:37:59Z + cell + renal filtration cell + + + + + A renal filtration cell is a specialized cell of the renal system that filter fluids by charge, size or both. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells in the mesonephros + tmeehan + 2011-02-08T01:58:30Z + cell + mesonephric glomerular visceral epithelial cell + + + + + A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells in the mesonephros + GOC:tfm + + + + + + + + + A disseminated nephrocyte is a nephrocyte that filters hemolymph and is found at scattered locations in the fat body or other tissues. + tmeehan + 2011-02-08T02:07:33Z + cell + disseminated nephrocyte + + + + + A disseminated nephrocyte is a nephrocyte that filters hemolymph and is found at scattered locations in the fat body or other tissues. + GOC:tfm + PMID:19783135 + + + + + + + + + + + + + + + + + + + + A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells in the metanephros. + tmeehan + 2011-02-08T02:02:13Z + cell + metanephric glomerular visceral epithelial cell + + + + + A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells in the metanephros. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + A dermal dendritic cell that is CD1a-negative and CD14-positive. + CD14+ dermal DC + cell + They are also CD11c-positive, CD40-positive, CD85j-positive (ILT-2), CD163-positive, CD205-positive (DEC205), CD207-negative (langerin), CD209-positive (DC-SIGN), CD274-positive (PD-L1), CD324-negative (E-cadherin), Factor XIIIa-positive, LOX-I-positive, CLEC6-positive, Dectin-1-positive, and DCIR-positive. Upon stimulation, these cells are capable of producing IL1-beta, IL6, IL8, IL10, IL12p40, IL19, IL20, IL24, TGF-beta, TNF-alpha, GM-CSF, and MCP1. They reside in the dermis. + CD14-positive dermal dendritic cell + + + + + + true + + + + + A dermal dendritic cell that is CD1a-negative and CD14-positive. + GOC:dsd + PMID:19236899 + PMID:20309010 + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature CD14-positive dermal dendritic cell is CD80-low, CD86-low, and MHCII-low. + cell + immature CD14-positive dermal dendritic cell + + + + + + true + + + + + An immature CD14-positive dermal dendritic cell is CD80-low, CD86-low, and MHCII-low. + GOC:dsd + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature CD14-positive dermal dendritic cell is CD80-high, CD86-high, MHCII-high and is CD83-positive. + cell + mature CD14-positive dermal dendritic cell + + + + + + true + + + + + A mature CD14-positive dermal dendritic cell is CD80-high, CD86-high, MHCII-high and is CD83-positive. + GOC:dsd + + + + + + + + + + + + + + + + + + + + A dermal dendritic cell that is CD1a-positive and CD14-negative. + CD1a+ dermal DC + cell + Reside in the dermis. They are also CD11c-positive, CD40-positive, CD207-negative (langerin), CD209-negative (DC-SIGN), and CD324-negative (E-cadherin). When activated, they are capable of producing CXCL8 (IL-8) and IL-15. Possibly a precursor of Langerhans cells or equivalent of langerin-positive dermal DCs in the mouse. + CD1a-positive dermal dendritic cell + + + + + + true + + + + + A dermal dendritic cell that is CD1a-positive and CD14-negative. + GOC:dsd + PMID:20309010 + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature CD1a-positive dermal dendritic cell is CD80-low, CD86-low, and MHCII-low. + cell + immature CD1a-positive dermal dendritic cell + + + + + + true + + + + + An immature CD1a-positive dermal dendritic cell is CD80-low, CD86-low, and MHCII-low. + GOC:dsd + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature CD1a-positive dermal dendritic cell is CD80-high, CD83-positive, CD86-high, and MHCII-high. + cell + mature CD1a-positive dermal dendritic cell + + + + + + true + + + + + A mature CD1a-positive dermal dendritic cell is CD80-high, CD83-positive, CD86-high, and MHCII-high. + GOC:dsd + + + + + + + + + + + + + + + + + + + + + + + + A myeloid dendritic cell found in the blood that is CD16-positive. + CD16+ mDC + CD16-mDC + cell + Normally represent 65-75% of peripheral blood mDCs (human). They are also CD281-positive (TLR1), CD282-positive (TLR2), CD284-positive (TLR4), CD285-positive (TLR5), CD286-positive (TLR6), CD288-positive (TLR8), CD289-positive (TLR9), and CD290-positive (TLR10) by RT-PCR [PMID:17332250]. Upon TLR stimulation, these cells are potent producers of TNF-alpha, while producing little CXCL8 (IL8). + CD16-positive myeloid dendritic cell + + + + + + true + + + + + A myeloid dendritic cell found in the blood that is CD16-positive. + GOC:dsd + PMID:17332250 + + + + + + + + + + + + + + + + + + + + + + + + + + + + An immature CD16-positive myeloid dendritic cell is CD80-low, CD86-low, and MHCII-low. + cell + immature CD16-positive myeloid dendritic cell + + + + + + true + + + + + An immature CD16-positive myeloid dendritic cell is CD80-low, CD86-low, and MHCII-low. + GOC:dsd + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature CD16-positive myeloid dendritic cell is CD80-high, CD83-positive, CD86-high, and MHCII-high. + cell + mature CD16-positive myeloid dendritic cell + + + + + + true + + + + + A mature CD16-positive myeloid dendritic cell is CD80-high, CD83-positive, CD86-high, and MHCII-high. + GOC:dsd + + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the cervix. + tmeehan + 2011-02-24T08:20:08Z + cervical canal epithelial cell + cervical canal of uterus epithelial cell + cervix epithelial cell + cervix of uterus epithelial cell + epithelial cell of cervical canal + epithelial cell of cervical canal of uterus + epithelial cell of cervix of uterus + epithelial cell of neck of uterus + epithelial cell of uterine cervix + neck of uterus epithelial cell + uterine cervix epithelial cell + cell + epithelial cell of cervix + + + + + + true + + + + + An epithelial cell of the cervix. + GOC:tfm + + + + + cervical canal epithelial cell + GOC:tfm + + + + + cervical canal of uterus epithelial cell + GOC:tfm + + + + + cervix epithelial cell + GOC:tfm + + + + + cervix of uterus epithelial cell + GOC:tfm + + + + + epithelial cell of cervical canal + GOC:tfm + + + + + epithelial cell of cervical canal of uterus + GOC:tfm + + + + + epithelial cell of cervix of uterus + GOC:tfm + + + + + epithelial cell of neck of uterus + GOC:tfm + + + + + epithelial cell of uterine cervix + GOC:tfm + + + + + neck of uterus epithelial cell + GOC:tfm + + + + + uterine cervix epithelial cell + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the amnion. + tmeehan + 2011-02-28T12:38:01Z + amniotic epithelial cell + cell + epithelial cell of amnion + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the amnion. + GOC:tfm + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell of the amnion membrane. + tmeehan + 2011-02-28T12:44:24Z + amniotic membrane stem cell + cell + amnion mesenchymal stem cell + + + + + A mesenchymal stem cell of the amnion membrane. + GOC:tfm + PMID:20446274 + PMID:21339039 + + + + + + + + + + + + + + + + + + + + An epithelial cell of the intrahepatic portion of the bile duct. + tmeehan + 2011-02-28T01:20:20Z + cell + intrahepatic bile duct epithelial cell + + + + + + true + + + + + An epithelial cell of the intrahepatic portion of the bile duct. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the aorta. + tmeehan + 2011-02-28T01:42:12Z + BTO:0004577 + cell + aortic smooth muscle cell + + + + + + true + + + + + A smooth muscle cell of the aorta. + GOC:tfm + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell that is part of the bone marrow. + tmeehan + 2011-02-28T01:47:47Z + cell + mesenchymal stem cell of the bone marrow + + + + + A mesenchymal stem cell that is part of the bone marrow. + GOC:tfm + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell of the chorionic membrane. + tmeehan + 2011-02-28T03:04:35Z + cell + chorionic membrane mesenchymal stem cell + + + + + A mesenchymal stem cell of the chorionic membrane. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the vein. + tmeehan + 2011-02-28T03:48:11Z + CL:1000393 + FMA:62104 + KUPO:0001099 + endothelial cell of vein + venous endothelial cell + cell + vein endothelial cell + + + + + + true + + + + + An endothelial cell that is part of the vein. + GOC:tfm + + + + + + + + + An arterial endothelial cell that is part of the aorta endothelium. + tmeehan + 2011-02-28T03:54:42Z + BTO:0003245 + CALOHA:TS-0047 + cell + aortic endothelial cell + + + + + An arterial endothelial cell that is part of the aorta endothelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the thoracic endothelium. + tmeehan + 2011-02-28T03:59:09Z + cell + thoracic aorta endothelial cell + + + + + + true + + + + + An endothelial cell that is part of the thoracic endothelium. + GOC:tfm + + + + + + + + + + An endothelial progenitor cell that participates in angiogenesis during development. + tmeehan + 2011-02-28T04:20:39Z + cell + See CL:0002619. + embryonic blood vessel endothelial progenitor cell + + + + + An endothelial progenitor cell that participates in angiogenesis during development. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast of the aortic adventitia. + tmeehan + 2011-02-28T04:43:41Z + cell + fibroblast of the aortic adventitia + + + + + + true + + + + + A fibroblast of the aortic adventitia. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the heart. + tmeehan + 2011-02-28T04:57:44Z + cardiac fibroblast + cell + fibroblast of cardiac tissue + + + + + + true + + + + + + true + + + + + A fibroblast that is part of the heart. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the choroid plexus. + tmeehan + 2011-02-28T05:01:39Z + cell + fibroblast of choroid plexus + + + + + + true + + + + + A fibroblast that is part of the choroid plexus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the conjuctiva of the eye. + tmeehan + 2011-02-28T05:03:44Z + cell + fibroblast of the conjunctiva + + + + + A fibroblast that is part of the conjuctiva of the eye. + GOC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-02-28T05:05:33Z + cell + fibroblast of dermis + + + + + + true + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-02-28T05:09:12Z + cell + fibroblast of gingiva + + + + + + true + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of lung. + tmeehan + 2011-02-28T05:11:03Z + BTO:0000764 + CALOHA:TS-0575 + cell + fibroblast of lung + + + + + + true + + + + + A fibroblast that is part of lung. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast of the lymphatic system. + tmeehan + 2011-02-28T05:16:18Z + cell + fibroblast of lymphatic vessel + + + + + + true + + + + + A fibroblast of the lymphatic system. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the mammary gland. + tmeehan + 2011-02-28T05:18:38Z + cell + fibroblast of mammary gland + + + + + + true + + + + + A fibroblast that is part of the mammary gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast of the periodontium. + tmeehan + 2011-02-28T05:19:48Z + cell + fibroblast of periodontium + + + + + + true + + + + + A fibroblast of the periodontium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast of pulmonary artery. + tmeehan + 2011-02-28T05:22:27Z + cell + fibroblast of pulmonary artery + + + + + + true + + + + + A fibroblast of pulmonary artery. + GOC:tfm + + + + + + + + + + + + + + + A fibroblast that is part of villous mesenchyme. + tmeehan + 2011-02-28T05:24:28Z + cell + fibroblast of villous mesenchyme + + + + + A fibroblast that is part of villous mesenchyme. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An animal cell that is part of a hair follicle. + tmeehan + 2011-03-01T04:11:01Z + cell + hair follicle cell + + + + + + true + + + + + An animal cell that is part of a hair follicle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + An epithelial cell that resides in the inner root sheath of the hair follicle. + tmeehan + 2011-03-01T04:27:51Z + cell + inner root sheath cell + + + + + + true + + + + + + true + + + + + An epithelial cell that resides in the inner root sheath of the hair follicle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the outer root sheath. + tmeehan + 2011-03-01T04:29:47Z + cell + outer root sheath cell + + + + + + true + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the outer root sheath. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epidermal cell that is part of the germinal matrix. + tmeehan + 2011-03-01T04:31:06Z + trichocyte + cell + hair germinal matrix cell + + + + + + true + + + + + An epidermal cell that is part of the germinal matrix. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the intestine. + tmeehan + 2011-03-01T05:18:31Z + cell + intestinal epithelial cell + + + + + + true + + + + + An epithelial cell of the intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A connective tissue cell of the nucleus pulposus cell of intervertebral disc. + tmeehan + 2011-03-02T02:12:23Z + cell + nucleus pulposus cell of intervertebral disc + + + + + A connective tissue cell of the nucleus pulposus cell of intervertebral disc. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A pigment cell located in the epithelium of the iris. + tmeehan + 2011-03-01T05:28:52Z + cell + iris pigment epithelial cell + + + + + + true + + + + + A pigment cell located in the epithelium of the iris. + GOC:tfm + + + + + + + + + A melanocyte that appears darker due to content or amount of melanin granules. + tmeehan + 2011-03-01T05:57:11Z + cell + dark melanocyte + + + + + A melanocyte that appears darker due to content or amount of melanin granules. + GOC:tfm + + + + + + + + + A melanocyte that appears lighter in color. + tmeehan + 2011-03-01T05:58:23Z + cell + light melanocyte + + + + + A melanocyte that appears lighter in color. + GOC:tfm + + + + + + + + + A mesenchymal stem cell that is part of Wharton's jelly. + tmeehan + 2011-03-01T09:51:18Z + cell + mesenchymal stem cell of Wharton's jelly + + + + + A mesenchymal stem cell that is part of Wharton's jelly. + GOC:tfm + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell of the umbilical cord. + tmeehan + 2011-03-01T09:55:12Z + cell + mesenchymal stem cell of umbilical cord + + + + + A mesenchymal stem cell of the umbilical cord. + GOC:tfm + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell of adipose tissue. + tmeehan + 2011-03-01T09:57:17Z + cell + mesenchymal stem cell of adipose + + + + + A mesenchymal stem cell of adipose tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell of liver. + tmeehan + 2011-03-01T09:58:51Z + cell + hepatic mesenchymal stem cell + + + + + + true + + + + + A mesenchymal stem cell of liver. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A mesenchymal stem cell of the vertebrae. + tmeehan + 2011-03-01T10:40:27Z + cell + vertebral mesenchymal stem cell + + + + + + true + + + + + A mesenchymal stem cell of the vertebrae. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. + tmeehan + 2011-03-02T01:19:27Z + BTO:0001220 + CALOHA:TS-0898 + cell + Schwann cell + + + + + + true + + + + + A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A stromal cell of the pancreas. + tmeehan + 2011-03-02T02:40:41Z + cell + stromal cell of pancreas + + + + + + true + + + + + A stromal cell of the pancreas. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A pericyte of the central nervous system. + tmeehan + 2011-03-02T02:54:18Z + cell + central nervous system pericyte + + + + + + true + + + + + A pericyte of the central nervous system. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A myofibroblast that lies in the connective tissue of the spinal cord that has a distinctly lamellar arrangement. + tmeehan + 2011-03-02T03:03:58Z + cell + perineural cell + + + + + + true + + + + + A myofibroblast that lies in the connective tissue of the spinal cord that has a distinctly lamellar arrangement. + GO:tfm + http://en.wikipedia.org/wiki/Perineurium + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the placenta. + tmeehan + 2011-03-02T03:21:30Z + cell + placental epithelial cell + + + + + + true + + + + + + true + + + + + An epithelial cell of the placenta. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A preadipocyte found in mesenteric tissue. + tmeehan + 2011-03-03T04:19:40Z + cell + mesenteric preadipocyte + + + + + + true + + + + + A preadipocyte found in mesenteric tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-03-03T04:19:42Z + cell + omentum preadipocyte + + + + + + true + + + + + + + + + + + + + + + + + + + + A preadipocyte that is part of the breast. + tmeehan + 2011-03-03T04:19:46Z + cell + preadipocyte of the breast + + + + + + true + + + + + A preadipocyte that is part of the breast. + GOC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-03-03T04:20:04Z + cell + perirenal preadipocyte + + + + + + true + + + + + + + + + A preadipocyte that is part of visceral tissue. + tmeehan + 2011-03-03T04:32:56Z + cell + visceral preadipocyte + + + + + A preadipocyte that is part of visceral tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A preadipocyte that is part of subcutaneous tissue. + tmeehan + 2011-03-03T04:33:01Z + cell + subcutaneous preadipocyte + + + + + + true + + + + + A preadipocyte that is part of subcutaneous tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the kidney cortex. + KUPO:0001016 + cell + renal cortical epithelial cell + + + + + + true + + + + + + true + + + + + An epithelial cell of the kidney cortex. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A blood vessel endothelial cell that is part of the retina. + tmeehan + 2011-03-06T03:28:27Z + cell + retinal blood vessel endothelial cell + + + + + + true + + + + + A blood vessel endothelial cell that is part of the retina. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the retinal pigmented epithelium. + tmeehan + 2011-03-06T03:37:09Z + BTO:0004910 + FMA:75802 + cell + retinal pigment epithelial cell + + + + + + true + + + + + An epithelial cell of the retinal pigmented epithelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the umbilical vein. + tmeehan + 2011-03-06T05:00:51Z + cell + smooth muscle cell of the umbilical vein + + + + + + true + + + + + A smooth muscle cell of the umbilical vein. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the bachiocephalic vasculature. + tmeehan + 2011-03-06T05:00:58Z + cell + smooth muscle cell of the brachiocephalic vasculature + + + + + + true + + + + + A smooth muscle cell of the bachiocephalic vasculature. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vascular associated smooth muscle cell of the brain vasculature. + tmeehan + 2011-03-06T05:01:20Z + cell + smooth muscle cell of the brain vasculature + + + + + + true + + + + + A vascular associated smooth muscle cell of the brain vasculature. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle of the pulmonary artery. + tmeehan + 2011-03-06T05:01:28Z + BTO:0003336 + cell + smooth muscle cell of the pulmonary artery + + + + + + true + + + + + A smooth muscle of the pulmonary artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the coronary artery. + tmeehan + 2011-03-06T05:01:34Z + cell + smooth muscle cell of the coronary artery + + + + + + true + + + + + A smooth muscle cell of the coronary artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle of the internal thoracic artery. + tmeehan + 2011-03-06T05:01:41Z + cell + smooth muscle cell of the internal thoracic artery + + + + + + true + + + + + A smooth muscle of the internal thoracic artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the umbilical artery. + tmeehan + 2011-03-06T05:01:48Z + cell + smooth muscle cell of the umbilical artery + + + + + + true + + + + + A smooth muscle cell of the umbilical artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the subclavian artery. + tmeehan + 2011-03-06T05:01:52Z + cell + smooth muscle cell of the subclavian artery + + + + + + true + + + + + A smooth muscle cell of the subclavian artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + Smooth muscle cell of the carotid artery. + tmeehan + 2011-03-06T05:01:56Z + cell + smooth muscle cell of the carotid artery + + + + + + true + + + + + Smooth muscle cell of the carotid artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the bladder. + tmeehan + 2011-03-06T05:43:24Z + KUPO:0001122 + cell + smooth muscle cell of bladder + + + + + + true + + + + + A smooth muscle cell of the bladder. + GC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-03-06T05:46:39Z + BTO:0004402 + cell + bronchial smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the esophagus. + tmeehan + 2011-03-06T05:48:17Z + cell + smooth muscle cell of the esophagus + + + + + + true + + + + + A smooth muscle cell of the esophagus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the trachea. + tmeehan + 2011-03-06T05:50:28Z + cell + smooth muscle cell of trachea + + + + + + true + + + + + A smooth muscle cell of the trachea. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell of the uterus. + tmeehan + 2011-03-06T05:53:28Z + cell + uterine smooth muscle cell + + + + + + true + + + + + A smooth muscle cell of the uterus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-03-06T06:50:53Z + anulus pulposus cell + cell + annulus pulposus cell + + + + + + true + + + + + + + + + + + + + + + + + + + + An astrocyte of the cerebellum. + tmeehan + 2011-03-06T06:57:27Z + cell + astrocyte of the cerebellum + + + + + + true + + + + + An astrocyte of the cerebellum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-03-06T06:57:33Z + cell + astrocyte of the hippocampus + + + + + + true + + + + + + + + + + + + + + + + + + + + An astrocyte of the cerebral cortex. + tmeehan + 2011-03-06T06:57:36Z + cell + astrocyte of the cerebral cortex + + + + + + true + + + + + An astrocyte of the cerebral cortex. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An astrocyte of the spinal cord. + tmeehan + 2011-03-06T07:11:26Z + cell + astrocyte of the spinal cord + + + + + + true + + + + + An astrocyte of the spinal cord. + GOC:tfm + + + + + + + + + A neural crest cell that gives rise to cells of the enteric nervous system. + tmeehan + 2011-03-06T07:24:35Z + cell + migratory enteric neural crest cell + + + + + A neural crest cell that gives rise to cells of the enteric nervous system. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A neuron of the hippocampus. + tmeehan + 2011-03-06T07:31:49Z + cell + hippocampal neuron + + + + + + true + + + + + A neuron of the hippocampus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A CNS neuron of the cerebral cortex. + tmeehan + 2011-03-06T07:37:08Z + BTO:0004102 + FMA:84104 + cortical neuron + cell + neuron of cerebral cortex + + + + + + true + + + + + A CNS neuron of the cerebral cortex. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A neuron of the raphe nuclei. + tmeehan + 2011-03-06T07:42:06Z + cell + raphe nuclei neuron + + + + + + true + + + + + A neuron of the raphe nuclei. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A CNS neuron of the dorsal spinal cord. + tmeehan + 2011-03-06T07:43:34Z + cell + neuron of the dorsal spinal cord + + + + + + true + + + + + A CNS neuron of the dorsal spinal cord. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A neuron of the ventral spinal cord. + tmeehan + 2011-03-06T07:46:03Z + cell + neuron of the ventral spinal cord + + + + + + true + + + + + A neuron of the ventral spinal cord. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A neuron of the striatum. + tmeehan + 2011-03-06T07:47:12Z + cell + striatum neuron + + + + + + true + + + + + A neuron of the striatum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A neuron of the substantia nigra. + tmeehan + 2011-03-06T07:48:42Z + cell + neuron of the substantia nigra + + + + + + true + + + + + A neuron of the substantia nigra. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fat cell that is part of omentum tissue. + tmeehan + 2011-03-14T10:17:00Z + omental adipocyte + omental fat cell + cell + adipocyte of omentum tissue + + + + + + true + + + + + A fat cell that is part of omentum tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fat cell of perirenal fat tissue. + tmeehan + 2011-03-14T10:17:05Z + perirenal fat cell + cell + perirenal adipocyte cell + + + + + + true + + + + + A fat cell of perirenal fat tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fat cell that is part of the breast. + tmeehan + 2011-03-14T10:17:07Z + CALOHA:TS-2377 + breast adipocyte + fat cell of breast + cell + Adipocytes found in the subcutaneous adipose tissue of breast. The breast consists of three main components, the skin, the subcutaneous adipose tissue and the functional glandular tissue that comprises both parenchyma and stroma.[CALOHA] + adipocyte of breast + + + + + + true + + + + + A fat cell that is part of the breast. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell of the umbilical vein. + tmeehan + 2011-03-14T11:36:51Z + BTO:0004296 + cell + endothelial cell of umbilical vein + + + + + An endothelial cell of the umbilical vein. + GOC:tfm + + + + + + + + + An adult angioblastic cell released from the bone marrow, capable of blood circulation and participation in angiogenesis by differentiating into blood vessel endothelial cells. Their existence is controversial. + tmeehan + 2011-03-14T12:11:18Z + EPC + cell + adult endothelial progenitor cell + + + + + An adult angioblastic cell released from the bone marrow, capable of blood circulation and participation in angiogenesis by differentiating into blood vessel endothelial cells. Their existence is controversial. + GOC:tfm + PMID:20807818 + PMID:9020076 + + + + + + + + + + + + + + + + + + + + A fibroblast of skin. + tmeehan + 2011-03-14T12:31:49Z + BTO:0001255 + CALOHA:TS-0935 + cell + skin fibroblast + + + + + + true + + + + + A fibroblast of skin. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-03-14T12:46:28Z + cell + gingival epithelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + A stromal cell of the prostate. + tmeehan + 2011-03-14T02:11:10Z + BTO:0003972 + cell + prostate stromal cell + + + + + + true + + + + + A stromal cell of the prostate. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An acinar cell of salivary gland. + tmeehan + 2011-03-14T02:22:22Z + cell + acinar cell of salivary gland + + + + + + true + + + + + An acinar cell of salivary gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A paneth cell of the appendix. + tmeehan + 2011-03-15T09:38:18Z + cell + paneth cell of the appendix + + + + + + true + + + + + A paneth cell of the appendix. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A cell of the seminiferous tubule epithelium. + tmeehan + 2011-03-15T11:59:23Z + cell + seminiferous tubule epithelial cell + + + + + + true + + + + + A cell of the seminiferous tubule epithelium. + GOC:tfm + + + + + + + + + An immature astrocyte. + immature astrocytic glia + cell + immature astrocyte + + + + + An immature astrocyte. + GOC:dsd + + + + + + + + + A mature astrocyte that is capable of producing cytokines. + activated astrocyte + mature astrocytic glia + cell + Mature astrocytes are reportedly able to produce aspartate, ATP, BDNF, BMP-2a, BMP-3, CCL2, CCL3, CCL4, CCL5, CCL19, CCL20,CD40L, CNTF, CTGF, CXCL1, CXCL2, CXCL8, edn-1, aFGF, bFGF, G-CSF, glutamate, GM-CSF, IFN-alpha, IFN-beta, IFN-gamma, IGF-1, IL-1alpha, IL-1beta, IL-2, Il-4, IL-6, IL-10, IL-12, LIF, MIP-2, NGF, nitric oxide, NT3, taurine, TGF-beta, TNF-alpha, TNF-beta. + mature astrocyte + + + + + A mature astrocyte that is capable of producing cytokines. + GOC:dsd + PMID:12898703 + PMID:8734446 + + + + + + + + + An immature microglial cell with a ramified morphology. + immature microglia + quiescent microglia + resting microglia + cell + Immature microglia are reportedly CD34-positive, CD163-negative, MHCI-negative, MHCII-negative. + immature microglial cell + + + + + An immature microglial cell with a ramified morphology. + GOC:dsd + PMID:18396103 + PMID:19461673 + + + + + quiescent microglia + PMID:18396103 + + + + + resting microglia + PMID:18396103 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A mature microglial cell that has changed shape to an amoeboid morphology and is capable of cytokine production and antigen presentation. + activated microglia + mature microglia + reactive microglia + cell + Mature microglia are reportedly CCR2-positive, CD4-positive, CD9-positive, CD11a-positive, CD11b-positive, CD11c-positive, CD13-positive, CD16-positive, CDw17-positive, CD18-positive, CD21-positive, CD26-negative, CD32-positive, CD35-positive, CD36-positive, CD40-positive, CD44-positive, CD45-positive, CD53-positive, CD54-positive, CD56-negative, CD58-positive, CD63-positive, CD64-positive, CD66-positive, CD80-positive, CD86-positive, CD87-positive, CD92-positive, CD106-positive, CD107a-positive, CD147-positive, CD155-positive, CD162-positive, CD163-positive, CD171-negative, CD200R-positive, CXCR3-positive, CX3CR1-positive, fibronectin-positive, GD3-positive, GLUT1-positive, GLUT3-negative, GLUT5-positive, MHCI-positive, MHCII-positive, P2X4-positive, RFD7-negative, RGS5-negative, alpha-SMA-negative, vimentin-positive, and vwf-negative. Mature microglia are capable of producing BDNF, CCL3, CCL5, CCL7, CCL8, CCL9, CCL19, CCL20,CD40L, CSF, CXCL1, CXCL2, CXCL4, CXCL5, CXCL8, CXCL9, CXCL10, glutamate, IL-1beta, IL-1ra, IL-3, IL-6, IL-10, IL-12, LT, MMP-2, MMP-9, NGF, nitric oxide, ROS, TGF-beta, TNF-alpha. + mature microglial cell + + + + + + true + + + + + A mature microglial cell that has changed shape to an amoeboid morphology and is capable of cytokine production and antigen presentation. + GOC:dsd + PMID:11517395 + PMID:14612429 + PMID:15246020 + PMID:16177057 + PMID:18396103 + PMID:20021364 + + + + + activated microglia + PMID:18396103 + + + + + reactive microglia + PMID:18396103 + + + + + + + + + A spore formed from bacteria in the order Actinomycetales. + tmeehan + 2011-06-16T01:01:41Z + cell + actinomycete-type spore + + + + + A spore formed from bacteria in the order Actinomycetales. + GO:0034304 + GOC:tfm + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-06-21T12:28:55Z + cell + epithelial cell of upper respiratory tract + + + + + + true + + + + + + + + + + + + + + + + + + + + tmeehan + 2011-06-21T12:29:31Z + cell + epithelial cell of lower respiratory tract + + + + + + true + + + + + + + + + + A basal cell in the respiratory tract. + tmeehan + 2011-06-21T03:11:10Z + airway basal cell + airway basal stem cell + cell + respiratory basal cell + + + + + A basal cell in the respiratory tract. + GOC:tfm + PMID:20699479 + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the anal column. + tmeehan + 2011-07-08T12:11:38Z + cell + epithelial cell of anal column + + + + + + true + + + + + + true + + + + + An epithelial cell of the anal column. + GOC:tfm + + + + + + + + + A nonkeratinized epithelial cell of the anal canal. + tmeehan + 2011-07-08T02:05:33Z + FMA:263146 + cell + nonkeratinized epithelial cell of anal column + + + + + A nonkeratinized epithelial cell of the anal canal. + GOC:tfm + + + + + + + + + + A nonkeratinized cell epithleial cell of the inferior part of the anal canal. + tmeehan + 2011-07-08T02:06:53Z + FMA:263144 + cell + nonkeratinized epithelial cell of inferior part of anal canal + + + + + A nonkeratinized cell epithleial cell of the inferior part of the anal canal. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell of the anal canal that is keratinized. This cell type is found towards the lower, rectal end of the anal canal. + tmeehan + 2011-07-08T02:08:40Z + cell + keratinized epithelial cell of the anal canal + + + + + An epithelial cell of the anal canal that is keratinized. This cell type is found towards the lower, rectal end of the anal canal. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole. This cell types gives rise to alveolar cell types and Clara cells in response to lung injury. This cell type expresses markers Scgb1a1 and Sftpc. + tmeehan + 2011-06-21T03:26:08Z + BASC + basal epithelial cell of bronchioalveolar duct junction + cell + bronchioalveolar stem cell + + + + + + true + + + + + A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole. This cell types gives rise to alveolar cell types and Clara cells in response to lung injury. This cell type expresses markers Scgb1a1 and Sftpc. + GOC:tfm + PMID:15960971 + + + + + + + + + + An amniotic stem cell is a mesenchymalstem cell extracted from amniotic fluid. Amniotic stem cells are able to differentiate into various tissue type such as skin, cartilage, cardiac tissue, nerves, muscle, and bone + tmeehan + 2011-06-21T03:55:39Z + cell + Not clear to me if amniotic stem cell is a different cell type from amnion mesenchymal stem cells. They are treated as distinct in the literature as isolations methods are different, so I will keep them as separate terms for now. + amniotic stem cell + + + + + An amniotic stem cell is a mesenchymalstem cell extracted from amniotic fluid. Amniotic stem cells are able to differentiate into various tissue type such as skin, cartilage, cardiac tissue, nerves, muscle, and bone + GOC:tfm + PMID:20942606 + + + + + + + + + An epithelial fate stem cell derived form the amnion membrane. + tmeehan + 2011-06-21T04:06:17Z + cell + amniotic epithelial stem cell + + + + + An epithelial fate stem cell derived form the amnion membrane. + GOC:tfm + PMID:20446274 + + + + + + + + + An epithelial cell of the esophageal gland proper. + tmeehan + 2011-07-08T02:16:51Z + FMA:256141 + cell + epithelial cell of esophageal gland proper + + + + + An epithelial cell of the esophageal gland proper. + GOC:tfm + + + + + + + + + An epithelial cell of the esophageal cardiac gland that occurs both in the proximal and distal esophagus, within the lamina propia. + tmeehan + 2011-07-08T02:16:54Z + FMA:256143 + cell + epithelial cell of esophageal cardiac gland + + + + + An epithelial cell of the esophageal cardiac gland that occurs both in the proximal and distal esophagus, within the lamina propia. + GOC:tfm + http://web.mac.com/wjkrause/iWeb/Histology/Blog/E3FA5916-1AA9-4885-B579-5051838D98CB.html + + + + + + + + + An epithelial cell of stratum corneum of esophageal epithelium that lacks keratin. + tmeehan + 2011-07-08T02:22:09Z + FMA:263148 + cell + nonkeratinized cell of stratum corneum of esophageal epithelium + + + + + An epithelial cell of stratum corneum of esophageal epithelium that lacks keratin. + GOC:tfm + + + + + + + + + An endothelial cell of viscerocranial mucosa that is part of the tympanic region of the viscerocranial mucosa. + tmeehan + 2011-07-08T02:25:44Z + FMA:70628 + cell + endo-epithelial cell of tympanic part of viscerocranial mucosa + + + + + An endothelial cell of viscerocranial mucosa that is part of the tympanic region of the viscerocranial mucosa. + GOC:tfm + + + + + + + + + An endocranial viscerocranial mucosa cell that is part of viscerocranial mucosa. + tmeehan + 2011-07-08T02:25:46Z + FMA:70629 + cell + endo-epithelial cell of pharyngotympanic part of viscerocranial mucosa + + + + + An endocranial viscerocranial mucosa cell that is part of viscerocranial mucosa. + GOC:tfm + + + + + + + + An ecto-epithelial cell of the buccal region of the viscerocranial mucosa. + tmeehan + 2011-07-08T02:34:12Z + FMA:70577 + cell + obsolete epithelial cell of buccal part of viscerocranial mucosa + true + + + + + An ecto-epithelial cell of the buccal region of the viscerocranial mucosa. + GOC:tfm + + + + + + + + An ecto-epithelial cell of the palatal region of the viscerocranial mucosa. + tmeehan + 2011-07-08T02:34:14Z + FMA:70580 + cell + obsolete epithelial cell of anterior palatal part of viscerocranial mucosa + true + + + + + An ecto-epithelial cell of the palatal region of the viscerocranial mucosa. + GOC:tfm + + + + + + + + An ecto-epithelial cell of the nasal region of the viscerocranial mucosa. + tmeehan + 2011-07-08T02:36:06Z + FMA:70554 + cell + obsolete epithelial cell of nasal part of viscerocranial mucosa + true + + + + + An ecto-epithelial cell of the nasal region of the viscerocranial mucosa. + GOC:tfm + + + + + + + + An ecto-epithelial cell of the gingival region of the viscerocranial mucosa. + tmeehan + 2011-07-08T02:36:11Z + FMA:70579 + cell + obsolete epithelial cell of gingival part of viscerocranial mucosa + true + + + + + An ecto-epithelial cell of the gingival region of the viscerocranial mucosa. + GOC:tfm + + + + + + + + An ecto-epithelial cell of the paranasal region of the viscerocranial mucosa. + tmeehan + 2011-07-08T02:38:18Z + FMA:70578 + cell + obsolete epithelial cell of paranasal sinus part of viscerocranial mucosa + true + + + + + An ecto-epithelial cell of the paranasal region of the viscerocranial mucosa. + GOC:tfm + + + + + + + + + An endothelial cell that is part of the venous sinus of spleen. This endothelial cell has an elongated, spindle-shaped, flattened morphology that is parallel to long axis of sinus. This cell type rests on a basement membrane interrupted by numerous narrow slits. + tmeehan + 2011-07-08T03:06:49Z + FMA:72140 + stave cell + cell + endothelial cell of venous sinus of spleen + + + + + An endothelial cell that is part of the venous sinus of spleen. This endothelial cell has an elongated, spindle-shaped, flattened morphology that is parallel to long axis of sinus. This cell type rests on a basement membrane interrupted by numerous narrow slits. + GOC:tfm + + + + + stave cell + FMA:62817 + + + + + + + + + + A venule endothelial cell that is cubodial, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream. + tmeehan + 2011-07-08T03:14:10Z + FMA:67759 + HEV cell + endothelial cell of postcapillary venule of lymph node + cell + Markers expressed on HEV include: MAdCAM-1,PNAd (sulfated and glycosylated molecules, i.e. GlyCAM-1, CD34, endomucin, nepmucin), ICAM-1, ICAM-2,Fuc-TVII, beta 3GlcNAcT-3, GlcNAc6ST2,CCL21, CCL19, CXCL13, CXCL12, Autotaxin, DARC, angiomodulin, LRHG. + endothelial cell of high endothelial venule + + + + + A venule endothelial cell that is cubodial, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream. + GOC:tfm + PMID:20726857 + + + + + + + + + + A endothelial cell of the venule that is squamous shaped. This is in contrast to the cubodial shape of high endothelial venule cells. + tmeehan + 2011-07-08T03:31:25Z + cell + squamous endothelial cell + + + + + A endothelial cell of the venule that is squamous shaped. This is in contrast to the cubodial shape of high endothelial venule cells. + GOC:tfm + + + + + + + + + An epithelial cell of stratum corneum of esophageal epithelium. + tmeehan + 2011-07-08T03:46:35Z + FMA:70733 + cell + epithelial cell of stratum corneum of esophageal epithelium + + + + + An epithelial cell of stratum corneum of esophageal epithelium. + GOC:tfm + + + + + + + + + An epithelial cell of stratum spinosum of esophageal epithelium. + tmeehan + 2011-07-08T03:48:26Z + FMA:70732 + cell + epithelial cell of stratum spinosum of esophageal epithelium + + + + + An epithelial cell of stratum spinosum of esophageal epithelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A glandular epithelial cell of the endometrium. + tmeehan + 2011-07-08T03:54:08Z + FMA:86489 + cell + glandular cell of endometrium + + + + + A glandular epithelial cell of the endometrium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A glandular epithelial cell of the esophagus. + tmeehan + 2011-07-08T03:55:57Z + FMA:86548 + cell + glandular cell of esophagus + + + + + + true + + + + + + true + + + + + A glandular epithelial cell of the esophagus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A glandular epithelial cell of the large intestine. + tmeehan + 2011-07-08T04:03:01Z + FMA:87194 + cell + glandular cell of the large intestine + + + + + + true + + + + + A glandular epithelial cell of the large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A glandular epithelial cell that is part of the stomach. + tmeehan + 2011-07-11T01:20:35Z + CALOHA:TS-1284 + FMA:86554 + cell + glandular cell of stomach + + + + + + true + + + + + A glandular epithelial cell that is part of the stomach. + GOC:tfm + + + + + + + + + A luminal epithelial cell of mammary gland located in acinus of structure. + tmeehan + 2011-07-11T01:44:31Z + FMA:74505 + cell + Consider if synonymous with mammary alveolar cell CL:0002325. Some use this term to refer to the non-lactating cell type that gives rise to the lactating cell type. + luminal cell of acinus of lactiferous gland + + + + + A luminal epithelial cell of mammary gland located in acinus of structure. + GOC:tfm + + + + + + + + + A luminal cell of terminal ducts, i.e.e the terminal branch of a lactiferous duct which alveolar cells drain into. + tmeehan + 2011-07-11T01:44:33Z + FMA:87168 + cell + luminal cell of lactiferous terminal ductal lobular unit + + + + + A luminal cell of terminal ducts, i.e.e the terminal branch of a lactiferous duct which alveolar cells drain into. + GOC:tfm + + + + + + + + + A luminal epithelial cell of the lactiferous duct. This cuboidal epithelial cell expresses keratin-18 and is estrogen-receptor alpha positive. + tmeehan + 2011-07-11T01:44:48Z + FMA:74504 + FMA:74505 + cell + luminal cell of lactiferous duct + + + + + A luminal epithelial cell of the lactiferous duct. This cuboidal epithelial cell expresses keratin-18 and is estrogen-receptor alpha positive. + GOC:tfm + PMID:19022771 + + + + + + + + + + + + + + + + + + + + A myocardial endocrine cell that is part of the atrium. + tmeehan + 2011-07-11T02:45:39Z + FMA:83389 + cell + myocardial endocrine cell of atrium + + + + + + true + + + + + A myocardial endocrine cell that is part of the atrium. + GOC:tfm + + + + + + + + + A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart. + tmeehan + 2011-07-11T03:15:38Z + cell + Discrepancy in develops from origins prevents me from making the assertion that cardioblasts give rise to all instances of cardiocytes as we state cardiac muscle cells develop from cardiac myoblast, which in turn develop from muscle stem cell. + cardioblast + + + + + A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart. + GOC:tfm + PMID:19745164 + + + + + + + + + + + + + + + A fibrocyte of the cochlea that has specialized structural and molecular adaptions. + tmeehan + 2011-07-11T03:35:01Z + cell + otic fibrocyte + + + + + A fibrocyte of the cochlea that has specialized structural and molecular adaptions. + GOC:tfm + PMID:18353863 + + + + + + + + + An otic fibrocyte that underlies the spiral prominence and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph. + tmeehan + 2011-07-11T03:40:40Z + type II otic fibrocyte + type II spiral ligament fibrocyte + cell + type 2 otic fibrocyte + + + + + An otic fibrocyte that underlies the spiral prominence and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph. + GOC:tfm + PMID:18353863 + + + + + type II spiral ligament fibrocyte + MP:0004488 + + + + + + + + + An otic fibrocyte that resides above the stria vasularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph. + tmeehan + 2011-07-11T03:40:42Z + type V otic fibrocyte + type V spiral ligament fibrocyte + cell + type 5 otic fibrocyte + + + + + An otic fibrocyte that resides above the stria vasularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph. + GOC:tfm + PMID:18353863 + + + + + + + + + An otic fibrocyte that is lateral to the basilar membrane and anchoris it to the lateral wall. + tmeehan + 2011-07-11T03:40:46Z + type IV otic fibrocyte + type IV spiral ligament fibrocyte + cell + type 4 otic fibrocyte + + + + + An otic fibrocyte that is lateral to the basilar membrane and anchoris it to the lateral wall. + GOC:tfm + PMID:18353863 + + + + + type IV spiral ligament fibrocyte + MP:0004490 + + + + + + + + + An otic fibrocyte that lines the otic capsule. + tmeehan + 2011-07-11T03:40:50Z + type III otic fibrocyte + type III spiral ligament fibrocyte + cell + type 3 otic fibrocyte + + + + + An otic fibrocyte that lines the otic capsule. + GOC:tfm + PMID:18353863 + + + + + type III spiral ligament fibrocyte + MP:0004489 + + + + + + + + + An otic fibrocyte that underlies the stria vascularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph. + tmeehan + 2011-07-11T03:39:27Z + type I otic fibrocyte + type I spiral ligament fibrocyte + cell + type 1 otic fibrocyte + + + + + An otic fibrocyte that underlies the stria vascularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph. + GOC:tfm + PMID:18353863 + + + + + type I spiral ligament fibrocyte + MP:0004487 + + + + + + + + + An endothelial stalk cell is a specialized endothelial cell that follows behind the tip cell of an angiogenic sprout. + tmeehan + 2011-08-16T01:49:32Z + cell + endothelial stalk cell + + + + + An endothelial stalk cell is a specialized endothelial cell that follows behind the tip cell of an angiogenic sprout. + GOC:tfm + PMID:21521739 + + + + + + + + + + + + + + + A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells. + tmeehan + 2011-08-16T02:38:01Z + cell + retinal progenitor cell + + + + + A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells. + GOC:tfm + PMID:20959166 + PMID:21148186 + + + + + + + + + + + + + + + + + + + A skeletal muscle cell that is part of the tongue. + tmeehan + 2011-08-16T03:10:02Z + cell + tongue muscle cell + + + + + A skeletal muscle cell that is part of the tongue. + GOC:tfm + PMID:18816858 + + + + + + + + + A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus. + tmeehan + 2011-08-16T03:20:53Z + H- cell + cell + H minus + + + + + A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus. + GOC:tfm + + + + + + + + + A S. pombe cell type determined by mat1-Pc and mat1-Pi on the mat1 locus. + tmeehan + 2011-08-16T03:20:58Z + cell + H plus + + + + + A S. pombe cell type determined by mat1-Pc and mat1-Pi on the mat1 locus. + GOC:tfm + + + + + + + + + + + + + + + A neuroblast derived from a neural crest cell. + tmeehan + 2011-08-22T09:24:15Z + cell + neural crest derived neuroblast + + + + + A neuroblast derived from a neural crest cell. + GOC:tfm + PMID:17407019 + + + + + + + + + + A regulatory T cell that has not encountered antigen. + tmeehan + 2011-08-25T03:17:21Z + naive regulatory T lymphocyte + naive regulatory T-cell + naive regulatory T-lymphocyte + cell + This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell. + naive regulatory T cell + + + + + A regulatory T cell that has not encountered antigen. + GOC:tfm + + + + + + + + + + A CD4-positive, CD25-positive alpha-beta regulatory T cell that has encountered antigen. + tmeehan + 2011-08-25T03:17:34Z + cell + Cell has been described as being CD45RA-positive in human, but this doesn't fit with our current definition memory T cell. + memory regulatory T cell + + + + + A CD4-positive, CD25-positive alpha-beta regulatory T cell that has encountered antigen. + GOC:tfm + PMID:21739668 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A lymphocyte found in adipose tissue that lacks lineage markers of other lymphocytes but is capable of mediating TH2 cytokine responses. This cell type is found in fat associated lymphoid clusters, proliferates in response to IL2 and produce large amounts of TH2 cytokines such as IL5, IL6 and IL13 + tmeehan + 2011-08-29T10:08:02Z + cell + natural helper lymphocyte + + + + + + true + + + + + A lymphocyte found in adipose tissue that lacks lineage markers of other lymphocytes but is capable of mediating TH2 cytokine responses. This cell type is found in fat associated lymphoid clusters, proliferates in response to IL2 and produce large amounts of TH2 cytokines such as IL5, IL6 and IL13 + GOC:tfm + PMID:20023630 + + + + + + + + + + + + + + + + + + + + A PP cell found in intestine. + tmeehan + 2011-09-27T11:59:01Z + cell + PP cell of intestine + + + + + + true + + + + + A PP cell found in intestine. + GOC:tfm + PMID:2420136 + PMID:728970 + + + + + + + + + + + + + + + + + + + + terryh + 2011-10-25T03:49:41Z + cell + kidney cortical cell + + + + + + true + + + + + + + + + + + + + + + + + + + + A CNS interneuron located in the spinal cord. + cell + Is_a interneuron, part_of UBERON:0002240. + spinal cord interneuron + + + + + + true + + + + + A CNS interneuron located in the spinal cord. + CL:CVS + + + + + + + + + + + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore. + cell + Derived from UBERON:0002342 neural crest. + iridoblast + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore. + CL:CVS + + + + + + + + + + + + + + + A non-terminally differentiated cell that differentiates into a xanthophore. + cell + xanthoblast + + + + + A non-terminally differentiated cell that differentiates into a xanthophore. + CL:CVS + + + + + + + + + + + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore. + cell + leucoblast + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore. + CL:CVS + + + + + + + + + + + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore. + cell + pigment erythroblast + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore. + CL:CVS + + + + + + + + + + + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore. + cell + cyanoblast + + + + + A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore. + CL:CVS + + + + + + + + + + Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment. + cell + ionocyte + + + + + Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment. + PMID:17555741 + PMID:19268451 + + + + + + + + + + Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. + KA cell + KA interneuron + KA neuron + Kolmer-Agduhr cell + cell + Kolmer-Agduhr neuron + + + + + Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. + PMID:18680739 + + + + + KA interneuron + PMID:15539490 + + + + + KA neuron + PMID:9634146 + + + + + + + + + + + + + + + + + + + + An auditory hair cell located in the macula that is sensitive to auditory stimuli. + cell + macular hair cell + + + + + An auditory hair cell located in the macula that is sensitive to auditory stimuli. + GO:cvs + + + + + + + + + + A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts. + cell + renal principal cell + + + + + A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts. + CL:CVS + + + + + + + + + + + A cuboidal epithelial cell of the kidney that regulates acid/base balance. + FMA:86560 + intercalated cell + cell + renal intercalated cell + + + + + A cuboidal epithelial cell of the kidney that regulates acid/base balance. + CL:CVS + + + + + + + + + A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance. + cell + renal alpha-intercalated cell + + + + + A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance. + CL:CVS + + + + + + + + + + + + + + + A ciliated epithelial cell with many cilium. + cell + multi-ciliated epithelial cell + + + + + A ciliated epithelial cell with many cilium. + CL:CVS + + + + + + + + + + + + + + + A ciliated epithelial cell with a single cilium. + cell + single ciliated epithelial cell + + + + + A ciliated epithelial cell with a single cilium. + CL:CVS + + + + + + + + + + + A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells. + cell + auditory epithelial support cell + + + + + A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells. + CL:CVS + GOC:tfm + + + + + + + + + An auditory epithelial support cell that surrounds the nerve fibers and synapses of the auditory inner hair cells. + FMA:79801 + cell + inner phalangeal cell + + + + + An auditory epithelial support cell that surrounds the nerve fibers and synapses of the auditory inner hair cells. + CL:CVS + + + + + + + + Obsolete. Use PO:0030007 from Plant Ontology instead. The apical cell is the upper cell formed after the first division of a plant zygote. + cell + replaced_by: PO:0030007 + obsolete apical cell + true + + + + + Obsolete. Use PO:0030007 from Plant Ontology instead. The apical cell is the upper cell formed after the first division of a plant zygote. + TAIR:TB + + + + + + + + Obsolete. Use PO:0002002 from Plant Ontology instead. The lower cell formed after the first division of a plant zygote. + cell + replaced_by: PO:0002002 + obsolete plant basal cell + true + + + + + Obsolete. Use PO:0002002 from Plant Ontology instead. The lower cell formed after the first division of a plant zygote. + TAIR:TB + + + + + + + + + + + + + + + + + + + A cell that secretes ghrelin, the peptide hormone that stimulates hunger. + cell + ghrelin secreting cell + + + + + A cell that secretes ghrelin, the peptide hormone that stimulates hunger. + CL:curator + + + + + + + + + Ghrelin secreting cells found in the found in the exocrine pancreas. + pancreatic E cell + cell + In mammals the endocrine pancreas is called the Islets of Langerhans. + pancreatic epsilon cell + + + + + Ghrelin secreting cells found in the found in the exocrine pancreas. + PMID:14970313 + + + + + + + + + + + + + + + + + + + + Lymphatic progenitor cells. + Ceri + 2012-01-12T04:44:34Z + cell + Usually express Prox1, or prox1b. + lymphangioblast + + + + + + true + + + + + Lymphatic progenitor cells. + CL:CVS + + + + + + + + + + Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics. + Ceri + 2012-01-12T05:01:22Z + cell + mesenchymal lymphangioblast + + + + + Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics. + PMID:15624319 + PMID:18430230 + + + + + + + + + + + + + + + + + + + + Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells. + Ceri + 2012-01-12T05:21:09Z + parachordal lymphangioblast + cell + vascular lymphangioblast + + + + + + true + + + + + Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells. + CL:CVS + + + + + + + + + + + + + + + + + + + + Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches. + PMID:14699587 + branchi motor neuron + special visceral motor neuron + branchiomotor neuron + + + + + Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches. + ZFIN:CVS + + + + + + + + + + + + + + + + + + + + + + + + + + A motor neuron that innervates a skeletal muscle. These motor neurons are all excitatory and cholinergic. + somatic motor neuron + somatomotor neuron + + + + + A motor neuron that innervates a skeletal muscle. These motor neurons are all excitatory and cholinergic. + ZFIN:CVS + + + + + + + + + + + + + + + A motor neuron that synapses to parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems. + general visceral motor neuron + Note that these neurons do not synapse directly onto muscles + visceromotor neuron + + + + + A motor neuron that synapses to parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems. + ZFIN:CVS + + + + + + + + + Multi fate stem cell that gives rise to to both hepatocytes and cholangiocytes as descendants. + hepatoblast + + + + + Multi fate stem cell that gives rise to to both hepatocytes and cholangiocytes as descendants. + GOC:CVS + PMID:18356246 + PMID:20483998 + + + + + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that has the potential to develop into an ameloblast. Located in the inner enamel epithelium, these cells elongate, their nuclei shift distally (away from the dental papilla), and their cytoplasm becomes filled with organelles needed for synthesis and secretion of enamel proteins. + haendel + 2012-06-15T01:27:01Z + cell + unsure of neural crest contribution. In VSAO we have develops_from CL:0000008 + preameloblast + + + + + Skeletogenic cell that has the potential to develop into an ameloblast. Located in the inner enamel epithelium, these cells elongate, their nuclei shift distally (away from the dental papilla), and their cytoplasm becomes filled with organelles needed for synthesis and secretion of enamel proteins. + GO_REF:0000034 + PMCID:PMC2737325 + + + + + + + + + Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). + haendel + 2012-06-15T02:51:27Z + scleroblast + cell + Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts) + skeletogenic cell + + + + + Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). + GO_REF:0000034 + + + + + scleroblast + GO_REF:0000034 + + + + + + + + + + + + + + + Skeletogenic cell that has the potential to develop into a cementoblast. + haendel + 2012-06-15T04:37:13Z + cell + precementoblast + + + + + Skeletogenic cell that has the potential to develop into a cementoblast. + GO_REF:0000034 + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a cranial neural crest cell. + haendel + 2012-06-15T05:15:11Z + cell + preodontoblast + + + + + Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a cranial neural crest cell. + GO_REF:0000034 + + + + + + + + + + + + + + + + + + + + + Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells. + haendel + 2012-06-27T08:27:35Z + cell + premigratory neural crest cell + + + + + Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells. + UBERONREF:0000002 + + + + + + + + + + + + + + + + + + + + + Cell that is part of the notochord. + haendel + 2012-06-27T08:47:31Z + cell + NOTE: TO DO, notochord development still needs work. + notochordal cell + + + + + Cell that is part of the notochord. + GO_REF:0000034 + + + + + + + + + + + + + + + Mesodermal cell that is axially located and gives rise to the cells of the notochord. + haendel + 2012-06-27T08:52:41Z + axial mesodermal cell + cell + chordamesodermal cell + + + + + Mesodermal cell that is axially located and gives rise to the cells of the notochord. + GO_REF:0000034 + + + + + + + + + Notochordal cell that is part of the outer epithelium of the notochord and surrounds the vacuolated notochord cells. + haendel + 2012-06-27T09:26:37Z + cell + notochordal sheath cell + + + + + Notochordal cell that is part of the outer epithelium of the notochord and surrounds the vacuolated notochord cells. + CL:MAH + + + + + + + + + Notochordal cell that is inner portion of the notochord and becomes vacuolated as development proceeds. + haendel + 2012-06-27T09:29:30Z + chordablast + chordoblast + cell + notochordal vacuole cell + + + + + Notochordal cell that is inner portion of the notochord and becomes vacuolated as development proceeds. + CL:MAH + + + + + chordablast + GO_REF:0000034 + + + + + chordoblast + PMID:14574572 + + + + + + + + + Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. + haendel + 2012-06-27T10:44:01Z + cell + prechondroblast + + + + + Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. + GO_REF:0000034 + + + + + + + + + + + + + + + + + + + + + + + + + + + Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells. + haendel + 2012-06-27T10:57:21Z + osteoprogenitor cell + cell + preosteoblast + + + + + Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells. + GO_REF:0000034 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Neuron that is part of the enteric nervous system. + haendel + 2012-06-28T08:20:31Z + cell + enteric neuron + + + + + Neuron that is part of the enteric nervous system. + CL:MAH + + + + + + + + + Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell. + cl + non-terminally differentiated odontoblast + + + + + Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell. + GO_REF:0000034 + PSPUB:0000170 + + + + + + + + + Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine. + cl + terminally differentiated odontoblast + + + + + Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine. + GO_REF:0000034 + + + + + + + + OBSOLETE: A cultured cell that has been passaged at least one time in culture. + + haendel + 2012-11-28T11:54:59Z + passaged cultured cell + cell + Obsoleted in July 2013 and replaced by the CLO 'cell line cell' class, as a result of CLO-OBI-CL alignment efforts. + +Covers cells actively being cultured or stored in a quiescent state for future use. + obsolete cell line cell + true + + + + + OBSOLETE: A cultured cell that has been passaged at least one time in culture. + ReO:mhb + + + + + + + + OBSOLETE: A cell line cell that is expected to be capable of replicating a limited number of times in culture before undergoing senescence. Mortal cell line cells cannot be propagated indefinitely (as immortal cell line cells can). + + haendel + 2012-11-28T11:56:20Z + finite cell line cell + cell + primary cell line cell + Obsoleted in July 2013 and replaced by the CLO 'mortal cell line cell' class, as a result of CLO-OBI-CL alignment efforts. + +Covers cells actively being cultured or stored in a quiescent state for future use. + obsolete mortal cell line cell + true + + + + + OBSOLETE: A cell line cell that is expected to be capable of replicating a limited number of times in culture before undergoing senescence. Mortal cell line cells cannot be propagated indefinitely (as immortal cell line cells can). + ReO:mhb + + + + + + + + + + + + + + + Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm. + haendel + 2012-12-30T12:43:15Z + cell + In teleosts, adaxial cells give rise to slow muscle myoblasts. + adaxial cell + + + + + Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm. + PMID:8951054 + + + + + + + + + + + + + + + + + + + + + An epidermal cell with apical microvilli or a single apical projection have synaptic associations with nerve fibres in the epidermis. + haendel + Taxon specificity not yet fully known, but are known in anuran larvae but not in adults. + Stiftchenzellen + + + + + An epidermal cell with apical microvilli or a single apical projection have synaptic associations with nerve fibres in the epidermis. + PMID:1087183 + + + + + + + + + + + + + + + + + + + + + Ciliated cell of the embryonic epidermis and functions in embryonic movements. + haendel + Taxon specificity not clear -present in embryonic anurans. + epidermal ciliary cell + + + + + Ciliated cell of the embryonic epidermis and functions in embryonic movements. + PMCID:PMC3046089 + + + + + + + + + haendel + taxon specificity not clear. Appears in early larval stages of anurans and persists after metamorphosis. + epidermal mucus secreting cell + + + + + + + + + Characteristic early embryonic cell with a bottle or flask shape that is first to migrate inwards at the blastopore during gastrulation in amphibians. + haendel + bottle cell + + + + + Characteristic early embryonic cell with a bottle or flask shape that is first to migrate inwards at the blastopore during gastrulation in amphibians. + PMID:3197630 + + + + + + + + + + + + + + + + + + + + + Secretory cell that produces a chemical mixture that triggers antipredator behavior. The substance is released only upon disruption of the epidermis. [Behavior of teleost fishes, second edition, edited by Pitcher, 1992] + haendel + club cell + alarm substance cell + + + + + Secretory cell that produces a chemical mixture that triggers antipredator behavior. The substance is released only upon disruption of the epidermis. [Behavior of teleost fishes, second edition, edited by Pitcher, 1992] + ISBN-10:0412429403 + + + + + club cell + ISBN-10:0412429403 + + + + + + + + + + + + + + + A specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg. + haendel + plug cell + micropylar cell + + + + + A specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg. + PMID:18582455 + ZFA:0005239 + + + + + + + + + + + + + + + Epidermal cell rich in mitochondria. In amphibians, appears during metamorphosis. + haendel + flask cell + + + + + Epidermal cell rich in mitochondria. In amphibians, appears during metamorphosis. + DOI:10.1007/BF00717048 + + + + + + + + + Any muscle cell in which the fibers are not organised into sarcomeres. + non-striated muscle cell + + + + + Any muscle cell in which the fibers are not organised into sarcomeres. + GOC:DOS + + + + + + + + + Any hematopoietic cell that is a precursor of some other hematopoietic cell type. + hematopoietic precursor cell + + + + + Any hematopoietic cell that is a precursor of some other hematopoietic cell type. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. + skeletal muscle fiber + + + + + A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. + GOC:tfm + ISBN:0323052908 + + + + + + + + + + + + + + + + + + + + + + + + + + + A myotube that is part of some somatic muscle. Examples include arthropod somatic muscle cells. + somatic muscle myotube + + + + + A myotube that is part of some somatic muscle. Examples include arthropod somatic muscle cells. + PMID:22274696 + PMID:8720463 + + + + + + + + + A muscle cell that is part of some somatic muscle. + somatic muscle cell + + + + + A muscle cell that is part of some somatic muscle. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + + + A somatic muscle cell that is oblquely striated. Examples include the somatic muscles of nematodes. + obliquely striated somatic muscle cell + + + + + A somatic muscle cell that is oblquely striated. Examples include the somatic muscles of nematodes. + PMID:8720463 + + + + + + + + + + + + + + + A myoblast that detemines the properties (size, shape and attachment to the epidermis) of a `somatic muscle myotube` (CL:0008003) . It develops into a somatic muscle myotube via fusion with `fusion component myoblasts` (CL:0000621). + cell + muscle founder cell + + + + + A myoblast that detemines the properties (size, shape and attachment to the epidermis) of a `somatic muscle myotube` (CL:0008003) . It develops into a somatic muscle myotube via fusion with `fusion component myoblasts` (CL:0000621). + PMID:22274696 + + + + + + + + + A muscle cell that is part of some visceral muscle + visceral muscle cell + + + + + A muscle cell that is part of some visceral muscle + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + + A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods. + striated visceral muscle cell + + + + + A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + + A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods. + transversely striated visceral muscle cell + + + + + A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods. + GOC:dos + + + + + + + + + + + + + + + + + + + A cranial motor neuron whose soma is located in the midbrain andor hindbrain and which innervates the skeletal muscles of the eye or tongue. + cranial somatomotor neuron + + + + + A cranial motor neuron whose soma is located in the midbrain andor hindbrain and which innervates the skeletal muscles of the eye or tongue. + PMID:14699587 + + + + + + + + + + + + + + + + + + + + + + + + A skeletal muscle satellite cell that divides by stem cell division. A proportion of this population undergoes symmetric stem cell division, producing two skeletal muscle satellite stem cells. The rest undergo asymmetric stem cell division - retaining their identity while budding off a daughter cell that differentiates into an adult skeletal muscle myoblast. + cell + skeletal muscle satellite stem cell + + + + + A skeletal muscle satellite cell that divides by stem cell division. A proportion of this population undergoes symmetric stem cell division, producing two skeletal muscle satellite stem cells. The rest undergo asymmetric stem cell division - retaining their identity while budding off a daughter cell that differentiates into an adult skeletal muscle myoblast. + PMID:23303905 + + + + + + + + + A skeletal muscle satellite cell that is mitotically quiescent. These cells are wedge shaped and have a large nuclear to cytoplasmic ratio with few organelles, a small nucleus and condensed interphase chromatin. Satellite cells typically remain in this state until activated following muscle damage. + cell + quiescent skeletal muscle satellite cell + + + + + A skeletal muscle satellite cell that is mitotically quiescent. These cells are wedge shaped and have a large nuclear to cytoplasmic ratio with few organelles, a small nucleus and condensed interphase chromatin. Satellite cells typically remain in this state until activated following muscle damage. + PMID:21849021 + PMID:23303905 + + + + + + + + + + + + + + + + A visceromotor motor neuron whose soma is located in the hindbrain, and which synapses to parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles of the head. + cranial visceromotor neuron + + + + + A visceromotor motor neuron whose soma is located in the hindbrain, and which synapses to parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles of the head. + PMID:14699587 + + + + + + + + + A motor neuron that is capable of directly inducing muscle contraction. + In vertebrates, all motor neurons are excitatory, but various types of inhibitory motor neurons exist in invertebrates. + excitatory motor neuron + + + + + + + + + A motor neuron that is capable of directly inhibiting muscle contraction. + In vertebrates, all motor neurons are excitatory, but various types of inhibitory motor neurons exist in invertebrates. + inhibitory motor neuron + + + + + + + + + + + + + + + A skeletal muscle cell that has become mitotically active - typically following muscle damage. + cell + activated skeletal muscle satellite cell + + + + + + + + + + + More accurately - transformation_of ? + + + + + A skeletal muscle cell that has become mitotically active - typically following muscle damage. + PMID:21849021 + PMID:23303905 + + + + + + + + + + + + + + + + + + + + + + + A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers. + myogenic precursor cell + cell + The vast majority of these cells develop from skeletal muscle satellite cells, although there are some reports of other origins. + adult skeletal muscle myoblast + + + + + A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers. + PMID:23303905 + + + + + myogenic precursor cell + PMID:23303905 + + + + + + + + + + + + + + + + + + + + A myoblast that is commited to developing into a somatic muscle. + cell + somatic muscle myoblast + + + + + + + + + + + + + + + + + + + + + A non-polarised cell precursor cell that is part of some mesenchyme, is associated with the cell matrix but is not connected to other cells and is capable of migration. + mesenchyme cell + mesenchymal cell + + + + + + + + + + + + + + + A skeletal muscle satellite cell that undergoes symmetric division to produce two adult skeleltal muscle myoblasts. + cell + skeletal muscle satellite myogenic cell + + + + + A skeletal muscle satellite cell that undergoes symmetric division to produce two adult skeleltal muscle myoblasts. + GOC:dos + PMID:23303905 + + + + + + + + + + + + + + + + + + + anterior lateral line ganglion neuron + + + + + + + + + + + + + + + + + + + A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves. + endocardial cushion cell + + + + + A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves. + PMID:18816864 + + + + + + + + + Duplicate term. + cardiac fibroblast + true + + + + + + + + + + + + + + + + + + + + An endocrine cell that is part of the pancreas. + cell + pancreatic endocrine cell + + + + + An endocrine cell that is part of the pancreas. + GOC:dos + + + + + + + + + + + + + + + + + + + A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter. + noradrenergic neuron + + + + + A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter. + GOC:dos + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the epithelium of a tracheal tube in an open tracheal system, such as that found in insects. + cell + open tracheal system tracheocyte + + + + + An epithelial cell that is part of the epithelium of a tracheal tube in an open tracheal system, such as that found in insects. + GOC:dos + + + + + + + + + + + + + + + + + + + + A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord. + spinal sensory neuron + sensory neuron of spinal nerve + + + + + + true + + + + + A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord. + GOC:nv + GOC:pr + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any cell in the compound eye, a light sensing organ composed of ommatidia. + GOC:pr + PMID:12021768 + compound eye retinal cell + + + + + + + + + Any cell participating in the inflammatory response to a foreign substance, e.g. neutrophil, macrophage. + GOC:pr + http://en.wikipedia.org/wiki/Inflammatory_response + inflammatory cell + + + + + + + + + Any cell in the midgut (middle subdivision of a digestive tract) of a larva. + GOC:pr + http://en.wikipedia.org/wiki/Insect#Midgut + larval midgut cell + + + + + + + + + + + + + + + + + + + + Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. + PMID:10702418 + cell + retinal cell + + + + + Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. + GOC:pr + + + + + + + + + Any cell in a salivary gland. + GOC:pr + http://en.wikipedia.org/wiki/Salivary_gland + salivary gland cell + + + + + + + + + + + + + + + A hair follicle matrix region cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the hair bulb to become the hair medulla cortex and hair root sheath. + keratinized cell of hair follicle + + + + + A hair follicle matrix region cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the hair bulb to become the hair medulla cortex and hair root sheath. + + + + + + + + + + + + + + + + + + + + a stromal cell that is part_of a bone marrow + GOC:cjm + bone marrow stromal cell + stromal cell of bone marrow + + + + + + + + + + + + + + + + + + + a epithelial cell that is part_of a umbilical artery + GOC:cjm + umbilical artery epithelial cell + epithelial cell of umbilical artery + + + + + + + + + + + + + + + + + + + a epithelial cell that is part_of a alveolus of lung + GOC:cjm + alveolus of lung epithelial cell + May be merged with pneumocyte in future + epithelial cell of alveolus of lung + + + + + + + + + + + + + + + + + + + a mononuclear cell that is part_of a bone marrow + GOC:cjm + bone marrow mononuclear cell + mononuclear cell of bone marrow + + + + + + + + + + + + + + + + + + + A specialized cardiomyocyte that transmit signals from the AV node to the cardiac Purkinje fibers. + AV bundle cell + atrioventricular bundle cell + + + + + A specialized cardiomyocyte that transmit signals from the AV node to the cardiac Purkinje fibers. + GOC:mtg_heart + + + + + + + + + + + + + + + + + + + cardiac blood vessel endothelial cell + + + + + + + + + + + + + + + + + + + His-Purkinje system cell + + + + + + + + + + + + + + + + + + + cardiac endothelial cell + + + + + + + + + + + + + + + + + + + + + + + + + camera type eye photoreceptor cell + camera-type eye photoreceptor cell + + + + + + + + + + + GOC:cjm + + + + + + + + + + + + + + + + + + + cerebellar stellate cell + + + + + + + + + + + + + + + + + + + a GABAergic interneuron that is part_of a cerebral cortex + cerebral cortex GABAergic interneuron + + + + + + + + + + + + + + + + + + + a neuron that is part_of a cerebral cortex + cerebral cortex neuron + + + + + + + + + light pinealocyte + type I pinealocyte + + + + + + + + + dark pinealocyte + type II pinealocyte + + + + + + + + + A highly specialized cell type exclusive to and forming neuroepithelium of the Saccus vasculosus, covering the caudal diverticulum of the infundibular recess. + Editor note: remember to link to Saccus vasculosus in next uberon release + coronet cell + + + + + A highly specialized cell type exclusive to and forming neuroepithelium of the Saccus vasculosus, covering the caudal diverticulum of the infundibular recess. + GOC:mr + PMID:17595538 + + + + + + + + + + + + + + + A cell with a flagellum surrounded by a collar of microvilli. The motion of the flagellum draws water past the microvilli, serving either a feeding or sensory function. Collar cells are found in multiple animals, including sponges, echinoderms, and cnidarians. They are also found outside animals in the choanoflagellates. Although collar cells are superficially similar, their cytoskeletal structure and functional biology are different in different groups of organisms. + cell + collar cell + + + + + A cell with a flagellum surrounded by a collar of microvilli. The motion of the flagellum draws water past the microvilli, serving either a feeding or sensory function. Collar cells are found in multiple animals, including sponges, echinoderms, and cnidarians. They are also found outside animals in the choanoflagellates. Although collar cells are superficially similar, their cytoskeletal structure and functional biology are different in different groups of organisms. + PMID:25840473 + + + + + + + + + + + + + + + + + + + cardiac glial cell + + + + + + + + + + + + + + + + + + + cell + cardiac myoblast + + + + + + + + + + + + + + + + + + + cardiac neuron + + + + + + + + + + + + + + + + + + + + A CNS interneuron located in the dorsal horn of the spinal cord. + dorsal spinal cord interneuron + dorsal horn interneuron + + + + + + true + + + + + A CNS interneuron located in the dorsal horn of the spinal cord. + GOC:nv + + + + + + + + + + + + + + + + + + + + A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement. + spinal cord motor neuron + + + + + + true + + + + + A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement. + GOC:nv + + + + + + + + + A motor neuron that is generated only on limb levels and send axons into the limb mesenchyme. + Need to MIREOT in 'spinal cord lateral column' from Uberon + lateral motor column neuron + + + + + A motor neuron that is generated only on limb levels and send axons into the limb mesenchyme. + GOC:nv + + + + + + + + + + + + + + + + + + + + + A neurosecretory neuron residing mainly in the hypothalamic supraoptic and paraventricular nuclei and in a number of smaller accessory cell groups between these two nuclei, that secretes the hormones oxytocin and vasopressin. + magnocellular neuron + magnocellular neurosecretory cell (duplicate class) + + + + + A neurosecretory neuron residing mainly in the hypothalamic supraoptic and paraventricular nuclei and in a number of smaller accessory cell groups between these two nuclei, that secretes the hormones oxytocin and vasopressin. + GOC:nv + MP:0009467 + + + + + + + + + A vetebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. + lens fibre cell + lens fiber cell + + + + + A vetebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. + GO:0070307 + GOC:nv + + + + + + + + + + + + + + + + + + An interneuron that uses GABA as a vesicular neurotransmitter. + GABAergic interneuron + + + + + An interneuron that uses GABA as a vesicular neurotransmitter. + GOC:nv + + + + + + + + + + + + + + + An inhibitory GABAergic interneuron found in the cerebellar cortex. + Lugaro cell + + + + + An inhibitory GABAergic interneuron found in the cerebellar cortex. + GOC:nv + + + + + + + + + + + + + + + + + + + + A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites. + paraxial mesoderm cell + somitic mesoderm cell + presomitic mesoderm cell + paraxial cell + + + + + A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites. + GOC:NV + PMID:11687492 + + + + + + + + + A hemocyte derived from head mesoderm, which enters the hemolymph as acirculating cell. + embryonic hemocyte + + + + + A hemocyte derived from head mesoderm, which enters the hemolymph as acirculating cell. + GOC:NV + PMID:17967061 + + + + + + + + + A plasmatocyte derived from head mesoderm. + embryonic plasmatocyte + + + + + A plasmatocyte derived from head mesoderm. + GOC:NV + PMID:17967061 + + + + + + + + + A cell derived from the mesoderm that is found at the periphery of the embryo. + lateral mesodermal cell + + + + + A cell derived from the mesoderm that is found at the periphery of the embryo. + GOC:NV + PMID:9169844 + + + + + + + + + A cell derived from the mesoderm that is located between the paraxial mesoderm and the lateral plate. + intermediate mesodermal cell + + + + + A cell derived from the mesoderm that is located between the paraxial mesoderm and the lateral plate. + GOC:NV + ISBN:978-0-87969-707-5 + + + + + + + + + + A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells. + cell + neural crest cell + + + + + A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells. + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0002-9900-7880 + + + + + + + + + Neuron that secretes the neurotransmitter galanin. + galanergic neuron + + + + + Neuron that secretes the neurotransmitter galanin. + GOC:NV + PMID:23159249 + ZFIN:CVS + ZFIN:YB + + + + + + + + + + + + + + + + + + + + Cells of the uterine chorion that acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer. + chorionic trophoblast cell + + + + + Cells of the uterine chorion that acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer. + GOC:NV + + + + + + + + + Parasympathetic neurons are part of the parasympathetic nervous sysem and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic. + parasympathetic neuron + + + + + Parasympathetic neurons are part of the parasympathetic nervous sysem and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic. + GOC:NV + isbn:0080923437 + + + + + + + + + Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides. + sympathetic neuron + + + + + Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides. + GOC:NV + isbn:0080923437 + + + + + + + + + + + + + + + A type of interneuron in the retinal inner nuclear layer which +carries information from the inner plexiform layer and the outer +plexiform layer. + Need to MIREOT retinal inner nuclear layer (part of) + interplexiform cell + + + + + A type of interneuron in the retinal inner nuclear layer which +carries information from the inner plexiform layer and the outer +plexiform layer. + GOC:NV + PMID:12771169 + + + + + + + + + + + + + + + + + + + A type of interneuron in the retinal inner nuclear layer which +carries information from the inner plexiform layer and the outer +plexiform layer, using dopamine. + This type of cell is found in Danio rerio. + dopamanergic interplexiform cell + + + + + A type of interneuron in the retinal inner nuclear layer which +carries information from the inner plexiform layer and the outer +plexiform layer, using dopamine. + GOC:NV + PMID:12771169 + + + + + + + + + + + + + + + + + + + A type of interneuron in the retinal inner nuclear layer which +carries information from the inner plexiform layer and the outer +plexiform layer using GABA. + This type of cell is found in many mammals. + GABAnergic interplexiform cell + + + + + A type of interneuron in the retinal inner nuclear layer which +carries information from the inner plexiform layer and the outer +plexiform layer using GABA. + GOC:NV + PMID:12771169 + + + + + + + + + + + + + + + Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer. + + Muller glia + Müller cell + Muller cell + + + + + Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer. + + GOC:NV + PMID:21911394 + + + + + + + + + + + + + + + + + + + + + + + + + Epithelial cell that is part of the colon epithelium. + colonic epithelial cell + colon epithelial cell + + + + + Epithelial cell that is part of the colon epithelium. + GOC:NV + + + + + + + + + + + + + + + + + + + + A neuron that releases hypocretin as a neurotransmitter. + orexin + hypocretin-secreting neuron + + + + + A neuron that releases hypocretin as a neurotransmitter. + GOC:NV + PMID:23848055 + + + + + + + + + + + + + + + + + + + + Neuron that secretes histamine. + histaminergic neuron + + + + + Neuron that secretes histamine. + GOC:NV + PMID:22677810 + + + + + + + + + + + + + + + + + + + + Neuroendocrine cells that are born in the nasal placode during embryonic development and migrate through the nose and forebrain to the hypothalamus, where they regulate reproduction. + GnRH neuron + GnRH-secreting neuron + gonadotropin releasing neuron + + + + + Neuroendocrine cells that are born in the nasal placode during embryonic development and migrate through the nose and forebrain to the hypothalamus, where they regulate reproduction. + GOC:NV + PMID:21828096 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Neurons part of the hypothalamic supraoptic and paraventricular nuclei that secrete the hormones, oxytocin and vasopressin into the systemic circulation from the posterior pituitary gland. + magnocellular neurosecretory cell + + + + + Neurons part of the hypothalamic supraoptic and paraventricular nuclei that secrete the hormones, oxytocin and vasopressin into the systemic circulation from the posterior pituitary gland. + GOC:NV + PMID:10711808 + + + + + + + + + + + + + + + + + + + + Neuron found in the spriral ganglion. + spiral ganglion neuron + + + + + Neuron found in the spriral ganglion. + GOC:NV + + + + + + + + + + + + + + + + + + + + + + + + + + + A segmented neutrophilic cell of the bone marrow reserve pool that expresses CD11b (integrin alpha-M) and high levels of CD16 (low affinity immunoglobulin gamma Fc region receptor III) on its cell surface. + segmented neutrophil of bone marrow + + + + + A segmented neutrophilic cell of the bone marrow reserve pool that expresses CD11b (integrin alpha-M) and high levels of CD16 (low affinity immunoglobulin gamma Fc region receptor III) on its cell surface. + PMID:11138622 + PMID:15514007 + + + + + + + + + + + + + + + + + + + + A cell that, by division or terminal differentiation, can give rise to other cell types. + Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell. + precursor cell + + + + + A cell that, by division or terminal differentiation, can give rise to other cell types. + GOC:dos + + + + + + + + + + + + + + + + + + + + An astrocyte of the forebrain. + tberardini + forebrain astrocyte + cell + astrocyte of the forebrain + + + + + + true + + + + + + + + + + + + + + + + + + + + A CNS neuron of the forebrain. + tberardini + forebrain neuron + cell + neuron of the forebrain + + + + + + true + + + + + + + + + + + + + + + + + + + + forebrain radial glial cell + + + + + + + + + Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs. + PMID:14699587 + + cranial motoneuron + cranial motor neuron + + + + + Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs. + ZFIN:CVS + + + + + + + + + + + + + + + + + + + + retrotrapezoid nucleus neuron + + + + + + + + + + + + + + + + + + + mesonephric nephron tubule epithelial cell + + + + + + + + + + + + + + + + + + + forebrain neuroblast + + + + + + + + + + + + + + + + + + + lateral line nerve glial cell + + + + + + + + + + + + + + + + + + + spinal cord radial glial cell + + + + + + + + + cell + stretch receptor cell + + + + + + + + + cell + stratified keratinized epithelial stem cell + + + + + + + + + cell + stratified non keratinized epithelial stem cell + + + + + + + + + + + + + + + + + + + pronephric nephron tubule epithelial cell + + + + + + + + + + + + + + + + + + + metanephric nephron tubule epithelial cell + + + + + + + + + + + + + + + + + + + lung goblet cell + + + + + + + + + + + + + + + + + + + heart valve cell + + + + + + + + + + + + + + + A specialized epithelial secretory cell that moves chloride ions and water across the tubule epithelium. + FBbt:00005797 + Malpighian tubule Type II cell + Malpighian tubule stellate cell + + + + + A specialized epithelial secretory cell that moves chloride ions and water across the tubule epithelium. + GO:0061330 + + + + + Malpighian tubule Type II cell + FBbt:00005797 + + + + + + + + + + + + + + + + + + + malpighian tubule tip cell + + + + + + + + + A rod-like cell in the inner ear, having their heads joined and their bases on the basilar membrane widely separated so as to form a spiral tunnel known as the tunnel of Corti. + FMA:75722 + pillar cell of cochlea + pillar cell of corti + rod cell of Corti + cell + cochlear pillar cell + pillar cell + + + + + A rod-like cell in the inner ear, having their heads joined and their bases on the basilar membrane widely separated so as to form a spiral tunnel known as the tunnel of Corti. + GOC:tfm + PMID:12417662 + + + + + + + + + + + + + + + + + + + growth plate cartilage chondrocyte + + + + + + + + + + + + + + + + + + + stomach neuroendocrine cell + + + + + + + + + + + + + + + + + + + lung neuroendocrine cell + + + + + + + + + + + + + + + + + + + posterior lateral line nerve glial cell + + + + + + + + + + + + + + + + + + + anterior lateral line nerve glial cell + + + + + + + + + + + + + + + + + + + posterior lateral line ganglion neuron + + + + + + + + + + + + + + + + + + + lung ciliated cell + + + + + + + + + + + + + + + + + + + lung secretory cell + + + + + + + + + trophectoderm cell + cell + trophectodermal cell + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the small intestine. + FMA:15050 + non-striated muscle fiber of small intestine + cell + smooth muscle cell of small intestine + + + + + + true + + + + + A smooth muscle cell that is part of the small intestine. + GOC:tfm + + + + + non-striated muscle fiber of small intestine + FMA:15050 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the duodenum. + FMA:15058 + non-striated muscle fiber of duodenum + cell + smooth muscle fiber of duodenum + + + + + + true + + + + + A smooth muscle cell that is part of the duodenum. + GOC:tfm + + + + + non-striated muscle fiber of duodenum + FMA:15058 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the jejunum. + FMA:15062 + non-striated muscle fiber of jejunum + cell + smooth muscle fiber of jejunum + + + + + + true + + + + + A smooth muscle cell that is part of the jejunum. + GOC:tfm + + + + + non-striated muscle fiber of jejunum + FMA:15062 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the ileum. + FMA:15066 + non-striated muscle fiber of ileum + cell + smooth muscle fiber of ileum + + + + + + true + + + + + A smooth muscle cell that is part of the ileum. + GOC:tfm + + + + + non-striated muscle fiber of ileum + FMA:15066 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the large intestine. + FMA:15653 + non-striated muscle fiber of large intestine + cell + smooth muscle cell of large intestine + + + + + + true + + + + + A smooth muscle cell that is part of the large intestine. + GOC:tfm + + + + + non-striated muscle fiber of large intestine + FMA:15653 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the colon. + FMA:15663 + non-striated muscle fiber of colon + cell + smooth muscle cell of colon + + + + + + true + + + + + A smooth muscle cell that is part of the colon. + GOC:tfm + + + + + non-striated muscle fiber of colon + FMA:15663 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the cecum. + FMA:15681 + non-striated muscle fiber of cecum + smooth muscle fiber of cecum + cell + smooth muscle cell of cecum + + + + + + true + + + + + A smooth muscle cell that is part of the cecum. + GOC:tfm + + + + + non-striated muscle fiber of cecum + FMA:15681 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the ascending colon. + FMA:17518 + non-striated muscle fiber of ascending colon + cell + smooth muscle fiber of ascending colon + + + + + + true + + + + + A smooth muscle cell that is part of the ascending colon. + GOC:tfm + + + + + non-striated muscle fiber of ascending colon + FMA:17518 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the transverse colon. + FMA:17519 + non-striated muscle fiber of transverse colon + cell + smooth muscle fiber of transverse colon + + + + + + true + + + + + A smooth muscle cell that is part of the transverse colon. + GOC:tfm + + + + + non-striated muscle fiber of transverse colon + FMA:17519 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the descending colon. + FMA:17520 + non-striated muscle fiber of descending colon + cell + smooth muscle fiber of descending colon + + + + + + true + + + + + A smooth muscle cell that is part of the descending colon. + GOC:tfm + + + + + non-striated muscle fiber of descending colon + FMA:17520 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the sigmoid colon. + FMA:17521 + non-striated muscle fiber of sigmoid colon + cell + smooth muscle cell of sigmoid colon + + + + + + true + + + + + A smooth muscle cell that is part of the sigmoid colon. + GOC:tfm + + + + + non-striated muscle fiber of sigmoid colon + FMA:17521 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the rectum. + FMA:17522 + non-striated muscle fiber of rectum + smooth muscle fiber of rectum + cell + smooth muscle cell of rectum + + + + + + true + + + + + A smooth muscle cell that is part of the rectum. + GOC:tfm + + + + + non-striated muscle fiber of rectum + FMA:17522 + + + + + + + + + A muscle cell that is part of the anterior internodal tract. + FMA:223276 + cell + myocyte of anterior internodal tract + + + + + A muscle cell that is part of the anterior internodal tract. + GOC:tfm + + + + + + + + + A muscle cell that is part of the atrial branch of anterior internodal tract. + FMA:223277 + cell + myocyte of atrial branch of anterior internodal tract + + + + + A muscle cell that is part of the atrial branch of anterior internodal tract. + GOC:tfm + + + + + + + + + A muscle cell that is part of the atrial septal branch of anterior internodal tract. + FMA:223278 + cell + myocyte of atrial septal branch of anterior internodal tract + + + + + A muscle cell that is part of the atrial septal branch of anterior internodal tract. + GOC:tfm + + + + + + + + + A muscle cell that is part of the middle internodal tract. + FMA:223279 + cell + myocyte of middle internodal tract + + + + + A muscle cell that is part of the middle internodal tract. + GOC:tfm + + + + + + + + + A muscle cell that is part of the posterior internodal tract. + FMA:223280 + cell + myocyte of posterior internodal tract + + + + + A muscle cell that is part of the posterior internodal tract. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the urethra. + FMA:256165 + cell + epithelial cell of urethra + + + + + + true + + + + + An epithelial cell that is part of the urethra. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the dura mater. + FMA:256516 + squamous mesothelial cell of dura mater + cell + mesothelial cell of dura mater + + + + + + true + + + + + A mesothelial cell that is part of the dura mater. + GOC:tfm + + + + + squamous mesothelial cell of dura mater + FMA:256516 + + + + + + + + + + + + + + + A fibroblast that is part of the connective tissue of prostate. + FMA:261271 + cell + fibroblast of connective tissue of prostate + + + + + A fibroblast that is part of the connective tissue of prostate. + GOC:tfm + + + + + + + + + + + + + + + A fibroblast that is part of the outer membrane of prostatic capsule. + FMA:261273 + cell + fibroblast of outer membrane of prostatic capsule + + + + + A fibroblast that is part of the outer membrane of prostatic capsule. + GOC:tfm + + + + + + + + + + + + + + + A fibroblast that is part of the subepithelial connective tissue of prostatic gland. + FMA:261275 + cell + fibroblast of subepithelial connective tissue of prostatic gland + + + + + A fibroblast that is part of the subepithelial connective tissue of prostatic gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the papillary layer of dermis. + FMA:261277 + cell + fibroblast of papillary layer of dermis + + + + + + true + + + + + A fibroblast that is part of the papillary layer of dermis. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the areolar connective tissue. + FMA:261279 + cell + fibroblast of areolar connective tissue + + + + + + true + + + + + A fibroblast that is part of the areolar connective tissue. + GOC:tfm + + + + + + + + + + + + + + + A fibroblast that is part of the connective tissue of nonglandular part of prostate. + FMA:261281 + cell + fibroblast of connective tissue of nonglandular part of prostate + + + + + A fibroblast that is part of the connective tissue of nonglandular part of prostate. + GOC:tfm + + + + + + + + + + + + + + + A fibroblast that is part of the connective tissue of glandular part of prostate. + FMA:261283 + cell + fibroblast of connective tissue of glandular part of prostate + + + + + A fibroblast that is part of the connective tissue of glandular part of prostate. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the tunica adventitia of artery. + FMA:261285 + cell + fibroblast of tunica adventitia of artery + + + + + + true + + + + + A fibroblast that is part of the tunica adventitia of artery. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A fibroblast that is part of the dense regular elastic tissue. + FMA:261287 + cell + fibroblast of dense regular elastic tissue + + + + + A fibroblast that is part of the dense regular elastic tissue. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A fibrocyte that is part of the adventitia of ureter. + FMA:261289 + cell + fibrocyte of adventitia of ureter + + + + + + true + + + + + A fibrocyte that is part of the adventitia of ureter. + GOC:tfm + + + + + + + + + + + + + + + A fat cell that is part of the epicardial fat. + FMA:261293 + adipocyte of epicardial fat + epicardial fat cell + cell + epicardial adipocyte + + + + + A fat cell that is part of the epicardial fat. + GOC:tfm + + + + + adipocyte of epicardial fat + FMA:261293 + + + + + epicardial fat cell + FMA:261293 + + + + + + + + + + + + + + + + + + + + + + + + + + A fat cell that is part of the epicardial fat of right ventricle. + FMA:261297 + epicardial adipocyte of right ventricle + epicardial fat cell of right ventricle + cell + adipocyte of epicardial fat of right ventricle + + + + + + true + + + + + A fat cell that is part of the epicardial fat of right ventricle. + GOC:tfm + + + + + epicardial adipocyte of right ventricle + FMA:261297 + + + + + epicardial fat cell of right ventricle + FMA:261297 + + + + + + + + + + + + + + + + + + + + + + + + + + A fat cell that is part of the epicardial fat of left ventricle. + FMA:261300 + epicardial adipocyte of left ventricle + epicardial fat cell of left ventricle + cell + adipocyte of epicardial fat of left ventricle + + + + + + true + + + + + A fat cell that is part of the epicardial fat of left ventricle. + GOC:tfm + + + + + epicardial adipocyte of left ventricle + FMA:261300 + + + + + epicardial fat cell of left ventricle + FMA:261300 + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of bronchus. + FMA:263032 + goblet cell of epithelium of bronchus + cell + bronchial goblet cell + + + + + A goblet cell that is part of the epithelium of bronchus. + GOC:tfm + + + + + goblet cell of epithelium of bronchus + FMA:263032 + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of stomach. + FMA:263035 + goblet cell of epithelium of stomach + cell + gastric goblet cell + + + + + A goblet cell that is part of the epithelium of stomach. + GOC:tfm + + + + + goblet cell of epithelium of stomach + FMA:263035 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of gastric cardiac gland. + FMA:263038 + goblet cell of epithelium of gastric cardiac gland + cell + gastric cardiac gland goblet cell + + + + + A goblet cell that is part of the epithelium of gastric cardiac gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of principal gastric gland. + FMA:263040 + goblet cell of epithelium of principal gastric gland + cell + principal gastric gland goblet cell + + + + + A goblet cell that is part of the epithelium of principal gastric gland. + GOC:tfm + + + + + + + + OBSOLETE: A goblet cell that is part of the epithelium of small intestine. + CL:1000495 + FMA:263042 + cell + obsolete goblet cell of epithelium of small intestine + true + + + + + OBSOLETE: A goblet cell that is part of the epithelium of small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of intestinal villus. + FMA:263046 + goblet cell of epithelium of intestinal villus + cell + intestinal villus goblet cell + + + + + A goblet cell that is part of the epithelium of intestinal villus. + GOC:tfm + + + + + + + + A goblet cell that is part of the epithelium of crypt of lieberkuhn of small intestine. + FMA:263050 + cell + obsolete small intestine crypt goblet cell + true + + + + + A goblet cell that is part of the epithelium of crypt of lieberkuhn of small intestine. + GOC:tfm + + + + + + + + OBSOLETE: A goblet cell that is part of the epithelium proper of small intestine. + FMA:263052 + cell + obsolete goblet cell of epithelium proper of small intestine + true + + + + + OBSOLETE: A goblet cell that is part of the epithelium proper of small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of large intestine. + FMA:263054 + goblet cell of epithelium of large intestine + cell + large intestine goblet cell + + + + + A goblet cell that is part of the epithelium of large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of crypt of lieberkuhn of large intestine. + FMA:263056 + cell + large intestine crypt goblet cell + + + + + A goblet cell that is part of the epithelium of crypt of lieberkuhn of large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of pancreatic duct. + FMA:263058 + goblet cell of epithelium of pancreatic duct + cell + pancreatic goblet cell + + + + + A goblet cell that is part of the epithelium of pancreatic duct. + GOC:tfm + + + + + goblet cell of epithelium of pancreatic duct + FMA:263058 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of pyloric gland. + FMA:263061 + goblet cell of epithelium of pyloric gland + cell + pylroric gastric gland goblet cell + + + + + A goblet cell that is part of the epithelium of pyloric gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium proper of duodenum. + FMA:263063 + goblet cell of epithelium proper of duodenum + cell + duodenal goblet cell + + + + + A goblet cell that is part of the epithelium proper of duodenum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium proper of jejunum. + FMA:263065 + goblet cell of epithelium proper of jejunum + cell + jejunal goblet cell + + + + + A goblet cell that is part of the epithelium proper of jejunum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium proper of ileum. + FMA:263067 + goblet cell of epithelium proper of ileum + cell + ileal goblet cell + + + + + A goblet cell that is part of the epithelium proper of ileum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium proper of appendix. + FMA:263069 + goblet cell of epithelium proper of appendix + cell + appendix goblet cell + + + + + A goblet cell that is part of the epithelium proper of appendix. + GOC:tfm + + + + + + + + OBSOLETE: A goblet cell that is part of the epithelium proper of large intestine. + FMA:263071 + cell + obsolete goblet cell of epithelium proper of large intestine + true + + + + + OBSOLETE: A goblet cell that is part of the epithelium proper of large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the epithelium of trachea. + FMA:263075 + goblet cell of epithelium of trachea + cell + tracheal goblet cell + + + + + A goblet cell that is part of the epithelium of trachea. + GOC:tfm + + + + + goblet cell of epithelium of trachea + FMA:263075 + + + + + + + + + + + + + + + + + + + + A serous secreting cell that is part of the epithelium of trachea. + FMA:263078 + cell + serous cell of epithelium of trachea + + + + + + true + + + + + A serous secreting cell that is part of the epithelium of trachea. + GOC:tfm + + + + + + + + + + + + + + + + + + + A serous secreting cell that is part of the epithelium of bronchus. + FMA:263080 + cell + serous cell of epithelium of bronchus + + + + + A serous secreting cell that is part of the epithelium of bronchus. + GOC:tfm + + + + + + + + + + + + + + + + + + + A serous secreting cell that is part of the epithelium of terminal bronchiole. + FMA:263082 + cell + serous cell of epithelium of terminal bronchiole + + + + + A serous secreting cell that is part of the epithelium of terminal bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + A serous secreting cell that is part of the epithelium of bronchiole. + FMA:263084 + cell + serous cell of epithelium of lobular bronchiole + + + + + A serous secreting cell that is part of the epithelium of bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An enterocyte that is part of the epithelium of small intestine. + FMA:263086 + cell + enterocyte of epithelium of small intestine + + + + + + true + + + + + An enterocyte that is part of the epithelium of small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + An enterocyte that is part of the epithelium of intestinal villus. + FMA:263088 + cell + enterocyte of epithelium of intestinal villus + + + + + + true + + + + + An enterocyte that is part of the epithelium of intestinal villus. + GOC:tfm + + + + + + + + + + + + + + + + + + + An enterocyte that is part of the epithelium of duodenal gland. + FMA:263092 + cell + enterocyte of epithelium of duodenal gland + + + + + An enterocyte that is part of the epithelium of duodenal gland. + GOC:tfm + + + + + + + + + + + + + + + An enterocyte that is part of the epithelium of crypt of lieberkuhn of small intestine. + FMA:263094 + cell + enterocyte of epithelium of crypt of Lieberkuhn of small intestine + + + + + An enterocyte that is part of the epithelium of crypt of lieberkuhn of small intestine. + GOC:tfm + + + + + + + + + An enterocyte that is part of the epithelium proper of small intestine. + FMA:263096 + cell + enterocyte of epithelium proper of small intestine + + + + + An enterocyte that is part of the epithelium proper of small intestine. + GOC:tfm + + + + + + + + + + + + + + + An enterocyte that is part of the epithelium proper of duodenum. + FMA:263098 + cell + enterocyte of epithelium proper of duodenum + + + + + An enterocyte that is part of the epithelium proper of duodenum. + GOC:tfm + + + + + + + + + An enterocyte that is part of the epithelium proper of jejunum. + FMA:263100 + cell + enterocyte of epithelium proper of jejunum + + + + + An enterocyte that is part of the epithelium proper of jejunum. + GOC:tfm + + + + + + + + + An enterocyte that is part of the epithelium proper of ileum. + FMA:263102 + cell + enterocyte of epithelium proper of ileum + + + + + An enterocyte that is part of the epithelium proper of ileum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A paneth cell that is part of the epithelium of small intestine. + FMA:263104 + cell + paneth cell of epithelium of small intestine + + + + + + true + + + + + + true + + + + + A paneth cell that is part of the epithelium of small intestine. + GOC:tfm + + + + + + + + + A Paneth cell that is part of the epithelium proper of small intestine. + FMA:263106 + cell + paneth cell of epithelium proper of small intestine + + + + + A Paneth cell that is part of the epithelium proper of small intestine. + GOC:tfm + + + + + + + + + + + + + + + A Paneth cell that is part of the epithelium of crypt of lieberkuhn of small intestine. + FMA:263108 + cell + paneth cell of epithelium of crypt of Lieberkuhn of small intestine + + + + + A Paneth cell that is part of the epithelium of crypt of lieberkuhn of small intestine. + GOC:tfm + + + + + + + + + MERGED DEFINITION: TARGET DEFINITION: A columnar cell of the colon that is part of the epithelium proper of large intestine. SOURCE DEFINITION: An enterocyte that is part of the epithelium proper of large intestine. + CL:1000336 + FMA:263090 + FMA:263112 + enterocyte of epithelium proper of large intestine + cell + vacuolar absorptive cell of epithelium proper of large intestine + + + + + MERGED DEFINITION: TARGET DEFINITION: A columnar cell of the colon that is part of the epithelium proper of large intestine. SOURCE DEFINITION: An enterocyte that is part of the epithelium proper of large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A columnar cell of the colon that is part of the colonic epithelium. + FMA:263114 + cell + vacuolar absorptive cell of epithelium of colon + + + + + + true + + + + + A columnar cell of the colon that is part of the colonic epithelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell that is part of the epithelium of trachea. + FMA:263118 + cell + basal cell of epithelium of trachea + + + + + + true + + + + + A basal cell that is part of the epithelium of trachea. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell found in the bronchus epithelium. + CL:0002331 + FMA:263120 + basal cell of bronchus + cell + basal cell of epithelium of bronchus + + + + + A basal cell found in the bronchus epithelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell that is part of the epithelium of terminal bronchiole. + FMA:263122 + cell + basal cell of epithelium of terminal bronchiole + + + + + + true + + + + + A basal cell that is part of the epithelium of terminal bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell that is part of the epithelium of respiratory bronchiole. + FMA:263124 + cell + basal cell of epithelium of respiratory bronchiole + + + + + + true + + + + + A basal cell that is part of the epithelium of respiratory bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell that is part of the epithelium of bronchiole. + FMA:263126 + cell + basal cell of epithelium of lobular bronchiole + + + + + + true + + + + + A basal cell that is part of the epithelium of bronchiole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium of small intestine. + FMA:263128 + cell + microfold cell of epithelium of small intestine + + + + + + true + + + + + A M cell that is part of the epithelium of small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium of intestinal villus. + FMA:263130 + cell + microfold cell of epithelium of intestinal villus + + + + + A M cell that is part of the epithelium of intestinal villus. + GOC:tfm + + + + + + + + + A M cell that is part of the epithelium proper of small intestine. + FMA:263132 + cell + microfold cell of epithelium proper of small intestine + + + + + A M cell that is part of the epithelium proper of small intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium proper of duodenum. + FMA:263134 + cell + microfold cell of epithelium proper of duodenum + + + + + A M cell that is part of the epithelium proper of duodenum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium proper of jejunum. + FMA:263136 + cell + microfold cell of epithelium proper of jejunum + + + + + A M cell that is part of the epithelium proper of jejunum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium proper of ileum. + FMA:263138 + cell + microfold cell of epithelium proper of ileum + + + + + A M cell that is part of the epithelium proper of ileum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium proper of appendix. + FMA:263140 + cell + microfold cell of epithelium proper of appendix + + + + + A M cell that is part of the epithelium proper of appendix. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A M cell that is part of the epithelium proper of large intestine. + FMA:263142 + cell + microfold cell of epithelium proper of large intestine + + + + + A M cell that is part of the epithelium proper of large intestine. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the interatrial septum. + FMA:263152 + cell + transitional myocyte of interatrial septum + + + + + + true + + + + + A transitional myocyte that is part of the interatrial septum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the interventricular septum. + FMA:263154 + cell + transitional myocyte of interventricular septum + + + + + + true + + + + + A transitional myocyte that is part of the interventricular septum. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the atrial branch of anterior internodal tract. + FMA:263156 + cell + transitional myocyte of atrial branch of anterior internodal tract + + + + + A transitional myocyte that is part of the atrial branch of anterior internodal tract. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the anterior internodal tract. + FMA:263158 + cell + transitional myocyte of anterior internodal tract + + + + + A transitional myocyte that is part of the anterior internodal tract. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the atrial septal branch of anterior internodal tract. + FMA:263160 + cell + transitional myocyte of atrial septal branch of anterior internodal tract + + + + + A transitional myocyte that is part of the atrial septal branch of anterior internodal tract. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the middle internodal tract. + FMA:263162 + cell + transitional myocyte of middle internodal tract + + + + + A transitional myocyte that is part of the middle internodal tract. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the posterior internodal tract. + FMA:263164 + cell + transitional myocyte of posterior internodal tract + + + + + A transitional myocyte that is part of the posterior internodal tract. + GOC:tfm + + + + + + + + + + + + + + + A transitional myocyte that is part of the anterior division of left branch of atrioventricular bundle. + FMA:263166 + cell + transitional myocyte of anterior division of left branch of atrioventricular bundle + + + + + A transitional myocyte that is part of the anterior division of left branch of atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + A transitional myocyte that is part of the septal division of left branch of atrioventricular bundle. + FMA:263168 + cell + transitional myocyte of septal division of left branch of atrioventricular bundle + + + + + A transitional myocyte that is part of the septal division of left branch of atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the left branch of atrioventricular bundle. + FMA:263170 + cell + transitional myocyte of left branch of atrioventricular bundle + + + + + A transitional myocyte that is part of the left branch of atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the right branch of atrioventricular bundle. + FMA:263172 + cell + transitional myocyte of right branch of atrioventricular bundle + + + + + A transitional myocyte that is part of the right branch of atrioventricular bundle. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the atrial part of atrioventricular bundle. + FMA:263174 + cell + transitional myocyte of atrial part of atrioventricular bundle + + + + + A transitional myocyte that is part of the atrial part of atrioventricular bundle. + GOC:tfm + + + + + + + + + A transitional myocyte that is part of the ventricular part of atrioventricular bundle. + FMA:263176 + cell + transitional myocyte of ventricular part of atrioventricular bundle + + + + + A transitional myocyte that is part of the ventricular part of atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + A transitional myocyte that is part of the posterior division of left branch of atrioventricular bundle. + FMA:263178 + cell + transitional myocyte of posterior division of left branch of atrioventricular bundle + + + + + A transitional myocyte that is part of the posterior division of left branch of atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + A myocardial endocrine cell that is part of the septal division of left branch of atrioventricular bundle. + FMA:263180 + cell + myocardial endocrine cell of septal division of left branch of atrioventricular bundle + + + + + A myocardial endocrine cell that is part of the septal division of left branch of atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A Purkinje myocyte that is part of the interventricular septum. + FMA:263182 + cell + Purkinje myocyte of interventricular septum + + + + + + true + + + + + A Purkinje myocyte that is part of the interventricular septum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A Feyrter cell that is part of the epithelium of trachea. + FMA:263184 + cell + dense-core granulated cell of epithelium of trachea + + + + + + true + + + + + + true + + + + + A Feyrter cell that is part of the epithelium of trachea. + GOC:tfm + + + + + + + + + + + + + + + + + + + A type I vestibular sensory cell that is part of the stato-acoustic epithelium. + FMA:263186 + cell + type 1 vestibular sensory cell of stato-acoustic epithelium + + + + + A type I vestibular sensory cell that is part of the stato-acoustic epithelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth. + FMA:263188 + cell + type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth + + + + + A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth. + FMA:263190 + cell + type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth + + + + + A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth. + GOC:tfm + + + + + + + + + + + + + + + + + + + A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth. + FMA:263192 + cell + type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth + + + + + A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth. + GOC:tfm + + + + + + + + + + + + + + + + + + + A type II vestibular sensory cell that is part of the stato-acoustic epithelium. + FMA:263194 + cell + type 2 vestibular sensory cell of stato-acoustic epithelium + + + + + A type II vestibular sensory cell that is part of the stato-acoustic epithelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth. + FMA:263196 + cell + type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth + + + + + A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth. + FMA:263198 + cell + type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth + + + + + A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth. + GOC:tfm + + + + + + + + + + + + + + + + + + + A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth. + FMA:263200 + cell + type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth + + + + + A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A melanocyte that is part of the eyelid. + FMA:59175 + eyelid melanocyte + sebaceous gland of wolff + cell + melanocyte of eyelid + + + + + + true + + + + + A melanocyte that is part of the eyelid. + GOC:tfm + + + + + eyelid melanocyte + FMA:59175 + + + + + sebaceous gland of wolff + FMA:59175 + + + + + + + + + A myoepithelial cell that is part of the intralobular part of terminal lactiferous duct. + FMA:62158 + cell + myoepithelial cell of intralobular lactiferous duct + + + + + A myoepithelial cell that is part of the intralobular part of terminal lactiferous duct. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the venous sinus of red pulp of spleen. + FMA:62817 + cell + todo - add logical definition to UBERON:0009967 + endothelial cell of venous sinus of red pulp of spleen + + + + + An endothelial cell that is part of the venous sinus of red pulp of spleen. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the hepatic sinusoid. + FMA:62911 + endotheliocyte of hepatic sinusoid + cell + endothelial cell of hepatic sinusoid + + + + + + true + + + + + An endothelial cell that is part of the hepatic sinusoid. + GOC:tfm + + + + + endotheliocyte of hepatic sinusoid + FMA:62911 + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the appendix. + FMA:63602 + columnar epitheliocyte of appendix + epithelial cell of vermiform appendix + cell + epithelial cell of appendix + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the appendix. + GOC:tfm + + + + + columnar epitheliocyte of appendix + FMA:63602 + + + + + epithelial cell of vermiform appendix + FMA:63602 + + + + + + + + + + + + + + + + + + + + A muscle cell that is part of the sinoatrial node. + FMA:67102 + SA nodal myocyte + SA node cardiac muscle cell + myocyte of sinoatrial node + sinoatrial node cell + sinoatrial node myocyte + sinuatrial node myocyte + cell + myocyte of sinoatrial node + + + + + A muscle cell that is part of the sinoatrial node. + FMA:67102 + GOC:tfm + + + + + SA nodal myocyte + FMA:67102 + + + + + SA node cardiac muscle cell + GOC:pr + + + + + myocyte of sinoatrial node + FMA:67102 + + + + + sinoatrial node cell + GOC:pr + + + + + sinuatrial node myocyte + FMA:67102 + + + + + + + + + + + + + + + + + + + + A muscle cell that is part of the atrioventricular node. + FMA:67106 + AV nodal myocyte + AV node cardiac muscle cell + AV node cell + atrioventricular node cell + atrioventricular node myocyte + cell + myocyte of atrioventricular node + + + + + A muscle cell that is part of the atrioventricular node. + FMA:67106 + GOC:tfm + + + + + AV nodal myocyte + FMA:67106 + + + + + AV node cardiac muscle cell + GOC:pr + + + + + AV node cell + GOC:pr + + + + + atrioventricular node cell + GOC:pr + + + + + atrioventricular node myocyte + FMA:67106 + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the small intestine Peyer's patch. + FMA:67757 + cell + endothelial cell of Peyer's patch + + + + + + true + + + + + An endothelial cell that is part of the small intestine Peyer's patch. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the arteriole. + FMA:67760 + KUPO:0001097 + cell + endothelial cell of arteriole + + + + + + true + + + + + An endothelial cell that is part of the arteriole. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A blood vessel endothelial cell that is part of an arterial endothelium. + CL:0002542 + BTO:0004758 + FMA:67761 + KUPO:0001095 + arterial endothelial cell + cell + endothelial cell of artery + + + + + A blood vessel endothelial cell that is part of an arterial endothelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An endothelial cell that is part of the venule. + FMA:67762 + cell + endothelial cell of venule + + + + + + true + + + + + An endothelial cell that is part of the venule. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the gallbladder. + FMA:67780 + cell + epithelial cell of gall bladder + + + + + + true + + + + + An epithelial cell that is part of the gallbladder. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A myoepithelial cell that is part of the mammary gland. + CALOHA:TS-2378 + FMA:67800 + basal cell of lactiferous duct + cell + myoepithelial cell of lactiferous gland + + + + + + true + + + + + A myoepithelial cell that is part of the mammary gland. + GOC:tfm + + + + + basal cell of lactiferous duct + FMA:67800 + + + + + + + + + + + + + + + + + + + + A myoepithelial cell that is part of the sweat gland. + FMA:67801 + cell + myoepithelial cell of sweat gland + + + + + + true + + + + + A myoepithelial cell that is part of the sweat gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A myoepithelial cell that is part of the mammary gland alveolus. + FMA:67802 + basal cell of alveolus of lactiferous gland + myoepithelial cell of mammary alveolus + cell + myoepithelial cell of lactiferous alveolus + + + + + + true + + + + + A myoepithelial cell that is part of the mammary gland alveolus. + GOC:tfm + + + + + basal cell of alveolus of lactiferous gland + FMA:67802 + + + + + myoepithelial cell of mammary alveolus + FMA:67802 + + + + + + + + + + + + + + + + + + + + A myoepithelial cell that is part of the lactiferous duct. + FMA:67803 + cell + myoepithelial cell of lactiferous duct + + + + + + true + + + + + A myoepithelial cell that is part of the lactiferous duct. + GOC:tfm + + + + + + + + + A myoepithelial cell that is part of the terminal lactiferous duct. + FMA:67804 + cell + myoepithelial cell of terminal lactiferous duct + + + + + A myoepithelial cell that is part of the terminal lactiferous duct. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the paraaortic body. + FMA:69328 + chromaffin cell of para-aortic body + cell + chromaffin cell of paraaortic body + + + + + + true + + + + + A chromaffin cell that is part of the paraaortic body. + GOC:tfm + + + + + chromaffin cell of para-aortic body + FMA:69328 + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the paraganglion. + FMA:69335 + cell + chromaffin cell of paraganglion + + + + + + true + + + + + A chromaffin cell that is part of the paraganglion. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the adrenal gland. + FMA:69794 + adrenal chromaffin cell + cell + chromaffin cell of adrenal gland + + + + + + true + + + + + A chromaffin cell that is part of the adrenal gland. + GOC:tfm + + + + + adrenal chromaffin cell + GO:0061104 + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the adrenal cortex. + FMA:69795 + chromaffin cell of adrenal cortex + cell + Not clear this cell type exists. Can't call it a cortical adrenal cell because of different germ layer origin. + adrenal cortex chromaffin cell + + + + + + true + + + + + A chromaffin cell that is part of the adrenal cortex. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A somatic stem cell that is part of the epidermis. + FMA:70541 + epidermal stem cell + cell + stem cell of epidermis + + + + + + true + + + + + A somatic stem cell that is part of the epidermis. + GOC:tfm + + + + + epidermal stem cell + FMA:70541 + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the conjunctiva. + FMA:70552 + epithelial cell of conjunctiva + cell + conjunctival epithelial cell + + + + + + true + + + + + An epithelial cell that is part of the conjunctiva. + GOC:tfm + + + + + epithelial cell of conjunctiva + FMA:70552 + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the lacrimal canaliculus. + FMA:70553 + cell + epithelial cell of lacrimal canaliculus + + + + + + true + + + + + An epithelial cell that is part of the lacrimal canaliculus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the external acoustic meatus. + FMA:70555 + cell + epithelial cell of external acoustic meatus + + + + + + true + + + + + An epithelial cell that is part of the external acoustic meatus. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the lacrimal duct. + FMA:70559 + cell + epithelial cell of lacrimal duct + + + + + + true + + + + + An epithelial cell that is part of the lacrimal duct. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the lacrimal sac. + FMA:70560 + cell + epithelial cell of lacrimal sac + + + + + + true + + + + + An epithelial cell that is part of the lacrimal sac. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the nasolacrimal duct. + FMA:70561 + cell + epithelial cell of nasolacrimal duct + + + + + + true + + + + + An epithelial cell that is part of the nasolacrimal duct. + GOC:tfm + + + + + + + + + An epithelial cell that is part of the wall of inferior part of anal canal. + FMA:70562 + cell + epithelial cell of wall of inferior part of anal canal + + + + + An epithelial cell that is part of the wall of inferior part of anal canal. + GOC:tfm + + + + + + + + + + An epithelial cell that is part of the viscerocranial mucosa. + FMA:70583 + cell + epithelial cell of viscerocranial mucosa + + + + + An epithelial cell that is part of the viscerocranial mucosa. + GOC:tfm + + + + + + + + + + + + + + + + + + + + An urothelial cell that is part of the trigone of urinary bladder. + FMA:70598 + epithelial cell of vesical trigone + cell + urothelial cell of trigone of urinary bladder + + + + + + true + + + + + An urothelial cell that is part of the trigone of urinary bladder. + GOC:tfm + + + + + epithelial cell of vesical trigone + FMA:70598 + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the ciliary body. + FMA:70610 + smooth muscle cell of ciliary body + cell + ciliary muscle cell + + + + + + true + + + + + A smooth muscle cell that is part of the ciliary body. + GOC:tfm + + + + + smooth muscle cell of ciliary body + FMA:70610 + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the anterior chamber of eyeball. + FMA:70615 + cell + mesothelial cell of anterior chamber of eye + + + + + + true + + + + + A mesothelial cell that is part of the anterior chamber of eyeball. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A myoepithelial cell that is part of the dilatator pupillae. + FMA:70619 + cell + myoepithelial cell of dilator pupillae + + + + + + true + + + + + A myoepithelial cell that is part of the dilatator pupillae. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell that is part of the epithelium of esophagus. + FMA:70731 + basal cell of esophageal epithelium + cell + epithelial cell of stratum germinativum of esophagus + + + + + + true + + + + + A basal cell that is part of the epithelium of esophagus. + GOC:tfm + + + + + basal cell of esophageal epithelium + FMA:70731 + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the sweat gland. + FMA:70952 + cell + epithelial cell of sweat gland + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the sweat gland. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the nephron. + FMA:70965 + cell + epithelial cell of nephron + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the nephron. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the glomerular capsule. + FMA:70966 + KUPO:0001034 + Bowmans capsule epithelial cell + epithelial cell of Bowman's capsule + cell + epithelial cell of glomerular capsule + + + + + + true + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the glomerular capsule. + GOC:tfm + + + + + epithelial cell of Bowman's capsule + FMA:70966 + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the visceral layer of glomerular capsule. + FMA:70967 + glomerular podocyte + cell + consider merging into CL:0000653 + epithelial cell of visceral layer of glomerular capsule + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the visceral layer of glomerular capsule. + GOC:tfm + + + + + glomerular podocyte + FMA:70967 + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the glomerular parietal epithelium. + CL:1000897 + FMA:70968 + KUPO:0001035 + epithelial cell of parietal layer of glomerular capsule + cell + parietal epithelial cell + + + + + + true + + + + + An epithelial cell that is part of the glomerular parietal epithelium. + GOC:tfm + + + + + epithelial cell of parietal layer of glomerular capsule + FMA:70968 + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the intermediate tubule. + FMA:70980 + cell + epithelial cell of intermediate tubule + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the intermediate tubule. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the collecting duct of renal tubule. + FMA:70982 + KUPO:0001059 + epithelial cell of renal collecting tubule + cell + kidney collecting duct epithelial cell + + + + + + true + + + + + + true + + + + + + true + + + + + An epithelial cell that is part of the collecting duct of renal tubule. + GOC:tfm + + + + + epithelial cell of renal collecting tubule + FMA:70982 + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the parietal peritoneum. + FMA:72142 + cell + mesothelial cell of parietal peritoneum + + + + + + true + + + + + + true + + + + + A mesothelial cell that is part of the parietal peritoneum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the visceral peritoneum. + FMA:72143 + cell + mesothelial cell of visceral peritoneum + + + + + + true + + + + + + true + + + + + A mesothelial cell that is part of the visceral peritoneum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A melanocyte that is part of the skin of body. + CALOHA:TS-2374 + FMA:72144 + skin melanocyte + cell + melanocyte of skin + + + + + + true + + + + + A melanocyte that is part of the skin of body. + GOC:tfm + + + + + skin melanocyte + FMA:72144 + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the ovary. + FMA:74319 + cell + chromaffin cell of ovary + + + + + + true + + + + + A chromaffin cell that is part of the ovary. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the right ovary. + FMA:74320 + cell + chromaffin cell of right ovary + + + + + + true + + + + + A chromaffin cell that is part of the right ovary. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A chromaffin cell that is part of the left ovary. + FMA:74321 + cell + chromaffin cell of left ovary + + + + + + true + + + + + A chromaffin cell that is part of the left ovary. + GOC:tfm + + + + + + + + + + + + + + + A myoepithelial cell that is part of the acinus of lactiferous gland. + FMA:74469 + basal cell of acinus of lactiferous gland + cell + myoepithelial cell of acinus of lactiferous gland + + + + + A myoepithelial cell that is part of the acinus of lactiferous gland. + GOC:tfm + + + + + basal cell of acinus of lactiferous gland + FMA:74469 + + + + + + + + + A myoepithelial cell that is part of the main lactiferous duct. + FMA:74499 + cell + myoepithelial cell of main lactiferous duct + + + + + A myoepithelial cell that is part of the main lactiferous duct. + GOC:tfm + + + + + + + + + A myoepithelial cell that is part of the primary lactiferous duct. + FMA:74500 + cell + myoepithelial cell of primary lactiferous duct + + + + + A myoepithelial cell that is part of the primary lactiferous duct. + GOC:tfm + + + + + + + + + A myoepithelial cell that is part of the secondary lactiferous duct. + FMA:74501 + cell + myoepithelial cell of secondary lactiferous duct + + + + + A myoepithelial cell that is part of the secondary lactiferous duct. + GOC:tfm + + + + + + + + + A myoepithelial cell that is part of the tertiary lactiferous duct. + FMA:74502 + cell + myoepithelial cell of tertiary lactiferous duct + + + + + A myoepithelial cell that is part of the tertiary lactiferous duct. + GOC:tfm + + + + + + + + + A myoepithelial cell that is part of the quarternary lactiferous duct. + FMA:74503 + cell + myoepithelial cell of quarternary lactiferous duct + + + + + A myoepithelial cell that is part of the quarternary lactiferous duct. + GOC:tfm + + + + + + + + + + + + + + + A nodal myocyte that is part of the sinoatrial node. + FMA:83383 + cardiac pacemaker cell of sinuatrial node + pacemaker cell of sinoatrial node + pacemaker cell of sinuatrial node + cell + cardiac pacemaker cell of sinoatrial node + + + + + A nodal myocyte that is part of the sinoatrial node. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the sinoatrial node. + FMA:83384 + transitinal myocyte of sinuatrial node + cell + transitional myocyte of sinoatrial node + + + + + + true + + + + + A transitional myocyte that is part of the sinoatrial node. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A Purkinje myocyte that is part of the atrioventricular node. + FMA:83386 + cell + Purkinje myocyte of atrioventricular node + + + + + + true + + + + + A Purkinje myocyte that is part of the atrioventricular node. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the internodal tract. + FMA:83387 + cell + transitional myocyte of internodal tract + + + + + + true + + + + + A transitional myocyte that is part of the internodal tract. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A transitional myocyte that is part of the atrioventricular bundle. + FMA:83388 + FMA:83885 + cell + transitional myocyte of atrioventricular bundle + + + + + + true + + + + + A transitional myocyte that is part of the atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A myocardial endocrine cell that is part of the interventricular septum. + FMA:83390 + cell + myocardial endocrine cell of interventricular septum + + + + + + true + + + + + A myocardial endocrine cell that is part of the interventricular septum. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A Purkinje myocyte that is part of the internodal tract. + FMA:83392 + cell + Purkinje myocyte of internodal tract + + + + + + true + + + + + A Purkinje myocyte that is part of the internodal tract. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A Purkinje myocyte that is part of the atrioventricular bundle. + FMA:83393 + cell + Purkinje myocyte of atrioventricular bundle + + + + + + true + + + + + A Purkinje myocyte that is part of the atrioventricular bundle. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A basal cell that is part of the urothelium. + FMA:84150 + cell + basal cell of urothelium + + + + + + true + + + + + A basal cell that is part of the urothelium. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A smooth muscle cell that is part of the prostate gland. + FMA:84583 + smooth muscle fiber of prostate + cell + smooth muscle cell of prostate + + + + + + true + + + + + A smooth muscle cell that is part of the prostate gland. + GOC:tfm + + + + + smooth muscle fiber of prostate + FMA:84583 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts. + FMA:86481 + epithelial cell of bile duct + cell + cholangiocyte + + + + + + true + + + + + An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts. + GOC:tfm + PMID:16550043 + PMID:18356246 + + + + + + + + + + + + + + + + + + + + A reticular cell that is part of the splenic cord. + FMA:86497 + cell + reticular cell of splenic cord + + + + + + true + + + + + A reticular cell that is part of the splenic cord. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the peritoneum. + FMA:86736 + peritoneal mesothelial cell + cell + mesothelial cell of peritoneum + + + + + + true + + + + + A mesothelial cell that is part of the peritoneum. + GOC:tfm + + + + + peritoneal mesothelial cell + FMA:86736 + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the pleura. + FMA:86737 + pleural mesothelial cell + cell + mesothelial cell of pleura + + + + + + true + + + + + A mesothelial cell that is part of the pleura. + GOC:tfm + + + + + pleural mesothelial cell + FMA:86737 + + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the parietal pleura. + FMA:86738 + cell + mesothelial cell of parietal pleura + + + + + + true + + + + + + true + + + + + A mesothelial cell that is part of the parietal pleura. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A mesothelial cell that is part of the visceral pleura. + FMA:86739 + cell + mesothelial cell of visceral pleura + + + + + + true + + + + + A mesothelial cell that is part of the visceral pleura. + GOC:tfm + + + + + + + + + + + + + + + + + + + An epithelial cell that is part of a nephron tubule. + FMA:86785 + KUPO:0001022 + kidney tubule epithelial cell + cell + This needs to be further defined as a juxtamedullary nephron. Will request the juxtamedullary nephron tubule class from UBERON. + nephron tubule epithelial cell + + + + + An epithelial cell that is part of a nephron tubule. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + A goblet cell that is part of the small intestine. + FMA:86929 + goblet cell of epithelium of small intestine + goblet cell of small intestine + small intestinal goblet cell + cell + small intestine goblet cell + + + + + A goblet cell that is part of the small intestine. + GOC:tfm + + + + + small intestinal goblet cell + FMA:86929 + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001010 + cell + kidney cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001013 + cell + kidney interstitial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001017 + cell + kidney medulla cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001018 + cell + kidney pelvis cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001020 + cell + kidney tubule cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001023 + cell + kidney glomerular epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001060 + cell + kidney medulla collecting duct epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001061 + cell + kidney inner medulla collecting duct epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001062 + cell + kidney outer medulla collecting duct epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001063 + cell + kidney cortex collecting duct epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001064 + cell + kidney papillary duct principal epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001111 + cell + inner renal cortex cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001112 + cell + papillary tips cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001115 + cell + lower urinary tract cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001116 + cell + ureteral cell + + + + + + true + + + + + + + + + + + + + + + + + + + + KUPO:0001015 + cell + kidney nerve cell + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001021 + cell + kidney corpuscule cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001024 + cell + kidney cortex tubule cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001025 + cell + kidney outer medulla cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001026 + cell + kidney inner medulla cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001028 + juxtaglomerulus cell + cell + juxtaglomerular complex cell + + + + + + true + + + + + juxtaglomerulus cell + GO:0072052 + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001091 + cell + kidney cortex interstitial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001092 + cell + kidney medulla interstitial cell + + + + + + true + + + + + + true + + + + + + + + + + KUPO:0001101 + cell + kidney interstitial myofibroblast + + + + + + + + + + KUPO:0001102 + cell + kidney interstitial fibroblast + + + + + + + + + + KUPO:0001103 + cell + kidney interstitial fibrocyte + + + + + + + + + + KUPO:0001106 + cell + kidney interstitial alternatively activated macrophage + + + + + + + + + + KUPO:0001107 + cell + kidney interstitial inflammatory macrophage + + + + + + + + + + KUPO:0001108 + cell + kidney interstitial suppressor macrophage + + + + + + + + + + KUPO:0001109 + cell + kidney resident macrophage + + + + + + + + + + KUPO:0001110 + cell + kidney resident dendritic cell + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001113 + cell + kidney pelvis smooth muscle cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001114 + cell + kidney pelvis urothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001117 + cell + ureter urothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001119 + cell + ureter adventitial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001130 + cell + kidney cortex collecting duct principal cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001131 + cell + kidney cortex collecting duct intercalated cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001132 + cell + kidney outer medulla collecting duct principal cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001133 + cell + kidney outer medulla collecting duct intercalated cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001134 + cell + kidney inner medulla collecting duct principal cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001135 + cell + kidney inner medulla collecting duct intercalated cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001136 + cell + kidney papillary duct intercalated cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001137 + cell + kidney papillary duct principal cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney. + KUPO:0001032 + intraglomerular mesangial cell + cell + glomerular mesangial cell + + + + + + true + + + + + Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney. + Wikipedia:Intraglomerular_mesangial_cell + + + + + intraglomerular mesangial cell + CL:cjm + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001036 + cell + glomerular cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001058 + cell + kidney connecting tubule epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001093 + cell + kidney inner medulla interstitial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001094 + cell + kidney outer medulla interstitial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001045 + cell + kidney proximal convoluted tubule epithelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001046 + cell + kidney proximal straight tubule epithelial cell + + + + + + true + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001056 + cell + kidney distal convoluted tubule epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001057 + cell + macula densa epithelial cell + + + + + + true + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001014 + cell + kidney blood vessel cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001029 + cell + kidney arterial blood vessel cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + KUPO:0001030 + cell + kidney capillary endothelial cell + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001031 + cell + kidney venous blood vessel cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001047 + cell + kidney loop of Henle epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001118 + cell + ureter smooth muscle cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001037 + cell + glomerular capillary endothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001038 + cell + kidney afferent arteriole cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001041 + cell + kidney efferent arteriole cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001048 + cell + kidney loop of Henle ascending limb epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001053 + cell + kidney loop of Henle descending limb epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001065 + cell + peritubular capillary endothelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001068 + cell + vasa recta cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001077 + cell + kidney cortex artery cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001084 + cell + kidney cortex vein cell + + + + + + true + + + + + + true + + + + + + + + + + KUPO:0001096 + cell + Note that the source of this term is KUPO:0001096 (artery smooth muscle cell), which we believe actually denotes the kidney specific structure. + kidney artery smooth muscle cell + + + + + + + + + + KUPO:0001098 + cell + Note that the source of this term is KUPO:0001098 (arteriole smooth muscle cell), which we believe actually denotes the kidney specific structure. + kidney arteriole smooth muscle cell + + + + + + + + + + KUPO:0001100 + cell + Note that the source of this term is KUPO:0001068 (venous system smooth muscle cell), which we believe actually denotes the kidney specific structure. + kidney venous system smooth muscle cell + + + + + + + + + + + + + + + + + + + + + + KUPO:0001039 + cell + kidney afferent arteriole endothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001040 + cell + kidney afferent arteriole smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001042 + cell + kidney efferent arteriole endothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001043 + cell + kidney efferent arteriole smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001049 + cell + kidney loop of Henle thick ascending limb epithelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001050 + cell + kidney loop of Henle thin ascending limb epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001051 + cell + kidney loop of Henle medullary thick ascending limb epithelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001052 + cell + kidney loop of Henle cortical thick ascending limb epithelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001054 + cell + kidney loop of Henle thin descending limb epithelial cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001066 + cell + kidney outer medulla peritubular capillary cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001067 + cell + kidney cortex peritubular capillary cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001069 + cell + inner renal medulla vasa recta cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001070 + cell + outer renal medulla vasa recta cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001074 + cell + vasa recta ascending limb cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001078 + cell + arcuate artery cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001081 + cell + interlobular artery cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001085 + cell + arcuate vein cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001088 + cell + interlobular vein cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001075 + cell + inner medulla vasa recta ascending limb cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001076 + cell + outer medulla vasa recta ascending limb cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001079 + cell + arcuate artery endothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001080 + cell + arcuate artery smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001082 + cell + interlobulary artery endothelial cell + + + + + + + + + + + + + + + + + + + + + + KUPO:0001083 + cell + interlobulary artery smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001086 + cell + arcuate vein endothelial cell + + + + + + + + + + + + + + + + + + + + + + KUPO:0001087 + cell + arcuate vein smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + KUPO:0001089 + cell + interlobulary vein endothelial cell + + + + + + + + + + + + + + + + + + + + + + KUPO:0001090 + cell + interlobulary vein smooth muscle cell + + + + + + true + + + + + + + + + + + + + + + + + + + + KUPO:0001012 + Wikipedia:Kidney_collecting_duct_cell + cell + kidney collecting duct cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001071 + cell + vasa recta descending limb cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001072 + cell + inner medulla vasa recta descending limb cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001073 + cell + outer medulla vasa recta descending limb cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + KUPO:0001104 + cell + renal interstitial pericyte + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001120 + cell + bladder cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001123 + cell + urethra cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001121 + cell + bladder urothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001124 + cell + urethra urothelial cell + + + + + + true + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001128 + cell + kidney collecting duct principal cell + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + KUPO:0001129 + http://en.wikipedia.org/wiki/Collecting_duct_system#Intercalated_cells + cell + kidney collecting duct intercalated cell + + + + + + true + + + + + + + + + + + + + + + + + + + An epithelial cell of the exocrine pancreas. + FMA:70986 + exocrine pancreas cell + cell + epithelial cell of exocrine pancreas + + + + + An epithelial cell of the exocrine pancreas. + GOC:tfm + + + + + + + + + + + + + + + + + + + + + + + + + + A neuron residing in the olfactory bulb that serve to process and refine signals arising from olfactory sensory neurons + cl + olfactory bulb interneuron + + + + + A neuron residing in the olfactory bulb that serve to process and refine signals arising from olfactory sensory neurons + PMID:18603310 + + + + + + + + + + + + + + + the small neuron in the glomerular layer of the olfactory bulb whose dendrites arborize within a glomerulus, where it receives synaptic input from olfactory receptor cell axon terminals, and also engages in dendrodendritic interactions with mitral and tufted cell dendrites; uses both GABA and dopamine as a neurotransmitter + BTO:0003796 + NIFSTD:nifext_122 + glomerular layer cell + olfactory bulb (accessory) glomerular layer cell + olfactory bulb glomerular layer cell + olfactory bulb glomerularal cell + periglomerular cell + cl + periglomerular cell + + + + + the small neuron in the glomerular layer of the olfactory bulb whose dendrites arborize within a glomerulus, where it receives synaptic input from olfactory receptor cell axon terminals, and also engages in dendrodendritic interactions with mitral and tufted cell dendrites; uses both GABA and dopamine as a neurotransmitter + MP:0009943 + + + + + glomerular layer cell + NIFSTD:nifext_122 + + + + + olfactory bulb (accessory) glomerular layer cell + NIFSTD:nifext_122 + + + + + olfactory bulb glomerular layer cell + NIFSTD:nifext_122 + + + + + olfactory bulb glomerularal cell + MP:0009943 + + + + + periglomerular cell + NIFSTD:nifext_122 + + + + + + + + + the subcutaneous mechanoreceptors that innervate tylotrich hair follicles + cl + hair-tylotrich neuron + + + + + the subcutaneous mechanoreceptors that innervate tylotrich hair follicles + MP:0000977 + + + + + + + + + the subcutaneous mechanoreceptors that innervate vellus hairs + cl + hair-down neuron + + + + + the subcutaneous mechanoreceptors that innervate vellus hairs + MP:0000979 + + + + + + + + + + + + + + + + + + + + + + + + + + A sensory neuron of the dorsal root ganglia that senses body position and sends information about how much the muscle is stretched to the spinal cord. + proprioceptive neuron + cl + sensory neuron of dorsal root ganglion + + + + + + true + + + + + A sensory neuron of the dorsal root ganglia that senses body position and sends information about how much the muscle is stretched to the spinal cord. + MP:0004297 + + + + + proprioceptive neuron + MP:0004297 + + + + + + + + + + + + + + + the inhibitory projection neurons located in the striatum that integrate glutamatergic signals arising from the cerebral cortex and thalamus + BTO:0004778 + striatal medium spiny neuron + cl + medium-sized densely spiny neuron + medium spiny neuron + + + + + the inhibitory projection neurons located in the striatum that integrate glutamatergic signals arising from the cerebral cortex and thalamus + MP:0008462 + + + + + striatal medium spiny neuron + GO:0021773 + + + + + medium-sized densely spiny neuron + BTO:0004778 + + + + + + + + + + + + + + + the large glutaminergic nerve cells whose dendrites synapse with axons of the olfactory receptor neurons in the glomerular layer of the olfactory bulb, and whose axons pass centrally in the olfactory tract to the olfactory cortex + cl + mitral cell + + + + + the large glutaminergic nerve cells whose dendrites synapse with axons of the olfactory receptor neurons in the glomerular layer of the olfactory bulb, and whose axons pass centrally in the olfactory tract to the olfactory cortex + MP:0009954 + + + + + + + + + + + + + + + the principal glutaminergic neuron located in the outer third of the external plexiform layer of the olfactory bulb; a single short primary dendrite traverses the outer external plexiform layer and terminates within an olfactory glomerulus in a tuft of branches, where it receives the input from olfactory receptor neuron axon terminals; axons of the tufted cells transfer information to a number of areas in the brain, including the piriform cortex, entorhinal cortex, olfactory tubercle, and amygdala + cl + olfactory bulb tufted cell + + + + + the principal glutaminergic neuron located in the outer third of the external plexiform layer of the olfactory bulb; a single short primary dendrite traverses the outer external plexiform layer and terminates within an olfactory glomerulus in a tuft of branches, where it receives the input from olfactory receptor neuron axon terminals; axons of the tufted cells transfer information to a number of areas in the brain, including the piriform cortex, entorhinal cortex, olfactory tubercle, and amygdala + MP:0009955 + + + + + + + + + + + + + + + + + + + + + the secretory neurons of the paraventricular nucleus that synthesize and secrete vasopressin, corticotropin-releasing factor (CRF) and thyrotropin-releasing hormone (TRH) into blood vessels in the hypothalamo-pituitary portal system + parvocellular neuron + parvocellular neurosecretory neuron + cl + parvocellular neurosecretory cell + + + + + the secretory neurons of the paraventricular nucleus that synthesize and secrete vasopressin, corticotropin-releasing factor (CRF) and thyrotropin-releasing hormone (TRH) into blood vessels in the hypothalamo-pituitary portal system + MP:0010125 + + + + + + + + + + + + + + + + + + + + the neurons that utilize glycine as a neurotransmitter + cl + glycinergic neuron + + + + + the neurons that utilize glycine as a neurotransmitter + MP:0010385 + + + + + + + + + + + + + + + + + + + the various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the intestinal tract + cl + intestinal enteroendocrine cell + + + + + the various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the intestinal tract + MP:0010802 + + + + + + + + + + + + + + + + + + + the various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach + cl + stomach enteroendocrine cell + + + + + the various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach + MP:0010803 + + + + + + + + + + + + + + + + + + + + + + + chemosensitive cells that innervate the vomernasal organ epithelium and are responsible for receiving and transmitting pheromone signals + cl + vomeronasal sensory neuron + + + + + chemosensitive cells that innervate the vomernasal organ epithelium and are responsible for receiving and transmitting pheromone signals + MP:0011679 + + + + + + + + + + + + + + + a respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole, which gives rise to alveolar cell types and Clara cells in response to lung injury. + cl + bronchioalveolar stem cells + + + + + a respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole, which gives rise to alveolar cell types and Clara cells in response to lung injury. + MP:0011691 + + + + + + + + + + + + + + + + + + + + + + + + + cl + endothelial cell of lung + pulmonary vessel endothelial cell + lung endothelial cell + + + + + + + + + + + + + + + + + + + + + + + + + BTO:0001141 + cl + PAEC cell + pulmonary artery endothelial cell + + + + + PAEC cell + BTO:0001141 + + + + + + + + + + + + + + + + + + + An interneuron of the hippocampus. + FMA:84777 + cl + hippocampal interneuron + + + + + An interneuron of the hippocampus. + GOC:pr + + + + + + + + + + + + + + + + + + + + + + + + + A pyramidal neuron of the hippocampus. + NIFSTD:sao131261273 + SAO:sao131261273 + hippocampus (CA) pyramidal cell + hippocampus (CA) pyramidal neuron + cl + hippocampal pyramidal neuron + + + + + A pyramidal neuron of the hippocampus. + GOC:pr + PMID:19342486 + + + + + hippocampus (CA) pyramidal cell + NIFSTD:sao131261273 + + + + + hippocampus (CA) pyramidal neuron + NIFSTD:sao131261273 + + + + + + + + + + + + + + + + + + + + + + + + + Vascular endothelium found in colon blood vessels. + CALOHA:TS-2397 + colon endothelial cells + colonic endothelial cell + colon endothelial cell + + + + + Vascular endothelium found in colon blood vessels. + NPX:PDR + + + + + colon endothelial cells + CALOHA:TS-2397 + + + + + + colonic endothelial cell + CALOHA:TS-2397 + + + + + + + + + + + + + + + + + + + + + + + + + + Cell of the nasopharyngeal epithelium. + CALOHA:TS-2398 + nasopharynx respiratory epithelial cells + nasopharyngeal epithelial cell + + + + + Cell of the nasopharyngeal epithelium. + NPX:PDR + + + + + nasopharynx respiratory epithelial cells + CALOHA:TS-2398 + + + + + + + + + + + + + + + + + + + + + + + + + Squamous cell of uterine cervix epithelium. + CALOHA:TS-1251 + cervix squamous cell + cervix squamous epithelial cell + cervix, uterine squamous epithelial cells + uterine cervix squamous epithelial cell + uterine cervix squamous epithelial cells + uterine cervix squamous cell + + + + + Squamous cell of uterine cervix epithelium. + NPX:PDR + + + + + cervix squamous cell + CALOHA:TS-1251 + + + + + cervix squamous epithelial cell + CALOHA:TS-1251 + + + + + cervix, uterine squamous epithelial cells + CALOHA:TS-1251 + + + + + uterine cervix squamous epithelial cell + CALOHA:TS-1251 + + + + + uterine cervix squamous epithelial cells + CALOHA:TS-1251 + + + + + + + + + + + + + + + + + + + Squamous cell of oral epithelium. + CALOHA:TS-1252 + oral cavity mucosa squamous cell + oral cavity mucosa squamous epithelial cell + oral mucosa squamous epithelial cell + oral mucosa squamous epithelial cells + oral mucosa squamous cell + + + + + Squamous cell of oral epithelium. + NPX:PDR + + + + + oral cavity mucosa squamous cell + CALOHA:TS-1252 + + + + + oral cavity mucosa squamous epithelial cell + CALOHA:TS-1252 + + + + + oral mucosa squamous epithelial cell + CALOHA:TS-1252 + + + + + oral mucosa squamous epithelial cells + CALOHA:TS-1252 + + + + + + + + + + + + + + + + + + + + + + + + + Squamous cell of tonsil epithelium. + CALOHA:TS-1253 + tonsil squamous epithelial cell + tonsil squamous epithelial cells + tonsillar squamous cell + tonsillar squamous epithelial cell + tonsil squamous cell + + + + + Squamous cell of tonsil epithelium. + NPX:PDR + + + + + tonsil squamous epithelial cell + CALOHA:TS-1253 + + + + + tonsil squamous epithelial cells + CALOHA:TS-1253 + + + + + tonsillar squamous cell + CALOHA:TS-1253 + + + + + tonsillar squamous epithelial cell + CALOHA:TS-1253 + + + + + + + + + + + + + + + + + + + + + + + + + Squamous cell of vaginal epithelium. + CALOHA:TS-1254 + vagina squamous epithelial cell + vagina squamous epithelial cells + vaginal squamous cell + vaginal squamous epithelial cell + vagina squamous cell + + + + + Squamous cell of vaginal epithelium. + NPX:PDR + + + + + vagina squamous epithelial cell + CALOHA:TS-1254 + + + + + vagina squamous epithelial cells + CALOHA:TS-1254 + + + + + vaginal squamous cell + CALOHA:TS-1254 + + + + + vaginal squamous epithelial cell + CALOHA:TS-1254 + + + + + + + + + + + + + + + + + + + Glial cell of cerebral cortex. + CALOHA:TS-1256 + brain cortex glial cell + cerebral cortex glial cells + cerebrum cortex glial cell + cerebral cortex glial cell + + + + + Glial cell of cerebral cortex. + NPX:PDR + + + + + brain cortex glial cell + CALOHA:TS-1256 + + + + + cerebral cortex glial cells + CALOHA:TS-1256 + + + + + cerebrum cortex glial cell + CALOHA:TS-1256 + + + + + + + + + + + + + + + + + + + Glial cell of hippocampus. + CALOHA:TS-1257 + hippocampal glial cell + hippocampus glial cells + hippocampus neuroglial cell + hippocampus glial cell + + + + + Glial cell of hippocampus. + NPX:PDR + + + + + hippocampal glial cell + CALOHA:TS-1257 + + + + + hippocampus glial cells + CALOHA:TS-1257 + + + + + hippocampus neuroglial cell + CALOHA:TS-1257 + + + + + + + + + + + + + + + + + + + Glial cell of lateral ventricle. + CALOHA:TS-1258 + lateral ventricle glial cells + lateral ventricle glial cell + + + + + Glial cell of lateral ventricle. + NPX:PDR + + + + + lateral ventricle glial cells + CALOHA:TS-1258 + + + + + + + + + + + + + + + + + + + Neuron of lateral ventricle. + CALOHA:TS-1261 + lateral ventricle neural cell + lateral ventricle neuronal cell + lateral ventricle neuronal cells + lateral ventricle neuron + + + + + Neuron of lateral ventricle. + NPX:PDR + + + + + lateral ventricle neural cell + CALOHA:TS-1261 + + + + + lateral ventricle neuronal cell + CALOHA:TS-1261 + + + + + lateral ventricle neuronal cells + CALOHA:TS-1261 + + + + + + + + OBSOLETE: Adipocytes found in the subcutaneous adipose tissue of breast. The breast consists of three main components, the skin, the subcutaneous adipose tissue and the functional glandular tissue that comprises both parenchyma and stroma. + CL:0002617 + breast adipocytes + obsolete breast adipocyte + true + + + + + OBSOLETE: Adipocytes found in the subcutaneous adipose tissue of breast. The breast consists of three main components, the skin, the subcutaneous adipose tissue and the functional glandular tissue that comprises both parenchyma and stroma. + HPA:Breast + + + + + breast adipocytes + CALOHA:TS-2377 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of appendix epithelium. Example: Goblet cells; enterocytes or absorptive cells; enteroendocrine and M cells. + CALOHA:TS-1271 + appendix glandular cells + caecal appendix glandular cell + cecal appendix glandular cell + vermiform appendix glandular cell + appendix glandular cell + + + + + Glandular cell of appendix epithelium. Example: Goblet cells; enterocytes or absorptive cells; enteroendocrine and M cells. + NPX:PDR + + + + + appendix glandular cells + CALOHA:TS-1271 + + + + + caecal appendix glandular cell + CALOHA:TS-1271 + + + + + cecal appendix glandular cell + CALOHA:TS-1271 + + + + + vermiform appendix glandular cell + CALOHA:TS-1271 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of mammary epithelium. Example: glandular cells of large and intermediate ducts, glandular cells in terminal ducts. + CALOHA:TS-1272 + breast glandular cell + breast glandular cells + mammary glandular cell + mammary gland glandular cell + + + + + Glandular cell of mammary epithelium. Example: glandular cells of large and intermediate ducts, glandular cells in terminal ducts. + NPX:PDR;HPA:HPA + + + + + breast glandular cell + CALOHA:TS-1272 + + + + + breast glandular cells + CALOHA:TS-1272 + + + + + mammary glandular cell + CALOHA:TS-1272 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of uterine cervix epithelium. + CALOHA:TS-1273 + cervix glandular cell + cervix, uterine glandular cell + cervix, uterine glandular cells + uterine cervix glandular cell + + + + + Glandular cell of uterine cervix epithelium. + NPX:PDR + + + + + cervix glandular cell + CALOHA:TS-1273 + + + + + cervix, uterine glandular cell + CALOHA:TS-1273 + + + + + cervix, uterine glandular cells + CALOHA:TS-1273 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of colon epithelium. Example: Goblet cells; enterocytes or absorptive cells; enteroendocrine and M cells. + CALOHA:TS-1274 + colon glandular cells + colon glandular cell + + + + + Glandular cell of colon epithelium. Example: Goblet cells; enterocytes or absorptive cells; enteroendocrine and M cells. + NPX:PDR + + + + + colon glandular cells + CALOHA:TS-1274 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of duodenal epithelium. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Brunner's gland cell. + CALOHA:TS-1275 + duodenum glandular cells + duodenum glandular cell + + + + + Glandular cell of duodenal epithelium. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Brunner's gland cell. + NPX:PDR + + + + + duodenum glandular cells + CALOHA:TS-1275 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of epididymal epithelium. + CALOHA:TS-1276 + epididymal glandular cell + epididymis glandular cells + epididymis glandular cell + + + + + Glandular cell of epididymal epithelium. + NPX:PDR + + + + + epididymal glandular cell + CALOHA:TS-1276 + + + + + epididymis glandular cells + CALOHA:TS-1276 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of oviduct epithelium. Example: peg cells, ciliated cells. + CALOHA:TS-1277 + fallopian tube glandular cell + fallopian tube glandular cells + uterine tube glandular cell + oviduct glandular cell + + + + + Glandular cell of oviduct epithelium. Example: peg cells, ciliated cells. + NPX:PDR;HPA:HPA + + + + + fallopian tube glandular cell + CALOHA:TS-1277 + + + + + fallopian tube glandular cells + CALOHA:TS-1277 + + + + + uterine tube glandular cell + CALOHA:TS-1277 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of gall bladder epithelium. + CALOHA:TS-1278 + gall bladder glandular cells + gallbladder glandular cell + gallbladder glandular cells + gall bladder glandular cell + + + + + Glandular cell of gall bladder epithelium. + NPX:PDR + + + + + gall bladder glandular cells + CALOHA:TS-1278 + + + + + gallbladder glandular cell + CALOHA:TS-1278 + + + + + gallbladder glandular cells + CALOHA:TS-1278 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of parathyroid epithelium. Example: Parathyroid chief cell and parathyroid oxyphil cells. + CALOHA:TS-1279 + parathyroid gland glandular cell + parathyroid gland glandular cells + parathyroid glandular cell + + + + + Glandular cell of parathyroid epithelium. Example: Parathyroid chief cell and parathyroid oxyphil cells. + NPX:PDR;HPA:HPA + + + + + parathyroid gland glandular cell + CALOHA:TS-1279 + + + + + parathyroid gland glandular cells + CALOHA:TS-1279 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of rectal epithelium. Example: Goblet cell; enterocytes or absorptive cells; enteroendocrine and M cells. + CALOHA:TS-1281 + rectal glandular cell + rectum glandular cells + rectum glandular cell + + + + + Glandular cell of rectal epithelium. Example: Goblet cell; enterocytes or absorptive cells; enteroendocrine and M cells. + NPX:PDR + + + + + rectal glandular cell + CALOHA:TS-1281 + + + + + rectum glandular cells + CALOHA:TS-1281 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of salivary gland. Example: Serous cells, mucous cells, cuboidal epithelial cells of the intercalated ducts, simple cuboidal epithelium of the striated ducts, epithelial cells of excretory ducts. + CALOHA:TS-1282 + salivary gland glandular cells + salivary gland glandular cell + + + + + Glandular cell of salivary gland. Example: Serous cells, mucous cells, cuboidal epithelial cells of the intercalated ducts, simple cuboidal epithelium of the striated ducts, epithelial cells of excretory ducts. + NPX:PDR;HPA:HPA + + + + + salivary gland glandular cells + CALOHA:TS-1282 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of seminal vesicle epithelium. + CALOHA:TS-1283 + seminal vesicle glandular cells + seminal vesicle glandular cell + + + + + Glandular cell of seminal vesicle epithelium. + NPX:PDR + + + + + seminal vesicle glandular cells + CALOHA:TS-1283 + + + + + + + + + + + + + + + + + + + + + + + + + A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) . + CALOHA:TS-1286 + FMA:86928 + small bowel glandular cell + small intestinal glandular cell + small intestine glandular cells + small intestine glandular cell + + + + + A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) . + NCI_Thesaurus:Small_Intestinal_Glandular_Cell;NPX:PDR + + + + + small bowel glandular cell + CALOHA:TS-1286 + + + + + small intestinal glandular cell + CALOHA:TS-1286 + + + + + small intestine glandular cells + CALOHA:TS-1286 + + + + + + + + + + + + + + + + + + + + + + + + + Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts. + BTO:0000028 + CALOHA:TS-1242 + exocrine pancreas glandular cell + pancreas exocrine glandular cells + pancreas exocrine glandular cell + + + + + Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts. + NPX:PDR;HPA:HPA + + + + + exocrine pancreas glandular cell + CALOHA:TS-1242 + + + + + pancreas exocrine glandular cells + CALOHA:TS-1242 + + + + + + + + + + + + + + + + + + + Hormone secreting cell located in the cortex of adrenal gland. Glandular cells in the adrenal cortex secrete mineralocorticoids, glucocorticoids and androgens. + CALOHA:TS-2177 + adrenal gland glandular cells + adrenal glandular cell + suprarenal gland glandular cell + adrenal gland glandular cell + + + + + Hormone secreting cell located in the cortex of adrenal gland. Glandular cells in the adrenal cortex secrete mineralocorticoids, glucocorticoids and androgens. + NPX:PDR + + + + + adrenal gland glandular cells + CALOHA:TS-2177 + + + + + adrenal glandular cell + CALOHA:TS-2177 + + + + + suprarenal gland glandular cell + CALOHA:TS-2177 + + + + + + + + + + + + + + + + + + + + + + + + + Endothelial cells forming the walls of the capillaries within the cerebral cortex. + CALOHA:TS-2372 + cerebral cortex endothelial cells + endothelial cells of cerebral cortex + cerebral cortex endothelial cell + + + + + Endothelial cells forming the walls of the capillaries within the cerebral cortex. + NPX:PDR + + + + + cerebral cortex endothelial cells + CALOHA:TS-2372 + + + + + endothelial cells of cerebral cortex + CALOHA:TS-2372 + + + + + + + + + + + + + + + + + + + Circulating macrophages and tissue macrophages (alveolar macrophages) of lung. + CALOHA:TS-0576 + lung macrophages + lung macrophage + + + + + Circulating macrophages and tissue macrophages (alveolar macrophages) of lung. + NPX:PDR;HPA:HPA + + + + + lung macrophages + CALOHA:TS-0576 + + + + + + + + + + + + + + + + + + + Keratinocyte from foreskin. + CALOHA:TS-0385 + foreskin keratinocyte + + + + + Keratinocyte from foreskin. + NPX:PDR + + + + + + + + + + + + + + + + + + + Chondrocyte forming the hyaline cartilage found in joints. + CALOHA:TS-0056 + articular chondrocyte + + + + + Chondrocyte forming the hyaline cartilage found in joints. + NPX:PDR + + + + + + + + + + + + + + + + + + + Fibroblast from foreskin. + CALOHA:TS-0384 + BJ fibroblast + foreskin fibroblast + + + + + Fibroblast from foreskin. + NPX:PDR + + + + + + + + + + + + + + + + + + + Fibroblast from muscle organ. + CALOHA:TS-0643 + muscle fibroblast + + + + + Fibroblast from muscle organ. + NPX:PDR + + + + + + + + + + + + + + + + + + + + + + + + + Hematopoietic cells resident in the bone marrow. Include: hematopoietic stem cells (lymphoid stem cells and myeloid stem cells) and the precursor cells for thrombocytes, erythrocytes, basophils, neutrophils, eosinophils, monocytes and lymphocytes. + CALOHA:TS-2109 + bone marrow hematopoietic cells + bone marrow poietic cells + bone marrow hematopoietic cell + + + + + Hematopoietic cells resident in the bone marrow. Include: hematopoietic stem cells (lymphoid stem cells and myeloid stem cells) and the precursor cells for thrombocytes, erythrocytes, basophils, neutrophils, eosinophils, monocytes and lymphocytes. + NPX:PDR + + + + + bone marrow hematopoietic cells + CALOHA:TS-2109 + + + + + bone marrow poietic cells + CALOHA:TS-2109 + + + + + + + + + + + + + + + + + + + Neuron of the cerebellum. + CALOHA:TS-2359 + FMA:84665 + cerebellum neuron + cerebellar neuron + + + + + Neuron of the cerebellum. + NPX:PDR + + + + + cerebellum neuron + CALOHA:TS-2359 + + + + + + + + + + + + + + + + + + + Any melanocyte that is part of a epidermis. + TermGenie + 2014-02-03T23:03:09Z + cell + CL:2000000 + These cells are found primarily, but not exclusively, in primates including humans + epidermal melanocyte + + + + + Any melanocyte that is part of a epidermis. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood. + TermGenie + 2014-02-11T17:29:04Z + cell + CL:2000001 + peripheral blood mononuclear cell + + + + + A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any native cell that is part of a decidua. + TermGenie + 2014-02-20T23:06:41Z + cell + CL:2000002 + decidua cell + + + + + Any native cell that is part of a decidua. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any cell that is part of a pituitary gland. + TermGenie + 2014-03-26T22:14:56Z + cell + CL:2000004 + pituitary gland cell + + + + + Any cell that is part of a pituitary gland. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any macroglial cell that is part of a brain. + TermGenie + 2014-03-28T21:35:27Z + cell + CL:2000005 + brain macroglial cell + + + + + Any macroglial cell that is part of a brain. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any germinal center B cell that is part of a tonsil. + TermGenie + 2014-03-28T21:35:33Z + cell + CL:2000006 + tonsil germinal center B cell + + + + + Any germinal center B cell that is part of a tonsil. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Chondrocyte forming the hyaline cartilage found in the knee joint. + TermGenie + 2014-06-04T14:40:11Z + cell + CL:2000007 + articular chondrocyte of knee joint + + + + + Chondrocyte forming the hyaline cartilage found in the knee joint. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any blood vessel endothelial cell that is part of a microvascular endothelium. + TermGenie + 2014-06-04T15:07:42Z + cell + CL:2000008 + microvascular endothelial cell + + + + + Any blood vessel endothelial cell that is part of a microvascular endothelium. + GOC:TermGenie + + + + + + + + Any blood vessel endothelial cell that is part of a microvascular endothelium. + CL:2000008 + TermGenie + 2014-06-04T15:09:18Z + cell + CL:2000009 + obsolete microvascular endothelium blood vessel endothelial cell + true + + + + + Any blood vessel endothelial cell that is part of a microvascular endothelium. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any blood vessel endothelial cell that is part of a dermis. + TermGenie + 2014-06-04T15:12:06Z + cell + CL:2000010 + dermis blood vessel endothelial cell + + + + + Any blood vessel endothelial cell that is part of a dermis. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any endothelial cell of lymphatic vessel that is part of a dermis. + TermGenie + 2014-06-04T15:15:08Z + cell + CL:2000011 + dermis lymphatic vessel endothelial cell + + + + + Any endothelial cell of lymphatic vessel that is part of a dermis. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any skin fibroblast that is part of a pedal digit skin. + TermGenie + 2014-06-04T15:16:44Z + cell + CL:2000012 + fibroblast of pedal digit skin + + + + + Any skin fibroblast that is part of a pedal digit skin. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any skin fibroblast that is part of a skin of abdomen. + TermGenie + 2014-06-04T15:18:16Z + cell + CL:2000013 + fibroblast of skin of abdomen + + + + + Any skin fibroblast that is part of a skin of abdomen. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any skin fibroblast that is part of a upper leg skin. + TermGenie + 2014-06-04T15:19:44Z + cell + CL:2000014 + fibroblast of upper leg skin + + + + + Any skin fibroblast that is part of a upper leg skin. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any skin fibroblast that is part of a arm. + TermGenie + 2014-06-04T15:29:06Z + cell + CL:2000015 + fibroblast of arm + + + + + Any skin fibroblast that is part of a arm. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any lung endothelial cell that is part of a microvascular endothelium. + TermGenie + 2014-06-04T16:00:56Z + cell + CL:2000016 + lung microvascular endothelial cell + + + + + Any lung endothelial cell that is part of a microvascular endothelium. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a periodontal ligament. + TermGenie + 2014-06-04T16:50:33Z + cell + CL:2000017 + fibroblast of peridontal ligament + + + + + Any fibroblast that is part of a periodontal ligament. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any endothelial cell of artery that is part of a coronary artery. + TermGenie + 2014-06-04T17:08:47Z + cell + CL:2000018 + endothelial cell of coronary artery + + + + + Any endothelial cell of artery that is part of a coronary artery. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any photoreceptor cell that is part of a compound eye. + TermGenie + 2014-06-24T23:16:45Z + cell + CL:2000019 + compound eye photoreceptor cell + + + + + Any photoreceptor cell that is part of a compound eye. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any native cell that is part of a inner cell mass. + TermGenie + 2014-06-24T23:16:53Z + cell + CL:2000020 + inner cell mass native cell + + + + + Any native cell that is part of a inner cell mass. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any native cell that is part of a sebaceous gland. + TermGenie + 2014-06-24T23:17:00Z + cell + CL:2000021 + sebaceous gland native cell + + + + + Any native cell that is part of a sebaceous gland. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any native cell that is part of a cardiac septum. + TermGenie + 2014-06-24T23:17:07Z + cell + CL:2000022 + cardiac septum native cell + + + + + Any native cell that is part of a cardiac septum. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any interneuron that is part of a spinal cord ventral column. + TermGenie + 2014-06-25T00:23:36Z + cell + CL:2000023 + spinal cord ventral column interneuron + + + + + Any interneuron that is part of a spinal cord ventral column. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuron that is part of a spinal cord medial motor column. + TermGenie + 2014-06-25T00:23:43Z + cell + CL:2000024 + spinal cord medial motor column neuron + + + + + Any neuron that is part of a spinal cord medial motor column. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any oligodendrocyte that is part of a spinal cord. + TermGenie + 2014-06-25T00:23:50Z + cell + CL:2000025 + spinal cord oligodendrocyte + + + + + Any oligodendrocyte that is part of a spinal cord. + GOC:TermGenie + + + + + + + + Any Golgi cell that is part of a cerebellum. + TermGenie + 2014-06-25T00:23:57Z + cell + CL:2000026 + obsolete cerebellum Golgi cell + true + + + + + Any Golgi cell that is part of a cerebellum. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any basket cell that is part of a cerebellum. + TermGenie + 2014-06-25T00:24:03Z + cell + CL:2000027 + cerebellum basket cell + + + + + Any basket cell that is part of a cerebellum. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any glutamatergic neuron that is part of a cerebellum. + TermGenie + 2014-06-25T00:24:10Z + cell + CL:2000028 + cerebellum glutamatergic neuron + + + + + Any glutamatergic neuron that is part of a cerebellum. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuron that is part of a central nervous system. + TermGenie + 2014-06-25T01:17:43Z + cell + CL:2000029 + central nervous system neuron + + + + + Any neuron that is part of a central nervous system. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any native cell that is part of a hypothalamus. + TermGenie + 2014-06-25T01:17:50Z + cell + CL:2000030 + hypothalamus native cell + + + + + Any native cell that is part of a hypothalamus. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuron that is part of a lateral line ganglion. + TermGenie + 2014-06-25T01:17:57Z + cell + CL:2000031 + lateral line ganglion neuron + + + + + Any neuron that is part of a lateral line ganglion. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuron that is part of a peripheral nervous system. + TermGenie + 2014-06-25T02:28:17Z + cell + CL:2000032 + peripheral nervous system neuron + + + + + Any neuron that is part of a peripheral nervous system. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any basal cell of epidermis that is part of a limb. + TermGenie + 2014-06-25T02:28:25Z + cell + CL:2000033 + limb basal cell of epidermis + + + + + Any basal cell of epidermis that is part of a limb. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuromast hair cell that is part of a anterior lateral line. + TermGenie + 2014-06-25T03:44:37Z + cell + CL:2000034 + anterior lateral line neuromast hair cell + + + + + Any neuromast hair cell that is part of a anterior lateral line. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuromast mantle cell that is part of a anterior lateral line. + TermGenie + 2014-06-25T03:44:44Z + cell + CL:2000035 + anterior lateral line neuromast mantle cell + + + + + Any neuromast mantle cell that is part of a anterior lateral line. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuromast support cell that is part of a anterior lateral line. + TermGenie + 2014-06-25T03:44:51Z + cell + CL:2000036 + anterior lateral line neuromast support cell + + + + + Any neuromast support cell that is part of a anterior lateral line. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuromast hair cell that is part of a posterior lateral line. + TermGenie + 2014-06-25T03:44:57Z + cell + CL:2000037 + posterior lateral line neuromast hair cell + + + + + Any neuromast hair cell that is part of a posterior lateral line. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuromast mantle cell that is part of a posterior lateral line. + TermGenie + 2014-06-25T03:45:04Z + cell + CL:2000038 + posterior lateral line neuromast mantle cell + + + + + Any neuromast mantle cell that is part of a posterior lateral line. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any neuromast support cell that is part of a posterior lateral line. + TermGenie + 2014-06-25T03:45:11Z + cell + CL:2000039 + posterior lateral line neuromast support cell + + + + + Any neuromast support cell that is part of a posterior lateral line. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a urinary bladder. + TermGenie + 2014-07-09T00:04:47Z + cell + CL:2000040 + bladder microvascular endothelial cell + + + + + Any microvascular endothelial cell that is part of a urinary bladder. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any dermis lymphatic vessel endothelial cell that is part of a microvascular endothelium. + TermGenie + 2014-07-09T00:09:54Z + cell + CL:2000041 + dermis microvascular lymphatic vessel endothelial cell + + + + + Any dermis lymphatic vessel endothelial cell that is part of a microvascular endothelium. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a embryo. + TermGenie + 2014-07-09T00:12:00Z + cell + CL:2000042 + embryonic fibroblast + + + + + Any fibroblast that is part of a embryo. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any pericyte cell that is part of a brain. + TermGenie + 2014-07-09T00:18:22Z + cell + CL:2000043 + brain pericyte + + + + + Any pericyte cell that is part of a brain. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a brain. + TermGenie + 2014-07-09T00:24:53Z + cell + CL:2000044 + brain microvascular endothelial cell + + + + + Any microvascular endothelial cell that is part of a brain. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any melanocyte that is part of a prepuce of penis. + TermGenie + 2014-07-09T00:45:07Z + cell + CL:2000045 + foreskin melanocyte + + + + + Any melanocyte that is part of a prepuce of penis. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any cardiac muscle cell that is part of a cardiac ventricle. + TermGenie + 2014-08-12T20:50:28Z + cell + CL:2000046 + ventricular cardiac muscle cell + + + + + Any cardiac muscle cell that is part of a cardiac ventricle. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any motor neuron that is part of a brainstem. + TermGenie + 2014-10-02T23:52:53Z + cell + CL:2000047 + brainstem motor neuron + + + + + Any motor neuron that is part of a brainstem. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any spinal cord motor neuron that is part of a ventral horn of spinal cord. + TermGenie + 2014-10-03T00:26:27Z + cell + CL:2000048 + ventral horn of spinal cord spinal cord motor neuron + + + + + Any spinal cord motor neuron that is part of a ventral horn of spinal cord. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any pyramidal cell that is part of a primary motor cortex. + TermGenie + 2014-10-06T17:39:04Z + cell + CL:2000049 + http://www.ncbi.nlm.nih.gov/pubmed/12524689 + primary motor cortex pyramidal cell + + + + + Any pyramidal cell that is part of a primary motor cortex. + GOC:TermGenie + + + + + + + + Any retinal ganglion cell that is part of a retina. + TermGenie + 2014-10-06T17:43:59Z + cell + CL:2000050 + http://www.ncbi.nlm.nih.gov/pubmed/2889210 + obsolete retina retinal ganglion cell + true + + + + + Any retinal ganglion cell that is part of a retina. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a spleen. + TermGenie + 2014-10-06T18:58:47Z + cell + CL:2000051 + splenic fibroblast + + + + + Any fibroblast that is part of a spleen. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any endothelial cell of artery that is part of a umbilical cord. + TermGenie + 2014-10-06T19:01:48Z + cell + CL:2000052 + http://www.sciencellonline.com/site/productInformation.php?keyword=8010 + umbilical artery endothelial cell + + + + + Any endothelial cell of artery that is part of a umbilical cord. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any endothelial cell that is part of a spleen. + TermGenie + 2014-10-06T19:06:04Z + cell + CL:2000053 + http://www.sciencellonline.com/site/productInformation.php?keyword=5500 + splenic endothelial cell + + + + + Any endothelial cell that is part of a spleen. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + A large, granular, liver specific natural killer cell that adheres to the endothelial cells of the hepatic sinusoid. + 2014-10-06T19:08:51Z + cell + CL:2000054 + Pit cells are named for the presence of large cytoplasmic granules that resemble pits (pips) of fruit. + hepatic pit cell + + + + + A large, granular, liver specific natural killer cell that adheres to the endothelial cells of the hepatic sinusoid. + GOC:dos + PMID:9408963 + + + + + + + + + + + + + + + + + + + Any dendritic cell that is part of a liver. + TermGenie + 2014-10-06T19:16:11Z + cell + CL:2000055 + http://www.jleukbio.org/content/66/2/322.abstract + liver dendritic cell + + + + + Any dendritic cell that is part of a liver. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any pyramidal cell that is part of a regional part of cerebral cortex. + TermGenie + 2014-10-06T19:20:41Z + cell + CL:2000056 + Meynert cell + + + + + Any pyramidal cell that is part of a regional part of cerebral cortex. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any osteoblast that is part of a femur. + TermGenie + 2014-10-06T19:29:45Z + cell + CL:2000057 + http://www.sciencellonline.com/site/productInformation.php?keyword=4610 + femural osteoblast + + + + + Any osteoblast that is part of a femur. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any osteoblast that is part of a skull. + TermGenie + 2014-10-06T19:48:30Z + cell + CL:2000058 + http://www.sciencellonline.com/site/productInformation.php?keyword=4600 + calvarial osteoblast + + + + + Any osteoblast that is part of a skull. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a prostate gland. + TermGenie + 2014-10-07T17:46:27Z + cell + CL:2000059 + http://www.sciencellonline.com/site/productInformation.php?keyword=4400 + prostate gland microvascular endothelial cell + + + + + Any microvascular endothelial cell that is part of a prostate gland. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any trophoblast cell that is part of a placenta. + TermGenie + 2014-10-07T17:48:27Z + cell + CL:2000060 + http://www.sciencellonline.com/site/productInformation.php?keyword=7120 + placental villous trophoblast + + + + + Any trophoblast cell that is part of a placenta. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any mesenchymal stem cell that is part of a placenta. + TermGenie + 2014-10-07T17:51:11Z + cell + CL:2000061 + http://www.sciencellonline.com/site/productInformation.php?keyword=7140 + placental amniotic mesenchymal stromal cell + + + + + Any mesenchymal stem cell that is part of a placenta. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any capillary endothelial cell that is part of a placenta. + TermGenie + 2014-10-07T17:55:56Z + cell + CL:2000062 + http://www.ncbi.nlm.nih.gov/books/NBK53245/ + placental villus capillary endothelial cell + + + + + Any capillary endothelial cell that is part of a placenta. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a female gonad. + TermGenie + 2014-10-07T17:57:42Z + cell + CL:2000063 + http://www.sciencellonline.com/site/productInformation.php?keyword=7330 + ovarian fibroblast + + + + + Any fibroblast that is part of a female gonad. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any epithelial cell that is part of a female gonad. + TermGenie + 2014-10-07T17:59:13Z + cell + CL:2000064 + http://www.sciencellonline.com/site/productInformation.php?keyword=7310 + ovarian surface epithelial cell + + + + + Any epithelial cell that is part of a female gonad. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a female urethra. + TermGenie + 2014-10-07T18:18:01Z + cell + CL:2000065 + http://www.sciencellonline.com/site/productInformation.php?keyword=7300 + ovarian microvascular endothelial cell + + + + + Any microvascular endothelial cell that is part of a female urethra. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a cardiac ventricle. + TermGenie + 2014-10-07T18:35:38Z + cell + CL:2000066 + http://www.sciencellonline.com/site/productInformation.php?keyword=6310 + cardiac ventricle fibroblast + + + + + Any fibroblast that is part of a cardiac ventricle. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a cardiac atrium. + TermGenie + 2014-10-07T18:36:54Z + cell + CL:2000067 + http://www.sciencellonline.com/site/productInformation.php?keyword=6320 + cardiac atrium fibroblast + + + + + Any fibroblast that is part of a cardiac atrium. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a pericardium. + TermGenie + 2014-10-07T18:38:06Z + cell + CL:2000068 + http://www.sciencellonline.com/site/productInformation.php?keyword=6430 + pericardium fibroblast + + + + + Any fibroblast that is part of a pericardium. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a gallbladder. + TermGenie + 2014-10-07T18:41:43Z + cell + CL:2000069 + http://www.sciencellonline.com/site/productInformation.php?keyword=5430 + gallbladder fibroblast + + + + + Any fibroblast that is part of a gallbladder. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a optic choroid. + TermGenie + 2014-10-07T18:50:43Z + cell + CL:2000070 + http://www.sciencellonline.com/site/productInformation.php?keyword=6620 + optic choroid fibroblast + + + + + Any fibroblast that is part of a optic choroid. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a breast. + TermGenie + 2014-10-07T19:55:30Z + cell + CL:2000071 + http://www.sciencellonline.com/site/productInformation.php?keyword=7600 + mammary microvascular endothelial cell + + + + + Any microvascular endothelial cell that is part of a breast. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a adipose tissue. + TermGenie + 2014-10-07T22:13:45Z + cell + CL:2000072 + http://www.sciencellonline.com/site/productInformation.php?keyword=7200 + adipose microvascular endothelial cell + + + + + Any microvascular endothelial cell that is part of a adipose tissue. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any migratory neural crest cell that is part of a cardiac neural crest. + TermGenie + 2014-11-05T01:18:43Z + cell + CL:2000073 + migratory cardiac neural crest cell + + + + + Any migratory neural crest cell that is part of a cardiac neural crest. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any leukocyte that is part of a spleen. + TermGenie + 2014-11-05T01:26:50Z + cell + CL:2000074 + Splenocytes is a vague term that refers to any one of the different white blood cell types in the spleen. This name is seen many references as such and is not explained further, necessitating a need for this terminology. + splenocyte + + + + + Any leukocyte that is part of a spleen. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any endodermal cell that is part of a anterior visceral endoderm. + TermGenie + 2014-11-05T01:34:13Z + cell + CL:2000075 + anterior visceral endoderm cell + + + + + Any endodermal cell that is part of a anterior visceral endoderm. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any vein endothelial cell that is part of a hindlimb stylopod. + TermGenie + 2014-12-02T18:40:47Z + cell + CL:2000076 + hindlimb stylopod vein endothelial cell + + + + + Any vein endothelial cell that is part of a hindlimb stylopod. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any striated muscle cell that is part of a skeletal muscle tissue of pectoralis major. + TermGenie + 2014-12-02T18:48:17Z + cell + CL:2000077 + skeletal muscle tissue of pectoralis major striated muscle cell + + + + + Any striated muscle cell that is part of a skeletal muscle tissue of pectoralis major. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any pericyte cell that is part of a placenta. + TermGenie + 2014-12-02T18:51:03Z + cell + CL:2000078 + placental pericyte + + + + + Any pericyte cell that is part of a placenta. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any mesenchymal stem cell of the bone marrow that is part of a femur. + TermGenie + 2014-12-02T19:07:31Z + cell + CL:2000079 + mesenchymal stem cell of femoral bone marrow + + + + + Any mesenchymal stem cell of the bone marrow that is part of a femur. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any mesenchymal stem cell of adipose that is part of a abdomen. + TermGenie + 2014-12-02T19:10:34Z + cell + CL:2000080 + mesenchymal stem cell of abdominal adipose + + + + + Any mesenchymal stem cell of adipose that is part of a abdomen. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any melanocyte of skin that is part of a skin of face. + TermGenie + 2014-12-02T19:10:40Z + cell + CL:2000081 + melanocyte of skin of face + + + + + Any melanocyte of skin that is part of a skin of face. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any melanocyte of skin that is part of a skin of prepuce of penis. + TermGenie + 2014-12-02T19:10:45Z + cell + CL:2000082 + melanocyte of foreskin + + + + + Any melanocyte of skin that is part of a skin of prepuce of penis. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any hair follicle dermal papilla cell that is part of a scalp. + TermGenie + 2014-12-02T19:10:50Z + cell + CL:2000083 + hair follicle dermal papilla cell of scalp + + + + + Any hair follicle dermal papilla cell that is part of a scalp. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any goblet cell that is part of a conjunctiva. + TermGenie + 2014-12-02T19:28:38Z + cell + CL:2000084 + conjunctiva goblet cell + + + + + Any goblet cell that is part of a conjunctiva. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any mononuclear cell that is part of a umbilical cord. + TermGenie + 2014-12-02T20:14:16Z + cell + CL:2000085 + mononuclear cell of umbilical cord + + + + + Any mononuclear cell that is part of a umbilical cord. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any basket cell that is part of a neocortex. + TermGenie + 2014-12-24T00:37:19Z + cell + CL:2000086 + neocortex basket cell + + + + + Any basket cell that is part of a neocortex. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any basket cell that is part of a dentate gyrus of hippocampal formation. + TermGenie + 2014-12-24T00:37:24Z + cell + CL:2000087 + dentate gyrus of hippocampal formation basket cell + + + + + Any basket cell that is part of a dentate gyrus of hippocampal formation. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any basket cell that is part of a Ammon's horn. + TermGenie + 2014-12-24T00:37:30Z + cell + CL:2000088 + Ammon's horn basket cell + + + + + Any basket cell that is part of a Ammon's horn. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + The principal cell type of the dentate gyrus. + TermGenie + 2015-02-23T05:48:23Z + cell + CL:2000089 + The granule cell has a characteristic cone-shaped tree of spiny apical dendrites. + dentate gyrus of hippocampal formation granule cell + + + + + The principal cell type of the dentate gyrus. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any stellate cell that is part of a dentate gyrus of hippocampal formation. + TermGenie + 2015-02-23T05:48:40Z + cell + CL:2000090 + dentate gyrus of hippocampal formation stellate cell + + + + + Any stellate cell that is part of a dentate gyrus of hippocampal formation. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any microvascular endothelial cell that is part of a endometrial blood vessel. + TermGenie + 2015-03-31T21:02:36Z + cell + CL:2000091 + endometrial microvascular endothelial cells + + + + + Any microvascular endothelial cell that is part of a endometrial blood vessel. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any keratinocyte that is part of a hair follicle. + TermGenie + 2015-03-31T21:07:02Z + cell + CL:2000092 + hair follicular keratinocyte + + + + + Any keratinocyte that is part of a hair follicle. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast of lung that is part of a bronchus. + TermGenie + 2015-03-31T21:16:22Z + cell + CL:2000093 + bronchus fibroblast of lung + + + + + Any fibroblast of lung that is part of a bronchus. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any epithelial cell of viscerocranial mucosa that is part of a nasal cavity respiratory epithelium. + TermGenie + 2015-03-31T22:25:17Z + cell + CL:2000094 + nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa + + + + + Any epithelial cell of viscerocranial mucosa that is part of a nasal cavity respiratory epithelium. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any hematopoietic stem cell that is part of a umbilical cord blood. + TermGenie + 2015-05-26T18:58:34Z + cell + CL:2000095 + cord blood hematopoietic stem cell + + + + + Any hematopoietic stem cell that is part of a umbilical cord blood. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any fibroblast that is part of a reticular layer of dermis. + TermGenie + 2015-08-11T16:28:16Z + cell + CL:2000096 + reticular layer of dermis fibroblast + + + + + Any fibroblast that is part of a reticular layer of dermis. + GOC:TermGenie + + + + + + + + + + + + + + + + + + + Any dopaminergic neuron that is part of a midbrain. + TermGenie + 2015-12-03T16:42:40Z + cell + CL:2000097 + midbrain dopaminergic neuron + + + + + Any dopaminergic neuron that is part of a midbrain. + GOC:TermGenie + + + + + + + + + Cytoplasm that exhibits molecular interaction for acidic dyes under specific pH conditions. + tmeehan + 2010-05-25T01:36:34Z + cell + neutrophillic cytoplasm + + + + + Cytoplasm that exhibits molecular interaction for acidic dyes under specific pH conditions. + GOC:tfm + + + + + + + + + + + + + + + + + + + + Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin. + tmeehan + 2009-12-22T03:54:43Z + cell + lobed nucleus + + + + + Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin. + GOC:tfm + + + + + + + + + Cytoplasm that exhibits molecular interaction for acidic dyes under specific pH conditions. + tmeehan + 2009-12-22T04:23:25Z + eosinophilic + cell + acidophilic cytoplasm + + + + + Cytoplasm that exhibits molecular interaction for acidic dyes under specific pH conditions. + GOC:tfm + + + + + + + + + + + + + + + + + + + + Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions. + tmeehan + 2009-12-22T04:24:54Z + cell + basophilic cytoplasm + + + + + Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions. + GOC:tfm + + + + + + + + + Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions. + tmeehan + 2009-12-28T04:25:23Z + cell + polychromatophilic cytoplasm + + + + + Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell. + tmeehan + 2009-12-23T10:53:24Z + cell + increased nucleus size + + + + + A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell. + GOC:tfm + + + + + + + + + A concave nuclear shape where the nucleus is indented to more than half the distance to the farthest nuclear margin, but in no area is the chromatin condensed to a single filament. + tmeehan + 2009-12-23T02:18:43Z + cell + banded nucleus + + + + + A concave nuclear shape where the nucleus is indented to more than half the distance to the farthest nuclear margin, but in no area is the chromatin condensed to a single filament. + GOC:tfm + + + + + + + + + + + + + + + + + + + + A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin. + tmeehan + 2009-12-23T02:31:25Z + cell + reniform nucleus + + + + + A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin. + GOC:tfm + + + + + + + + + Heterochromatin that is arranged in a carthwheel pattern. + tmeehan + 2009-12-28T04:28:35Z + cell + cartwheel heterochromatin + + + + + Heterochromatin that is arranged in a carthwheel pattern. + GOC:tfm + + + + + + + + + + + + + + + + + + + + alobate nucleus + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + interleukin-5 production + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + To be added to GO + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + structure + + + + + + + + + abnormal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + neoplastic + + + + + + + + + + + + + + + + + + + + + neoplastic, malignant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/cl-basic.obo b/cl-basic.obo index 15f42de59..06337e554 100644 --- a/cl-basic.obo +++ b/cl-basic.obo @@ -3,9 +3,18 @@ subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful fo synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: LATIN "latin term" synonymtypedef: PLURAL "plural term" -remark: See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. ontology: cl/cl-basic +property_value: http://purl.org/dc/elements/1.1/contributor "Alexander Diehl" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Ceri van Slyke" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Jim Balhoff" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Melissa Haendel" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Nicole Vasilevsky" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Terry Meehan" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Yvonne Bradford" xsd:string property_value: http://purl.org/dc/elements/1.1/license http://creativecommons.org/licenses/by/4.0/ +property_value: seeAlso http://obofoundry.org/ontology/cl.html [Term] id: CL:0000000 @@ -22395,10 +22404,3 @@ id: lacks_plasma_membrane_part name: lacks_plasma_membrane_part expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" [] -[Typedef] -id: seeAlso -name: see also -namespace: uberon -xref: http://www.w3.org/2000/01/rdf-schema#seeAlso -is_metadata_tag: true - diff --git a/cl-basic.owl b/cl-basic.owl index 408f2c17d..eeb6c87ee 100644 --- a/cl-basic.owl +++ b/cl-basic.owl @@ -1,19 +1,28 @@ + xmlns:obo="http://purl.obolibrary.org/obo/" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + Chris Mungall - See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. + Ceri van Slyke + Melissa Haendel + Terry Meehan + Yvonne Bradford + + David Osumi-Sutherland + Nicole Vasilevsky + Jim Balhoff + Alexander Diehl @@ -314,13 +323,7 @@ - - http://www.w3.org/2000/01/rdf-schema#seeAlso - uberon - true - seeAlso - see also - + @@ -47723,5 +47726,5 @@ plexiform layer using GABA. - + diff --git a/cl.obo b/cl.obo index 1d4a97dbc..89d5bc38e 100644 --- a/cl.obo +++ b/cl.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2017-12-11 +data-version: releases/2018-07-07 subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis" synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: LATIN "latin term" @@ -11,11 +11,19 @@ remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 187 Logical Axioms: 65] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 2196 Logical Axioms: 219] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 387 Logical Axioms: 156] -remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 28411 Logical Axioms: 9571] -remark: See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 28449 Logical Axioms: 9573] ontology: cl +property_value: http://purl.org/dc/elements/1.1/contributor "Alexander Diehl" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Ceri van Slyke" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Jim Balhoff" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Melissa Haendel" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Nicole Vasilevsky" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Terry Meehan" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Yvonne Bradford" xsd:string property_value: http://purl.org/dc/elements/1.1/license http://creativecommons.org/licenses/by/4.0/ -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\n############################\n# Object Properties\n############################\n\n# Object Property: (synapsed by)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n\n############################\n# Classes\n############################\n\n# Class: (cholinergic neuron)\n\nEquivalentClasses( ObjectSomeValuesFrom( ))\n\n# Class: (ILC1)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectComplementOf(ObjectSomeValuesFrom( ))))\n\n# Class: (smooth muscle cell of the brain vasculature)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (compound eye retinal cell)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (magnocellular neurosecretory cell)\n\nSubClassOf( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\n\n# Class: (gastric cardiac gland goblet cell)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (large intestine crypt goblet cell)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (pylroric gastric gland goblet cell)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (jejunal goblet cell)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (ileal goblet cell)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (appendix goblet cell)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (cholangiocyte)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (cardiac neural crest)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (mouth)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (scalp)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (organism subdivision)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (humerus)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (sensory system)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (hepatic acinus)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (umbilical artery)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (anal region)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (hip)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (shoulder)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (muscle of shoulder)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (subclavian artery)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (temporal bone)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (jaw skeleton)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (optic choroid)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (mucosa-associated lymphoid tissue)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (bronchial-associated lymphoid tissue)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (hindbrain)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (umbilical vein)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (hair follicle)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (appendicular skeleton)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (liver)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (chondrocranium)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (extraglomerular mesangium)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (tympanic membrane)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (lateral line system)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (midbrain-hindbrain boundary)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (surface structure)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (skeleton of lower jaw)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (shoulder bone)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (thymus corticomedullary boundary)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (pharyngeal pouch)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (large intestine smooth muscle)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (intestine smooth muscle)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (small intestine smooth muscle)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (allantois)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (entire sense organ system)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (musculature of hip)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (musculature of shoulder)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (splanchnopleure)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (somatopleure)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (tela choroidea)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (1st arch pharyngeal cleft)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (2nd arch pharyngeal cleft)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (pharyngeal cleft)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (eye trabecular meshwork)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (buccopharyngeal membrane)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (foregut-midgut junction)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (mouth-foregut junction)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (pharyngeal pouch 1)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (pharyngeal pouch 2)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (nucleus of midbrain tegmentum)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (bone of hip region)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (pharyngeal membrane)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (pharyngeal membrane of 1st arch)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (medullary ray)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (collection of basal ganglia)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (umbilical blood vessel)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (nasal-associated lymphoid tissue)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (extraembryonic venous system)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\n\n# Class: (extraembryonic vascular system)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (skin appendage follicle)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectComplementOf(ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\n) +property_value: seeAlso http://obofoundry.org/ontology/cl.html [Term] id: BFO:0000002 @@ -39896,7 +39904,6 @@ synonym: "cervix of uterus" RELATED [] synonym: "cervix uteri" EXACT [] synonym: "neck of uterus" EXACT [] synonym: "uterine cervix" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus @@ -39946,9 +39953,9 @@ is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010133 ! neuroendocrine gland is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0034875 ! future pituitary gland relationship: has_part UBERON:0002196 ! adenohypophysis relationship: has_part UBERON:0002198 ! neurohypophysis +relationship: immediate_transformation_of UBERON:0034875 ! future pituitary gland relationship: part_of UBERON:0001894 ! diencephalon [Term] @@ -39972,7 +39979,6 @@ def: "A major division of the nervous system that contains nerves which connect synonym: "pars peripherica" EXACT [] synonym: "PNS" BROAD [] synonym: "systema nervosum periphericum" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system @@ -40050,7 +40056,6 @@ synonym: "Facettenauge" RELATED [] synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [] synonym: "zusammengesetztes Auge" RELATED [] -is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0015165 ! multi-unit eye relationship: has_part UBERON:0000971 ! ommatidium @@ -40242,11 +40247,10 @@ name: ganglion def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [] synonym: "ganglia" RELATED [] synonym: "neural ganglion" RELATED [] -is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0010001 ! cell cluster organ disjoint_from: UBERON:0002420 ! basal ganglion -relationship: develops_from UBERON:0003869 ! presumptive ganglion relationship: has_part UBERON:0003714 ! neural tissue +relationship: immediate_transformation_of UBERON:0003869 ! presumptive ganglion relationship: part_of UBERON:0001016 ! nervous system [Term] @@ -40316,6 +40320,7 @@ id: UBERON:0000059 name: large intestine def: "A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]." [] synonym: "intestinum crassum" RELATED [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000160 ! intestine @@ -40698,7 +40703,6 @@ is_a: UBERON:0000957 ! lamina id: UBERON:0000121 name: perineurium def: "A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition)" [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0011822 ! dense irregular connective tissue relationship: part_of UBERON:0001019 ! nerve fasciculus @@ -40903,8 +40907,8 @@ synonym: "vertebrate blood" EXACT [] synonym: "whole blood" RELATED [] is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0000179 ! haemolymphatic fluid -relationship: develops_from UBERON:0006596 ! presumptive blood relationship: has_part UBERON:0001969 ! blood plasma +relationship: immediate_transformation_of UBERON:0006596 ! presumptive blood relationship: part_of UBERON:0002390 ! hematopoietic system [Term] @@ -41575,7 +41579,6 @@ is_a: UBERON:0000463 ! organism substance id: UBERON:0000458 name: endocervix def: "1. The mucous membrane lining the canal of the cervix uteri. 2. The region of the opening of the uterine cervix into the uterine cavity." [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: has_part UBERON:0000485 ! simple columnar epithelium @@ -41893,7 +41896,7 @@ name: ectoderm def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [] synonym: "embryonic ectoderm" EXACT [] is_a: UBERON:0000923 ! germ layer -relationship: develops_from UBERON:0006601 ! presumptive ectoderm +relationship: immediate_transformation_of UBERON:0006601 ! presumptive ectoderm [Term] id: UBERON:0000925 @@ -41901,7 +41904,7 @@ name: endoderm def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [] synonym: "entoderm" RELATED [] is_a: UBERON:0000923 ! germ layer -relationship: develops_from UBERON:0006595 ! presumptive endoderm +relationship: immediate_transformation_of UBERON:0006595 ! presumptive endoderm [Term] id: UBERON:0000926 @@ -41911,7 +41914,7 @@ synonym: "embryonic mesoderm" RELATED [] synonym: "entire mesoderm" RELATED [] synonym: "mesodermal mantle" RELATED [] is_a: UBERON:0000923 ! germ layer -relationship: develops_from UBERON:0006603 ! presumptive mesoderm +relationship: immediate_transformation_of UBERON:0006603 ! presumptive mesoderm [Term] id: UBERON:0000930 @@ -42012,7 +42015,7 @@ synonym: "synganglion" RELATED [] synonym: "the brain" RELATED [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: develops_from UBERON:0006238 ! future brain +relationship: immediate_transformation_of UBERON:0006238 ! future brain relationship: part_of UBERON:0000468 ! multicellular organism relationship: part_of UBERON:0001017 ! central nervous system @@ -42307,9 +42310,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0000995 name: uterus def: "the female muscular organ of gestation in which the developing embryo or fetus is nourished until birth" [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0013515 ! subdivision of oviduct -relationship: develops_from UBERON:0005795 ! embryonic uterus +relationship: immediate_transformation_of UBERON:0005795 ! embryonic uterus relationship: part_of UBERON:0004175 ! internal genitalia [Term] @@ -42495,7 +42497,6 @@ def: "The nervous system is an organ system containing predominantly neuron and synonym: "nerve net" NARROW [] synonym: "neurological system" EXACT [] synonym: "systema nervosum" RELATED [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system @@ -42507,7 +42508,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: develops_from UBERON:0016880 ! future nervous system +relationship: immediate_transformation_of UBERON:0016880 ! future nervous system [Term] id: UBERON:0001017 @@ -42519,7 +42520,7 @@ synonym: "neuraxis" RELATED [] synonym: "systema nervosum centrale" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: develops_from UBERON:0016879 ! future central nervous system +relationship: immediate_transformation_of UBERON:0016879 ! future central nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] @@ -42630,6 +42631,7 @@ name: esophagus def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [] synonym: "gullet" EXACT [] synonym: "oesophagus" EXACT [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000062 ! organ is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity element @@ -42692,6 +42694,7 @@ synonym: "intestinum rectum" RELATED [] synonym: "rectal sac" RELATED [] synonym: "terminal portion of intestine" EXACT [] synonym: "terminal portion of large intestine" RELATED [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0006866 ! terminal part of digestive tract @@ -42849,8 +42852,8 @@ synonym: "vertebrate tooth" EXACT [] is_a: UBERON:0003913 ! tooth-like structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0008281 ! tooth bud relationship: has_part UBERON:0001751 ! dentine +relationship: immediate_transformation_of UBERON:0008281 ! tooth bud [Term] id: UBERON:0001096 @@ -43021,6 +43024,7 @@ synonym: "cecum" EXACT [] synonym: "intestinum caecum" RELATED [] synonym: "intestinum crassum caecum" EXACT [] synonym: "intestinum crassum cecum" RELATED [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0009854 ! digestive tract diverticulum relationship: develops_from UBERON:0001045 ! midgut relationship: part_of UBERON:0000059 ! large intestine @@ -43051,6 +43055,7 @@ def: "Last portion of the large intestine before it becomes the rectum." [] synonym: "hindgut" RELATED [] synonym: "large bowel" EXACT [] synonym: "posterior intestine" NARROW [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0000059 ! large intestine @@ -43101,7 +43106,6 @@ synonym: "fundus ventricularis" RELATED [] synonym: "fundus ventriculi" RELATED [] synonym: "gastric fundus" EXACT [] synonym: "stomach fundus" EXACT [] -is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0009870 ! zone of stomach relationship: has_part UBERON:0010038 ! fundic gastric gland @@ -44166,6 +44170,7 @@ synonym: "epithelial tissue of large intestine" EXACT [] synonym: "large intestinal epithelium" EXACT [] synonym: "large intestine epithelial tissue" EXACT [] synonym: "large intestine epithelium" EXACT [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000059 ! large intestine @@ -44245,7 +44250,7 @@ synonym: "tubulus renalis" RELATED [] is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0004208 ! nephrogenic mesenchyme -relationship: develops_from UBERON:0010532 ! primitive nephron +relationship: immediate_transformation_of UBERON:0010532 ! primitive nephron relationship: part_of UBERON:0007684 ! uriniferous tubule [Term] @@ -44378,7 +44383,6 @@ synonym: "tunica mucosa uteri" EXACT [] synonym: "uterine endometrium" EXACT [] synonym: "uterine mucosa" RELATED [] synonym: "uterine mucous membrane" RELATED [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000995 ! uterus @@ -45432,9 +45436,8 @@ synonym: "digestive tube" EXACT [] synonym: "enteric tract" EXACT [] synonym: "gut" BROAD [] synonym: "gut tube" RELATED [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000025 ! tube -relationship: develops_from UBERON:0007026 ! presumptive gut +relationship: immediate_transformation_of UBERON:0007026 ! presumptive gut relationship: part_of UBERON:0001007 ! digestive system [Term] @@ -45477,7 +45480,7 @@ def: "A muscle organ that attaches the tongue to some other structure." [] synonym: "extrinsic lingual muscle" EXACT [] synonym: "extrinsic tongue muscle" EXACT [] is_a: UBERON:0000378 ! tongue muscle -relationship: develops_from UBERON:0011332 ! extrinsic tongue pre-muscle mass +relationship: immediate_transformation_of UBERON:0011332 ! extrinsic tongue pre-muscle mass [Term] id: UBERON:0001576 @@ -45766,7 +45769,7 @@ is_a: UBERON:0000020 ! sense organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0008814 ! pharyngeal arch system -relationship: develops_from UBERON:0010056 ! future tongue +relationship: immediate_transformation_of UBERON:0010056 ! future tongue relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001033 ! gustatory system @@ -46227,7 +46230,9 @@ synonym: "stratum pigmentosum retinae" EXACT [] is_a: UBERON:0000957 ! lamina is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0015808 ! eye epithelium -relationship: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium +relationship: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium [Term] id: UBERON:0001785 @@ -46705,7 +46710,7 @@ synonym: "FB" BROAD [] synonym: "prosencephalon" RELATED [] is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0003080 ! anterior neural tube -relationship: develops_from UBERON:0006240 ! future forebrain +relationship: immediate_transformation_of UBERON:0006240 ! future forebrain [Term] id: UBERON:0001891 @@ -46715,7 +46720,7 @@ synonym: "MB" BROAD [] synonym: "mesencephalon" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0009616 ! presumptive midbrain +relationship: immediate_transformation_of UBERON:0009616 ! presumptive midbrain [Term] id: UBERON:0001892 @@ -46742,7 +46747,7 @@ synonym: "endbrain" EXACT [] synonym: "supratentorial region" BROAD [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0014371 ! future telencephalon +relationship: immediate_transformation_of UBERON:0014371 ! future telencephalon relationship: part_of UBERON:0001890 ! forebrain [Term] @@ -46758,7 +46763,7 @@ synonym: "mature diencephalon" EXACT [] synonym: "thalamencephalon" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0006222 ! future diencephalon +relationship: immediate_transformation_of UBERON:0006222 ! future diencephalon relationship: part_of UBERON:0001890 ! forebrain [Term] @@ -46768,7 +46773,7 @@ def: "Rostral segment of the hindbrain that has as its parts the pons (where pre synonym: "epencephalon" BROAD [] synonym: "epencephalon-2" EXACT [] is_a: UBERON:0004733 ! segmental subdivision of hindbrain -relationship: develops_from UBERON:0010092 ! future metencephalon +relationship: immediate_transformation_of UBERON:0010092 ! future metencephalon [Term] id: UBERON:0001896 @@ -47194,7 +47199,6 @@ name: gut-associated lymphoid tissue def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [] synonym: "GALT" RELATED [] synonym: "gut associated lymphoid tissue" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: part_of UBERON:0001555 ! digestive tract @@ -47312,6 +47316,7 @@ synonym: "gullet epithelial tissue" EXACT [] synonym: "gullet epithelium" EXACT [] synonym: "oesophagus epithelial tissue" EXACT [] synonym: "oesophagus epithelium" RELATED [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium @@ -47523,7 +47528,7 @@ is_a: UBERON:0006934 ! sensory epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0006934 ! sensory epithelium intersection_of: part_of UBERON:0005386 ! olfactory segment of nasal mucosa -relationship: develops_from UBERON:2001431 ! primitive olfactory epithelium +relationship: immediate_transformation_of UBERON:2001431 ! primitive olfactory epithelium relationship: part_of UBERON:0000012 ! somatic nervous system relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa @@ -47699,9 +47704,10 @@ id: UBERON:0002028 name: hindbrain def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [] synonym: "rhombencephalon" RELATED [] +is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0007277 ! presumptive hindbrain +relationship: immediate_transformation_of UBERON:0007277 ! presumptive hindbrain relationship: part_of UBERON:0000955 ! brain [Term] @@ -47937,9 +47943,9 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013754 ! integumentary system layer -relationship: develops_from UBERON:0010083 ! future dermis relationship: has_part UBERON:0002384 ! connective tissue relationship: has_part UBERON:0011860 ! collection of collagen fibrils +relationship: immediate_transformation_of UBERON:0010083 ! future dermis relationship: part_of UBERON:0002097 ! skin of body [Term] @@ -48047,7 +48053,7 @@ synonym: "atrium of heart" EXACT [] synonym: "cardiac atria" EXACT [] synonym: "heart atrium" EXACT [] is_a: UBERON:0004151 ! cardiac chamber -relationship: develops_from UBERON:0010227 ! future cardiac atrium +relationship: immediate_transformation_of UBERON:0010227 ! future cardiac atrium [Term] id: UBERON:0002082 @@ -48058,7 +48064,7 @@ synonym: "lower chamber of heart" EXACT [] synonym: "ventricle" BROAD [] synonym: "ventricle of heart" EXACT [] is_a: UBERON:0004151 ! cardiac chamber -relationship: develops_from UBERON:0006283 ! future cardiac ventricle +relationship: immediate_transformation_of UBERON:0006283 ! future cardiac ventricle [Term] id: UBERON:0002084 @@ -48418,6 +48424,7 @@ def: "the portion of the small intestine that extends from the duodenum to the i synonym: "intestinum jejunum" RELATED [] synonym: "mid-intestine" RELATED [] synonym: "middle intestine" RELATED [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001045 ! midgut relationship: part_of UBERON:0002108 ! small intestine @@ -48522,8 +48529,8 @@ synonym: "heart endocardial tissue" RELATED [] synonym: "heart endocardium" EXACT [] is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! heart layer -relationship: develops_from UBERON:0007280 ! presumptive endocardium relationship: has_part UBERON:0005316 ! endocardial endothelium +relationship: immediate_transformation_of UBERON:0007280 ! presumptive endocardium [Term] id: UBERON:0002166 @@ -48954,7 +48961,7 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0003076 ! posterior neural tube -relationship: develops_from UBERON:0006241 ! future spinal cord +relationship: immediate_transformation_of UBERON:0006241 ! future spinal cord relationship: part_of UBERON:0001017 ! central nervous system [Term] @@ -49206,6 +49213,7 @@ synonym: "lamina medullaris incompleta pallidi" RELATED [] synonym: "lamina pallidi incompleta" RELATED [] synonym: "truncus encephali" EXACT [] synonym: "truncus encephalicus" RELATED [] +is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest @@ -49785,7 +49793,7 @@ synonym: "meninx primitiva" NARROW [] is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0007645 ! future meninx +relationship: immediate_transformation_of UBERON:0007645 ! future meninx relationship: part_of UBERON:0010743 ! meningeal cluster [Term] @@ -49796,7 +49804,7 @@ synonym: "dura" RELATED [] synonym: "dura mater of neuraxis" EXACT [] synonym: "pachymeninges" EXACT [] is_a: UBERON:0002360 ! meninx -relationship: develops_from UBERON:0007647 ! ectomeninx +relationship: immediate_transformation_of UBERON:0007647 ! ectomeninx [Term] id: UBERON:0002364 @@ -49920,6 +49928,7 @@ id: UBERON:0002372 name: tonsil def: "either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx" [] synonym: "Mandel" RELATED [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue is_a: UBERON:0001962 ! gut-associated lymphoid tissue relationship: part_of UBERON:0001735 ! tonsillar ring @@ -50213,7 +50222,6 @@ synonym: "divisio autonomica systematis nervosi peripherici" RELATED [] synonym: "pars autonomica systematis nervosi peripherici" EXACT [] synonym: "peripheral autonomic nervous system" EXACT [] synonym: "visceral nervous system" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0000010 ! peripheral nervous system @@ -50352,6 +50360,7 @@ name: oral epithelium def: "An epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues" [] synonym: "epithelium of mucosa of mouth" EXACT [] synonym: "epithelium of oral mucosa" EXACT [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium @@ -51040,7 +51049,7 @@ synonym: "midbrain hindbrain boundary" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate +relationship: immediate_transformation_of UBERON:0009615 ! midbrain hindbrain boundary neural plate relationship: part_of UBERON:0000955 ! brain [Term] @@ -51087,9 +51096,8 @@ synonym: "somitogenic mesoderm" RELATED [] synonym: "somitomeric mesoderm" RELATED [] synonym: "unsegmented mesenchyme" RELATED [] synonym: "unsegmented paraxial mesoderm" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0006598 ! presumptive structure -relationship: develops_from UBERON:0007282 ! presumptive segmental plate +relationship: immediate_transformation_of UBERON:0007282 ! presumptive segmental plate relationship: part_of UBERON:0003077 ! paraxial mesoderm [Term] @@ -51260,7 +51268,7 @@ is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system -relationship: develops_from UBERON:0007284 ! presumptive neural plate +relationship: immediate_transformation_of UBERON:0007284 ! presumptive neural plate [Term] id: UBERON:0003076 @@ -51280,7 +51288,7 @@ synonym: "somitic mesoderm" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0015212 ! lateral structure -relationship: develops_from UBERON:0007285 ! presumptive paraxial mesoderm +relationship: immediate_transformation_of UBERON:0007285 ! presumptive paraxial mesoderm relationship: part_of UBERON:0000922 ! embryo [Term] @@ -52193,7 +52201,7 @@ synonym: "rhomencephalon meninges" RELATED [] is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0002028 ! hindbrain -relationship: develops_from UBERON:0010091 ! future hindbrain meninx +relationship: immediate_transformation_of UBERON:0010091 ! future hindbrain meninx relationship: part_of UBERON:0002028 ! hindbrain [Term] @@ -55877,7 +55885,9 @@ synonym: "neuroretina" EXACT [] synonym: "stratum nervosum (retina)" EXACT [] synonym: "stratum nervosum retinae" EXACT [] is_a: UBERON:0001781 ! layer of retina -relationship: develops_from UBERON:0005425 ! presumptive neural retina +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: immediate_transformation_of UBERON:0005425 ! presumptive neural retina +relationship: immediate_transformation_of UBERON:0005425 ! presumptive neural retina [Term] id: UBERON:0003909 @@ -56039,7 +56049,6 @@ synonym: "epithelium of gut" EXACT [] synonym: "gastrodermis" EXACT [] synonym: "gut epithelial tissue" EXACT [] synonym: "gut epithelium" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001555 ! digestive tract @@ -56538,7 +56547,7 @@ synonym: "endocardial tube" EXACT [] is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0012275 ! meso-epithelium -relationship: develops_from UBERON:0005498 ! primitive heart tube +relationship: immediate_transformation_of UBERON:0005498 ! primitive heart tube [Term] id: UBERON:0004142 @@ -59599,7 +59608,6 @@ synonym: "digestive tract mucosa" EXACT [] synonym: "gut mucosa" EXACT [] synonym: "gut mucuous membrane" EXACT [] synonym: "mucosa of gut" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -59838,6 +59846,7 @@ def: "An epithelium that is part of a salivary gland [Automatically generated de synonym: "epithelial tissue of salivary gland" EXACT [] synonym: "epithelium of salivary gland" EXACT [] synonym: "salivary gland epithelial tissue" EXACT [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001044 ! saliva-secreting gland @@ -61797,7 +61806,7 @@ is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003220 ! metanephric mesenchyme -relationship: develops_from UBERON:0010535 ! primitive metanephric nephron +relationship: immediate_transformation_of UBERON:0010535 ! primitive metanephric nephron relationship: part_of UBERON:0000081 ! metanephros [Term] @@ -62278,11 +62287,6 @@ id: UBERON:0005186 is_obsolete: true replaced_by: UBERON:0004204 -[Term] -id: UBERON:0005187 -is_obsolete: true -replaced_by: UBERON:0004205 - [Term] id: UBERON:0005194 name: thoracic vein @@ -62759,7 +62763,7 @@ name: myelencephalon def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [] synonym: "myelencephalon (medulla oblongata)" RELATED [] is_a: UBERON:0004733 ! segmental subdivision of hindbrain -relationship: develops_from UBERON:0010096 ! future myelencephalon +relationship: immediate_transformation_of UBERON:0010096 ! future myelencephalon [Term] id: UBERON:0005291 @@ -62836,7 +62840,7 @@ is_a: UBERON:0004910 ! epithelium of male gonad is_a: UBERON:0005295 ! sex cord intersection_of: UBERON:0005295 ! sex cord intersection_of: part_of UBERON:0000473 ! testis -relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad +relationship: immediate_transformation_of UBERON:0010141 ! primitive sex cord of indifferent gonad [Term] id: UBERON:0005309 @@ -63171,7 +63175,6 @@ id: UBERON:0005388 name: photoreceptor array def: "An array of photoreceptors and any supporting cells found in an eye." [] synonym: "light-sensitive tissue" EXACT [] -is_a: BFO:0000004 ! independent continuant is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000970 ! eye relationship: part_of UBERON:0001016 ! nervous system @@ -63843,7 +63846,7 @@ synonym: "pronephric primordium" RELATED [] is_a: UBERON:0000926 ! mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006598 ! presumptive structure -relationship: develops_from UBERON:0007297 ! presumptive pronephric mesoderm +relationship: immediate_transformation_of UBERON:0007297 ! presumptive pronephric mesoderm relationship: part_of UBERON:0003064 ! intermediate mesoderm [Term] @@ -67420,7 +67423,7 @@ is_a: UBERON:0000955 ! brain intersection_of: UBERON:0000955 ! brain intersection_of: develops_from UBERON:0001049 ! neural tube relationship: develops_from UBERON:0001049 ! neural tube -relationship: develops_from UBERON:0006238 ! future brain +relationship: immediate_transformation_of UBERON:0006238 ! future brain relationship: part_of UBERON:0000033 ! head [Term] @@ -67635,6 +67638,7 @@ id: UBERON:0008906 name: lateral line nerve def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [] synonym: "lateral line nerves" EXACT [] +is_a: BFO:0000004 ! independent continuant is_a: UBERON:0001785 ! cranial nerve relationship: develops_from UBERON:0009128 ! lateral line placode relationship: part_of UBERON:0002540 ! lateral line system @@ -68228,7 +68232,7 @@ name: midbrain hindbrain boundary neural plate synonym: "MHB neural plate" EXACT [] synonym: "midbrain-hindbrain boundary neural plate" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: develops_from UBERON:0007281 ! presumptive midbrain hindbrain boundary +relationship: immediate_transformation_of UBERON:0007281 ! presumptive midbrain hindbrain boundary relationship: part_of UBERON:0003075 ! neural plate [Term] @@ -71044,6 +71048,7 @@ is_a: UBERON:0002418 ! cartilage tissue id: UBERON:0011595 name: jaw region def: "A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions." [] +is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0001708 ! jaw skeleton @@ -75639,6 +75644,7 @@ is_a: has_developmental_potential_involving ! has developmental potential involv [Typedef] id: develops_from name: develops from +name: develops_from def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] xref: RO:0002202 domain: BFO:0000004 ! independent continuant @@ -75817,10 +75823,14 @@ inverse_of: has_synaptic_terminal_in ! has synaptic terminal in [Typedef] id: immediate_transformation_of +name: immediate transformation of name: immediate_transformation_of +synonym: "direct_transformation_of" EXACT [] synonym: "direct_transformation_of" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "immediately transforms from" EXACT [] synonym: "immediately transforms from" EXACT [SIO:000658] xref: http://semanticscience.org/resource/SIO_000658 +xref: RO:0002495 property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl [Typedef] @@ -76015,13 +76025,6 @@ name: related via dependence to def: "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." [] xref: RO:0002609 -[Typedef] -id: seeAlso -name: see also -namespace: uberon -xref: http://www.w3.org/2000/01/rdf-schema#seeAlso -is_metadata_tag: true - [Typedef] id: spatially_coextensive_with name: spatially coextensive with diff --git a/cl.owl b/cl.owl index 9c81c9a87..7d563116c 100644 --- a/cl.owl +++ b/cl.owl @@ -7,12 +7,15 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" + xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:core1="http://purl.obolibrary.org/obo/core#" xmlns:uberon="http://purl.obolibrary.org/obo/uberon#" xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -21,8 +24,17 @@ + Alexander Diehl + Ceri van Slyke + Chris Mungall + David Osumi-Sutherland + Jim Balhoff + Melissa Haendel + Nicole Vasilevsky + Terry Meehan + Yvonne Bradford - See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. + @@ -323,13 +335,7 @@ - - http://www.w3.org/2000/01/rdf-schema#seeAlso - uberon - true - seeAlso - see also - + @@ -93861,14 +93867,6 @@ plexiform layer using GABA. - - - - - - - - @@ -93877,14 +93875,6 @@ plexiform layer using GABA. - - - - - - - - @@ -93893,14 +93883,6 @@ plexiform layer using GABA. - - - - - - - - @@ -93917,10 +93899,10 @@ plexiform layer using GABA. - + - - + + @@ -93949,14 +93931,6 @@ plexiform layer using GABA. - - - - - - - - @@ -93997,33 +93971,33 @@ plexiform layer using GABA. - + - - + + - + - - + + - + - + - + - + @@ -94037,10 +94011,10 @@ plexiform layer using GABA. - + - - + + @@ -94101,33 +94075,33 @@ plexiform layer using GABA. - + - + - + - + - + - + - + - + @@ -94149,14 +94123,6 @@ plexiform layer using GABA. - - - - - - - - @@ -94213,18 +94179,18 @@ plexiform layer using GABA. - + - - + + - + - - + + @@ -94237,6 +94203,14 @@ plexiform layer using GABA. + + + + + + + + @@ -94267,6 +94241,14 @@ plexiform layer using GABA. + + + + + + + + @@ -94275,6 +94257,14 @@ plexiform layer using GABA. + + + + + + + + @@ -94329,33 +94319,33 @@ plexiform layer using GABA. - + - - + + - + - - + + - + - + - + - + @@ -94397,14 +94387,6 @@ plexiform layer using GABA. - - - - - - - - @@ -94443,9 +94425,9 @@ plexiform layer using GABA. - + - + @@ -94481,12 +94463,6 @@ plexiform layer using GABA. - - - - - - @@ -94517,25 +94493,33 @@ plexiform layer using GABA. - + - - + + - + - + - + - + + + + + + + + + diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl index 3727e9327..25299b2aa 100644 --- a/imports/chebi_import.owl +++ b/imports/chebi_import.owl @@ -235,5 +235,5 @@ - + diff --git a/imports/go_import.owl b/imports/go_import.owl index 7e07623c7..766876ee4 100644 --- a/imports/go_import.owl +++ b/imports/go_import.owl @@ -7934,5 +7934,5 @@ - + diff --git a/imports/pato_import.owl b/imports/pato_import.owl index 383e4300c..f88579190 100644 --- a/imports/pato_import.owl +++ b/imports/pato_import.owl @@ -575,5 +575,5 @@ - + diff --git a/imports/pr_import.owl b/imports/pr_import.owl index b6d7330ca..cdfcbea4b 100644 --- a/imports/pr_import.owl +++ b/imports/pr_import.owl @@ -3588,5 +3588,5 @@ - + diff --git a/imports/uberon_import.owl b/imports/uberon_import.owl index 1dac947f8..fe6f0eb19 100644 --- a/imports/uberon_import.owl +++ b/imports/uberon_import.owl @@ -1,13 +1,17 @@ + xmlns:obo="http://purl.obolibrary.org/obo/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:dc="http://purl.org/dc/elements/1.1/"> @@ -29,18 +33,180 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -53,12 +219,42 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + direct_transformation_of + immediately transforms from + immediate transformation of @@ -225,7 +434,7 @@ - + @@ -842,7 +1051,7 @@ - + @@ -2215,7 +2424,7 @@ - + @@ -4133,7 +4342,7 @@ - + @@ -4150,7 +4359,7 @@ - + @@ -4167,7 +4376,7 @@ - + @@ -4355,7 +4564,7 @@ - + @@ -4960,7 +5169,7 @@ - + @@ -5241,7 +5450,7 @@ - + @@ -5277,7 +5486,7 @@ - + @@ -5919,7 +6128,7 @@ - + @@ -8695,7 +8904,7 @@ - + @@ -11169,7 +11378,7 @@ - + @@ -11263,7 +11472,7 @@ - + @@ -11841,7 +12050,7 @@ - + @@ -12742,12 +12951,23 @@ + + + + + + + + + + + - + @@ -13712,7 +13932,7 @@ - + @@ -13731,7 +13951,7 @@ - + @@ -13790,7 +14010,7 @@ - + @@ -13816,7 +14036,7 @@ - + @@ -13839,7 +14059,7 @@ - + @@ -15340,7 +15560,7 @@ - + @@ -15691,7 +15911,7 @@ - + @@ -16186,7 +16406,7 @@ - + @@ -16397,7 +16617,7 @@ - + @@ -16419,7 +16639,7 @@ - + @@ -17389,7 +17609,7 @@ - + @@ -18198,7 +18418,7 @@ - + @@ -19854,7 +20074,7 @@ - + @@ -19873,7 +20093,7 @@ - + @@ -22487,7 +22707,7 @@ - + @@ -22587,7 +22807,7 @@ - + @@ -22904,7 +23124,7 @@ - + @@ -22952,7 +23172,7 @@ - + @@ -24854,7 +25074,7 @@ - + @@ -32893,10 +33113,21 @@ + + + + + + + + + + + - + @@ -34357,7 +34588,7 @@ - + @@ -45487,7 +45718,7 @@ - + @@ -46730,15 +46961,6 @@ - - - - - true - - - - @@ -47936,7 +48158,7 @@ - + @@ -48105,7 +48327,7 @@ - + @@ -50477,7 +50699,7 @@ - + @@ -58809,7 +59031,7 @@ - + @@ -60803,7 +61025,7 @@ - + @@ -78814,5 +79036,5 @@ - + diff --git a/src/ontology/cl-basic.obo b/src/ontology/cl-basic.obo index 15f42de59..06337e554 100644 --- a/src/ontology/cl-basic.obo +++ b/src/ontology/cl-basic.obo @@ -3,9 +3,18 @@ subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful fo synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: LATIN "latin term" synonymtypedef: PLURAL "plural term" -remark: See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. ontology: cl/cl-basic +property_value: http://purl.org/dc/elements/1.1/contributor "Alexander Diehl" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Ceri van Slyke" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Jim Balhoff" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Melissa Haendel" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Nicole Vasilevsky" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Terry Meehan" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Yvonne Bradford" xsd:string property_value: http://purl.org/dc/elements/1.1/license http://creativecommons.org/licenses/by/4.0/ +property_value: seeAlso http://obofoundry.org/ontology/cl.html [Term] id: CL:0000000 @@ -22395,10 +22404,3 @@ id: lacks_plasma_membrane_part name: lacks_plasma_membrane_part expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" [] -[Typedef] -id: seeAlso -name: see also -namespace: uberon -xref: http://www.w3.org/2000/01/rdf-schema#seeAlso -is_metadata_tag: true - diff --git a/src/ontology/cl-basic.owl b/src/ontology/cl-basic.owl index 408f2c17d..eeb6c87ee 100644 --- a/src/ontology/cl-basic.owl +++ b/src/ontology/cl-basic.owl @@ -1,19 +1,28 @@ + xmlns:obo="http://purl.obolibrary.org/obo/" + xmlns:dc="http://purl.org/dc/elements/1.1/"> + Chris Mungall - See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo. + Ceri van Slyke + Melissa Haendel + Terry Meehan + Yvonne Bradford + + David Osumi-Sutherland + Nicole Vasilevsky + Jim Balhoff + Alexander Diehl @@ -314,13 +323,7 @@ - - http://www.w3.org/2000/01/rdf-schema#seeAlso - uberon - true - seeAlso - see also - + @@ -47723,5 +47726,5 @@ plexiform layer using GABA. - + diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl index 3727e9327..25299b2aa 100644 --- a/src/ontology/imports/chebi_import.owl +++ b/src/ontology/imports/chebi_import.owl @@ -235,5 +235,5 @@ - + diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl index 7e07623c7..766876ee4 100644 --- a/src/ontology/imports/go_import.owl +++ b/src/ontology/imports/go_import.owl @@ -7934,5 +7934,5 @@ - + diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index 383e4300c..f88579190 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -575,5 +575,5 @@ - + diff --git a/src/ontology/imports/pr_import.owl b/src/ontology/imports/pr_import.owl index b6d7330ca..cdfcbea4b 100644 --- a/src/ontology/imports/pr_import.owl +++ b/src/ontology/imports/pr_import.owl @@ -3588,5 +3588,5 @@ - + diff --git a/src/ontology/imports/uberon_import.obo b/src/ontology/imports/uberon_import.obo index 1766349be..10dbe95ad 100644 --- a/src/ontology/imports/uberon_import.obo +++ b/src/ontology/imports/uberon_import.obo @@ -17,7 +17,7 @@ synonym: "neck of uterus" EXACT [] synonym: "uterine cervix" EXACT [] is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005156 ! reproductive structure -relationship: BFO:0000050 UBERON:0000995 ! uterus +relationship: BFO:0000050 UBERON:0000995 ! part of uterus [Term] id: UBERON:0000004 @@ -32,9 +32,9 @@ synonym: "proboscis" RELATED [] is_a: UBERON:0002268 ! olfactory organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000051 UBERON:0006813 ! nasal skeleton -relationship: RO:0002202 UBERON:0003050 ! olfactory placode +relationship: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000051 UBERON:0006813 ! has part nasal skeleton +relationship: RO:0002202 UBERON:0003050 ! develops_from olfactory placode [Term] id: UBERON:0000006 @@ -47,7 +47,7 @@ synonym: "pancreatic insula" EXACT [] synonym: "pancreatic islet" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034922 ! cell cluster -relationship: BFO:0000050 UBERON:0000016 ! endocrine pancreas +relationship: BFO:0000050 UBERON:0000016 ! part of endocrine pancreas [Term] id: UBERON:0000007 @@ -63,10 +63,10 @@ is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010133 ! neuroendocrine gland is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000051 UBERON:0002196 ! adenohypophysis -relationship: BFO:0000051 UBERON:0002198 ! neurohypophysis -relationship: RO:0002202 UBERON:0034875 ! future pituitary gland +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000051 UBERON:0002196 ! has part adenohypophysis +relationship: BFO:0000051 UBERON:0002198 ! has part neurohypophysis +relationship: RO:0002495 UBERON:0034875 ! immediate transformation of future pituitary gland [Term] id: UBERON:0000009 @@ -80,7 +80,7 @@ synonym: "submucous layer" RELATED [] synonym: "tela submucosa" RELATED [] synonym: "tunica submucosa" RELATED [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0000010 @@ -90,7 +90,7 @@ synonym: "pars peripherica" EXACT [] synonym: "PNS" BROAD [] synonym: "systema nervosum periphericum" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0000012 @@ -100,7 +100,7 @@ synonym: "PNS - somatic" EXACT [] synonym: "somatic nervous system, somatic division" EXACT [] synonym: "somatic peripheral nervous system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0000010 ! peripheral nervous system +relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0000014 @@ -113,9 +113,9 @@ synonym: "skin region" EXACT [] synonym: "skin zone" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ -relationship: BFO:0000050 UBERON:0002097 ! skin of body -relationship: BFO:0000051 UBERON:0001003 ! skin epidermis -relationship: BFO:0000051 UBERON:0002067 ! dermis +relationship: BFO:0000050 UBERON:0002097 ! part of skin of body +relationship: BFO:0000051 UBERON:0001003 ! has part skin epidermis +relationship: BFO:0000051 UBERON:0002067 ! has part dermis [Term] id: UBERON:0000015 @@ -134,10 +134,10 @@ synonym: "islets of Langerhans part of pancreas" RELATED [] synonym: "pars endocrina pancreatis" EXACT [] is_a: UBERON:0000471 ! compound organ component is_a: UBERON:0004119 ! endoderm-derived structure -relationship: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000051 UBERON:0000006 ! islet of Langerhans -relationship: RO:0002202 UBERON:0003923 ! dorsal pancreatic bud +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000051 UBERON:0000006 ! has part islet of Langerhans +relationship: RO:0002202 UBERON:0003923 ! develops_from dorsal pancreatic bud [Term] id: UBERON:0000017 @@ -150,10 +150,10 @@ synonym: "pars exocrina pancreatis" EXACT [] is_a: UBERON:0000409 ! serous gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element -relationship: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000051 UBERON:0001263 ! pancreatic acinus -relationship: BFO:0000051 UBERON:0007329 ! pancreatic duct -relationship: RO:0002202 UBERON:0003924 ! ventral pancreatic bud +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000051 UBERON:0001263 ! has part pancreatic acinus +relationship: BFO:0000051 UBERON:0007329 ! has part pancreatic duct +relationship: RO:0002202 UBERON:0003924 ! develops_from ventral pancreatic bud [Term] id: UBERON:0000018 @@ -166,7 +166,7 @@ synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [] synonym: "zusammengesetztes Auge" RELATED [] is_a: UBERON:0015165 ! multi-unit eye -relationship: BFO:0000051 UBERON:0000971 ! ommatidium +relationship: BFO:0000051 UBERON:0000971 ! has part ommatidium [Term] id: UBERON:0000019 @@ -183,11 +183,11 @@ is_a: UBERON:0000047 ! simple eye is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0004088 ! orbital region -relationship: BFO:0000051 UBERON:0000965 ! lens of camera-type eye -relationship: BFO:0000051 UBERON:0000966 ! retina -relationship: RO:0002202 UBERON:0003072 ! optic cup +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0004088 ! part of orbital region +relationship: BFO:0000051 UBERON:0000965 ! has part lens of camera-type eye +relationship: BFO:0000051 UBERON:0000966 ! has part retina +relationship: RO:0002202 UBERON:0003072 ! develops_from optic cup [Term] id: UBERON:0000020 @@ -204,7 +204,7 @@ synonym: "sensory organ system organ" EXACT [] synonym: "sensory system organ" EXACT [] synonym: "Sinnesorgan" RELATED [] is_a: UBERON:0000062 ! organ -relationship: BFO:0000050 UBERON:0001032 ! sensory system +relationship: BFO:0000050 UBERON:0001032 ! part of sensory system [Term] id: UBERON:0000021 @@ -222,7 +222,7 @@ def: "Any hollow cylindrical anatomical structure containing a lumen through whi synonym: "anatomical tube" EXACT [] synonym: "duct" NARROW [] is_a: UBERON:0004111 ! anatomical conduit -relationship: BFO:0000051 UBERON:0013522 ! subdivision of tube +relationship: BFO:0000051 UBERON:0013522 ! has part subdivision of tube [Term] id: UBERON:0000026 @@ -241,13 +241,13 @@ def: "Any of the rounded masses of lymphoid tissue that are surrounded by a caps synonym: "lymph gland" RELATED [] synonym: "nodus lymphaticus" RELATED [] is_a: UBERON:0005057 ! immune organ -relationship: BFO:0000050 UBERON:0002465 ! lymphoid system -relationship: BFO:0000051 UBERON:0001744 ! lymphoid tissue -relationship: BFO:0000051 UBERON:0002006 ! cortex of lymph node -relationship: BFO:0000051 UBERON:0002007 ! medulla of lymph node -relationship: BFO:0000051 UBERON:0002194 ! capsule of lymph node -relationship: BFO:0000051 UBERON:0002391 ! lymph -relationship: RO:0002202 UBERON:0034953 ! embryonic lymph sac +relationship: BFO:0000050 UBERON:0002465 ! part of lymphoid system +relationship: BFO:0000051 UBERON:0001744 ! has part lymphoid tissue +relationship: BFO:0000051 UBERON:0002006 ! has part cortex of lymph node +relationship: BFO:0000051 UBERON:0002007 ! has part medulla of lymph node +relationship: BFO:0000051 UBERON:0002194 ! has part capsule of lymph node +relationship: BFO:0000051 UBERON:0002391 ! has part lymph +relationship: RO:0002202 UBERON:0034953 ! develops_from embryonic lymph sac [Term] id: UBERON:0000030 @@ -257,8 +257,8 @@ synonym: "lamina propria mucosa" EXACT [] synonym: "lamina propria mucosae" EXACT [] synonym: "tunica propria" RELATED [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0000344 ! mucosa -relationship: BFO:0000051 UBERON:0011825 ! loose connective tissue +relationship: BFO:0000050 UBERON:0000344 ! part of mucosa +relationship: BFO:0000051 UBERON:0011825 ! has part loose connective tissue [Term] id: UBERON:0000031 @@ -278,8 +278,8 @@ synonym: "windpipe lamina propria mucosa" EXACT [] synonym: "windpipe lamina propria mucosae" EXACT [] is_a: UBERON:0004779 ! respiratory system lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0001005 ! respiratory airway -relationship: BFO:0000050 UBERON:0000379 ! tracheal mucosa +intersection_of: BFO:0000050 UBERON:0001005 ! part of respiratory airway +relationship: BFO:0000050 UBERON:0000379 ! part of tracheal mucosa [Term] id: UBERON:0000033 @@ -289,7 +289,7 @@ synonym: "adult head" NARROW [] synonym: "cephalic area" RELATED [] synonym: "head (volume)" EXACT [] is_a: UBERON:0011676 ! subdivision of organism along main body axis -relationship: BFO:0000050 UBERON:0007811 ! craniocervical region +relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0000038 @@ -303,9 +303,9 @@ synonym: "ovarian follicular fluid" RELATED [] synonym: "ovary follicle fluid" EXACT [] synonym: "ovary follicular fluid" RELATED [] is_a: UBERON:0000463 ! organism substance -relationship: BFO:0000050 UBERON:0001305 ! ovarian follicle -relationship: BFO:0000051 UBERON:0000456 ! secretion of exocrine gland -relationship: BFO:0000051 UBERON:0007779 ! transudate +relationship: BFO:0000050 UBERON:0001305 ! part of ovarian follicle +relationship: BFO:0000051 UBERON:0000456 ! has part secretion of exocrine gland +relationship: BFO:0000051 UBERON:0007779 ! has part transudate [Term] id: UBERON:0000042 @@ -316,10 +316,10 @@ synonym: "tunica serosa" EXACT [] synonym: "wall of serous sac" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0000060 ! anatomical wall -relationship: BFO:0000051 UBERON:0001136 ! mesothelium -relationship: BFO:0000051 UBERON:0002384 ! connective tissue -relationship: RO:0002202 UBERON:0000926 ! mesoderm +relationship: BFO:0000050 UBERON:0000060 ! part of anatomical wall +relationship: BFO:0000051 UBERON:0001136 ! has part mesothelium +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0000043 @@ -328,7 +328,7 @@ def: "Dense regular connective tissue that connects muscle to bone[VSAO]." [] synonym: "sinew" RELATED [] synonym: "tendo" RELATED [] is_a: UBERON:0007846 ! dense regular connective tissue -relationship: BFO:0000050 UBERON:0002204 ! musculoskeletal system +relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system [Term] id: UBERON:0000044 @@ -346,7 +346,7 @@ synonym: "spinal ganglion" EXACT [] synonym: "spinal ganglion part of peripheral nervous system" EXACT [] is_a: UBERON:0001800 ! sensory ganglion is_a: UBERON:0010313 ! neural crest-derived structure -relationship: RO:0002202 UBERON:0003083 ! trunk neural crest +relationship: RO:0002202 UBERON:0003083 ! develops_from trunk neural crest [Term] id: UBERON:0000045 @@ -356,9 +356,9 @@ synonym: "ganglia" RELATED [] synonym: "neural ganglion" RELATED [] is_a: UBERON:0010001 ! cell cluster organ disjoint_from: UBERON:0002420 ! basal ganglion -relationship: BFO:0000050 UBERON:0001016 ! nervous system -relationship: BFO:0000051 UBERON:0003714 ! neural tissue -relationship: RO:0002202 UBERON:0003869 ! presumptive ganglion +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system +relationship: BFO:0000051 UBERON:0003714 ! has part neural tissue +relationship: RO:0002495 UBERON:0003869 ! immediate transformation of presumptive ganglion [Term] id: UBERON:0000047 @@ -379,7 +379,7 @@ synonym: "sensory patch" EXACT [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001846 ! internal ear +relationship: BFO:0000050 UBERON:0001846 ! part of internal ear [Term] id: UBERON:0000055 @@ -396,10 +396,10 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0006555 ! excretory tube is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0011143 ! upper urinary tract -relationship: RO:0002202 UBERON:0005081 ! ureter ureteric bud +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0011143 ! part of upper urinary tract +relationship: RO:0002202 UBERON:0005081 ! develops_from ureter ureteric bud [Term] id: UBERON:0000057 @@ -407,9 +407,9 @@ name: urethra def: "the fibromuscular tubular canal through which urine is discharged from the bladder to the exterior via the external urinary meatus; in males, the urethra is joined by the ejaculatory ducts and serves as a passageway for semen during ejaculation, as well as a canal for urine during voiding; in females, the urethra is shorter and emerges above the vaginal opening" [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001556 ! lower urinary tract -relationship: RO:0002202 UBERON:0000164 ! primitive urogenital sinus -relationship: RO:0002202 UBERON:0013241 ! embryonic urethral groove +relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract +relationship: RO:0002202 UBERON:0000164 ! develops_from primitive urogenital sinus +relationship: RO:0002202 UBERON:0013241 ! develops_from embryonic urethral groove [Term] id: UBERON:0000058 @@ -420,7 +420,7 @@ synonym: "ducts" RELATED [] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] is_a: UBERON:0000063 ! organ subunit -relationship: BFO:0000051 UBERON:0034969 ! epithelial layer of duct +relationship: BFO:0000051 UBERON:0034969 ! has part epithelial layer of duct [Term] id: UBERON:0000059 @@ -429,8 +429,8 @@ def: "A subdivision of the digestive tract that connects the small intestine to synonym: "intestinum crassum" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0004907 ! lower digestive tract +relationship: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0004907 ! part of lower digestive tract [Term] id: UBERON:0000060 @@ -440,7 +440,7 @@ synonym: "organ wall" RELATED [] synonym: "wall" BROAD [] synonym: "wall of organ" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000051 UBERON:0004923 ! organ component layer +relationship: BFO:0000051 UBERON:0004923 ! has part organ component layer [Term] id: UBERON:0000061 @@ -459,7 +459,7 @@ synonym: "body organ" RELATED [] synonym: "element" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure disjoint_from: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0000467 ! anatomical system +relationship: BFO:0000050 UBERON:0000467 ! part of anatomical system [Term] id: UBERON:0000063 @@ -477,7 +477,7 @@ def: "A multicellular structure that is a part of an organ." [] synonym: "cardinal organ part" EXACT [] synonym: "regional part of organ" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0000062 ! organ +relationship: BFO:0000050 UBERON:0000062 ! part of organ [Term] id: UBERON:0000065 @@ -485,8 +485,8 @@ name: respiratory tract def: "Anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [] is_a: UBERON:0001005 ! respiratory airway is_a: UBERON:0004119 ! endoderm-derived structure -relationship: RO:0002202 UBERON:0007026 ! presumptive gut -relationship: RO:0002202 UBERON:0008947 ! respiratory primordium +relationship: RO:0002202 UBERON:0007026 ! develops_from presumptive gut +relationship: RO:0002202 UBERON:0008947 ! develops_from respiratory primordium [Term] id: UBERON:0000072 @@ -497,8 +497,8 @@ synonym: "subdivision of respiratory tract" RELATED [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube -intersection_of: BFO:0000050 UBERON:0000065 ! respiratory tract -relationship: BFO:0000050 UBERON:0000065 ! respiratory tract +intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract +relationship: BFO:0000050 UBERON:0000065 ! part of respiratory tract [Term] id: UBERON:0000073 @@ -507,8 +507,8 @@ def: "Any part or collection of parts of the central or peripheral nervous syste synonym: "part of nervous system" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure intersection_of: UBERON:0000481 ! multi-tissue structure -intersection_of: BFO:0000050 UBERON:0001016 ! nervous system -relationship: BFO:0000050 UBERON:0001016 ! nervous system +intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0000074 @@ -525,8 +525,8 @@ synonym: "renal corpuscle" RELATED [] synonym: "renal glomeruli" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001229 ! renal corpuscle -relationship: RO:0002202 UBERON:0005749 ! glomerular tuft +relationship: BFO:0000050 UBERON:0001229 ! part of renal corpuscle +relationship: RO:0002202 UBERON:0005749 ! develops_from glomerular tuft [Term] id: UBERON:0000075 @@ -535,8 +535,8 @@ def: "Anatomical cluster consisting of the skeletal elements and articular eleme synonym: "skeletal system part" RELATED [] synonym: "skeletal system subdivision" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0001434 ! skeletal system -relationship: BFO:0000051 UBERON:0004765 ! skeletal element +relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system +relationship: BFO:0000051 UBERON:0004765 ! has part skeletal element [Term] id: UBERON:0000076 @@ -546,7 +546,7 @@ synonym: "surface (external) ectoderm" EXACT [] synonym: "surface ectoderm" EXACT [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0000924 ! ectoderm +relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm [Term] id: UBERON:0000077 @@ -555,8 +555,8 @@ def: "An anatomical structure that develops from the endoderm and the mesoderm." is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure -intersection_of: RO:0002202 UBERON:0000925 ! endoderm -intersection_of: RO:0002202 UBERON:0000926 ! mesoderm +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm +intersection_of: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0000078 @@ -565,9 +565,9 @@ def: "An anatomical structure that develops from the ectoderm, mesoderm and endo is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm -intersection_of: RO:0002202 UBERON:0000925 ! endoderm -intersection_of: RO:0002202 UBERON:0000926 ! mesoderm +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm +intersection_of: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0000079 @@ -586,9 +586,9 @@ synonym: "reproductive system of male organism" EXACT [] synonym: "systema genitale masculinum" RELATED [] is_a: UBERON:0000990 ! reproductive system intersection_of: UBERON:0000990 ! reproductive system -intersection_of: BFO:0000050 UBERON:0003101 ! male organism +intersection_of: BFO:0000050 UBERON:0003101 ! part of male organism disjoint_from: UBERON:0000474 ! female reproductive system -relationship: BFO:0000050 UBERON:0003101 ! male organism +relationship: BFO:0000050 UBERON:0003101 ! part of male organism [Term] id: UBERON:0000080 @@ -605,7 +605,7 @@ synonym: "opistonephros" RELATED [] synonym: "Wolffian body" EXACT [] is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: RO:0002202 UBERON:0002120 ! pronephros +relationship: RO:0002202 UBERON:0002120 ! develops_from pronephros [Term] id: UBERON:0000081 @@ -618,9 +618,9 @@ synonym: "metanephric kidney" RELATED [] synonym: "metanephron" EXACT [] is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme -relationship: RO:0002202 UBERON:0005080 ! metanephric ureteric bud -relationship: RO:0002202 UBERON:0005753 ! caudal part of nephrogenic cord +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme +relationship: RO:0002202 UBERON:0005080 ! develops_from metanephric ureteric bud +relationship: RO:0002202 UBERON:0005753 ! develops_from caudal part of nephrogenic cord [Term] id: UBERON:0000083 @@ -632,7 +632,7 @@ is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005103 ! mesonephric epithelium is_a: UBERON:0006555 ! excretory tube intersection_of: UBERON:0003914 ! epithelial tube -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0000084 @@ -648,8 +648,8 @@ synonym: "ureteric diverticulum" RELATED [] is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0034969 ! epithelial layer of duct -relationship: BFO:0000050 UBERON:0003074 ! mesonephric duct -relationship: RO:0002202 UBERON:0003074 ! mesonephric duct +relationship: BFO:0000050 UBERON:0003074 ! part of mesonephric duct +relationship: RO:0002202 UBERON:0003074 ! develops_from mesonephric duct [Term] id: UBERON:0000085 @@ -657,7 +657,7 @@ name: morula def: "A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum." [] synonym: "morula (2-16 cells)" RELATED [] is_a: UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0004716 ! conceptus +relationship: BFO:0000050 UBERON:0004716 ! part of conceptus [Term] id: UBERON:0000087 @@ -669,9 +669,9 @@ synonym: "embryoblastus; massa cellularis interna; pluriblastus senior" RELATED synonym: "ICM" RELATED [] synonym: "pluriblast" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0000085 ! morula -relationship: RO:0002202 UBERON:0000358 ! blastocyst +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: RO:0002202 UBERON:0000085 ! develops_from morula +relationship: RO:0002202 UBERON:0000358 ! develops_from blastocyst [Term] id: UBERON:0000088 @@ -682,8 +682,8 @@ synonym: "trophoblast layer" EXACT [] synonym: "trophoblastus" RELATED [] synonym: "trophoderm" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000358 ! blastocyst -relationship: RO:0002202 UBERON:0004345 ! trophectoderm +relationship: BFO:0000050 UBERON:0000358 ! part of blastocyst +relationship: RO:0002202 UBERON:0004345 ! develops_from trophectoderm [Term] id: UBERON:0000091 @@ -697,7 +697,7 @@ synonym: "embryonic shield" BROAD [] synonym: "germinal disc" BROAD [] synonym: "germinal disk" BROAD [] is_a: UBERON:0002050 ! embryonic structure -relationship: RO:0002202 UBERON:0000087 ! inner cell mass +relationship: RO:0002202 UBERON:0000087 ! develops_from inner cell mass [Term] id: UBERON:0000094 @@ -706,7 +706,7 @@ def: "Nonparenchymatous organ that primarily consists of dense connective tissue synonym: "membrane" BROAD [] synonym: "membrane of organ" EXACT [] is_a: UBERON:0000062 ! organ -relationship: BFO:0000051 UBERON:0011823 ! dense connective tissue +relationship: BFO:0000051 UBERON:0011823 ! has part dense connective tissue [Term] id: UBERON:0000095 @@ -716,7 +716,7 @@ synonym: "cardiac neural crest complex" RELATED [] synonym: "complexus cristae neuralis cardiacus" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0000102 @@ -729,8 +729,8 @@ synonym: "vasculature of lung" EXACT [] is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0000114 @@ -746,9 +746,9 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003837 ! thoracic segment connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung -relationship: RO:0002202 UBERON:0004883 ! lung mesenchyme +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung +relationship: RO:0002202 UBERON:0004883 ! develops_from lung mesenchyme [Term] id: UBERON:0000115 @@ -760,8 +760,8 @@ synonym: "lung epithelial tissue" EXACT [] synonym: "pulmonary epithelium" RELATED [] is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0000117 @@ -774,9 +774,9 @@ synonym: "tracheobronchial tree segment" NARROW [] is_a: UBERON:0000025 ! tube is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000025 ! tube -intersection_of: BFO:0000050 UBERON:0000065 ! respiratory tract -relationship: BFO:0000050 UBERON:0000065 ! respiratory tract -relationship: BFO:0000051 UBERON:0000483 ! epithelium +intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract +relationship: BFO:0000050 UBERON:0000065 ! part of respiratory tract +relationship: BFO:0000051 UBERON:0000483 ! has part epithelium [Term] id: UBERON:0000118 @@ -789,8 +789,8 @@ synonym: "primary lung bud" RELATED [] synonym: "respiratory diverticulum" RELATED [] is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0005911 ! endo-epithelium -relationship: RO:0002202 UBERON:0005597 ! lung primordium -relationship: RO:0002202 UBERON:0008947 ! respiratory primordium +relationship: RO:0002202 UBERON:0005597 ! develops_from lung primordium +relationship: RO:0002202 UBERON:0008947 ! develops_from respiratory primordium [Term] id: UBERON:0000119 @@ -807,7 +807,7 @@ id: UBERON:0000121 name: perineurium def: "A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition)" [] is_a: UBERON:0011822 ! dense irregular connective tissue -relationship: BFO:0000050 UBERON:0001019 ! nerve fasciculus +relationship: BFO:0000050 UBERON:0001019 ! part of nerve fasciculus [Term] id: UBERON:0000122 @@ -817,7 +817,7 @@ synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [] synonym: "neural fiber bundle" EXACT [] is_a: UBERON:0005162 ! multi cell part structure -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0000125 @@ -830,8 +830,8 @@ synonym: "nucleus" BROAD [] synonym: "nucleus of CNS" EXACT [] synonym: "nucleus of neuraxis" RELATED [] is_a: UBERON:0011215 ! central nervous system cell part cluster -relationship: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: BFO:0000051 UBERON:0002020 ! gray matter +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: BFO:0000051 UBERON:0002020 ! has part gray matter [Term] id: UBERON:0000153 @@ -850,7 +850,7 @@ name: membranous layer synonym: "membrane" BROAD [] synonym: "membranous organ component" EXACT [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0000064 ! organ part +relationship: BFO:0000050 UBERON:0000064 ! part of organ part [Term] id: UBERON:0000159 @@ -868,9 +868,9 @@ synonym: "mesenteron" RELATED [] synonym: "pars analis recti" RELATED [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001353 ! anal region -relationship: RO:0002202 UBERON:0011272 ! embryonic skin basal layer +relationship: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001353 ! part of anal region +relationship: RO:0002202 UBERON:0011272 ! develops_from embryonic skin basal layer [Term] id: UBERON:0000160 @@ -879,7 +879,7 @@ def: "Segment of the alimentary canal extending from the stomach to the anus and synonym: "bowel" EXACT [] synonym: "intestinal tract" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0000161 @@ -899,8 +899,8 @@ synonym: "cloacal chamber" RELATED [] synonym: "vent" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube -relationship: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0004122 ! genitourinary system +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0004122 ! part of genitourinary system [Term] id: UBERON:0000163 @@ -908,9 +908,9 @@ name: embryonic cloaca def: "endoderm-lined chamber that develops as pouch-like dilation of the caudal end of the hindgut and receives the allantois ventrally and two mesonephric ducts laterally; caudally it ends blindly at the cloacal membrane formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm[MP]." [] synonym: "cloaca" RELATED [] is_a: UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000050 UBERON:0012361 ! internal anal region +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000050 UBERON:0012361 ! part of internal anal region [Term] id: UBERON:0000164 @@ -921,8 +921,8 @@ synonym: "sinus urogenitalis" EXACT [] synonym: "UGS" EXACT [] synonym: "urogenital sinus" BROAD [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000163 ! embryonic cloaca -relationship: BFO:0000050 UBERON:0001008 ! renal system +relationship: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca +relationship: BFO:0000050 UBERON:0001008 ! part of renal system [Term] id: UBERON:0000165 @@ -943,9 +943,9 @@ synonym: "trophic apparatus" RELATED [] synonym: "vestibule of mouth" RELATED [] synonym: "vestibulum oris" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: RO:0002202 UBERON:0035804 ! future mouth +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: RO:0002202 UBERON:0035804 ! develops_from future mouth [Term] id: UBERON:0000166 @@ -956,7 +956,7 @@ synonym: "oral fissure" EXACT [] synonym: "oral orifice" EXACT [] synonym: "oral part of face" RELATED [] is_a: UBERON:0000161 ! orifice -relationship: BFO:0000050 UBERON:0000165 ! mouth +relationship: BFO:0000050 UBERON:0000165 ! part of mouth [Term] id: UBERON:0000168 @@ -964,7 +964,7 @@ name: proximal-distal subdivision of colon def: "A section dividing a colon along a proximal-distal axis." [] synonym: "segment of colon" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0001155 ! colon +relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0000170 @@ -975,9 +975,9 @@ synonym: "lungs pair" EXACT [] synonym: "pulmones" EXACT [] synonym: "set of lungs" EXACT [] is_a: UBERON:0034925 ! anatomical collection -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000051 UBERON:0002167 ! right lung -relationship: BFO:0000051 UBERON:0002168 ! left lung +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000051 UBERON:0002167 ! has part right lung +relationship: BFO:0000051 UBERON:0002168 ! has part left lung [Term] id: UBERON:0000171 @@ -991,7 +991,7 @@ synonym: "organ of respiratory system" EXACT [] synonym: "respiratory organ" EXACT [] synonym: "respiratory system organ" EXACT [] is_a: UBERON:0000062 ! organ -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0000173 @@ -1009,9 +1009,9 @@ synonym: "portion of blood" EXACT [] synonym: "vertebrate blood" EXACT [] synonym: "whole blood" RELATED [] is_a: UBERON:0000179 ! haemolymphatic fluid -relationship: BFO:0000050 UBERON:0002390 ! hematopoietic system -relationship: BFO:0000051 UBERON:0001969 ! blood plasma -relationship: RO:0002202 UBERON:0006596 ! presumptive blood +relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system +relationship: BFO:0000051 UBERON:0001969 ! has part blood plasma +relationship: RO:0002495 UBERON:0006596 ! immediate transformation of presumptive blood [Term] id: UBERON:0000179 @@ -1021,8 +1021,8 @@ synonym: "blood or blood analog" RELATED [] synonym: "circulating fluid" RELATED [] is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0000463 ! organism substance -intersection_of: BFO:0000050 UBERON:0002193 ! hemolymphoid system -relationship: BFO:0000050 UBERON:0002193 ! hemolymphoid system +intersection_of: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system +relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system [Term] id: UBERON:0000203 @@ -1034,7 +1034,7 @@ synonym: "dorsal telencephalic area" EXACT [] synonym: "dorsal telencephalon" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0000204 @@ -1046,7 +1046,7 @@ synonym: "subpallium" NARROW [] synonym: "ventral telencephalon" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0000211 @@ -1054,7 +1054,7 @@ name: ligament def: "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ." [] synonym: "ligament organ" EXACT [] is_a: UBERON:0000062 ! organ -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0000305 @@ -1063,9 +1063,9 @@ def: "the thin innermost layer of the extraembryonic membranes that contains the synonym: "amnios" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane -relationship: BFO:0000051 UBERON:0003254 ! amniotic ectoderm -relationship: BFO:0000051 UBERON:0003262 ! amniotic mesoderm -relationship: RO:0002202 UBERON:0005971 ! amniotic fold +relationship: BFO:0000051 UBERON:0003254 ! has part amniotic ectoderm +relationship: BFO:0000051 UBERON:0003262 ! has part amniotic mesoderm +relationship: RO:0002202 UBERON:0005971 ! develops_from amniotic fold [Term] id: UBERON:0000307 @@ -1074,7 +1074,7 @@ def: "Organism at the blastula stage - an early stage of embryonic development i synonym: "blastosphere" RELATED [] synonym: "blastula embryo" EXACT [] is_a: UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0007010 ! cleaving embryo +relationship: RO:0002202 UBERON:0007010 ! develops_from cleaving embryo [Term] id: UBERON:0000310 @@ -1084,7 +1084,7 @@ synonym: "mamma" RELATED [] synonym: "mammary part of chest" EXACT [] synonym: "mammary region" EXACT [] is_a: UBERON:0034929 ! external soft tissue zone -relationship: BFO:0000050 UBERON:0001443 ! chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0000314 @@ -1116,8 +1116,8 @@ synonym: "organ mucosa of cecum" EXACT [] synonym: "organ mucosa of intestinum crassum caecum" EXACT [] is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0001153 ! caecum +intersection_of: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0001153 ! part of caecum [Term] id: UBERON:0000317 @@ -1132,8 +1132,8 @@ synonym: "mucosa of colon" EXACT [] synonym: "mucosa of large bowel" EXACT [] is_a: UBERON:0001207 ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001155 ! colon -relationship: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon +relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0000320 @@ -1146,8 +1146,8 @@ synonym: "mucosa of duodenum" EXACT [] synonym: "mucous membrane of duodenum" EXACT [] is_a: UBERON:0001204 ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002114 ! duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0000323 @@ -1164,7 +1164,7 @@ name: gastric gland def: "The branched tubular glands found in the mucosa of the fundus and body of the stomach which contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin." [] is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003294 ! gland of foregut -relationship: BFO:0000050 UBERON:0006924 ! stomach glandular epithelium +relationship: BFO:0000050 UBERON:0006924 ! part of stomach glandular epithelium [Term] id: UBERON:0000328 @@ -1176,8 +1176,8 @@ synonym: "wall of digestive tract" EXACT [] synonym: "wall of gut" EXACT [] is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0000331 @@ -1194,8 +1194,8 @@ synonym: "mucous membrane of ileum" EXACT [] synonym: "organ mucosa of ileum" EXACT [] is_a: UBERON:0001204 ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0002116 ! ileum +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0002116 ! part of ileum [Term] id: UBERON:0000332 @@ -1205,7 +1205,7 @@ synonym: "fat marrow" RELATED [] synonym: "medulla ossium flava" EXACT [] synonym: "yellow marrow" EXACT [] is_a: UBERON:0002371 ! bone marrow -relationship: BFO:0000050 UBERON:0007195 ! stroma of bone marrow +relationship: BFO:0000050 UBERON:0007195 ! part of stroma of bone marrow [Term] id: UBERON:0000333 @@ -1249,8 +1249,8 @@ synonym: "organ mucosa of bowel gland" EXACT [] synonym: "organ mucosa of intestine gland" EXACT [] is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001242 ! intestinal mucosa -relationship: BFO:0000050 UBERON:0001242 ! intestinal mucosa +intersection_of: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa +relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa [Term] id: UBERON:0000344 @@ -1264,8 +1264,8 @@ synonym: "organ mucosa" EXACT [] synonym: "region of mucosa" RELATED [] synonym: "tunica mucosa" RELATED [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000051 UBERON:0000483 ! epithelium -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000051 UBERON:0000483 ! has part epithelium +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0000349 @@ -1274,7 +1274,7 @@ def: "A set of midline structures surrounding the brainstem of the mammalian bra synonym: "visceral brain" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0001890 ! forebrain +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain [Term] id: UBERON:0000353 @@ -1300,8 +1300,8 @@ synonym: "tunica mucosa pharyngea" EXACT [] synonym: "tunica mucosa pharyngis" EXACT [] is_a: UBERON:0004785 ! respiratory system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0000358 @@ -1310,10 +1310,10 @@ def: "The mammalian blastocyst is a hollow ball of cells containing two cell typ synonym: "blastocystis" RELATED [] synonym: "blastula" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000307 ! blastula -relationship: BFO:0000051 UBERON:0000087 ! inner cell mass -relationship: BFO:0000051 UBERON:0000088 ! trophoblast -relationship: RO:0002202 UBERON:0000085 ! morula +relationship: BFO:0000050 UBERON:0000307 ! part of blastula +relationship: BFO:0000051 UBERON:0000087 ! has part inner cell mass +relationship: BFO:0000051 UBERON:0000088 ! has part trophoblast +relationship: RO:0002202 UBERON:0000085 ! develops_from morula [Term] id: UBERON:0000362 @@ -1331,9 +1331,9 @@ synonym: "renal pyramids" EXACT [] synonym: "renal pyramids set" EXACT [] is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000051 UBERON:0004200 ! kidney pyramid +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000051 UBERON:0004200 ! has part kidney pyramid [Term] id: UBERON:0000365 @@ -1345,7 +1345,7 @@ synonym: "transitional epithelium" EXACT [] synonym: "uroepithelium" EXACT [] is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium -relationship: BFO:0000050 UBERON:0001008 ! renal system +relationship: BFO:0000050 UBERON:0001008 ! part of renal system [Term] id: UBERON:0000369 @@ -1354,7 +1354,7 @@ def: "The corpus striatum (striated body) is a compound structure consisting of synonym: "striate body" RELATED [] synonym: "striated body" RELATED [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0002420 ! basal ganglion +relationship: BFO:0000050 UBERON:0002420 ! part of basal ganglion [Term] id: UBERON:0000376 @@ -1376,9 +1376,9 @@ synonym: "upper leg" EXACT [] is_a: UBERON:0002472 ! stylopod is_a: UBERON:0008784 ! lower limb segment intersection_of: UBERON:0002472 ! stylopod -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000051 UBERON:0015052 ! femur endochondral element +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000051 UBERON:0015052 ! has part femur endochondral element [Term] id: UBERON:0000378 @@ -1395,8 +1395,8 @@ is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0014892 ! skeletal muscle organ union_of: UBERON:0001575 ! extrinsic muscle of tongue union_of: UBERON:0001576 ! intrinsic muscle of tongue -relationship: BFO:0000050 UBERON:0000165 ! mouth -relationship: RO:0002202 UBERON:0005594 ! head somite +relationship: BFO:0000050 UBERON:0000165 ! part of mouth +relationship: RO:0002202 UBERON:0005594 ! develops_from head somite [Term] id: UBERON:0000379 @@ -1423,8 +1423,8 @@ synonym: "windpipe mucous membrane" EXACT [] synonym: "windpipe organ mucosa" EXACT [] is_a: UBERON:0004785 ! respiratory system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001005 ! respiratory airway -relationship: BFO:0000050 UBERON:0001005 ! respiratory airway +intersection_of: BFO:0000050 UBERON:0001005 ! part of respiratory airway +relationship: BFO:0000050 UBERON:0001005 ! part of respiratory airway [Term] id: UBERON:0000383 @@ -1439,8 +1439,8 @@ synonym: "set of all muscles" EXACT [] synonym: "set of muscles of body" EXACT [] synonym: "vertebrate muscular system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0002204 ! musculoskeletal system -relationship: BFO:0000051 UBERON:0001015 ! musculature +relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system +relationship: BFO:0000051 UBERON:0001015 ! has part musculature [Term] id: UBERON:0000395 @@ -1458,8 +1458,8 @@ synonym: "vestibulocochlear ganglion cochlear component" RELATED [] synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [] is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0002827 ! vestibulocochlear ganglion -relationship: BFO:0000050 UBERON:0016490 ! auditory system +relationship: BFO:0000050 UBERON:0002827 ! part of vestibulocochlear ganglion +relationship: BFO:0000050 UBERON:0016490 ! part of auditory system [Term] id: UBERON:0000397 @@ -1476,8 +1476,8 @@ synonym: "large bowel epithelium" EXACT [] synonym: "posterior intestine epithelium" EXACT [] is_a: UBERON:0001278 ! epithelium of large intestine intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001155 ! colon -relationship: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon +relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0000399 @@ -1494,8 +1494,8 @@ synonym: "mucous membrane of jejunum" EXACT [] synonym: "organ mucosa of jejunum" EXACT [] is_a: UBERON:0001204 ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0002115 ! jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0002115 ! part of jejunum [Term] id: UBERON:0000400 @@ -1505,8 +1505,8 @@ synonym: "epithelium of jejunum" EXACT [] is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0013636 ! epithelium of intestinal villus intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0008343 ! intestinal villus of jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0008343 ! part of intestinal villus of jejunum [Term] id: UBERON:0000403 @@ -1514,16 +1514,16 @@ name: scalp def: "The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL)." [] synonym: "scalpus" RELATED [] is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000051 UBERON:0000014 ! zone of skin -relationship: BFO:0000051 UBERON:0002515 ! periosteum +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000051 UBERON:0000014 ! has part zone of skin +relationship: BFO:0000051 UBERON:0002515 ! has part periosteum [Term] id: UBERON:0000409 name: serous gland def: "A gland in which the principal secretory cells are serous secreting cells." [] is_a: UBERON:0002365 ! exocrine gland -relationship: BFO:0000051 UBERON:0013232 ! serous acinus +relationship: BFO:0000051 UBERON:0013232 ! has part serous acinus [Term] id: UBERON:0000410 @@ -1557,8 +1557,8 @@ synonym: "tunica mucosa bronchi" EXACT [] is_a: UBERON:0000379 ! tracheal mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0000412 @@ -1577,7 +1577,7 @@ synonym: "papillae dermis" RELATED [] synonym: "skin papilla" RELATED [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001992 ! papillary layer of dermis +relationship: BFO:0000050 UBERON:0001992 ! part of papillary layer of dermis [Term] id: UBERON:0000414 @@ -1598,8 +1598,8 @@ synonym: "arterial wall" EXACT [] synonym: "wall of artery" EXACT [] is_a: UBERON:0035965 ! wall of blood vessel intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0001637 ! artery -relationship: BFO:0000050 UBERON:0001637 ! artery +intersection_of: BFO:0000050 UBERON:0001637 ! part of artery +relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0000423 @@ -1611,7 +1611,7 @@ synonym: "glandula sudorifera merocrina" EXACT [] synonym: "merocrine sweat gland" RELATED [] is_a: UBERON:0001820 ! sweat gland is_a: UBERON:0010243 ! merocrine gland -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis [Term] id: UBERON:0000428 @@ -1633,8 +1633,8 @@ is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0000444 @@ -1657,7 +1657,7 @@ synonym: "cerebral medulla" EXACT [] synonym: "subcortex" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000955 ! brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0000456 @@ -1679,8 +1679,8 @@ name: endocervix def: "1. The mucous membrane lining the canal of the cervix uteri. 2. The region of the opening of the uterine cervix into the uterine cavity." [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure -relationship: BFO:0000050 UBERON:0000002 ! uterine cervix -relationship: BFO:0000051 UBERON:0000485 ! simple columnar epithelium +relationship: BFO:0000050 UBERON:0000002 ! part of uterine cervix +relationship: BFO:0000051 UBERON:0000485 ! has part simple columnar epithelium [Term] id: UBERON:0000459 @@ -1693,8 +1693,8 @@ synonym: "wall of uterus" EXACT [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0000995 ! uterus +intersection_of: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0000995 ! part of uterus [Term] id: UBERON:0000463 @@ -1706,7 +1706,7 @@ synonym: "organism substance" EXACT [] synonym: "portion of body substance" EXACT [] synonym: "portion of organism substance" EXACT [] is_a: UBERON:0000465 ! material anatomical entity -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0000464 @@ -1741,8 +1741,8 @@ synonym: "connected anatomical system" EXACT [] synonym: "organ system" EXACT [] synonym: "system" BROAD [] is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000051 UBERON:0000062 ! organ +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000051 UBERON:0000062 ! has part organ [Term] id: UBERON:0000468 @@ -1763,7 +1763,7 @@ name: compound organ component def: "Multi-tissue structure that is part of a compound organ." [] synonym: "compound organ components" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0003103 ! compound organ +relationship: BFO:0000050 UBERON:0003103 ! part of compound organ [Term] id: UBERON:0000473 @@ -1779,10 +1779,10 @@ synonym: "testiculus" RELATED [] is_a: UBERON:0000991 ! gonad is_a: UBERON:0003135 ! male reproductive organ intersection_of: UBERON:0000991 ! gonad -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system disjoint_from: UBERON:0000992 ! ovary disjoint_from: UBERON:0009117 ! indifferent gonad -relationship: RO:0002202 UBERON:0009117 ! indifferent gonad +relationship: RO:0002202 UBERON:0009117 ! develops_from indifferent gonad [Term] id: UBERON:0000474 @@ -1801,8 +1801,8 @@ synonym: "reproductive system of female organism" EXACT [] synonym: "systema genitale femininum" RELATED [] is_a: UBERON:0000990 ! reproductive system intersection_of: UBERON:0000990 ! reproductive system -intersection_of: BFO:0000050 UBERON:0003100 ! female organism -relationship: BFO:0000050 UBERON:0003100 ! female organism +intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism +relationship: BFO:0000050 UBERON:0003100 ! part of female organism [Term] id: UBERON:0000475 @@ -1813,7 +1813,7 @@ synonym: "body part" RELATED [] synonym: "body region" RELATED [] synonym: "cardinal body part" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0000476 @@ -1838,8 +1838,8 @@ synonym: "extraembryonic structures" RELATED [] synonym: "extraembryonic tissue" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure -intersection_of: BFO:0000050 UBERON:0016887 ! entire extraembryonic component -relationship: BFO:0000050 UBERON:0016887 ! entire extraembryonic component +intersection_of: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component +relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0000479 @@ -1849,7 +1849,7 @@ synonym: "portion of tissue" EXACT [] synonym: "simple tissue" NARROW [] synonym: "tissue portion" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0000481 @@ -1857,7 +1857,7 @@ name: multi-tissue structure def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [] synonym: "multi-tissue structures" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000051 UBERON:0000479 ! tissue +relationship: BFO:0000051 UBERON:0000479 ! has part tissue [Term] id: UBERON:0000483 @@ -1868,7 +1868,7 @@ synonym: "portion of epithelium" EXACT [] is_a: UBERON:0000479 ! tissue union_of: UBERON:0000486 ! multilaminar epithelium union_of: UBERON:0000490 ! unilaminar epithelium -relationship: BFO:0000051 UBERON:0005769 ! basement membrane of epithelium +relationship: BFO:0000051 UBERON:0005769 ! has part basement membrane of epithelium [Term] id: UBERON:0000484 @@ -1924,8 +1924,8 @@ synonym: "cavitated compound organs" RELATED [] synonym: "cavitated organ" EXACT [] is_a: UBERON:0003103 ! compound organ intersection_of: UBERON:0003103 ! compound organ -intersection_of: BFO:0000051 UBERON:0002553 ! anatomical cavity -relationship: BFO:0000051 UBERON:0002553 ! anatomical cavity +intersection_of: BFO:0000051 UBERON:0002553 ! has part anatomical cavity +relationship: BFO:0000051 UBERON:0002553 ! has part anatomical cavity [Term] id: UBERON:0000490 @@ -1942,7 +1942,7 @@ def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes synonym: "intercellular fluid" EXACT [] synonym: "tissue fluid" EXACT [] is_a: UBERON:0000463 ! organism substance -relationship: BFO:0000050 UBERON:0000479 ! tissue +relationship: BFO:0000050 UBERON:0000479 ! part of tissue [Term] id: UBERON:0000915 @@ -1954,7 +1954,7 @@ synonym: "upper body" RELATED [] synonym: "upper trunk" RELATED [] is_a: UBERON:0009569 ! subdivision of trunk is_a: UBERON:0011676 ! subdivision of organism along main body axis -relationship: BFO:0000051 UBERON:0014477 ! thoracic skeleton +relationship: BFO:0000051 UBERON:0014477 ! has part thoracic skeleton [Term] id: UBERON:0000916 @@ -1966,7 +1966,7 @@ synonym: "adult abdomen" RELATED [] synonym: "belly" RELATED [] synonym: "celiac region" RELATED [] is_a: UBERON:0009569 ! subdivision of trunk -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0000922 @@ -1994,7 +1994,7 @@ name: ectoderm def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [] synonym: "embryonic ectoderm" EXACT [] is_a: UBERON:0000923 ! germ layer -relationship: RO:0002202 UBERON:0006601 ! presumptive ectoderm +relationship: RO:0002495 UBERON:0006601 ! immediate transformation of presumptive ectoderm [Term] id: UBERON:0000925 @@ -2002,7 +2002,7 @@ name: endoderm def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [] synonym: "entoderm" RELATED [] is_a: UBERON:0000923 ! germ layer -relationship: RO:0002202 UBERON:0006595 ! presumptive endoderm +relationship: RO:0002495 UBERON:0006595 ! immediate transformation of presumptive endoderm [Term] id: UBERON:0000926 @@ -2012,7 +2012,7 @@ synonym: "embryonic mesoderm" RELATED [] synonym: "entire mesoderm" RELATED [] synonym: "mesodermal mantle" RELATED [] is_a: UBERON:0000923 ! germ layer -relationship: RO:0002202 UBERON:0006603 ! presumptive mesoderm +relationship: RO:0002495 UBERON:0006603 ! immediate transformation of presumptive mesoderm [Term] id: UBERON:0000930 @@ -2027,8 +2027,8 @@ synonym: "stomatodeum" EXACT [] synonym: "stomodaeum" EXACT [] synonym: "stomodeal-hypophyseal primordium" BROAD [] is_a: UBERON:0013522 ! subdivision of tube -relationship: BFO:0000050 UBERON:0000924 ! ectoderm -relationship: BFO:0000050 UBERON:0035804 ! future mouth +relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm +relationship: BFO:0000050 UBERON:0035804 ! part of future mouth [Term] id: UBERON:0000945 @@ -2041,7 +2041,7 @@ synonym: "stomach chamber" NARROW [] synonym: "ventriculus" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0010039 ! food storage organ -relationship: BFO:0000050 UBERON:0001041 ! foregut +relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0000947 @@ -2054,7 +2054,7 @@ synonym: "trunk of systemic arterial tree" EXACT [] is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel is_a: UBERON:0013768 ! great vessel of heart -relationship: BFO:0000050 UBERON:0010191 ! aortic system +relationship: BFO:0000050 UBERON:0010191 ! part of aortic system [Term] id: UBERON:0000948 @@ -2070,10 +2070,10 @@ is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0007100 ! primary circulatory organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0007100 ! primary circulatory organ -intersection_of: BFO:0000051 UBERON:0004151 ! cardiac chamber -relationship: BFO:0000050 UBERON:0015410 ! heart plus pericardium -relationship: BFO:0000051 UBERON:0004151 ! cardiac chamber -relationship: RO:0002202 UBERON:0004141 ! heart tube +intersection_of: BFO:0000051 UBERON:0004151 ! has part cardiac chamber +relationship: BFO:0000050 UBERON:0015410 ! part of heart plus pericardium +relationship: BFO:0000051 UBERON:0004151 ! has part cardiac chamber +relationship: RO:0002202 UBERON:0004141 ! develops_from heart tube [Term] id: UBERON:0000949 @@ -2099,7 +2099,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000051 UBERON:0002368 ! endocrine gland +relationship: BFO:0000051 UBERON:0002368 ! has part endocrine gland [Term] id: UBERON:0000955 @@ -2112,9 +2112,9 @@ synonym: "synganglion" RELATED [] synonym: "the brain" RELATED [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: RO:0002202 UBERON:0006238 ! future brain +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: RO:0002495 UBERON:0006238 ! immediate transformation of future brain [Term] id: UBERON:0000956 @@ -2129,8 +2129,8 @@ synonym: "cortical plate (CTXpl)" RELATED [] synonym: "pallium of the brain" RELATED [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 ! central nervous system gray matter layer -relationship: BFO:0000050 UBERON:0000203 ! pallium -relationship: BFO:0000050 UBERON:0005401 ! cerebral hemisphere gray matter +relationship: BFO:0000050 UBERON:0000203 ! part of pallium +relationship: BFO:0000050 UBERON:0005401 ! part of cerebral hemisphere gray matter [Term] id: UBERON:0000957 @@ -2151,8 +2151,8 @@ id: UBERON:0000963 name: head sensillum is_a: UBERON:0002536 ! arthropod sensillum intersection_of: UBERON:0002536 ! arthropod sensillum -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0000964 @@ -2164,13 +2164,13 @@ synonym: "tunica cornea" RELATED [] is_a: UBERON:0003102 ! surface structure is_a: UBERON:0010000 ! multicellular anatomical structure is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0001801 ! anterior segment of eyeball -relationship: BFO:0000050 UBERON:0010409 ! ocular surface region -relationship: BFO:0000050 UBERON:0012430 ! tunica fibrosa of eyeball -relationship: BFO:0000051 UBERON:0001772 ! corneal epithelium -relationship: BFO:0000051 UBERON:0004370 ! anterior limiting lamina of cornea -relationship: RO:0002202 UBERON:0004348 ! optic eminence -relationship: RO:0002202 UBERON:0005427 ! corneal primordium +relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball +relationship: BFO:0000050 UBERON:0010409 ! part of ocular surface region +relationship: BFO:0000050 UBERON:0012430 ! part of tunica fibrosa of eyeball +relationship: BFO:0000051 UBERON:0001772 ! has part corneal epithelium +relationship: BFO:0000051 UBERON:0004370 ! has part anterior limiting lamina of cornea +relationship: RO:0002202 UBERON:0004348 ! develops_from optic eminence +relationship: RO:0002202 UBERON:0005427 ! develops_from corneal primordium [Term] id: UBERON:0000965 @@ -2185,8 +2185,8 @@ synonym: "lenses" RELATED [] synonym: "ocular lens" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005389 ! transparent eye structure -relationship: BFO:0000050 UBERON:0001801 ! anterior segment of eyeball -relationship: RO:0002202 UBERON:0005426 ! lens vesicle +relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball +relationship: RO:0002202 UBERON:0005426 ! develops_from lens vesicle [Term] id: UBERON:0000966 @@ -2199,9 +2199,9 @@ synonym: "retinas" RELATED [] synonym: "tunica interna of eyeball" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005388 ! photoreceptor array -relationship: BFO:0000050 UBERON:0001802 ! posterior segment of eyeball -relationship: BFO:0000050 UBERON:0019207 ! chorioretinal region -relationship: RO:0002202 UBERON:0003072 ! optic cup +relationship: BFO:0000050 UBERON:0001802 ! part of posterior segment of eyeball +relationship: BFO:0000050 UBERON:0019207 ! part of chorioretinal region +relationship: RO:0002202 UBERON:0003072 ! develops_from optic cup [Term] id: UBERON:0000970 @@ -2210,7 +2210,7 @@ def: "An organ that detects light." [] synonym: "light-detecting organ" RELATED [] synonym: "visual apparatus" RELATED [] is_a: UBERON:0000020 ! sense organ -relationship: BFO:0000050 UBERON:0002104 ! visual system +relationship: BFO:0000050 UBERON:0002104 ! part of visual system [Term] id: UBERON:0000971 @@ -2220,7 +2220,7 @@ synonym: "omatidia" RELATED [] synonym: "omatidium" EXACT [] is_a: UBERON:0000970 ! eye is_a: UBERON:0002536 ! arthropod sensillum -relationship: BFO:0000050 UBERON:0000018 ! compound eye +relationship: BFO:0000050 UBERON:0000018 ! part of compound eye [Term] id: UBERON:0000976 @@ -2236,9 +2236,9 @@ is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone is_a: UBERON:0015053 ! humerus endochondral element -relationship: BFO:0000050 UBERON:0001440 ! forelimb skeleton -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: RO:0002202 UBERON:0006245 ! humerus cartilage element +relationship: BFO:0000050 UBERON:0001440 ! part of forelimb skeleton +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: RO:0002202 UBERON:0006245 ! develops_from humerus cartilage element [Term] id: UBERON:0000977 @@ -2250,13 +2250,13 @@ synonym: "wall of pleural sac" EXACT [] is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0009778 ! pleural sac -intersection_of: BFO:0000051 UBERON:0002400 ! parietal pleura -intersection_of: BFO:0000051 UBERON:0002401 ! visceral pleura -relationship: BFO:0000050 UBERON:0009778 ! pleural sac -relationship: BFO:0000051 UBERON:0002400 ! parietal pleura -relationship: BFO:0000051 UBERON:0002401 ! visceral pleura -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm +intersection_of: BFO:0000050 UBERON:0009778 ! part of pleural sac +intersection_of: BFO:0000051 UBERON:0002400 ! has part parietal pleura +intersection_of: BFO:0000051 UBERON:0002401 ! has part visceral pleura +relationship: BFO:0000050 UBERON:0009778 ! part of pleural sac +relationship: BFO:0000051 UBERON:0002400 ! has part parietal pleura +relationship: BFO:0000051 UBERON:0002401 ! has part visceral pleura +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm [Term] id: UBERON:0000978 @@ -2283,9 +2283,9 @@ is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region is_a: UBERON:0015052 ! femur endochondral element -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0001441 ! hindlimb skeleton -relationship: RO:0002202 UBERON:0010129 ! femur cartilage element +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0001441 ! part of hindlimb skeleton +relationship: RO:0002202 UBERON:0010129 ! develops_from femur cartilage element [Term] id: UBERON:0000982 @@ -2308,8 +2308,8 @@ synonym: "penes" RELATED [] synonym: "phallus" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008811 ! intromittent organ -relationship: RO:0002202 UBERON:0004876 ! urogenital fold -relationship: RO:0002202 UBERON:0005876 ! undifferentiated genital tubercle +relationship: RO:0002202 UBERON:0004876 ! develops_from urogenital fold +relationship: RO:0002202 UBERON:0005876 ! develops_from undifferentiated genital tubercle [Term] id: UBERON:0000990 @@ -2340,7 +2340,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000051 UBERON:0000991 ! gonad +relationship: BFO:0000051 UBERON:0000991 ! has part gonad [Term] id: UBERON:0000991 @@ -2349,7 +2349,7 @@ def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testi synonym: "gonada" EXACT [] synonym: "gonads" RELATED [] is_a: UBERON:0003133 ! reproductive organ -relationship: RO:0002202 UBERON:0005564 ! gonad primordium +relationship: RO:0002202 UBERON:0005564 ! develops_from gonad primordium [Term] id: UBERON:0000992 @@ -2383,9 +2383,9 @@ synonym: "reproductive system of female organism gonada" EXACT [] is_a: UBERON:0000991 ! gonad is_a: UBERON:0003134 ! female reproductive organ intersection_of: UBERON:0000991 ! gonad -intersection_of: BFO:0000050 UBERON:0000474 ! female reproductive system +intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system disjoint_from: UBERON:0009117 ! indifferent gonad -relationship: RO:0002202 UBERON:0009117 ! indifferent gonad +relationship: RO:0002202 UBERON:0009117 ! develops_from indifferent gonad [Term] id: UBERON:0000993 @@ -2401,15 +2401,15 @@ synonym: "tubular parts of female reproductive system" RELATED [] synonym: "uterine tube" EXACT [] is_a: UBERON:0000025 ! tube is_a: UBERON:0005156 ! reproductive structure -relationship: BFO:0000050 UBERON:0000474 ! female reproductive system +relationship: BFO:0000050 UBERON:0000474 ! part of female reproductive system [Term] id: UBERON:0000995 name: uterus def: "the female muscular organ of gestation in which the developing embryo or fetus is nourished until birth" [] is_a: UBERON:0013515 ! subdivision of oviduct -relationship: BFO:0000050 UBERON:0004175 ! internal genitalia -relationship: RO:0002202 UBERON:0005795 ! embryonic uterus +relationship: BFO:0000050 UBERON:0004175 ! part of internal genitalia +relationship: RO:0002495 UBERON:0005795 ! immediate transformation of embryonic uterus [Term] id: UBERON:0000996 @@ -2420,8 +2420,8 @@ synonym: "distal portion of oviduct" RELATED [] synonym: "vaginae" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013515 ! subdivision of oviduct -relationship: BFO:0000050 UBERON:0003975 ! internal female genitalia -relationship: RO:0002202 UBERON:0000164 ! primitive urogenital sinus +relationship: BFO:0000050 UBERON:0003975 ! part of internal female genitalia +relationship: RO:0002202 UBERON:0000164 ! develops_from primitive urogenital sinus [Term] id: UBERON:0000998 @@ -2440,8 +2440,8 @@ synonym: "vesicular seminalis" RELATED [] synonym: "vesiculæ seminales" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006868 ! seminal fluid secreting gland -relationship: BFO:0000050 UBERON:0000473 ! testis -relationship: RO:0002202 UBERON:0000080 ! mesonephros +relationship: BFO:0000050 UBERON:0000473 ! part of testis +relationship: RO:0002202 UBERON:0000080 ! develops_from mesonephros [Term] id: UBERON:0001003 @@ -2453,8 +2453,8 @@ synonym: "vertebrate epidermis" EXACT [] is_a: UBERON:0007376 ! outer epithelium is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:0007376 ! outer epithelium -intersection_of: BFO:0000050 UBERON:0002097 ! skin of body -relationship: BFO:0000050 UBERON:0002097 ! skin of body +intersection_of: BFO:0000050 UBERON:0002097 ! part of skin of body +relationship: BFO:0000050 UBERON:0002097 ! part of skin of body [Term] id: UBERON:0001004 @@ -2488,7 +2488,7 @@ def: "An airway through which respiratory air passes in organisms." [] synonym: "airway" BROAD [] synonym: "airways" BROAD [] is_a: UBERON:0003103 ! compound organ -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0001007 @@ -2584,8 +2584,8 @@ synonym: "musculi" EXACT [] synonym: "set of muscles" EXACT [] synonym: "set of skeletal muscles" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0000383 ! musculature of body -relationship: BFO:0000051 UBERON:0001630 ! muscle organ +relationship: BFO:0000050 UBERON:0000383 ! part of musculature of body +relationship: BFO:0000051 UBERON:0001630 ! has part muscle organ [Term] id: UBERON:0001016 @@ -2605,7 +2605,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: RO:0002202 UBERON:0016880 ! future nervous system +relationship: RO:0002495 UBERON:0016880 ! immediate transformation of future nervous system [Term] id: UBERON:0001017 @@ -2617,8 +2617,8 @@ synonym: "neuraxis" RELATED [] synonym: "systema nervosum centrale" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0001016 ! nervous system -relationship: RO:0002202 UBERON:0016879 ! future central nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system +relationship: RO:0002495 UBERON:0016879 ! immediate transformation of future central nervous system [Term] id: UBERON:0001019 @@ -2640,7 +2640,7 @@ synonym: "nerves" EXACT [] synonym: "neural subtree" RELATED [] synonym: "peripheral nerve" EXACT [] is_a: UBERON:0000122 ! neuron projection bundle -relationship: BFO:0000050 UBERON:0000010 ! peripheral nervous system +relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0001032 @@ -2656,7 +2656,7 @@ synonym: "sensory subsystem" EXACT [] synonym: "sensory systems" EXACT [] synonym: "set of sense organs" RELATED [] is_a: UBERON:0000467 ! anatomical system -relationship: BFO:0000050 UBERON:0004456 ! entire sense organ system +relationship: BFO:0000050 UBERON:0004456 ! part of entire sense organ system [Term] id: UBERON:0001033 @@ -2691,9 +2691,9 @@ synonym: "whisker" RELATED [] is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis -relationship: BFO:0000050 UBERON:0011932 ! pilosebaceous unit -relationship: RO:0002202 UBERON:0002073 ! hair follicle +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis +relationship: BFO:0000050 UBERON:0011932 ! part of pilosebaceous unit +relationship: RO:0002202 UBERON:0002073 ! develops_from hair follicle [Term] id: UBERON:0001040 @@ -2719,8 +2719,8 @@ name: chordate pharynx def: "A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]." [] synonym: "pharynx" BROAD [] is_a: UBERON:0006562 ! pharynx -relationship: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: RO:0002202 UBERON:0009145 ! pharyngeal region of foregut +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: RO:0002202 UBERON:0009145 ! develops_from pharyngeal region of foregut [Term] id: UBERON:0001043 @@ -2732,7 +2732,7 @@ is_a: UBERON:0000062 ! organ is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0004908 ! upper digestive tract +relationship: BFO:0000050 UBERON:0004908 ! part of upper digestive tract [Term] id: UBERON:0001044 @@ -2755,7 +2755,7 @@ name: hindgut def: "The caudalmost subdivision of a digestive tract." [] synonym: "metenteron" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: RO:0002202 UBERON:0003104 ! mesenchyme +relationship: RO:0002202 UBERON:0003104 ! develops_from mesenchyme [Term] id: UBERON:0001048 @@ -2767,7 +2767,7 @@ synonym: "placode" RELATED [] synonym: "primordia" RELATED [] synonym: "rudiment" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0001049 @@ -2780,7 +2780,7 @@ is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system -relationship: RO:0002202 UBERON:0005068 ! neural rod +relationship: RO:0002202 UBERON:0005068 ! develops_from neural rod [Term] id: UBERON:0001052 @@ -2791,9 +2791,9 @@ synonym: "rectal sac" RELATED [] synonym: "terminal portion of intestine" EXACT [] synonym: "terminal portion of large intestine" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0006866 ! terminal part of digestive tract -relationship: BFO:0000050 UBERON:0012361 ! internal anal region +relationship: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract +relationship: BFO:0000050 UBERON:0012361 ! part of internal anal region [Term] id: UBERON:0001054 @@ -2821,7 +2821,7 @@ synonym: "hepaticopancreatic duct" RELATED [] synonym: "main pancreatic duct" EXACT [] synonym: "pancreatic duct" BROAD [] is_a: UBERON:0007329 ! pancreatic duct -relationship: RO:0002202 UBERON:0003924 ! ventral pancreatic bud +relationship: RO:0002202 UBERON:0003924 ! develops_from ventral pancreatic bud [Term] id: UBERON:0001066 @@ -2834,8 +2834,8 @@ synonym: "spinal disc" EXACT [] synonym: "spinal disk" RELATED [] is_a: UBERON:0011135 ! intervertebral cartilage intersection_of: UBERON:0011135 ! intervertebral cartilage -intersection_of: BFO:0000051 UBERON:0002242 ! nucleus pulposus -relationship: BFO:0000051 UBERON:0002242 ! nucleus pulposus +intersection_of: BFO:0000051 UBERON:0002242 ! has part nucleus pulposus +relationship: BFO:0000051 UBERON:0002242 ! has part nucleus pulposus [Term] id: UBERON:0001068 @@ -2847,8 +2847,8 @@ synonym: "skin, dorsal region" EXACT [] synonym: "zone of skin of back" EXACT [] is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0011270 ! dorsal trunk +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0011270 ! part of dorsal trunk [Term] id: UBERON:0001074 @@ -2859,8 +2859,8 @@ synonym: "cavity of pericardial sac" EXACT [] synonym: "pericardial space" EXACT [] is_a: UBERON:0002323 ! coelemic cavity lumen is_a: UBERON:0035809 ! serous cavity -relationship: BFO:0000050 UBERON:0002406 ! pericardial sac -relationship: RO:0002202 UBERON:0003887 ! intraembryonic coelom +relationship: BFO:0000050 UBERON:0002406 ! part of pericardial sac +relationship: RO:0002202 UBERON:0003887 ! develops_from intraembryonic coelom [Term] id: UBERON:0001081 @@ -2882,8 +2882,8 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002165 ! endocardium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002165 ! endocardium -intersection_of: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0004784 ! heart ventricle wall +intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0004784 ! part of heart ventricle wall [Term] id: UBERON:0001082 @@ -2893,8 +2893,8 @@ synonym: "cardiac ventricle epicardium" EXACT [] synonym: "ventricular epicardium" EXACT [] is_a: UBERON:0002348 ! epicardium intersection_of: UBERON:0002348 ! epicardium -intersection_of: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0002082 ! cardiac ventricle +intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle [Term] id: UBERON:0001083 @@ -2905,8 +2905,8 @@ synonym: "ventricle myocardium" EXACT [] synonym: "ventricular myocardium" EXACT [] is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium -intersection_of: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0004784 ! heart ventricle wall +intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0004784 ! part of heart ventricle wall [Term] id: UBERON:0001084 @@ -2919,8 +2919,8 @@ synonym: "zone of skin of adult head" EXACT [] synonym: "zone of skin of head" EXACT [] is_a: UBERON:0012180 ! head or neck skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0001085 @@ -2933,8 +2933,8 @@ synonym: "zone of skin of torso" EXACT [] synonym: "zone of skin of trunk" EXACT [] is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0001091 @@ -2947,8 +2947,8 @@ synonym: "vertebrate tooth" EXACT [] is_a: UBERON:0003913 ! tooth-like structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000051 UBERON:0001751 ! dentine -relationship: RO:0002202 UBERON:0008281 ! tooth bud +relationship: BFO:0000051 UBERON:0001751 ! has part dentine +relationship: RO:0002495 UBERON:0008281 ! immediate transformation of tooth bud [Term] id: UBERON:0001096 @@ -2968,8 +2968,8 @@ synonym: "wall of gullet" EXACT [] synonym: "wall of oesophagus" EXACT [] is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0001118 @@ -2984,8 +2984,8 @@ is_a: UBERON:0009912 ! anatomical lobe is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035075 ! thymus subunit intersection_of: UBERON:0009912 ! anatomical lobe -intersection_of: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: BFO:0000050 UBERON:0002046 ! thyroid gland +intersection_of: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: BFO:0000050 UBERON:0002046 ! part of thyroid gland [Term] id: UBERON:0001130 @@ -2999,8 +2999,8 @@ synonym: "spine" BROAD [] synonym: "vertebral column skeleton" NARROW [] synonym: "vertebral region" RELATED [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0011138 ! postcranial axial skeletal system -relationship: BFO:0000051 UBERON:0010913 ! vertebral element +relationship: BFO:0000050 UBERON:0011138 ! part of postcranial axial skeletal system +relationship: BFO:0000051 UBERON:0010913 ! has part vertebral element [Term] id: UBERON:0001132 @@ -3040,7 +3040,7 @@ synonym: "textus muscularis of myocardium" EXACT [] is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0001134 ! skeletal muscle tissue -relationship: BFO:0000050 UBERON:0000948 ! heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0001134 @@ -3050,7 +3050,7 @@ synonym: "skeletal muscle" BROAD [] synonym: "skeletal muscle system" RELATED [] synonym: "somatic muscle" RELATED [] is_a: UBERON:0002036 ! striated muscle tissue -relationship: BFO:0000050 UBERON:0014892 ! skeletal muscle organ +relationship: BFO:0000050 UBERON:0014892 ! part of skeletal muscle organ [Term] id: UBERON:0001135 @@ -3073,9 +3073,9 @@ def: "Simple squamous epithelium of mesodermal origin which lines serous membran is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000487 ! simple squamous epithelium -intersection_of: BFO:0000050 UBERON:0000042 ! serous membrane -intersection_of: RO:0002202 UBERON:0000926 ! mesoderm -relationship: BFO:0000050 UBERON:0000042 ! serous membrane +intersection_of: BFO:0000050 UBERON:0000042 ! part of serous membrane +intersection_of: RO:0002202 UBERON:0000926 ! develops_from mesoderm +relationship: BFO:0000050 UBERON:0000042 ! part of serous membrane [Term] id: UBERON:0001137 @@ -3103,8 +3103,8 @@ def: "the tubular structure that conducts gall bladder contents from the gall bl synonym: "ductus cysticus" RELATED [] is_a: UBERON:0003703 ! extrahepatic bile duct disjoint_from: UBERON:0005171 ! hepatic duct -relationship: BFO:0000050 UBERON:0001173 ! biliary tree -relationship: RO:0002202 UBERON:0005604 ! extrahepatic part of hepatic duct +relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree +relationship: RO:0002202 UBERON:0005604 ! develops_from extrahepatic part of hepatic duct [Term] id: UBERON:0001153 @@ -3120,9 +3120,9 @@ synonym: "intestinum caecum" RELATED [] synonym: "intestinum crassum caecum" EXACT [] synonym: "intestinum crassum cecum" RELATED [] is_a: UBERON:0009854 ! digestive tract diverticulum -relationship: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001155 ! colon -relationship: RO:0002202 UBERON:0001045 ! midgut +relationship: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001155 ! part of colon +relationship: RO:0002202 UBERON:0001045 ! develops_from midgut [Term] id: UBERON:0001154 @@ -3137,9 +3137,9 @@ synonym: "caecal appendix" EXACT [] synonym: "cecal appendix" EXACT [] synonym: "vermix" BROAD [] is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0004907 ! lower digestive tract -relationship: RO:0002202 UBERON:0001045 ! midgut +relationship: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0004907 ! part of lower digestive tract +relationship: RO:0002202 UBERON:0001045 ! develops_from midgut [Term] id: UBERON:0001155 @@ -3149,7 +3149,7 @@ synonym: "hindgut" RELATED [] synonym: "large bowel" EXACT [] synonym: "posterior intestine" NARROW [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0000059 ! large intestine +relationship: BFO:0000050 UBERON:0000059 ! part of large intestine [Term] id: UBERON:0001156 @@ -3158,7 +3158,7 @@ def: "Section of colon which is distal to the cecum and proximal to the transver synonym: "colon ascendens" EXACT [] synonym: "spiral colon" RELATED [] is_a: UBERON:0000168 ! proximal-distal subdivision of colon -relationship: RO:0002202 UBERON:0001045 ! midgut +relationship: RO:0002202 UBERON:0001045 ! develops_from midgut [Term] id: UBERON:0001157 @@ -3166,7 +3166,7 @@ name: transverse colon def: "The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]." [] synonym: "colon transversum" EXACT [] is_a: UBERON:0000168 ! proximal-distal subdivision of colon -relationship: RO:0002202 UBERON:0001045 ! midgut +relationship: RO:0002202 UBERON:0001045 ! develops_from midgut [Term] id: UBERON:0001158 @@ -3174,7 +3174,7 @@ name: descending colon def: "The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon." [] synonym: "colon descendens" EXACT [] is_a: UBERON:0000168 ! proximal-distal subdivision of colon -relationship: RO:0002202 UBERON:0001046 ! hindgut +relationship: RO:0002202 UBERON:0001046 ! develops_from hindgut [Term] id: UBERON:0001159 @@ -3185,7 +3185,7 @@ synonym: "pelvic colon" RELATED [] synonym: "sigmoid colon" RELATED [] synonym: "sigmoid flexure" RELATED [] is_a: UBERON:0000168 ! proximal-distal subdivision of colon -relationship: RO:0002202 UBERON:0001046 ! hindgut +relationship: RO:0002202 UBERON:0001046 ! develops_from hindgut [Term] id: UBERON:0001160 @@ -3199,7 +3199,7 @@ synonym: "fundus ventriculi" RELATED [] synonym: "gastric fundus" EXACT [] synonym: "stomach fundus" EXACT [] is_a: UBERON:0009870 ! zone of stomach -relationship: BFO:0000051 UBERON:0010038 ! fundic gastric gland +relationship: BFO:0000051 UBERON:0010038 ! has part fundic gastric gland [Term] id: UBERON:0001162 @@ -3217,8 +3217,8 @@ synonym: "pars cardiaca gastricae" EXACT [] synonym: "stomach cardiac region" EXACT [] is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach -intersection_of: BFO:0000051 UBERON:0008859 ! cardiac gastric gland -relationship: BFO:0000051 UBERON:0008859 ! cardiac gastric gland +intersection_of: BFO:0000051 UBERON:0008859 ! has part cardiac gastric gland +relationship: BFO:0000051 UBERON:0008859 ! has part cardiac gastric gland [Term] id: UBERON:0001165 @@ -3233,7 +3233,7 @@ synonym: "gastric antrum" RELATED [] synonym: "stomach antrum" RELATED [] synonym: "stomach pyloric antrum" EXACT [] is_a: UBERON:0009870 ! zone of stomach -relationship: BFO:0000050 UBERON:0001166 ! pylorus +relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0001166 @@ -3247,12 +3247,12 @@ synonym: "stomach pyloric region" EXACT [] synonym: "valvula pylori" RELATED [] is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach -intersection_of: BFO:0000051 UBERON:0001165 ! pyloric antrum -intersection_of: BFO:0000051 UBERON:0008858 ! pyloric canal -intersection_of: BFO:0000051 UBERON:0008861 ! pyloric gastric gland -relationship: BFO:0000051 UBERON:0001165 ! pyloric antrum -relationship: BFO:0000051 UBERON:0008858 ! pyloric canal -relationship: BFO:0000051 UBERON:0008861 ! pyloric gastric gland +intersection_of: BFO:0000051 UBERON:0001165 ! has part pyloric antrum +intersection_of: BFO:0000051 UBERON:0008858 ! has part pyloric canal +intersection_of: BFO:0000051 UBERON:0008861 ! has part pyloric gastric gland +relationship: BFO:0000051 UBERON:0001165 ! has part pyloric antrum +relationship: BFO:0000051 UBERON:0008858 ! has part pyloric canal +relationship: BFO:0000051 UBERON:0008861 ! has part pyloric gastric gland [Term] id: UBERON:0001167 @@ -3268,8 +3268,8 @@ synonym: "ventriculus wall" EXACT [] synonym: "wall of ventriculus" EXACT [] is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0000945 ! stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0000945 ! part of stomach [Term] id: UBERON:0001168 @@ -3285,8 +3285,8 @@ synonym: "small intestine wall" EXACT [] synonym: "wall of small bowel" EXACT [] is_a: UBERON:0001262 ! wall of intestine intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0002108 ! small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0001169 @@ -3298,8 +3298,8 @@ synonym: "large intestine anatomical wall" EXACT [] synonym: "large intestine wall" EXACT [] is_a: UBERON:0001262 ! wall of intestine intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0000059 ! large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0000059 ! part of large intestine [Term] id: UBERON:0001170 @@ -3313,7 +3313,7 @@ is_a: UBERON:0001206 ! serosa of small intestine is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 ! peritoneal mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0001171 @@ -3321,7 +3321,7 @@ name: portal lobule def: "The triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 ! lobule -relationship: BFO:0000050 UBERON:0001280 ! liver parenchyma +relationship: BFO:0000050 UBERON:0001280 ! part of liver parenchyma [Term] id: UBERON:0001172 @@ -3332,7 +3332,7 @@ synonym: "portal acinus" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009842 ! glandular acinus is_a: UBERON:0011858 ! acinus of exocrine gland -relationship: BFO:0000050 UBERON:0001280 ! liver parenchyma +relationship: BFO:0000050 UBERON:0001280 ! part of liver parenchyma [Term] id: UBERON:0001173 @@ -3341,12 +3341,12 @@ def: "A complex network of conduits that begins with the canals of Hering (intra synonym: "biliary tract" RELATED [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0002294 ! biliary system -relationship: BFO:0000051 UBERON:0001246 ! interlobular bile duct -relationship: BFO:0000051 UBERON:0001282 ! intralobular bile duct -relationship: BFO:0000051 UBERON:0002394 ! bile duct -relationship: BFO:0000051 UBERON:0003703 ! extrahepatic bile duct -relationship: RO:0002202 UBERON:0004912 ! biliary bud +relationship: BFO:0000050 UBERON:0002294 ! part of biliary system +relationship: BFO:0000051 UBERON:0001246 ! has part interlobular bile duct +relationship: BFO:0000051 UBERON:0001282 ! has part intralobular bile duct +relationship: BFO:0000051 UBERON:0002394 ! has part bile duct +relationship: BFO:0000051 UBERON:0003703 ! has part extrahepatic bile duct +relationship: RO:0002202 UBERON:0004912 ! develops_from biliary bud [Term] id: UBERON:0001178 @@ -3355,8 +3355,8 @@ def: "The inner layer of peritoneum that is wrapped around organs located inside synonym: "visceral serous membrane of peritoneum" EXACT [] is_a: UBERON:0022350 ! visceral serous membrane intersection_of: UBERON:0022350 ! visceral serous membrane -intersection_of: BFO:0000050 UBERON:0002358 ! peritoneum -relationship: BFO:0000050 UBERON:0002358 ! peritoneum +intersection_of: BFO:0000050 UBERON:0002358 ! part of peritoneum +relationship: BFO:0000050 UBERON:0002358 ! part of peritoneum [Term] id: UBERON:0001179 @@ -3365,8 +3365,8 @@ def: "Anatomical cavity bounded by visceral and parietal peritoneum" [] synonym: "cavitas peritonealis" RELATED [] synonym: "saccus serosus peritonei" RELATED [] is_a: UBERON:0035809 ! serous cavity -relationship: BFO:0000050 UBERON:0035820 ! peritoneal sac -relationship: RO:0002202 UBERON:0003887 ! intraembryonic coelom +relationship: BFO:0000050 UBERON:0035820 ! part of peritoneal sac +relationship: RO:0002202 UBERON:0003887 ! develops_from intraembryonic coelom [Term] id: UBERON:0001193 @@ -3403,8 +3403,8 @@ synonym: "ventriculus mucous membrane" EXACT [] synonym: "ventriculus organ mucosa" EXACT [] is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0001167 ! wall of stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach [Term] id: UBERON:0001200 @@ -3420,8 +3420,8 @@ synonym: "tela submucosa ventriculi" RELATED [] synonym: "ventriculus submucosa" EXACT [] is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0001167 ! wall of stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach [Term] id: UBERON:0001201 @@ -3471,8 +3471,8 @@ synonym: "wall of ventriculus serosa" EXACT [] synonym: "wall of ventriculus serous membrane" EXACT [] is_a: UBERON:0004782 ! gastrointestinal system serosa intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001167 ! wall of stomach -relationship: BFO:0000050 UBERON:0001167 ! wall of stomach +intersection_of: BFO:0000050 UBERON:0001167 ! part of wall of stomach +relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach [Term] id: UBERON:0001202 @@ -3481,8 +3481,8 @@ def: "A strong ring of smooth muscle at the end of the pyloric canal which lets synonym: "pyloric valve" EXACT [] is_a: UBERON:0011185 ! gastrointestinal sphincter intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0001166 ! pylorus -relationship: BFO:0000050 UBERON:0001166 ! pylorus +intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus +relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0001204 @@ -3508,8 +3508,8 @@ synonym: "tunica mucosa (intestinum tenue)" EXACT [] synonym: "tunica mucosa intestini tenuis" EXACT [] is_a: UBERON:0001242 ! intestinal mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001168 ! wall of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0001205 @@ -3523,8 +3523,8 @@ synonym: "tela submucosa (intestinum tenue)" EXACT [] synonym: "tela submucosa intestini tenuis" EXACT [] is_a: UBERON:0009566 ! intestinal submucosa intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001168 ! wall of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0001206 @@ -3544,8 +3544,8 @@ synonym: "tunica serosa intestini tenuis" EXACT [] synonym: "visceral peritoneum of small intestine" EXACT [] is_a: UBERON:0001243 ! serosa of intestine intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001168 ! wall of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0001207 @@ -3562,8 +3562,8 @@ synonym: "organ mucosa of large intestine" EXACT [] synonym: "tunica mucosa intestini crassi" EXACT [] is_a: UBERON:0001242 ! intestinal mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001169 ! wall of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0001208 @@ -3575,8 +3575,8 @@ synonym: "submucous layer of large intestine" RELATED [] synonym: "tela submucosa intestini crassi" EXACT [] is_a: UBERON:0009566 ! intestinal submucosa intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001169 ! wall of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0001209 @@ -3591,8 +3591,8 @@ synonym: "tunica serosa intestini crassi" EXACT [] synonym: "visceral peritoneum of large intestine" EXACT [] is_a: UBERON:0001243 ! serosa of intestine intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001169 ! wall of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0001211 @@ -3604,8 +3604,8 @@ synonym: "noduli lymphoidei aggregati" EXACT [] synonym: "Peyers gland" RELATED [] synonym: "Peyers patch" RELATED [] is_a: UBERON:0001962 ! gut-associated lymphoid tissue -relationship: BFO:0000050 UBERON:0000030 ! lamina propria -relationship: BFO:0000050 UBERON:0001242 ! intestinal mucosa +relationship: BFO:0000050 UBERON:0000030 ! part of lamina propria +relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa [Term] id: UBERON:0001212 @@ -3620,9 +3620,9 @@ is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0011148 ! submucosal gland intersection_of: UBERON:0011148 ! submucosal gland -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002330 ! exocrine system +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002330 ! part of exocrine system [Term] id: UBERON:0001213 @@ -3639,9 +3639,9 @@ synonym: "villi intestinales" RELATED [] synonym: "villus" EXACT [] synonym: "villus intestinalis (intestinum tenue)" EXACT [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0001277 ! intestinal epithelium -relationship: BFO:0000051 UBERON:0001981 ! blood vessel -relationship: BFO:0000051 UBERON:0012425 ! striated border microvillus layer +relationship: BFO:0000050 UBERON:0001277 ! part of intestinal epithelium +relationship: BFO:0000051 UBERON:0001981 ! has part blood vessel +relationship: BFO:0000051 UBERON:0012425 ! has part striated border microvillus layer [Term] id: UBERON:0001224 @@ -3654,8 +3654,8 @@ synonym: "pyelum" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0002113 ! kidney +relationship: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0001225 @@ -3666,8 +3666,8 @@ synonym: "kidney cortex" EXACT [] synonym: "renal cortex" EXACT [] is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0008987 ! renal parenchyma +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0008987 ! part of renal parenchyma [Term] id: UBERON:0001228 @@ -3676,8 +3676,8 @@ def: "Tip of renal pyramid projecting into a minor calyx." [] synonym: "kidney papilla" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001224 ! renal pelvis -relationship: BFO:0000050 UBERON:0001294 ! inner medulla of kidney +relationship: BFO:0000050 UBERON:0001224 ! part of renal pelvis +relationship: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney [Term] id: UBERON:0001229 @@ -3690,9 +3690,9 @@ synonym: "kidney corpuscle" RELATED [] synonym: "Malphigian corpuscle" EXACT [] synonym: "Malpighian corpuscle" EXACT [] is_a: UBERON:0000063 ! organ subunit -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0001285 ! nephron -relationship: BFO:0000050 UBERON:0007684 ! uriniferous tubule +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0001285 ! part of nephron +relationship: BFO:0000050 UBERON:0007684 ! part of uriniferous tubule [Term] id: UBERON:0001230 @@ -3710,8 +3710,8 @@ synonym: "Muellerian capsule" RELATED [] synonym: "pronephric glomerular capsule" RELATED [] synonym: "renal glomerular capsule" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0001229 ! renal corpuscle -relationship: RO:0002202 UBERON:0004199 ! S-shaped body +relationship: BFO:0000050 UBERON:0001229 ! part of renal corpuscle +relationship: RO:0002202 UBERON:0004199 ! develops_from S-shaped body [Term] id: UBERON:0001231 @@ -3724,8 +3724,8 @@ synonym: "uriniferous tubule" RELATED [] is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0009773 ! renal tubule intersection_of: UBERON:0003914 ! epithelial tube -intersection_of: BFO:0000050 UBERON:0001285 ! nephron -relationship: RO:0002202 UBERON:0003918 ! kidney mesenchyme +intersection_of: BFO:0000050 UBERON:0001285 ! part of nephron +relationship: RO:0002202 UBERON:0003918 ! develops_from kidney mesenchyme [Term] id: UBERON:0001232 @@ -3743,8 +3743,8 @@ synonym: "tubulus renalis arcuatus" EXACT [] synonym: "tubulus renalis colligens" EXACT [] synonym: "ureteric tree" RELATED [] is_a: UBERON:0006555 ! excretory tube -relationship: BFO:0000050 UBERON:0001285 ! nephron -relationship: BFO:0000050 UBERON:0007684 ! uriniferous tubule +relationship: BFO:0000050 UBERON:0001285 ! part of nephron +relationship: BFO:0000050 UBERON:0007684 ! part of uriniferous tubule [Term] id: UBERON:0001235 @@ -3761,9 +3761,9 @@ is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001851 ! cortex -intersection_of: BFO:0000050 UBERON:0002369 ! adrenal gland -relationship: BFO:0000050 UBERON:0002369 ! adrenal gland -relationship: RO:0002202 UBERON:0000926 ! mesoderm +intersection_of: BFO:0000050 UBERON:0002369 ! part of adrenal gland +relationship: BFO:0000050 UBERON:0002369 ! part of adrenal gland +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0001236 @@ -3782,9 +3782,9 @@ is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0002369 ! adrenal gland -relationship: BFO:0000050 UBERON:0002369 ! adrenal gland -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: BFO:0000050 UBERON:0002369 ! part of adrenal gland +relationship: BFO:0000050 UBERON:0002369 ! part of adrenal gland +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0001237 @@ -3814,9 +3814,9 @@ synonym: "small intestine lamina propria mucosa" EXACT [] synonym: "small intestine lamina propria mucosae" EXACT [] is_a: UBERON:0004780 ! gastrointestinal system lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001168 ! wall of small intestine -relationship: BFO:0000050 UBERON:0001204 ! mucosa of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine +relationship: BFO:0000050 UBERON:0001204 ! part of mucosa of small intestine [Term] id: UBERON:0001241 @@ -3837,8 +3837,8 @@ synonym: "small intestine intestinal gland" EXACT [] synonym: "small intestine lieberkuhn crypt" EXACT [] is_a: UBERON:0001983 ! crypt of Lieberkuhn intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0002108 ! small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0001242 @@ -3863,8 +3863,8 @@ synonym: "organ mucosa of intestine" EXACT [] synonym: "tunica mucosa intestini" EXACT [] is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0001262 ! wall of intestine +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0001243 @@ -3911,8 +3911,8 @@ synonym: "wall of intestine serosa" EXACT [] synonym: "wall of intestine serous membrane" EXACT [] is_a: UBERON:0004782 ! gastrointestinal system serosa intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0001262 ! wall of intestine +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0001246 @@ -3920,7 +3920,7 @@ name: interlobular bile duct def: "The canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [] synonym: "interlobular ductule" EXACT [] is_a: UBERON:0003704 ! intrahepatic bile duct -relationship: BFO:0000050 UBERON:0001279 ! portal triad +relationship: BFO:0000050 UBERON:0001279 ! part of portal triad [Term] id: UBERON:0001249 @@ -3939,10 +3939,10 @@ synonym: "splenic lymphoid follicle" EXACT [] is_a: UBERON:0000444 ! lymphoid follicle is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000444 ! lymphoid follicle -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: BFO:0000050 UBERON:0001959 ! white pulp of spleen -relationship: BFO:0000050 UBERON:0006561 ! non-lymphatic part of lymphoid system -relationship: BFO:0000050 UBERON:1000024 ! parenchyma of spleen +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: BFO:0000050 UBERON:0001959 ! part of white pulp of spleen +relationship: BFO:0000050 UBERON:0006561 ! part of non-lymphatic part of lymphoid system +relationship: BFO:0000050 UBERON:1000024 ! part of parenchyma of spleen [Term] id: UBERON:0001250 @@ -3964,7 +3964,7 @@ synonym: "marginal zone" BROAD [] synonym: "spleen marginal zone" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0002106 ! spleen +relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0001252 @@ -3978,8 +3978,8 @@ synonym: "ureteral adventitia" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0009916 ! wall of ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0001253 @@ -3993,9 +3993,9 @@ synonym: "ureter lamina propria mucosae" EXACT [] is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0004980 ! mucosa of ureter -relationship: BFO:0000050 UBERON:0009916 ! wall of ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0004980 ! part of mucosa of ureter +relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0001254 @@ -4009,8 +4009,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! urothelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000365 ! urothelium -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0000056 ! ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0000056 ! part of ureter [Term] id: UBERON:0001255 @@ -4023,8 +4023,8 @@ synonym: "vesica urinaria" EXACT [] is_a: UBERON:0002075 ! viscus is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018707 ! bladder organ -relationship: BFO:0000050 UBERON:0001556 ! lower urinary tract -relationship: RO:0002202 UBERON:0000164 ! primitive urogenital sinus +relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract +relationship: RO:0002202 UBERON:0000164 ! develops_from primitive urogenital sinus [Term] id: UBERON:0001256 @@ -4040,8 +4040,8 @@ synonym: "wall of bladder" EXACT [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001255 ! urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder [Term] id: UBERON:0001257 @@ -4059,7 +4059,7 @@ synonym: "urinary bladder trigone" EXACT [] synonym: "vesical trigone" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0006082 ! fundus of urinary bladder +relationship: BFO:0000050 UBERON:0006082 ! part of fundus of urinary bladder [Term] id: UBERON:0001258 @@ -4075,8 +4075,8 @@ synonym: "vesical neck" EXACT [] is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001560 ! neck of organ -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001255 ! urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder [Term] id: UBERON:0001259 @@ -4096,8 +4096,8 @@ synonym: "urinary bladder mucous membrane" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001256 ! wall of urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder [Term] id: UBERON:0001260 @@ -4117,8 +4117,8 @@ synonym: "urinary bladder serous membrane" EXACT [] synonym: "visceral peritoneum of urinary bladder" EXACT [] is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001256 ! wall of urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder [Term] id: UBERON:0001261 @@ -4138,9 +4138,9 @@ synonym: "urinary bladder lamina propria mucosae" EXACT [] is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001256 ! wall of urinary bladder -relationship: BFO:0000050 UBERON:0001259 ! mucosa of urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder +relationship: BFO:0000050 UBERON:0001259 ! part of mucosa of urinary bladder [Term] id: UBERON:0001262 @@ -4157,8 +4157,8 @@ synonym: "intestine wall" EXACT [] synonym: "wall of bowel" EXACT [] is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0000160 ! intestine +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0000160 ! part of intestine [Term] id: UBERON:0001263 @@ -4171,15 +4171,15 @@ synonym: "pancreatic acini" RELATED [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013232 ! serous acinus intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0000017 ! exocrine pancreas -relationship: BFO:0000050 UBERON:0007324 ! pancreatic lobule +intersection_of: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas +relationship: BFO:0000050 UBERON:0007324 ! part of pancreatic lobule [Term] id: UBERON:0001264 name: pancreas def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]." [] is_a: UBERON:0002075 ! viscus -relationship: BFO:0000051 UBERON:0000016 ! endocrine pancreas +relationship: BFO:0000051 UBERON:0000016 ! has part endocrine pancreas [Term] id: UBERON:0001266 @@ -4189,7 +4189,7 @@ synonym: "cord of Billroth" EXACT [] synonym: "cord of Bilroth" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001250 ! red pulp of spleen +relationship: BFO:0000050 UBERON:0001250 ! part of red pulp of spleen [Term] id: UBERON:0001271 @@ -4200,11 +4200,11 @@ synonym: "pelvic girdle" RELATED [] is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007823 ! appendage girdle region -intersection_of: BFO:0000050 UBERON:0010709 ! pelvic complex +intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex disjoint_from: UBERON:0007832 ! pelvic girdle skeleton -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0010709 ! pelvic complex -relationship: BFO:0000051 UBERON:0007832 ! pelvic girdle skeleton +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex +relationship: BFO:0000051 UBERON:0007832 ! has part pelvic girdle skeleton [Term] id: UBERON:0001276 @@ -4223,8 +4223,8 @@ is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0004808 ! gastrointestinal system epithelium is_a: UBERON:0015833 ! foregut epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0001199 ! mucosa of stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0001199 ! part of mucosa of stomach [Term] id: UBERON:0001277 @@ -4244,8 +4244,8 @@ is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0001242 ! intestinal mucosa +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa [Term] id: UBERON:0001278 @@ -4257,8 +4257,8 @@ synonym: "large intestine epithelial tissue" EXACT [] synonym: "large intestine epithelium" EXACT [] is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001207 ! mucosa of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001207 ! part of mucosa of large intestine [Term] id: UBERON:0001279 @@ -4268,10 +4268,10 @@ synonym: "trias hepatica" EXACT [] synonym: "trias hepatica" RELATED [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0001172 ! hepatic acinus -relationship: BFO:0000051 UBERON:0001193 ! hepatic artery -relationship: BFO:0000051 UBERON:0002017 ! portal vein -relationship: BFO:0000051 UBERON:0003704 ! intrahepatic bile duct +relationship: BFO:0000050 UBERON:0001172 ! part of hepatic acinus +relationship: BFO:0000051 UBERON:0001193 ! has part hepatic artery +relationship: BFO:0000051 UBERON:0002017 ! has part portal vein +relationship: BFO:0000051 UBERON:0003704 ! has part intrahepatic bile duct [Term] id: UBERON:0001280 @@ -4284,9 +4284,9 @@ synonym: "parenchyma of liver" EXACT [] is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0002107 ! liver -relationship: RO:0002202 UBERON:0008835 ! hepatic diverticulum +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0002107 ! part of liver +relationship: RO:0002202 UBERON:0008835 ! develops_from hepatic diverticulum [Term] id: UBERON:0001281 @@ -4304,9 +4304,9 @@ is_a: UBERON:0003909 ! sinusoid is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0003909 ! sinusoid -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0004647 ! liver lobule -relationship: BFO:0000050 UBERON:0006877 ! vasculature of liver +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0004647 ! part of liver lobule +relationship: BFO:0000050 UBERON:0006877 ! part of vasculature of liver [Term] id: UBERON:0001282 @@ -4321,8 +4321,8 @@ synonym: "ductus interlobularis bilifer" EXACT [] synonym: "intrahepatic bile ductule" RELATED [] is_a: UBERON:0003704 ! intrahepatic bile duct is_a: UBERON:0014716 ! interlobular duct -relationship: BFO:0000050 UBERON:0001172 ! hepatic acinus -relationship: BFO:0000050 UBERON:0004647 ! liver lobule +relationship: BFO:0000050 UBERON:0001172 ! part of hepatic acinus +relationship: BFO:0000050 UBERON:0004647 ! part of liver lobule [Term] id: UBERON:0001285 @@ -4332,9 +4332,9 @@ synonym: "mature nephron" NARROW [] synonym: "nephroneum" RELATED [] synonym: "tubulus renalis" RELATED [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0007684 ! uriniferous tubule -relationship: RO:0002202 UBERON:0004208 ! nephrogenic mesenchyme -relationship: RO:0002202 UBERON:0010532 ! primitive nephron +relationship: BFO:0000050 UBERON:0007684 ! part of uriniferous tubule +relationship: RO:0002202 UBERON:0004208 ! develops_from nephrogenic mesenchyme +relationship: RO:0002495 UBERON:0010532 ! immediate transformation of primitive nephron [Term] id: UBERON:0001287 @@ -4352,9 +4352,9 @@ synonym: "tubulus convolutus proximalis" RELATED [] is_a: UBERON:0006534 ! renal convoluted tubule is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0012275 ! meso-epithelium -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0004134 ! proximal tubule -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0004134 ! part of proximal tubule +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme [Term] id: UBERON:0001288 @@ -4373,7 +4373,7 @@ synonym: "descending limb" BROAD [] synonym: "descending limb of Henle's loop" EXACT [] synonym: "loop of Henle descending limb" EXACT [] is_a: UBERON:0007685 ! region of nephron tubule -relationship: BFO:0000050 UBERON:0001288 ! loop of Henle +relationship: BFO:0000050 UBERON:0001288 ! part of loop of Henle [Term] id: UBERON:0001290 @@ -4388,9 +4388,9 @@ synonym: "thick descending limb of proximal tubule" EXACT [] synonym: "tubulus rectus proximalis" EXACT [] is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0009035 ! renal straight tubule -relationship: BFO:0000050 UBERON:0001289 ! descending limb of loop of Henle -relationship: BFO:0000050 UBERON:0004134 ! proximal tubule -relationship: BFO:0000050 UBERON:0006542 ! outer medulla outer stripe loop of Henle +relationship: BFO:0000050 UBERON:0001289 ! part of descending limb of loop of Henle +relationship: BFO:0000050 UBERON:0004134 ! part of proximal tubule +relationship: BFO:0000050 UBERON:0006542 ! part of outer medulla outer stripe loop of Henle [Term] id: UBERON:0001291 @@ -4407,8 +4407,8 @@ synonym: "thick ascending limb of Henle's loop" EXACT [] synonym: "tubulus rectus distalis" EXACT [] synonym: "tubulus rectus distalis" RELATED [] is_a: UBERON:0009035 ! renal straight tubule -relationship: BFO:0000050 UBERON:0004135 ! distal tubule -relationship: BFO:0000050 UBERON:0005164 ! ascending limb of loop of Henle +relationship: BFO:0000050 UBERON:0004135 ! part of distal tubule +relationship: BFO:0000050 UBERON:0005164 ! part of ascending limb of loop of Henle [Term] id: UBERON:0001292 @@ -4422,8 +4422,8 @@ synonym: "tubulus convolutus distalis" RELATED [] is_a: UBERON:0006534 ! renal convoluted tubule is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0012275 ! meso-epithelium -relationship: BFO:0000050 UBERON:0004135 ! distal tubule -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme +relationship: BFO:0000050 UBERON:0004135 ! part of distal tubule +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme [Term] id: UBERON:0001293 @@ -4438,7 +4438,7 @@ synonym: "set of outer region of renal pyramids" RELATED [] synonym: "zona externa (medullaris renalis)" EXACT [] synonym: "zona externa medullae renalis" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0000362 ! renal medulla +relationship: BFO:0000050 UBERON:0000362 ! part of renal medulla [Term] id: UBERON:0001294 @@ -4453,7 +4453,7 @@ synonym: "set of inner region of renal pyramids" EXACT [] synonym: "zona interna (medullaris renalis)" EXACT [] synonym: "zona interna medullae renalis" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0000362 ! renal medulla +relationship: BFO:0000050 UBERON:0000362 ! part of renal medulla [Term] id: UBERON:0001295 @@ -4466,8 +4466,8 @@ synonym: "uterine mucosa" RELATED [] synonym: "uterine mucous membrane" RELATED [] is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0000459 ! uterine wall +intersection_of: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0000459 ! part of uterine wall [Term] id: UBERON:0001296 @@ -4480,7 +4480,7 @@ synonym: "uterine smooth muscle" RELATED [] is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034933 ! layer of smooth muscle tissue -relationship: BFO:0000050 UBERON:0000459 ! uterine wall +relationship: BFO:0000050 UBERON:0000459 ! part of uterine wall [Term] id: UBERON:0001297 @@ -4498,8 +4498,8 @@ synonym: "visceral peritoneum of uterus" EXACT [] is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0000459 ! uterine wall +intersection_of: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0000459 ! part of uterine wall [Term] id: UBERON:0001301 @@ -4508,8 +4508,8 @@ def: "the elongated structure connected to the posterior surface of the testis t synonym: "Nebenhoden@de" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system -relationship: BFO:0000050 UBERON:0006947 ! male genital duct -relationship: RO:0002202 UBERON:0003074 ! mesonephric duct +relationship: BFO:0000050 UBERON:0006947 ! part of male genital duct +relationship: RO:0002202 UBERON:0003074 ! develops_from mesonephric duct [Term] id: UBERON:0001305 @@ -4524,9 +4524,9 @@ synonym: "ovary follicle" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure -relationship: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000051 UBERON:0000038 ! follicular fluid -relationship: RO:0002202 UBERON:0005296 ! ovary sex cord +relationship: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000051 UBERON:0000038 ! has part follicular fluid +relationship: RO:0002202 UBERON:0005296 ! develops_from ovary sex cord [Term] id: UBERON:0001310 @@ -4545,8 +4545,8 @@ synonym: "vein of vagina" EXACT [] is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0001325 @@ -4559,7 +4559,7 @@ synonym: "pelvis muscle organ" EXACT [] is_a: UBERON:0003833 ! abdominal segment muscle is_a: UBERON:0005179 ! pelvic region element intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002355 ! pelvic region of trunk +intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0001328 @@ -4572,8 +4572,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0001331 @@ -4587,8 +4587,8 @@ is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0000989 ! penis -relationship: BFO:0000050 UBERON:0000989 ! penis +intersection_of: BFO:0000050 UBERON:0000989 ! part of penis +relationship: BFO:0000050 UBERON:0000989 ! part of penis [Term] id: UBERON:0001332 @@ -4604,9 +4604,9 @@ synonym: "preputium" BROAD [] synonym: "preputium penis" EXACT [] is_a: UBERON:0011374 ! prepuce intersection_of: UBERON:0011374 ! prepuce -intersection_of: BFO:0000050 UBERON:0000989 ! penis -relationship: BFO:0000050 UBERON:0000989 ! penis -relationship: RO:0002202 UBERON:0035005 ! preputial swelling of male +intersection_of: BFO:0000050 UBERON:0000989 ! part of penis +relationship: BFO:0000050 UBERON:0000989 ! part of penis +relationship: RO:0002202 UBERON:0035005 ! develops_from preputial swelling of male [Term] id: UBERON:0001333 @@ -4614,8 +4614,8 @@ name: male urethra def: "A urethra that is part of a male reproductive system." [] is_a: UBERON:0000057 ! urethra intersection_of: UBERON:0000057 ! urethra -intersection_of: BFO:0000050 UBERON:0003101 ! male organism -relationship: BFO:0000050 UBERON:0003101 ! male organism +intersection_of: BFO:0000050 UBERON:0003101 ! part of male organism +relationship: BFO:0000050 UBERON:0003101 ! part of male organism [Term] id: UBERON:0001334 @@ -4625,8 +4625,8 @@ synonym: "urethra feminina" RELATED [] synonym: "urethra muliebris" RELATED [] is_a: UBERON:0000057 ! urethra intersection_of: UBERON:0000057 ! urethra -intersection_of: BFO:0000050 UBERON:0003100 ! female organism -relationship: BFO:0000050 UBERON:0003100 ! female organism +intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism +relationship: BFO:0000050 UBERON:0003100 ! part of female organism [Term] id: UBERON:0001338 @@ -4639,8 +4639,8 @@ synonym: "urethral mucuous gland" EXACT [] is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0001343 @@ -4653,8 +4653,8 @@ synonym: "tubuli seminiferi" EXACT [] synonym: "tubuli seminiferi" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system -relationship: BFO:0000050 UBERON:0000473 ! testis -relationship: RO:0002202 UBERON:0005297 ! testis sex cord +relationship: BFO:0000050 UBERON:0000473 ! part of testis +relationship: RO:0002202 UBERON:0005297 ! develops_from testis sex cord [Term] id: UBERON:0001344 @@ -4668,8 +4668,8 @@ synonym: "vaginal epithelium" EXACT [] is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0004804 ! oviduct epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0001347 @@ -4704,7 +4704,7 @@ synonym: "saccus lacrimalis" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ -relationship: BFO:0000050 UBERON:0002392 ! nasolacrimal duct +relationship: BFO:0000050 UBERON:0002392 ! part of nasolacrimal duct [Term] id: UBERON:0001352 @@ -4720,8 +4720,8 @@ synonym: "external auditory tube" EXACT [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001691 ! external ear -relationship: RO:0002202 UBERON:0005872 ! 1st arch pharyngeal cleft +relationship: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: RO:0002202 UBERON:0005872 ! develops_from 1st arch pharyngeal cleft [Term] id: UBERON:0001353 @@ -4739,8 +4739,8 @@ synonym: "parietal serous membrane of peritoneum" EXACT [] synonym: "peritoneal cavity lining" RELATED [] is_a: UBERON:0022351 ! parietal serous membrane intersection_of: UBERON:0022351 ! parietal serous membrane -intersection_of: BFO:0000050 UBERON:0002358 ! peritoneum -relationship: BFO:0000050 UBERON:0002358 ! peritoneum +intersection_of: BFO:0000050 UBERON:0002358 ! part of peritoneum +relationship: BFO:0000050 UBERON:0002358 ! part of peritoneum [Term] id: UBERON:0001383 @@ -4758,8 +4758,8 @@ synonym: "muscle organ of leg" EXACT [] synonym: "skeletal muscle of leg" EXACT [] is_a: UBERON:0003663 ! hindlimb muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0004466 ! musculature of leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0004466 ! part of musculature of leg [Term] id: UBERON:0001384 @@ -4776,7 +4776,7 @@ synonym: "somatic motor areas" RELATED [] synonym: "somatomotor areas" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001870 ! frontal cortex +relationship: BFO:0000050 UBERON:0001870 ! part of frontal cortex [Term] id: UBERON:0001415 @@ -4788,8 +4788,8 @@ synonym: "pelvis zone of skin" EXACT [] synonym: "zone of skin of pelvis" EXACT [] is_a: UBERON:0003836 ! abdominal segment skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk +intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0001416 @@ -4802,8 +4802,8 @@ synonym: "skin of abdomen proper" EXACT [] synonym: "zone of skin of abdomen" EXACT [] is_a: UBERON:0003836 ! abdominal segment skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0001418 @@ -4816,8 +4816,8 @@ synonym: "upper body skin" RELATED [] synonym: "zone of skin of thorax" EXACT [] is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0001419 @@ -4828,8 +4828,8 @@ synonym: "limb zone of skin" EXACT [] synonym: "zone of skin of limb" EXACT [] is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0001421 @@ -4845,11 +4845,11 @@ synonym: "upper limb girdle" NARROW [] is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007823 ! appendage girdle region -intersection_of: BFO:0000050 UBERON:0010708 ! pectoral complex +intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex disjoint_from: UBERON:0007831 ! pectoral girdle skeleton -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000051 UBERON:0007831 ! pectoral girdle skeleton +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000051 UBERON:0007831 ! has part pectoral girdle skeleton [Term] id: UBERON:0001422 @@ -4863,9 +4863,9 @@ synonym: "lymph vessel of face" EXACT [] synonym: "lymphatic vessel of face" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0011363 ! cranial lymph vasculature +intersection_of: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0011363 ! part of cranial lymph vasculature [Term] id: UBERON:0001425 @@ -4873,8 +4873,8 @@ name: pectoral lymphatic vessel synonym: "PL" RELATED [] is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000050 UBERON:0001421 ! pectoral girdle region +intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region +relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region [Term] id: UBERON:0001434 @@ -4885,8 +4885,8 @@ synonym: "skeleton system" EXACT [] synonym: "Skelettsystem" RELATED [] is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision -intersection_of: BFO:0000051 UBERON:0004288 ! skeleton -intersection_of: BFO:0000051 UBERON:0004770 ! articular system +intersection_of: BFO:0000051 UBERON:0004288 ! has part skeleton +intersection_of: BFO:0000051 UBERON:0004770 ! has part articular system disjoint_from: UBERON:0001474 ! bone element disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system @@ -4896,9 +4896,9 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000050 UBERON:0002204 ! musculoskeletal system -relationship: BFO:0000051 UBERON:0004288 ! skeleton -relationship: BFO:0000051 UBERON:0004770 ! articular system +relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system +relationship: BFO:0000051 UBERON:0004288 ! has part skeleton +relationship: BFO:0000051 UBERON:0004770 ! has part articular system [Term] id: UBERON:0001436 @@ -4924,8 +4924,8 @@ is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: RO:0002202 UBERON:0010686 ! manual digit phalanx cartilage element +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: RO:0002202 UBERON:0010686 ! develops_from manual digit phalanx cartilage element [Term] id: UBERON:0001437 @@ -4945,7 +4945,7 @@ synonym: "diaphyseal end of long bone" EXACT [] synonym: "long bone metaphysis" EXACT [] synonym: "metaphyses" EXACT [] is_a: UBERON:0005055 ! zone of long bone -relationship: BFO:0000050 UBERON:0004769 ! diaphysis +relationship: BFO:0000050 UBERON:0004769 ! part of diaphysis [Term] id: UBERON:0001440 @@ -4966,8 +4966,8 @@ synonym: "upper limb skeleton" EXACT [] synonym: "wing skeleton" NARROW [] is_a: UBERON:0004381 ! skeleton of limb is_a: UBERON:0007272 ! pectoral appendage skeleton -relationship: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0012475 ! skeleton of pectoral complex +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0012475 ! part of skeleton of pectoral complex [Term] id: UBERON:0001441 @@ -4985,8 +4985,8 @@ synonym: "skeleton of free lower limb" EXACT [] synonym: "skeleton of lower limb" EXACT [] is_a: UBERON:0004381 ! skeleton of limb is_a: UBERON:0007273 ! pelvic appendage skeleton -relationship: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0012476 ! skeleton of pelvic complex +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0012476 ! part of skeleton of pelvic complex [Term] id: UBERON:0001442 @@ -5007,8 +5007,8 @@ synonym: "set of bones of hand" EXACT [] synonym: "skeleton of hand" EXACT [] is_a: UBERON:0006717 ! autopodial skeleton disjoint_from: UBERON:0001445 ! skeleton of pes -relationship: BFO:0000050 UBERON:0001440 ! forelimb skeleton -relationship: BFO:0000050 UBERON:0002398 ! manus +relationship: BFO:0000050 UBERON:0001440 ! part of forelimb skeleton +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0001443 @@ -5021,7 +5021,7 @@ synonym: "thoracic body wall" RELATED [] synonym: "thorax" RELATED [] synonym: "ventral part of thoracic region" EXACT [] is_a: UBERON:0009569 ! subdivision of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0001444 @@ -5030,7 +5030,7 @@ synonym: "head region" RELATED [] synonym: "head subdivision" EXACT [] synonym: "region of head" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0000033 ! head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0001445 @@ -5046,8 +5046,8 @@ synonym: "posterior autopodium skeleton" EXACT [] synonym: "set of bones of foot" EXACT [] synonym: "skeleton of foot" EXACT [] is_a: UBERON:0006717 ! autopodial skeleton -relationship: BFO:0000050 UBERON:0001441 ! hindlimb skeleton -relationship: BFO:0000050 UBERON:0002387 ! pes +relationship: BFO:0000050 UBERON:0001441 ! part of hindlimb skeleton +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0001449 @@ -5072,8 +5072,8 @@ is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: RO:0002202 UBERON:0010685 ! pedal digit phalanx cartilage element +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: RO:0002202 UBERON:0010685 ! develops_from pedal digit phalanx cartilage element [Term] id: UBERON:0001456 @@ -5082,7 +5082,7 @@ def: "A subdivision of the head that has as parts the layers deep to the surface synonym: "facia/facies" RELATED [] synonym: "visage" RELATED [] is_a: UBERON:0001444 ! subdivision of head -relationship: BFO:0000051 UBERON:0000165 ! mouth +relationship: BFO:0000051 UBERON:0000165 ! has part mouth [Term] id: UBERON:0001457 @@ -5095,8 +5095,8 @@ synonym: "zone of skin of blepharon" EXACT [] synonym: "zone of skin of eyelid" EXACT [] is_a: UBERON:1000021 ! skin of face intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid -relationship: BFO:0000050 UBERON:0001711 ! eyelid +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: BFO:0000050 UBERON:0001711 ! part of eyelid [Term] id: UBERON:0001459 @@ -5115,8 +5115,8 @@ synonym: "zone of skin of outer ear" EXACT [] is_a: UBERON:0001084 ! skin of head is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001691 ! external ear -relationship: BFO:0000050 UBERON:0001757 ! pinna +intersection_of: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: BFO:0000050 UBERON:0001757 ! part of pinna [Term] id: UBERON:0001460 @@ -5135,7 +5135,7 @@ synonym: "coxa" RELATED [] synonym: "hip region" EXACT [] synonym: "regio coxae" EXACT [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0010709 ! pelvic complex +relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex [Term] id: UBERON:0001465 @@ -5143,7 +5143,7 @@ name: knee def: "A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod." [] synonym: "knee region" EXACT [] is_a: UBERON:0008784 ! lower limb segment -relationship: BFO:0000050 UBERON:0000978 ! leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0001466 @@ -5164,9 +5164,9 @@ synonym: "pes digit" EXACT [] synonym: "toe" EXACT [] is_a: UBERON:0002544 ! digit intersection_of: UBERON:0002544 ! digit -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0012142 ! pedal digitopodium region -relationship: BFO:0000050 UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0012142 ! part of pedal digitopodium region +relationship: BFO:0000050 UBERON:5001466 ! part of pedal digit plus metapodial segment [Term] id: UBERON:0001467 @@ -5175,8 +5175,8 @@ def: "A subdivision of the pectoral complex consisting of the structures in the synonym: "articulatio humeri" RELATED [] synonym: "shoulder region" EXACT [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000051 UBERON:0016884 ! shoulder joint +relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000051 UBERON:0016884 ! has part shoulder joint [Term] id: UBERON:0001468 @@ -5188,7 +5188,7 @@ synonym: "intervertebral symphysis" EXACT [] synonym: "joint of vertebral body" EXACT [] synonym: "vertebral joint" BROAD [] is_a: UBERON:0002216 ! symphysis -relationship: BFO:0000050 UBERON:0001130 ! vertebral column +relationship: BFO:0000050 UBERON:0001130 ! part of vertebral column [Term] id: UBERON:0001470 @@ -5202,8 +5202,8 @@ synonym: "shoulder joint" BROAD [] is_a: UBERON:0011108 ! synovial joint of pectoral girdle is_a: UBERON:0011139 ! synovial limb joint is_a: UBERON:0016884 ! shoulder joint -relationship: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0004753 ! scapulocoracoid +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0004753 ! part of scapulocoracoid [Term] id: UBERON:0001471 @@ -5214,8 +5214,8 @@ synonym: "penis foreskin" EXACT [] synonym: "preputial skin" EXACT [] is_a: UBERON:0001331 ! skin of penis intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001332 ! prepuce of penis -relationship: BFO:0000050 UBERON:0001332 ! prepuce of penis +intersection_of: BFO:0000050 UBERON:0001332 ! part of prepuce of penis +relationship: BFO:0000050 UBERON:0001332 ! part of prepuce of penis [Term] id: UBERON:0001473 @@ -5225,10 +5225,10 @@ synonym: "lymph vessel" EXACT [] synonym: "vas lymphaticum" RELATED [] is_a: UBERON:0000055 ! vessel intersection_of: UBERON:0000055 ! vessel -intersection_of: BFO:0000050 UBERON:0004536 ! lymph vasculature +intersection_of: BFO:0000050 UBERON:0004536 ! part of lymph vasculature disjoint_from: UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0004536 ! lymph vasculature -relationship: BFO:0000051 UBERON:0002391 ! lymph +relationship: BFO:0000050 UBERON:0004536 ! part of lymph vasculature +relationship: BFO:0000051 UBERON:0002391 ! has part lymph [Term] id: UBERON:0001474 @@ -5241,7 +5241,7 @@ is_a: UBERON:0004765 ! skeletal element disjoint_from: UBERON:0001630 ! muscle organ disjoint_from: UBERON:0005090 ! muscle structure disjoint_from: UBERON:0010538 ! paired limb/fin segment -relationship: BFO:0000051 UBERON:0002481 ! bone tissue +relationship: BFO:0000051 UBERON:0002481 ! has part bone tissue [Term] id: UBERON:0001482 @@ -5251,7 +5251,7 @@ synonym: "muscle organ of shoulder" EXACT [] synonym: "shoulder muscle" EXACT [] synonym: "shoulder muscle organ" EXACT [] is_a: UBERON:0014892 ! skeletal muscle organ -relationship: BFO:0000050 UBERON:0004476 ! musculature of shoulder +relationship: BFO:0000050 UBERON:0004476 ! part of musculature of shoulder [Term] id: UBERON:0001483 @@ -5262,8 +5262,8 @@ synonym: "shoulder zone of skin" EXACT [] synonym: "zone of skin of shoulder" EXACT [] is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0001467 ! shoulder +intersection_of: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder [Term] id: UBERON:0001485 @@ -5273,8 +5273,8 @@ synonym: "articulatio genus" RELATED [] synonym: "joint of knee" EXACT [] is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 ! synovial limb joint -relationship: BFO:0000050 UBERON:0001465 ! knee -relationship: RO:0002202 UBERON:0006256 ! knee joint primordium +relationship: BFO:0000050 UBERON:0001465 ! part of knee +relationship: RO:0002202 UBERON:0006256 ! develops_from knee joint primordium [Term] id: UBERON:0001487 @@ -5291,8 +5291,8 @@ is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0003841 ! autopod joint is_a: UBERON:0011139 ! synovial limb joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0001489 @@ -5308,8 +5308,8 @@ is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0003841 ! autopod joint is_a: UBERON:0011139 ! synovial limb joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0001495 @@ -5325,8 +5325,8 @@ synonym: "pectoralis muscle" RELATED [] is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008196 ! muscle of pectoral girdle -relationship: BFO:0000050 UBERON:0004464 ! musculature of thorax -relationship: RO:0002202 UBERON:0010984 ! pectoral pre-muscle mass +relationship: BFO:0000050 UBERON:0004464 ! part of musculature of thorax +relationship: RO:0002202 UBERON:0010984 ! develops_from pectoral pre-muscle mass [Term] id: UBERON:0001497 @@ -5342,8 +5342,8 @@ synonym: "pelvic girdle skeletal muscle" EXACT [] is_a: UBERON:0001325 ! muscle of pelvis is_a: UBERON:0010890 ! pelvic complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001271 ! pelvic girdle region -relationship: BFO:0000050 UBERON:0004470 ! musculature of pelvic girdle +intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region +relationship: BFO:0000050 UBERON:0004470 ! part of musculature of pelvic girdle [Term] id: UBERON:0001498 @@ -5355,8 +5355,8 @@ synonym: "muscle of foot" EXACT [] synonym: "muscle organ of foot" EXACT [] is_a: UBERON:0003663 ! hindlimb muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0004488 ! musculature of pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0004488 ! part of musculature of pes [Term] id: UBERON:0001499 @@ -5370,8 +5370,8 @@ synonym: "muscle of upper arm or lower arm" EXACT [] synonym: "upper arm / lower arm muscle" EXACT [] is_a: UBERON:0003662 ! forelimb muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0004474 ! musculature of arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0004474 ! part of musculature of arm [Term] id: UBERON:0001500 @@ -5384,8 +5384,8 @@ synonym: "muscle of hand" EXACT [] synonym: "muscle organ of manus" EXACT [] is_a: UBERON:0003662 ! forelimb muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0004489 ! musculature of manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0004489 ! part of musculature of manus [Term] id: UBERON:0001510 @@ -5396,8 +5396,8 @@ synonym: "knee zone of skin" EXACT [] synonym: "zone of skin of knee" EXACT [] is_a: UBERON:0001511 ! skin of leg intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001465 ! knee -relationship: BFO:0000050 UBERON:0001465 ! knee +intersection_of: BFO:0000050 UBERON:0001465 ! part of knee +relationship: BFO:0000050 UBERON:0001465 ! part of knee [Term] id: UBERON:0001511 @@ -5408,8 +5408,8 @@ synonym: "leg zone of skin" EXACT [] synonym: "zone of skin of leg" EXACT [] is_a: UBERON:0003532 ! hindlimb skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0000978 ! leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0001513 @@ -5421,8 +5421,8 @@ synonym: "skin of hind-paw" NARROW [] is_a: UBERON:0003532 ! hindlimb skin is_a: UBERON:0015790 ! autopod skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0001515 @@ -5434,8 +5434,8 @@ synonym: "pars thoracica aortae" RELATED [] synonym: "thoracic part of aorta" EXACT [] is_a: UBERON:0005800 ! section of aorta intersection_of: UBERON:0005800 ! section of aorta -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0001519 @@ -5448,8 +5448,8 @@ synonym: "skin of hand" EXACT [] is_a: UBERON:0003531 ! forelimb skin is_a: UBERON:0015790 ! autopod skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0001529 @@ -5461,7 +5461,7 @@ synonym: "innominate artery" EXACT [] synonym: "truncus brachiocephalicus" EXACT [] synonym: "truncus brachiocephalicus" RELATED [] is_a: UBERON:0004573 ! systemic artery -relationship: BFO:0000050 UBERON:0007204 ! brachiocephalic vasculature +relationship: BFO:0000050 UBERON:0007204 ! part of brachiocephalic vasculature [Term] id: UBERON:0001533 @@ -5474,8 +5474,8 @@ synonym: "PA" RELATED [] synonym: "pectoral artery" EXACT [] synonym: "subclavian arterial tree" EXACT [] is_a: UBERON:0004573 ! systemic artery -relationship: RO:0002202 UBERON:0002457 ! intersomitic artery -relationship: RO:0002202 UBERON:0005622 ! right dorsal aorta +relationship: RO:0002202 UBERON:0002457 ! develops_from intersomitic artery +relationship: RO:0002202 UBERON:0005622 ! develops_from right dorsal aorta [Term] id: UBERON:0001552 @@ -5485,8 +5485,8 @@ synonym: "arcuate artery" BROAD [] synonym: "renal arcuate artery" EXACT [] is_a: UBERON:0001637 ! artery is_a: UBERON:0003644 ! kidney arterial blood vessel -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0009885 ! interlobar artery +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0009885 ! part of interlobar artery [Term] id: UBERON:0001554 @@ -5501,8 +5501,8 @@ synonym: "zone of skin of hip region" EXACT [] synonym: "zone of skin of regio coxae" EXACT [] is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001464 ! hip -relationship: BFO:0000050 UBERON:0001464 ! hip +intersection_of: BFO:0000050 UBERON:0001464 ! part of hip +relationship: BFO:0000050 UBERON:0001464 ! part of hip [Term] id: UBERON:0001555 @@ -5516,17 +5516,17 @@ synonym: "enteric tract" EXACT [] synonym: "gut" BROAD [] synonym: "gut tube" RELATED [] is_a: UBERON:0000025 ! tube -relationship: BFO:0000050 UBERON:0001007 ! digestive system -relationship: RO:0002202 UBERON:0007026 ! presumptive gut +relationship: BFO:0000050 UBERON:0001007 ! part of digestive system +relationship: RO:0002495 UBERON:0007026 ! immediate transformation of presumptive gut [Term] id: UBERON:0001556 name: lower urinary tract def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000051 UBERON:0000057 ! urethra -relationship: BFO:0000051 UBERON:0001255 ! urinary bladder +relationship: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000051 UBERON:0000057 ! has part urethra +relationship: BFO:0000051 UBERON:0001255 ! has part urinary bladder [Term] id: UBERON:0001557 @@ -5534,14 +5534,14 @@ name: upper respiratory tract def: "The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea." [] is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000051 UBERON:0000004 ! nose +relationship: BFO:0000051 UBERON:0000004 ! has part nose [Term] id: UBERON:0001558 name: lower respiratory tract def: "The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified]" [] is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract -relationship: BFO:0000051 UBERON:0000170 ! pair of lungs +relationship: BFO:0000051 UBERON:0000170 ! has part pair of lungs [Term] id: UBERON:0001560 @@ -5556,7 +5556,7 @@ def: "A muscle organ that attaches the tongue to some other structure." [] synonym: "extrinsic lingual muscle" EXACT [] synonym: "extrinsic tongue muscle" EXACT [] is_a: UBERON:0000378 ! tongue muscle -relationship: RO:0002202 UBERON:0011332 ! extrinsic tongue pre-muscle mass +relationship: RO:0002495 UBERON:0011332 ! immediate transformation of extrinsic tongue pre-muscle mass [Term] id: UBERON:0001576 @@ -5566,8 +5566,8 @@ synonym: "intrinsic lingual muscle" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] is_a: UBERON:0000378 ! tongue muscle is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001723 ! tongue -relationship: RO:0002202 UBERON:0010059 ! hypoglossal cord +relationship: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: RO:0002202 UBERON:0010059 ! develops_from hypoglossal cord [Term] id: UBERON:0001577 @@ -5590,7 +5590,7 @@ synonym: "muscles of facial expression" RELATED [] synonym: "musculi faciei" RELATED [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015789 ! cranial or facial muscle -relationship: RO:0002202 UBERON:0003066 ! pharyngeal arch 2 +relationship: RO:0002202 UBERON:0003066 ! develops_from pharyngeal arch 2 [Term] id: UBERON:0001605 @@ -5603,7 +5603,7 @@ synonym: "musculus ciliarus" EXACT [] is_a: UBERON:0003386 ! smooth muscle of eye is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011222 ! intra-ocular muscle -relationship: BFO:0000050 UBERON:0001775 ! ciliary body +relationship: BFO:0000050 UBERON:0001775 ! part of ciliary body [Term] id: UBERON:0001606 @@ -5614,8 +5614,8 @@ synonym: "iris muscle organ" EXACT [] synonym: "muscle organ of iris" EXACT [] is_a: UBERON:0011222 ! intra-ocular muscle intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: BFO:0000050 UBERON:0001769 ! iris +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: BFO:0000050 UBERON:0001769 ! part of iris [Term] id: UBERON:0001607 @@ -5641,8 +5641,8 @@ is_a: UBERON:0001606 ! muscle of iris is_a: UBERON:0004234 ! iris smooth muscle is_a: UBERON:0007521 ! smooth muscle sphincter intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: RO:0002202 UBERON:0002346 ! neurectoderm +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: RO:0002202 UBERON:0002346 ! develops_from neurectoderm [Term] id: UBERON:0001608 @@ -5667,7 +5667,7 @@ synonym: "radial muscle" RELATED [] synonym: "radial muscle of iris" EXACT [] synonym: "radiating fibers" RELATED [] is_a: UBERON:0004234 ! iris smooth muscle -relationship: RO:0002202 UBERON:0002346 ! neurectoderm +relationship: RO:0002202 UBERON:0002346 ! develops_from neurectoderm [Term] id: UBERON:0001621 @@ -5685,8 +5685,8 @@ def: "Organ consisting of a tissue made up of various elongated cells that are s synonym: "muscle" BROAD [] is_a: UBERON:0000062 ! organ is_a: UBERON:0005090 ! muscle structure -relationship: BFO:0000050 UBERON:0001015 ! musculature -relationship: BFO:0000051 UBERON:0002385 ! muscle tissue +relationship: BFO:0000050 UBERON:0001015 ! part of musculature +relationship: BFO:0000051 UBERON:0002385 ! has part muscle tissue [Term] id: UBERON:0001637 @@ -5719,7 +5719,7 @@ synonym: "os temporale" RELATED [] is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008193 ! pneumatized bone is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0011156 ! facial skeleton +relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton [Term] id: UBERON:0001690 @@ -5729,8 +5729,8 @@ synonym: "auditory apparatus" RELATED [] synonym: "auris" RELATED [] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0002105 ! vestibulo-auditory system +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0002105 ! part of vestibulo-auditory system [Term] id: UBERON:0001691 @@ -5742,8 +5742,8 @@ synonym: "auris externa" RELATED [] synonym: "outer ear" EXACT [] is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0001690 ! ear +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0001690 ! part of ear [Term] id: UBERON:0001694 @@ -5758,8 +5758,8 @@ synonym: "petrous bone" RELATED [] synonym: "temporal bone petrous part" EXACT [] is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0001678 ! temporal bone -relationship: BFO:0000050 UBERON:0002517 ! basicranium +relationship: BFO:0000050 UBERON:0001678 ! part of temporal bone +relationship: BFO:0000050 UBERON:0002517 ! part of basicranium [Term] id: UBERON:0001703 @@ -5770,8 +5770,8 @@ synonym: "brain case" RELATED [] synonym: "brain pan" RELATED [] synonym: "braincase" RELATED [] is_a: UBERON:0011158 ! primary subdivision of skull -relationship: BFO:0000050 UBERON:0003128 ! cranium -relationship: RO:0002202 UBERON:0004761 ! cartilaginous neurocranium +relationship: BFO:0000050 UBERON:0003128 ! part of cranium +relationship: RO:0002202 UBERON:0004761 ! develops_from cartilaginous neurocranium [Term] id: UBERON:0001708 @@ -5788,8 +5788,8 @@ synonym: "pharyngeal arch 1 skeleton" RELATED [] synonym: "visceral arch 1" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0011156 ! facial skeleton -relationship: BFO:0000050 UBERON:0011595 ! jaw region +relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton +relationship: BFO:0000050 UBERON:0011595 ! part of jaw region [Term] id: UBERON:0001710 @@ -5800,9 +5800,9 @@ synonym: "mandibular part of mouth" EXACT [] synonym: "mandibular series" RELATED [] is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0011595 ! jaw region -relationship: BFO:0000051 UBERON:0003278 ! skeleton of lower jaw -relationship: RO:0002202 UBERON:0005867 ! mandibular prominence +relationship: BFO:0000050 UBERON:0011595 ! part of jaw region +relationship: BFO:0000051 UBERON:0003278 ! has part skeleton of lower jaw +relationship: RO:0002202 UBERON:0005867 ! develops_from mandibular prominence [Term] id: UBERON:0001711 @@ -5815,7 +5815,7 @@ synonym: "palpebra" EXACT [] synonym: "palpebrae" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0001714 @@ -5833,7 +5833,7 @@ synonym: "ganglion of cranial neural tree organ" EXACT [] synonym: "head ganglion" RELATED [] synonym: "presumptive cranial ganglia" RELATED [] is_a: UBERON:0000045 ! ganglion -relationship: BFO:0000050 UBERON:0000033 ! head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0001723 @@ -5843,10 +5843,10 @@ synonym: "glossus" RELATED [] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0000165 ! mouth -relationship: BFO:0000050 UBERON:0001033 ! gustatory system -relationship: RO:0002202 UBERON:0008814 ! pharyngeal arch system -relationship: RO:0002202 UBERON:0010056 ! future tongue +relationship: BFO:0000050 UBERON:0000165 ! part of mouth +relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system +relationship: RO:0002202 UBERON:0008814 ! develops_from pharyngeal arch system +relationship: RO:0002495 UBERON:0010056 ! immediate transformation of future tongue [Term] id: UBERON:0001728 @@ -5858,8 +5858,8 @@ synonym: "Nasenrachenraum" RELATED [] synonym: "pars nasalis pharyngis" RELATED [] synonym: "rhinopharynx" EXACT [] is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001557 ! upper respiratory tract +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001557 ! part of upper respiratory tract [Term] id: UBERON:0001735 @@ -5873,7 +5873,7 @@ synonym: "Waldeyer's ring" EXACT [] synonym: "Waldeyer's tonsillar ring" EXACT [] is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue is_a: UBERON:0001962 ! gut-associated lymphoid tissue -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0001744 @@ -5882,7 +5882,7 @@ def: "Portion of connective tissue with various types of white blood cells enmes synonym: "lymphatic tissue" EXACT [] synonym: "lymphocytic tissue" EXACT [] is_a: UBERON:0034769 ! lymphomyeloid tissue -relationship: BFO:0000050 UBERON:0002465 ! lymphoid system +relationship: BFO:0000050 UBERON:0002465 ! part of lymphoid system [Term] id: UBERON:0001745 @@ -5893,9 +5893,9 @@ synonym: "secondary lymphoid nodule" EXACT [] synonym: "secondary lymphoid tissue" EXACT [] is_a: UBERON:0000444 ! lymphoid follicle intersection_of: UBERON:0000444 ! lymphoid follicle -intersection_of: BFO:0000051 UBERON:0010754 ! germinal center -relationship: BFO:0000051 UBERON:0010754 ! germinal center -relationship: RO:0002202 UBERON:0010422 ! primary nodular lymphoid tissue +intersection_of: BFO:0000051 UBERON:0010754 ! has part germinal center +relationship: BFO:0000051 UBERON:0010754 ! has part germinal center +relationship: RO:0002202 UBERON:0010422 ! develops_from primary nodular lymphoid tissue [Term] id: UBERON:0001746 @@ -5907,8 +5907,8 @@ synonym: "thyroid gland capsule" EXACT [] is_a: UBERON:0003893 ! capsule is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003893 ! capsule -intersection_of: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: BFO:0000050 UBERON:0002046 ! thyroid gland +intersection_of: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: BFO:0000050 UBERON:0002046 ! part of thyroid gland [Term] id: UBERON:0001747 @@ -5926,8 +5926,8 @@ is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: BFO:0000050 UBERON:0002046 ! thyroid gland +intersection_of: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: BFO:0000050 UBERON:0002046 ! part of thyroid gland [Term] id: UBERON:0001749 @@ -5938,8 +5938,8 @@ synonym: "parathyroid parenchyma" EXACT [] synonym: "parenchyma of parathyroid" EXACT [] is_a: UBERON:0000353 ! parenchyma intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0001132 ! parathyroid gland -relationship: BFO:0000050 UBERON:0001132 ! parathyroid gland +intersection_of: BFO:0000050 UBERON:0001132 ! part of parathyroid gland +relationship: BFO:0000050 UBERON:0001132 ! part of parathyroid gland [Term] id: UBERON:0001750 @@ -5952,10 +5952,10 @@ synonym: "nasolacrimal drainage system" RELATED [] synonym: "nasolacrimal system" RELATED [] is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0010409 ! ocular surface region -relationship: BFO:0000050 UBERON:0035639 ! ocular adnexa -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0010409 ! part of ocular surface region +relationship: BFO:0000050 UBERON:0035639 ! part of ocular adnexa +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0001751 @@ -5966,7 +5966,7 @@ synonym: "dentine of tooth" EXACT [] synonym: "predentin" NARROW [] is_a: UBERON:0010365 ! odontoid tissue is_a: UBERON:4000013 ! mineralized skeletal tissue -relationship: RO:0002202 UBERON:0011587 ! pre-dentine +relationship: RO:0002202 UBERON:0011587 ! develops_from pre-dentine [Term] id: UBERON:0001752 @@ -5978,7 +5978,7 @@ synonym: "enameloid" RELATED [] synonym: "tooth enamel" EXACT [] is_a: UBERON:0010365 ! odontoid tissue is_a: UBERON:4000013 ! mineralized skeletal tissue -relationship: RO:0002202 UBERON:0011588 ! pre-enamel +relationship: RO:0002202 UBERON:0011588 ! develops_from pre-enamel [Term] id: UBERON:0001753 @@ -6000,8 +6000,8 @@ synonym: "pulp of tooth" EXACT [] synonym: "tooth pulp" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011825 ! loose connective tissue -relationship: BFO:0000050 UBERON:0001091 ! calcareous tooth -relationship: RO:0002202 UBERON:0001763 ! odontogenic papilla +relationship: BFO:0000050 UBERON:0001091 ! part of calcareous tooth +relationship: RO:0002202 UBERON:0001763 ! develops_from odontogenic papilla [Term] id: UBERON:0001756 @@ -6009,7 +6009,7 @@ name: middle ear def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [] synonym: "auris media" RELATED [] is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0001690 ! ear +relationship: BFO:0000050 UBERON:0001690 ! part of ear [Term] id: UBERON:0001757 @@ -6024,8 +6024,8 @@ synonym: "pinna of ear" EXACT [] synonym: "pinnae" RELATED [] is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001691 ! external ear -relationship: RO:0002202 UBERON:0006208 ! auditory hillocks +relationship: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: RO:0002202 UBERON:0006208 ! develops_from auditory hillocks [Term] id: UBERON:0001758 @@ -6036,7 +6036,7 @@ synonym: "periodontal ligament" RELATED [] synonym: "periodontal membrane" RELATED [] synonym: "tooth supporting structure" RELATED [] is_a: UBERON:0000479 ! tissue -relationship: BFO:0000050 UBERON:0003672 ! dentition +relationship: BFO:0000050 UBERON:0003672 ! part of dentition [Term] id: UBERON:0001763 @@ -6051,8 +6051,8 @@ synonym: "pharyngeal tooth mesenchyme" NARROW [] synonym: "tooth mesenchyme" RELATED [] is_a: UBERON:0005856 ! developing mesenchymal condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest -relationship: BFO:0000050 UBERON:0008281 ! tooth bud -relationship: RO:0002202 UBERON:0003856 ! uncondensed odontogenic mesenchyme +relationship: BFO:0000050 UBERON:0008281 ! part of tooth bud +relationship: RO:0002202 UBERON:0003856 ! develops_from uncondensed odontogenic mesenchyme [Term] id: UBERON:0001765 @@ -6070,7 +6070,7 @@ is_a: UBERON:0000058 ! duct is_a: UBERON:0003244 ! epithelium of mammary gland is_a: UBERON:0003914 ! epithelial tube intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland [Term] id: UBERON:0001766 @@ -6084,7 +6084,7 @@ synonym: "camera anterior bulbi oculi" RELATED [] synonym: "camera oculi anterior" RELATED [] synonym: "eye anterior chamber" EXACT [] is_a: UBERON:0006311 ! chamber of eyeball -relationship: BFO:0000050 UBERON:0001801 ! anterior segment of eyeball +relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball [Term] id: UBERON:0001768 @@ -6100,10 +6100,10 @@ synonym: "vascular layer of eyeball" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001801 ! anterior segment of eyeball -relationship: BFO:0000051 UBERON:0001769 ! iris -relationship: BFO:0000051 UBERON:0001775 ! ciliary body -relationship: BFO:0000051 UBERON:0001776 ! optic choroid +relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball +relationship: BFO:0000051 UBERON:0001769 ! has part iris +relationship: BFO:0000051 UBERON:0001775 ! has part ciliary body +relationship: BFO:0000051 UBERON:0001776 ! has part optic choroid [Term] id: UBERON:0001769 @@ -6114,8 +6114,8 @@ synonym: "irides" RELATED [] synonym: "irises" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0011892 ! anterior uvea -relationship: RO:0002202 UBERON:0004128 ! optic vesicle +relationship: BFO:0000050 UBERON:0011892 ! part of anterior uvea +relationship: RO:0002202 UBERON:0004128 ! develops_from optic vesicle [Term] id: UBERON:0001770 @@ -6124,7 +6124,7 @@ def: "The part of the lacrimal duct that connects the lacrimal punctum to the la synonym: "canaliculus lacrimalis" RELATED [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001850 ! lacrimal drainage system +relationship: BFO:0000050 UBERON:0001850 ! part of lacrimal drainage system [Term] id: UBERON:0001772 @@ -6147,8 +6147,8 @@ synonym: "epithelium posterius corneae" RELATED [] synonym: "external epithelium of cornea" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015808 ! eye epithelium -relationship: BFO:0000050 UBERON:0000964 ! cornea -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000964 ! part of cornea +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0001773 @@ -6157,9 +6157,9 @@ def: "Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]." [] synonym: "scleral capsule" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0012430 ! tunica fibrosa of eyeball -relationship: RO:0002202 UBERON:0003314 ! eye mesenchyme -relationship: RO:0002202 UBERON:0007213 ! mesenchyme derived from head neural crest +relationship: BFO:0000050 UBERON:0012430 ! part of tunica fibrosa of eyeball +relationship: RO:0002202 UBERON:0003314 ! develops_from eye mesenchyme +relationship: RO:0002202 UBERON:0007213 ! develops_from mesenchyme derived from head neural crest [Term] id: UBERON:0001774 @@ -6176,8 +6176,8 @@ synonym: "trunk musculature" EXACT [] is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0004479 ! musculature of trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0004479 ! part of musculature of trunk [Term] id: UBERON:0001775 @@ -6189,10 +6189,10 @@ synonym: "corpus ciliare" RELATED [] synonym: "ocular ciliary body" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0011892 ! anterior uvea -relationship: BFO:0000051 UBERON:0001605 ! ciliary muscle -relationship: BFO:0000051 UBERON:0010427 ! ciliary processes -relationship: RO:0002202 UBERON:0002346 ! neurectoderm +relationship: BFO:0000050 UBERON:0011892 ! part of anterior uvea +relationship: BFO:0000051 UBERON:0001605 ! has part ciliary muscle +relationship: BFO:0000051 UBERON:0010427 ! has part ciliary processes +relationship: RO:0002202 UBERON:0002346 ! develops_from neurectoderm [Term] id: UBERON:0001776 @@ -6208,8 +6208,8 @@ synonym: "optic choroid" RELATED [] synonym: "posterior uvea" EXACT [] is_a: UBERON:0002203 ! vasculature of eye disjoint_from: UBERON:0011892 ! anterior uvea -relationship: BFO:0000050 UBERON:0001768 ! uvea -relationship: BFO:0000050 UBERON:0019207 ! chorioretinal region +relationship: BFO:0000050 UBERON:0001768 ! part of uvea +relationship: BFO:0000050 UBERON:0019207 ! part of chorioretinal region [Term] id: UBERON:0001777 @@ -6222,9 +6222,9 @@ synonym: "substantia propria corneae" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0000964 ! cornea -relationship: BFO:0000050 UBERON:0000964 ! cornea -relationship: RO:0002202 UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea +relationship: BFO:0000050 UBERON:0000964 ! part of cornea +relationship: RO:0002202 UBERON:0007213 ! develops_from mesenchyme derived from head neural crest [Term] id: UBERON:0001778 @@ -6236,8 +6236,8 @@ synonym: "ocular ciliary epithelium" EXACT [] is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001775 ! ciliary body -relationship: BFO:0000050 UBERON:0001775 ! ciliary body +intersection_of: BFO:0000050 UBERON:0001775 ! part of ciliary body +relationship: BFO:0000050 UBERON:0001775 ! part of ciliary body [Term] id: UBERON:0001779 @@ -6248,8 +6248,8 @@ synonym: "stroma of iris" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: BFO:0000050 UBERON:0001769 ! iris +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: BFO:0000050 UBERON:0001769 ! part of iris [Term] id: UBERON:0001780 @@ -6277,7 +6277,7 @@ synonym: "retina neuronal layer" EXACT [] synonym: "retinal layer" EXACT [] synonym: "retinal neuronal layer" EXACT [] is_a: UBERON:0022303 ! nervous system cell part layer -relationship: BFO:0000050 UBERON:0000966 ! retina +relationship: BFO:0000050 UBERON:0000966 ! part of retina [Term] id: UBERON:0001782 @@ -6302,7 +6302,9 @@ synonym: "stratum pigmentosum retinae" EXACT [] is_a: UBERON:0000957 ! lamina is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0015808 ! eye epithelium -relationship: RO:0002202 UBERON:0005424 ! presumptive retinal pigmented epithelium +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: RO:0002495 UBERON:0005424 ! immediate transformation of presumptive retinal pigmented epithelium +relationship: RO:0002495 UBERON:0005424 ! immediate transformation of presumptive retinal pigmented epithelium [Term] id: UBERON:0001785 @@ -6329,7 +6331,7 @@ synonym: "retinal inner nuclear layer" EXACT [] synonym: "stratum nucleare internum" EXACT [] synonym: "stratum nucleare internum retinae" EXACT [] is_a: UBERON:0001781 ! layer of retina -relationship: BFO:0000050 UBERON:0003902 ! retinal neural layer +relationship: BFO:0000050 UBERON:0003902 ! part of retinal neural layer [Term] id: UBERON:0001800 @@ -6352,7 +6354,7 @@ synonym: "segmentum anterius bulbi oculi" RELATED [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0001802 ! posterior segment of eyeball -relationship: BFO:0000050 UBERON:0010230 ! eyeball of camera-type eye +relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye [Term] id: UBERON:0001802 @@ -6367,7 +6369,7 @@ synonym: "segmentum posterius (bulbus oculi)" EXACT [] synonym: "segmentum posterius bulbi oculi" RELATED [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0010230 ! eyeball of camera-type eye +relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye [Term] id: UBERON:0001803 @@ -6384,8 +6386,8 @@ synonym: "lens epithelium" EXACT [] is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000965 ! lens of camera-type eye -relationship: BFO:0000050 UBERON:0000965 ! lens of camera-type eye +intersection_of: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye +relationship: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye [Term] id: UBERON:0001805 @@ -6398,8 +6400,8 @@ synonym: "ganglion of visceral nervous system" EXACT [] synonym: "visceral nervous system ganglion" EXACT [] is_a: UBERON:0003338 ! ganglion of peripheral nervous system intersection_of: UBERON:0000045 ! ganglion -intersection_of: BFO:0000050 UBERON:0002410 ! autonomic nervous system -relationship: BFO:0000050 UBERON:0002410 ! autonomic nervous system +intersection_of: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system +relationship: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system [Term] id: UBERON:0001811 @@ -6411,9 +6413,9 @@ synonym: "tunica conjunctiva" EXACT [] synonym: "wall of conjunctival sac" EXACT [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0005908 ! conjunctival sac -relationship: BFO:0000050 UBERON:0010409 ! ocular surface region -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0005908 ! part of conjunctival sac +relationship: BFO:0000050 UBERON:0010409 ! part of ocular surface region +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0001817 @@ -6430,9 +6432,9 @@ is_a: UBERON:0004859 ! eye gland is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015154 ! lateral gland of orbital region intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001750 ! lacrimal apparatus -relationship: BFO:0000050 UBERON:0001750 ! lacrimal apparatus -relationship: RO:0002202 UBERON:0022284 ! lacrimal gland bud +intersection_of: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus +relationship: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus +relationship: RO:0002202 UBERON:0022284 ! develops_from lacrimal gland bud [Term] id: UBERON:0001820 @@ -6444,8 +6446,8 @@ synonym: "sudoriparous gland" RELATED [] is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0019319 ! exocrine gland of integumental system -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis -relationship: RO:0002202 UBERON:0005089 ! sweat gland placode +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis +relationship: RO:0002202 UBERON:0005089 ! develops_from sweat gland placode [Term] id: UBERON:0001821 @@ -6457,9 +6459,9 @@ synonym: "sebaceous follicle" RELATED [] is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0012344 ! holocrine gland is_a: UBERON:0019319 ! exocrine gland of integumental system -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis -relationship: BFO:0000050 UBERON:0011932 ! pilosebaceous unit -relationship: RO:0002202 UBERON:0005088 ! sebaceous gland placode +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis +relationship: BFO:0000050 UBERON:0011932 ! part of pilosebaceous unit +relationship: RO:0002202 UBERON:0005088 ! develops_from sebaceous gland placode [Term] id: UBERON:0001823 @@ -6471,8 +6473,8 @@ is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0000004 ! nose +intersection_of: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0000004 ! part of nose [Term] id: UBERON:0001826 @@ -6487,8 +6489,8 @@ is_a: UBERON:0000379 ! tracheal mucosa is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0015788 ! olfactory apparatus chamber -relationship: BFO:0000050 UBERON:0015788 ! olfactory apparatus chamber +intersection_of: BFO:0000050 UBERON:0015788 ! part of olfactory apparatus chamber +relationship: BFO:0000050 UBERON:0015788 ! part of olfactory apparatus chamber [Term] id: UBERON:0001828 @@ -6499,8 +6501,8 @@ synonym: "gum" EXACT [] synonym: "gum tissue" EXACT [] synonym: "gums" EXACT [] is_a: UBERON:0003729 ! mouth mucosa -relationship: BFO:0000050 UBERON:0003729 ! mouth mucosa -relationship: BFO:0000050 UBERON:0011595 ! jaw region +relationship: BFO:0000050 UBERON:0003729 ! part of mouth mucosa +relationship: BFO:0000050 UBERON:0011595 ! part of jaw region [Term] id: UBERON:0001837 @@ -6511,8 +6513,8 @@ synonym: "salivary gland duct" EXACT [] synonym: "secretory duct" RELATED [] is_a: UBERON:0003928 ! digestive system duct intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0001044 ! saliva-secreting gland -relationship: BFO:0000050 UBERON:0001044 ! saliva-secreting gland +intersection_of: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland +relationship: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland [Term] id: UBERON:0001839 @@ -6523,9 +6525,9 @@ synonym: "osseous labyrinth" EXACT [] synonym: "osseus labyrinth" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0001694 ! petrous part of temporal bone -relationship: BFO:0000050 UBERON:0001846 ! internal ear -relationship: BFO:0000050 UBERON:0004681 ! vestibular system +relationship: BFO:0000050 UBERON:0001694 ! part of petrous part of temporal bone +relationship: BFO:0000050 UBERON:0001846 ! part of internal ear +relationship: BFO:0000050 UBERON:0004681 ! part of vestibular system [Term] id: UBERON:0001840 @@ -6539,8 +6541,8 @@ synonym: "semicircular ducts" RELATED [] is_a: UBERON:0000025 ! tube is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001846 ! internal ear -relationship: BFO:0000050 UBERON:0001849 ! membranous labyrinth +relationship: BFO:0000050 UBERON:0001846 ! part of internal ear +relationship: BFO:0000050 UBERON:0001849 ! part of membranous labyrinth [Term] id: UBERON:0001844 @@ -6554,7 +6556,7 @@ synonym: "lagena" EXACT [] synonym: "lagenas" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0001839 ! bony labyrinth +relationship: BFO:0000050 UBERON:0001839 ! part of bony labyrinth [Term] id: UBERON:0001846 @@ -6567,8 +6569,8 @@ synonym: "otocyst" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0001690 ! ear -relationship: RO:0002202 UBERON:0003051 ! ear vesicle +relationship: BFO:0000050 UBERON:0001690 ! part of ear +relationship: RO:0002202 UBERON:0003051 ! develops_from ear vesicle [Term] id: UBERON:0001848 @@ -6579,10 +6581,10 @@ synonym: "pinna cartilage" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ -intersection_of: BFO:0000050 UBERON:0001757 ! pinna -intersection_of: BFO:0000050 UBERON:0001867 ! cartilage of external ear -relationship: BFO:0000050 UBERON:0001757 ! pinna -relationship: BFO:0000050 UBERON:0001867 ! cartilage of external ear +intersection_of: BFO:0000050 UBERON:0001757 ! part of pinna +intersection_of: BFO:0000050 UBERON:0001867 ! part of cartilage of external ear +relationship: BFO:0000050 UBERON:0001757 ! part of pinna +relationship: BFO:0000050 UBERON:0001867 ! part of cartilage of external ear [Term] id: UBERON:0001849 @@ -6592,7 +6594,7 @@ synonym: "labyrinthus membranaceus" EXACT [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001846 ! internal ear +relationship: BFO:0000050 UBERON:0001846 ! part of internal ear [Term] id: UBERON:0001850 @@ -6601,7 +6603,7 @@ def: "A collection of channels that connects the conjunctival sac with the nasal synonym: "tear duct" RELATED [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001750 ! lacrimal apparatus +relationship: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus [Term] id: UBERON:0001851 @@ -6610,7 +6612,7 @@ def: "Outermost layer of an organ[WP]." [] synonym: "cortex" EXACT [] synonym: "cortex of organ" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0000062 ! organ +relationship: BFO:0000050 UBERON:0000062 ! part of organ [Term] id: UBERON:0001853 @@ -6650,7 +6652,7 @@ synonym: "scala of Loewenberg" RELATED [] is_a: UBERON:0000025 ! tube is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002499 ! cochlear labyrinth +relationship: BFO:0000050 UBERON:0002499 ! part of cochlear labyrinth [Term] id: UBERON:0001856 @@ -6661,8 +6663,8 @@ synonym: "membranous semicircular canal" RELATED [] is_a: UBERON:0000025 ! tube is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001840 ! semicircular canal -relationship: BFO:0000050 UBERON:0001862 ! vestibular labyrinth +relationship: BFO:0000050 UBERON:0001840 ! part of semicircular canal +relationship: BFO:0000050 UBERON:0001862 ! part of vestibular labyrinth [Term] id: UBERON:0001862 @@ -6675,7 +6677,7 @@ synonym: "vestibular component" BROAD [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001849 ! membranous labyrinth +relationship: BFO:0000050 UBERON:0001849 ! part of membranous labyrinth [Term] id: UBERON:0001867 @@ -6684,9 +6686,9 @@ def: "A cartilage that is part of a external ear [Automatically generated defini synonym: "external ear cartilage" EXACT [] is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0001691 ! external ear -relationship: BFO:0000050 UBERON:0001691 ! external ear -relationship: BFO:0000051 UBERON:0001996 ! elastic cartilage tissue +intersection_of: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: BFO:0000051 UBERON:0001996 ! has part elastic cartilage tissue [Term] id: UBERON:0001868 @@ -6706,8 +6708,8 @@ synonym: "zone of skin of front of thorax" EXACT [] synonym: "zone of skin of pectoral part of chest" RELATED [] is_a: UBERON:0001418 ! skin of thorax intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001443 ! chest -relationship: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0001869 @@ -6724,8 +6726,8 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0001870 @@ -6738,8 +6740,8 @@ synonym: "gray matter of frontal lobe" EXACT [] synonym: "grey matter of frontal lobe" EXACT [] is_a: UBERON:0016529 ! cortex of cerebral lobe intersection_of: UBERON:0016529 ! cortex of cerebral lobe -intersection_of: BFO:0000050 UBERON:0016525 ! frontal lobe -relationship: BFO:0000050 UBERON:0016525 ! frontal lobe +intersection_of: BFO:0000050 UBERON:0016525 ! part of frontal lobe +relationship: BFO:0000050 UBERON:0016525 ! part of frontal lobe [Term] id: UBERON:0001885 @@ -6754,7 +6756,7 @@ synonym: "gyrus dentatus" RELATED [] synonym: "hippocampal dentate gyrus" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002421 ! hippocampal formation +relationship: BFO:0000050 UBERON:0002421 ! part of hippocampal formation [Term] id: UBERON:0001886 @@ -6769,8 +6771,8 @@ synonym: "ventricular choroid plexus" RELATED [] is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005629 ! vascular plexus is_a: UBERON:0006876 ! vasculature of organ -relationship: BFO:0000050 UBERON:0004086 ! brain ventricle -relationship: BFO:0000050 UBERON:0005283 ! tela choroidea +relationship: BFO:0000050 UBERON:0004086 ! part of brain ventricle +relationship: BFO:0000050 UBERON:0005283 ! part of tela choroidea [Term] id: UBERON:0001890 @@ -6779,8 +6781,8 @@ def: "The most anterior region the brain including both the telencephalon and di synonym: "FB" BROAD [] synonym: "prosencephalon" RELATED [] is_a: UBERON:0002616 ! regional part of brain -relationship: RO:0002202 UBERON:0003080 ! anterior neural tube -relationship: RO:0002202 UBERON:0006240 ! future forebrain +relationship: RO:0002202 UBERON:0003080 ! develops_from anterior neural tube +relationship: RO:0002495 UBERON:0006240 ! immediate transformation of future forebrain [Term] id: UBERON:0001891 @@ -6790,7 +6792,7 @@ synonym: "MB" BROAD [] synonym: "mesencephalon" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: RO:0002202 UBERON:0009616 ! presumptive midbrain +relationship: RO:0002495 UBERON:0009616 ! immediate transformation of presumptive midbrain [Term] id: UBERON:0001892 @@ -6805,8 +6807,8 @@ synonym: "rhombomeres" RELATED [] synonym: "segment of hindbrain" BROAD [] is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere -intersection_of: BFO:0000050 UBERON:0007277 ! presumptive hindbrain -relationship: BFO:0000050 UBERON:0007277 ! presumptive hindbrain +intersection_of: BFO:0000050 UBERON:0007277 ! part of presumptive hindbrain +relationship: BFO:0000050 UBERON:0007277 ! part of presumptive hindbrain [Term] id: UBERON:0001893 @@ -6817,8 +6819,8 @@ synonym: "endbrain" EXACT [] synonym: "supratentorial region" BROAD [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001890 ! forebrain -relationship: RO:0002202 UBERON:0014371 ! future telencephalon +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain +relationship: RO:0002495 UBERON:0014371 ! immediate transformation of future telencephalon [Term] id: UBERON:0001894 @@ -6833,8 +6835,8 @@ synonym: "mature diencephalon" EXACT [] synonym: "thalamencephalon" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001890 ! forebrain -relationship: RO:0002202 UBERON:0006222 ! future diencephalon +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain +relationship: RO:0002495 UBERON:0006222 ! immediate transformation of future diencephalon [Term] id: UBERON:0001895 @@ -6843,7 +6845,7 @@ def: "Rostral segment of the hindbrain that has as its parts the pons (where pre synonym: "epencephalon" BROAD [] synonym: "epencephalon-2" EXACT [] is_a: UBERON:0004733 ! segmental subdivision of hindbrain -relationship: RO:0002202 UBERON:0010092 ! future metencephalon +relationship: RO:0002495 UBERON:0010092 ! immediate transformation of future metencephalon [Term] id: UBERON:0001896 @@ -6857,8 +6859,8 @@ synonym: "metepencephalon" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002298 ! brainstem -relationship: BFO:0000050 UBERON:0005290 ! myelencephalon +relationship: BFO:0000050 UBERON:0002298 ! part of brainstem +relationship: BFO:0000050 UBERON:0005290 ! part of myelencephalon [Term] id: UBERON:0001897 @@ -6871,7 +6873,7 @@ synonym: "thalamus" BROAD [] synonym: "thalamus opticus" RELATED [] synonym: "wider thalamus" EXACT [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0010225 ! thalamic complex +relationship: BFO:0000050 UBERON:0010225 ! part of thalamic complex [Term] id: UBERON:0001898 @@ -6882,8 +6884,8 @@ synonym: "hypothalamus" RELATED [] synonym: "preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0000349 ! limbic system -relationship: BFO:0000050 UBERON:0010225 ! thalamic complex +relationship: BFO:0000050 UBERON:0000349 ! part of limbic system +relationship: BFO:0000050 UBERON:0010225 ! part of thalamic complex [Term] id: UBERON:0001899 @@ -6892,7 +6894,7 @@ def: "Most dorsal part of the thalamus, comprising the pineal gland and habenula synonym: "epithalamus" RELATED [] synonym: "ETh" BROAD [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0001897 ! dorsal plus ventral thalamus +relationship: BFO:0000050 UBERON:0001897 ! part of dorsal plus ventral thalamus [Term] id: UBERON:0001901 @@ -6908,8 +6910,8 @@ synonym: "windpipe epithelial tissue" EXACT [] synonym: "windpipe epithelium" EXACT [] is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0001902 @@ -6926,8 +6928,8 @@ synonym: "small intestine epithelial tissue" EXACT [] synonym: "small intestine epithelium" EXACT [] is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001204 ! mucosa of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001204 ! part of mucosa of small intestine [Term] id: UBERON:0001905 @@ -6947,7 +6949,7 @@ synonym: "pineal organ" EXACT [] synonym: "stirnorgan" RELATED [] is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 ! secretory circumventricular organ -relationship: BFO:0000050 UBERON:0015238 ! pineal complex +relationship: BFO:0000050 UBERON:0015238 ! part of pineal complex [Term] id: UBERON:0001911 @@ -6966,7 +6968,7 @@ synonym: "milk patch" NARROW [] is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0019319 ! exocrine gland of integumental system -relationship: RO:0002202 UBERON:0005333 ! mammary bud +relationship: RO:0002202 UBERON:0005333 ! develops_from mammary bud [Term] id: UBERON:0001912 @@ -6982,7 +6984,7 @@ synonym: "mammary acinus" EXACT [] synonym: "mammary gland lobule" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009911 ! lobule -relationship: BFO:0000050 UBERON:0001911 ! mammary gland +relationship: BFO:0000050 UBERON:0001911 ! part of mammary gland [Term] id: UBERON:0001915 @@ -6995,8 +6997,8 @@ synonym: "endothelium of blood capillary" EXACT [] synonym: "endothelium of capillary vessel" EXACT [] is_a: UBERON:0004638 ! blood vessel endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001982 ! capillary -relationship: BFO:0000050 UBERON:0001982 ! capillary +intersection_of: BFO:0000050 UBERON:0001982 ! part of capillary +relationship: BFO:0000050 UBERON:0001982 ! part of capillary [Term] id: UBERON:0001916 @@ -7006,8 +7008,8 @@ synonym: "arteriole endothelium" EXACT [] is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001980 ! arteriole -relationship: BFO:0000050 UBERON:0001980 ! arteriole +intersection_of: BFO:0000050 UBERON:0001980 ! part of arteriole +relationship: BFO:0000050 UBERON:0001980 ! part of arteriole [Term] id: UBERON:0001917 @@ -7019,8 +7021,8 @@ is_a: UBERON:0003915 ! endothelial tube is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001637 ! artery -relationship: BFO:0000050 UBERON:0001637 ! artery +intersection_of: BFO:0000050 UBERON:0001637 ! part of artery +relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0001918 @@ -7030,8 +7032,8 @@ synonym: "venule endothelium" EXACT [] is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001979 ! venule -relationship: BFO:0000050 UBERON:0001979 ! venule +intersection_of: BFO:0000050 UBERON:0001979 ! part of venule +relationship: BFO:0000050 UBERON:0001979 ! part of venule [Term] id: UBERON:0001919 @@ -7043,8 +7045,8 @@ synonym: "venous endothelium" EXACT [] is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001638 ! vein -relationship: BFO:0000050 UBERON:0001638 ! vein +intersection_of: BFO:0000050 UBERON:0001638 ! part of vein +relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0001930 @@ -7065,7 +7067,7 @@ synonym: "paraventricular nucleus of the hypothalamus" RELATED [] synonym: "parvocellular hypothalamic nucleus" RELATED [] synonym: "subcommissural nucleus (Ziehen)" RELATED [] is_a: UBERON:0006568 ! hypothalamic nucleus -relationship: BFO:0000050 UBERON:0002271 ! periventricular zone of hypothalamus +relationship: BFO:0000050 UBERON:0002271 ! part of periventricular zone of hypothalamus [Term] id: UBERON:0001943 @@ -7078,9 +7080,9 @@ synonym: "tegmentum mesencephali" EXACT [] synonym: "tegmentum mesencephalicum" RELATED [] synonym: "tegmentum of midbrain" EXACT [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0001891 ! midbrain -relationship: BFO:0000050 UBERON:0002298 ! brainstem -relationship: RO:0002202 UBERON:0010285 ! midbrain basal plate +relationship: BFO:0000050 UBERON:0001891 ! part of midbrain +relationship: BFO:0000050 UBERON:0002298 ! part of brainstem +relationship: RO:0002202 UBERON:0010285 ! develops_from midbrain basal plate [Term] id: UBERON:0001948 @@ -7090,8 +7092,8 @@ synonym: "spinal cord part" RELATED [] is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0001949 @@ -7105,8 +7107,8 @@ is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0006915 ! stratified squamous epithelium is_a: UBERON:0035037 ! jaw epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001828 ! gingiva -relationship: BFO:0000050 UBERON:0001828 ! gingiva +intersection_of: BFO:0000050 UBERON:0001828 ! part of gingiva +relationship: BFO:0000050 UBERON:0001828 ! part of gingiva [Term] id: UBERON:0001950 @@ -7125,7 +7127,7 @@ synonym: "nonolfactory cortex" RELATED [] synonym: "nucleus hypoglossalis" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000956 ! cerebral cortex +relationship: BFO:0000050 UBERON:0000956 ! part of cerebral cortex [Term] id: UBERON:0001951 @@ -7146,9 +7148,9 @@ synonym: "rhinopharynx epithelium" EXACT [] is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0004814 ! upper respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001728 ! nasopharynx -relationship: BFO:0000050 UBERON:0001728 ! nasopharynx -relationship: BFO:0000050 UBERON:0003929 ! digestive tract epithelium +intersection_of: BFO:0000050 UBERON:0001728 ! part of nasopharynx +relationship: BFO:0000050 UBERON:0001728 ! part of nasopharynx +relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium [Term] id: UBERON:0001954 @@ -7166,9 +7168,9 @@ synonym: "hippocampus proper" EXACT [] synonym: "hippocampus proprius" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000349 ! limbic system -relationship: BFO:0000050 UBERON:0002421 ! hippocampal formation -relationship: BFO:0000050 UBERON:0002600 ! limbic lobe +relationship: BFO:0000050 UBERON:0000349 ! part of limbic system +relationship: BFO:0000050 UBERON:0002421 ! part of hippocampal formation +relationship: BFO:0000050 UBERON:0002600 ! part of limbic lobe [Term] id: UBERON:0001955 @@ -7183,8 +7185,8 @@ synonym: "respiratory bronchiole epithelial tissue" EXACT [] synonym: "respiratory bronchiole epithelium" EXACT [] is_a: UBERON:0002051 ! epithelium of bronchiole intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002188 ! respiratory bronchiole -relationship: BFO:0000050 UBERON:0002188 ! respiratory bronchiole +intersection_of: BFO:0000050 UBERON:0002188 ! part of respiratory bronchiole +relationship: BFO:0000050 UBERON:0002188 ! part of respiratory bronchiole [Term] id: UBERON:0001956 @@ -7200,9 +7202,9 @@ synonym: "cartilage of bronchial trunk" EXACT [] synonym: "cartilagines bronchiales" EXACT [] is_a: UBERON:0003603 ! lower respiratory tract cartilage intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000051 UBERON:0001994 ! hyaline cartilage tissue +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000051 UBERON:0001994 ! has part hyaline cartilage tissue [Term] id: UBERON:0001957 @@ -7219,8 +7221,8 @@ synonym: "tela submucosa bronchi" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0001958 @@ -7236,8 +7238,8 @@ synonym: "terminal bronchiole epithelial tissue" EXACT [] synonym: "terminal bronchiole epithelium" EXACT [] is_a: UBERON:0002051 ! epithelium of bronchiole intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002187 ! terminal bronchiole -relationship: BFO:0000050 UBERON:0002187 ! terminal bronchiole +intersection_of: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole +relationship: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole [Term] id: UBERON:0001959 @@ -7271,8 +7273,8 @@ synonym: "GALT" RELATED [] synonym: "gut associated lymphoid tissue" EXACT [] is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0001963 @@ -7283,8 +7285,8 @@ synonym: "bronchus associated lymphoid tissue" EXACT [] is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0001969 @@ -7295,7 +7297,7 @@ synonym: "plasma" BROAD [] synonym: "portion of blood plasma" EXACT [] synonym: "portion of plasma" BROAD [] is_a: UBERON:0000179 ! haemolymphatic fluid -relationship: BFO:0000050 UBERON:0000178 ! blood +relationship: BFO:0000050 UBERON:0000178 ! part of blood [Term] id: UBERON:0001972 @@ -7316,8 +7318,8 @@ synonym: "tela submucosa oesophagi" RELATED [] synonym: "tela submucosa of esophagus" EXACT [] is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001096 ! wall of esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0001974 @@ -7343,8 +7345,8 @@ synonym: "oesophagus lamina propria mucosa" EXACT [] synonym: "oesophagus lamina propria mucosae" EXACT [] is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0002469 ! esophagus mucosa +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0002469 ! part of esophagus mucosa [Term] id: UBERON:0001975 @@ -7366,8 +7368,8 @@ synonym: "serous membrane of oesophagus" EXACT [] synonym: "tunica serosa oesophageae" EXACT [] is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001096 ! wall of esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0001976 @@ -7388,8 +7390,8 @@ synonym: "oesophagus epithelium" RELATED [] is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0002469 ! esophagus mucosa +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0002469 ! part of esophagus mucosa [Term] id: UBERON:0001978 @@ -7398,8 +7400,8 @@ synonym: "pancreas parenchyma" EXACT [] synonym: "pancreatic parenchyma" EXACT [] is_a: UBERON:0000353 ! parenchyma intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000050 UBERON:0001264 ! pancreas +intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0001979 @@ -7425,10 +7427,10 @@ synonym: "vascular element" BROAD [] synonym: "vascular tree organ region" EXACT [] is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004537 ! blood vasculature -relationship: BFO:0000051 UBERON:0007500 ! epithelial tube open at both ends -relationship: RO:0002202 UBERON:0004872 ! splanchnic layer of lateral plate mesoderm -relationship: RO:0002202 UBERON:0006965 ! vascular cord +relationship: BFO:0000050 UBERON:0004537 ! part of blood vasculature +relationship: BFO:0000051 UBERON:0007500 ! has part epithelial tube open at both ends +relationship: RO:0002202 UBERON:0004872 ! develops_from splanchnic layer of lateral plate mesoderm +relationship: RO:0002202 UBERON:0006965 ! develops_from vascular cord [Term] id: UBERON:0001982 @@ -7470,8 +7472,8 @@ synonym: "large intestine lieberkuhn crypt" EXACT [] synonym: "lieberkuhn crypt of large intestine" EXACT [] is_a: UBERON:0001983 ! crypt of Lieberkuhn intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001207 ! mucosa of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001207 ! part of mucosa of large intestine [Term] id: UBERON:0001985 @@ -7484,9 +7486,9 @@ is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0000964 ! cornea -relationship: BFO:0000050 UBERON:0000964 ! cornea -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea +relationship: BFO:0000050 UBERON:0000964 ! part of cornea +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0001986 @@ -7494,7 +7496,7 @@ name: endothelium def: "A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]" [] is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0012275 ! meso-epithelium -relationship: RO:0002202 UBERON:0000926 ! mesoderm +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0001987 @@ -7505,11 +7507,11 @@ synonym: "eutherian placenta" EXACT [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure -relationship: BFO:0000050 UBERON:0000474 ! female reproductive system -relationship: BFO:0000050 UBERON:0016887 ! entire extraembryonic component -relationship: RO:0002202 UBERON:0000995 ! uterus -relationship: RO:0002202 UBERON:0003124 ! chorion -relationship: RO:0002202 UBERON:0004340 ! allantois +relationship: BFO:0000050 UBERON:0000474 ! part of female reproductive system +relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component +relationship: RO:0002202 UBERON:0000995 ! develops_from uterus +relationship: RO:0002202 UBERON:0003124 ! develops_from chorion +relationship: RO:0002202 UBERON:0004340 ! develops_from allantois [Term] id: UBERON:0001992 @@ -7529,9 +7531,9 @@ synonym: "stratum papillare dermis" EXACT [] synonym: "superficial dermis" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0002067 ! dermis -relationship: BFO:0000051 UBERON:0006815 ! areolar connective tissue -relationship: BFO:0000051 UBERON:0011822 ! dense irregular connective tissue +relationship: BFO:0000050 UBERON:0002067 ! part of dermis +relationship: BFO:0000051 UBERON:0006815 ! has part areolar connective tissue +relationship: BFO:0000051 UBERON:0011822 ! has part dense irregular connective tissue [Term] id: UBERON:0001993 @@ -7546,8 +7548,8 @@ synonym: "stratum reticulare" RELATED [] synonym: "stratum reticulare dermis" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0002067 ! dermis -relationship: BFO:0000050 UBERON:0008877 ! epidermal-dermal junction +relationship: BFO:0000050 UBERON:0002067 ! part of dermis +relationship: BFO:0000050 UBERON:0008877 ! part of epidermal-dermal junction [Term] id: UBERON:0001994 @@ -7576,7 +7578,7 @@ synonym: "yellow cartilage" RELATED [] synonym: "yellow elastic cartilage" EXACT [] synonym: "yellow elastic cartilage tissue" EXACT [] is_a: UBERON:0011589 ! non-mineralized cartilage tissue -relationship: RO:0002202 UBERON:0005863 ! cartilaginous condensation +relationship: RO:0002202 UBERON:0005863 ! develops_from cartilaginous condensation [Term] id: UBERON:0001997 @@ -7595,10 +7597,10 @@ is_a: UBERON:0005384 ! nasal cavity epithelium is_a: UBERON:0006934 ! sensory epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0006934 ! sensory epithelium -intersection_of: BFO:0000050 UBERON:0005386 ! olfactory segment of nasal mucosa -relationship: BFO:0000050 UBERON:0000012 ! somatic nervous system -relationship: BFO:0000050 UBERON:0005386 ! olfactory segment of nasal mucosa -relationship: RO:0002202 UBERON:2001431 ! primitive olfactory epithelium +intersection_of: BFO:0000050 UBERON:0005386 ! part of olfactory segment of nasal mucosa +relationship: BFO:0000050 UBERON:0000012 ! part of somatic nervous system +relationship: BFO:0000050 UBERON:0005386 ! part of olfactory segment of nasal mucosa +relationship: RO:0002495 UBERON:2001431 ! immediate transformation of primitive olfactory epithelium [Term] id: UBERON:0002005 @@ -7608,8 +7610,8 @@ synonym: "enteric PNS" EXACT [] synonym: "PNS - enteric" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0002410 ! autonomic nervous system -relationship: RO:0002202 UBERON:0005428 ! vagal neural crest +relationship: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system +relationship: RO:0002202 UBERON:0005428 ! develops_from vagal neural crest [Term] id: UBERON:0002006 @@ -7619,8 +7621,8 @@ synonym: "cortex nodi lymphoidei" RELATED [] synonym: "lymph node cortex" EXACT [] is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000050 UBERON:0000029 ! lymph node +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000050 UBERON:0000029 ! part of lymph node [Term] id: UBERON:0002007 @@ -7630,10 +7632,10 @@ synonym: "lymph node medulla" EXACT [] synonym: "medulla nodi lymphoidei" RELATED [] is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000051 UBERON:0009744 ! lymph node medullary sinus -relationship: BFO:0000051 UBERON:0009745 ! lymph node medullary cord +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000051 UBERON:0009744 ! has part lymph node medullary sinus +relationship: BFO:0000051 UBERON:0009745 ! has part lymph node medullary cord [Term] id: UBERON:0002012 @@ -7648,10 +7650,10 @@ is_a: UBERON:0001637 ! artery is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013768 ! great vessel of heart disjoint_from: UBERON:0004573 ! systemic artery -relationship: BFO:0000050 UBERON:0008886 ! pulmonary vascular system -relationship: RO:0002202 UBERON:0002061 ! truncus arteriosus -relationship: RO:0002202 UBERON:0003123 ! pharyngeal arch artery 6 -relationship: RO:0002202 UBERON:0005339 ! outflow tract pulmonary component +relationship: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system +relationship: RO:0002202 UBERON:0002061 ! develops_from truncus arteriosus +relationship: RO:0002202 UBERON:0003123 ! develops_from pharyngeal arch artery 6 +relationship: RO:0002202 UBERON:0005339 ! develops_from outflow tract pulmonary component [Term] id: UBERON:0002016 @@ -7662,8 +7664,8 @@ synonym: "venae pulmonales" RELATED [] is_a: UBERON:0001638 ! vein is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013768 ! great vessel of heart -relationship: BFO:0000050 UBERON:0008886 ! pulmonary vascular system -relationship: RO:0002202 UBERON:0002061 ! truncus arteriosus +relationship: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system +relationship: RO:0002202 UBERON:0002061 ! develops_from truncus arteriosus [Term] id: UBERON:0002017 @@ -7671,7 +7673,7 @@ name: portal vein def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [] synonym: "portal venous tree organ part" EXACT [] is_a: UBERON:0001638 ! vein -relationship: BFO:0000050 UBERON:0005806 ! portal system +relationship: BFO:0000050 UBERON:0005806 ! part of portal system [Term] id: UBERON:0002018 @@ -7691,7 +7693,7 @@ is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0006915 ! stratified squamous epithelium is_a: UBERON:0007616 ! layer of synovial tissue is_a: UBERON:0012275 ! meso-epithelium -relationship: BFO:0000050 UBERON:0002217 ! synovial joint +relationship: BFO:0000050 UBERON:0002217 ! part of synovial joint [Term] id: UBERON:0002020 @@ -7733,7 +7735,7 @@ synonym: "stratum Malpighi" BROAD [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis [Term] id: UBERON:0002026 @@ -7749,7 +7751,7 @@ synonym: "stratum Malpighii" BROAD [] synonym: "stratum spinosum" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis [Term] id: UBERON:0002027 @@ -7773,8 +7775,8 @@ def: "The most posterior of the three principal regions of the brain. In mammals synonym: "rhombencephalon" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: RO:0002202 UBERON:0007277 ! presumptive hindbrain +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: RO:0002495 UBERON:0007277 ! immediate transformation of presumptive hindbrain [Term] id: UBERON:0002029 @@ -7791,8 +7793,8 @@ synonym: "gallbladder epithelium" EXACT [] is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002110 ! gall bladder -relationship: BFO:0000050 UBERON:0002110 ! gall bladder +intersection_of: BFO:0000050 UBERON:0002110 ! part of gall bladder +relationship: BFO:0000050 UBERON:0002110 ! part of gall bladder [Term] id: UBERON:0002031 @@ -7812,8 +7814,8 @@ synonym: "epithelium of bronchi" EXACT [] synonym: "epithelium of bronchial trunk" EXACT [] is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0002033 @@ -7831,7 +7833,7 @@ synonym: "erector pili" RELATED [] synonym: "erectores pilorum" RELATED [] synonym: "pilomotor muscle" RELATED [] is_a: UBERON:0001135 ! smooth muscle tissue -relationship: BFO:0000050 UBERON:0011932 ! pilosebaceous unit +relationship: BFO:0000050 UBERON:0011932 ! part of pilosebaceous unit [Term] id: UBERON:0002036 @@ -7850,9 +7852,9 @@ synonym: "infratentorial region" BROAD [] synonym: "parencephalon" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001895 ! metencephalon -relationship: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: RO:0002202 UBERON:0006215 ! rhombic lip +relationship: BFO:0000050 UBERON:0001895 ! part of metencephalon +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: RO:0002202 UBERON:0006215 ! develops_from rhombic lip [Term] id: UBERON:0002038 @@ -7865,8 +7867,8 @@ synonym: "Soemmering's substance" EXACT [] synonym: "substancia nigra" RELATED [] synonym: "substantia nigra (Soemmerringi)" RELATED [] is_a: UBERON:0009661 ! midbrain nucleus -relationship: BFO:0000050 UBERON:0001891 ! midbrain -relationship: BFO:0000050 UBERON:0002420 ! basal ganglion +relationship: BFO:0000050 UBERON:0001891 ! part of midbrain +relationship: BFO:0000050 UBERON:0002420 ! part of basal ganglion [Term] id: UBERON:0002042 @@ -7879,8 +7881,8 @@ synonym: "lymphatic endothelium" EXACT [] synonym: "lymphatic vessel endothelium" EXACT [] is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001473 ! lymphatic vessel -relationship: BFO:0000050 UBERON:0001473 ! lymphatic vessel +intersection_of: BFO:0000050 UBERON:0001473 ! part of lymphatic vessel +relationship: BFO:0000050 UBERON:0001473 ! part of lymphatic vessel [Term] id: UBERON:0002046 @@ -7891,7 +7893,7 @@ synonym: "thyroid" EXACT [] is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: RO:0002202 UBERON:0007689 ! thyroid diverticulum +relationship: RO:0002202 UBERON:0007689 ! develops_from thyroid diverticulum [Term] id: UBERON:0002048 @@ -7902,8 +7904,8 @@ is_a: UBERON:0000171 ! respiration organ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000170 ! pair of lungs -relationship: RO:0002202 UBERON:0000118 ! lung bud +relationship: BFO:0000050 UBERON:0000170 ! part of pair of lungs +relationship: RO:0002202 UBERON:0000118 ! develops_from lung bud [Term] id: UBERON:0002049 @@ -7911,9 +7913,9 @@ name: vasculature def: "An interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [] synonym: "vascular network" EXACT [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0007798 ! vascular system -relationship: BFO:0000051 UBERON:0000055 ! vessel -relationship: BFO:0000051 UBERON:0000179 ! haemolymphatic fluid +relationship: BFO:0000050 UBERON:0007798 ! part of vascular system +relationship: BFO:0000051 UBERON:0000055 ! has part vessel +relationship: BFO:0000051 UBERON:0000179 ! has part haemolymphatic fluid [Term] id: UBERON:0002050 @@ -7926,8 +7928,8 @@ synonym: "embryonic anatomical structure" EXACT [] synonym: "embryonic structures" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure -intersection_of: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0000922 ! embryo +intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0000922 ! part of embryo [Term] id: UBERON:0002051 @@ -7946,8 +7948,8 @@ is_a: UBERON:0002031 ! epithelium of bronchus is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0004802 ! respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002186 ! bronchiole -relationship: BFO:0000050 UBERON:0005039 ! mucosa of bronchiole +intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole +relationship: BFO:0000050 UBERON:0005039 ! part of mucosa of bronchiole [Term] id: UBERON:0002053 @@ -7967,9 +7969,9 @@ is_a: UBERON:0001637 ! artery is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: BFO:0000050 UBERON:0005498 ! primitive heart tube -relationship: RO:0002202 UBERON:0005432 ! aortic sac +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: BFO:0000050 UBERON:0005498 ! part of primitive heart tube +relationship: RO:0002202 UBERON:0005432 ! develops_from aortic sac [Term] id: UBERON:0002062 @@ -7986,9 +7988,9 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0009751 ! cardiac mesenchyme is_a: UBERON:0014387 ! mesenchyme derived from neural crest -relationship: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0002165 ! endocardium -relationship: RO:0002202 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0002165 ! part of endocardium +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0002066 @@ -8009,10 +8011,10 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0002097 ! skin of body -relationship: BFO:0000051 UBERON:0002384 ! connective tissue -relationship: BFO:0000051 UBERON:0011860 ! collection of collagen fibrils -relationship: RO:0002202 UBERON:0010083 ! future dermis +relationship: BFO:0000050 UBERON:0002097 ! part of skin of body +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue +relationship: BFO:0000051 UBERON:0011860 ! has part collection of collagen fibrils +relationship: RO:0002495 UBERON:0010083 ! immediate transformation of future dermis [Term] id: UBERON:0002069 @@ -8024,7 +8026,7 @@ synonym: "granular layer of epidermis" EXACT [] synonym: "stratum granulosum" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis [Term] id: UBERON:0002072 @@ -8041,9 +8043,9 @@ synonym: "vertebrate hypodermis" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0013754 ! integumentary system layer -relationship: BFO:0000050 UBERON:0002199 ! integument -relationship: BFO:0000051 UBERON:0001013 ! adipose tissue -relationship: BFO:0000051 UBERON:0011825 ! loose connective tissue +relationship: BFO:0000050 UBERON:0002199 ! part of integument +relationship: BFO:0000051 UBERON:0001013 ! has part adipose tissue +relationship: BFO:0000051 UBERON:0011825 ! has part loose connective tissue [Term] id: UBERON:0002073 @@ -8052,9 +8054,9 @@ def: "A tube-like opening in the epidermis where the hair shaft develops and int synonym: "folliculus pili" RELATED [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036150 ! skin appendage follicle -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis -relationship: BFO:0000050 UBERON:0011932 ! pilosebaceous unit -relationship: RO:0002202 UBERON:0005086 ! hair follicle placode +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis +relationship: BFO:0000050 UBERON:0011932 ! part of pilosebaceous unit +relationship: RO:0002202 UBERON:0005086 ! develops_from hair follicle placode [Term] id: UBERON:0002074 @@ -8065,7 +8067,7 @@ synonym: "shaft of hair" EXACT [] is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001037 ! strand of hair +relationship: BFO:0000050 UBERON:0001037 ! part of strand of hair [Term] id: UBERON:0002075 @@ -8092,8 +8094,8 @@ is_a: UBERON:0001851 ! cortex is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001851 ! cortex -intersection_of: BFO:0000050 UBERON:0001037 ! strand of hair -relationship: BFO:0000050 UBERON:0002074 ! hair shaft +intersection_of: BFO:0000050 UBERON:0001037 ! part of strand of hair +relationship: BFO:0000050 UBERON:0002074 ! part of hair shaft [Term] id: UBERON:0002080 @@ -8106,7 +8108,7 @@ synonym: "right ventricle of heart" EXACT [] synonym: "ventriculus dexter" RELATED [] is_a: UBERON:0002082 ! cardiac ventricle is_a: UBERON:0035554 ! right cardiac chamber -relationship: RO:0002202 UBERON:0009889 ! secondary heart field +relationship: RO:0002202 UBERON:0009889 ! develops_from secondary heart field [Term] id: UBERON:0002081 @@ -8119,7 +8121,7 @@ synonym: "atrium of heart" EXACT [] synonym: "cardiac atria" EXACT [] synonym: "heart atrium" EXACT [] is_a: UBERON:0004151 ! cardiac chamber -relationship: RO:0002202 UBERON:0010227 ! future cardiac atrium +relationship: RO:0002495 UBERON:0010227 ! immediate transformation of future cardiac atrium [Term] id: UBERON:0002082 @@ -8130,7 +8132,7 @@ synonym: "lower chamber of heart" EXACT [] synonym: "ventricle" BROAD [] synonym: "ventricle of heart" EXACT [] is_a: UBERON:0004151 ! cardiac chamber -relationship: RO:0002202 UBERON:0006283 ! future cardiac ventricle +relationship: RO:0002495 UBERON:0006283 ! immediate transformation of future cardiac ventricle [Term] id: UBERON:0002084 @@ -8143,7 +8145,7 @@ synonym: "left ventricle of heart" EXACT [] synonym: "ventriculus sinister cordis" RELATED [] is_a: UBERON:0002082 ! cardiac ventricle is_a: UBERON:0035553 ! left cardiac chamber -relationship: RO:0002202 UBERON:0004140 ! primary heart field +relationship: RO:0002202 UBERON:0004140 ! develops_from primary heart field [Term] id: UBERON:0002085 @@ -8161,8 +8163,8 @@ def: "The postcranial subdivision of skeleton structural components forming the synonym: "axial skeleton" BROAD [] synonym: "post-cranial axial skeleton" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0005944 ! axial skeleton plus cranial skeleton -relationship: BFO:0000050 UBERON:0011138 ! postcranial axial skeletal system +relationship: BFO:0000050 UBERON:0005944 ! part of axial skeleton plus cranial skeleton +relationship: BFO:0000050 UBERON:0011138 ! part of postcranial axial skeletal system [Term] id: UBERON:0002091 @@ -8173,7 +8175,7 @@ synonym: "entire appendicular skeleton" EXACT [] synonym: "paired fin skeleton" NARROW [] synonym: "skeleton appendiculare" RELATED [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0011249 ! appendicular skeletal system +relationship: BFO:0000050 UBERON:0011249 ! part of appendicular skeletal system [Term] id: UBERON:0002092 @@ -8186,7 +8188,7 @@ synonym: "dura mater of brain" EXACT [] is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0000955 ! brain +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0002093 @@ -8199,7 +8201,7 @@ synonym: "spinal cord dura mater of neuraxis" EXACT [] is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003292 ! meninx of spinal cord intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0002094 @@ -8238,9 +8240,9 @@ synonym: "skin" RELATED [] synonym: "skin organ" EXACT [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0002199 ! integument -relationship: BFO:0000051 UBERON:0000014 ! zone of skin -relationship: RO:0002202 UBERON:0011272 ! embryonic skin basal layer +relationship: BFO:0000050 UBERON:0002199 ! part of integument +relationship: BFO:0000051 UBERON:0000014 ! has part zone of skin +relationship: RO:0002202 UBERON:0011272 ! develops_from embryonic skin basal layer [Term] id: UBERON:0002099 @@ -8254,8 +8256,8 @@ synonym: "spiral septa" RELATED [] is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003037 ! septum -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0002100 @@ -8266,7 +8268,7 @@ synonym: "thoracolumbar region" EXACT [] synonym: "torso" EXACT [] synonym: "trunk region" EXACT [] is_a: UBERON:0011676 ! subdivision of organism along main body axis -relationship: BFO:0000050 UBERON:0013702 ! body proper +relationship: BFO:0000050 UBERON:0013702 ! part of body proper [Term] id: UBERON:0002101 @@ -8280,8 +8282,8 @@ synonym: "limb sensu Vertebrata" EXACT [] synonym: "pentadactyl limb" EXACT [] synonym: "tetrapod limb" EXACT [] is_a: UBERON:0004708 ! paired limb/fin -relationship: BFO:0000051 UBERON:0004381 ! skeleton of limb -relationship: RO:0002202 UBERON:0004347 ! limb bud +relationship: BFO:0000051 UBERON:0004381 ! has part skeleton of limb +relationship: RO:0002202 UBERON:0004347 ! develops_from limb bud [Term] id: UBERON:0002102 @@ -8302,10 +8304,10 @@ synonym: "upper limb" EXACT [] is_a: UBERON:0002101 ! limb is_a: UBERON:0004710 ! pectoral appendage intersection_of: UBERON:0002101 ! limb -intersection_of: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000050 UBERON:0000153 ! anterior region of body -relationship: BFO:0000051 UBERON:0001440 ! forelimb skeleton -relationship: RO:0002202 UBERON:0005417 ! forelimb bud +intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body +relationship: BFO:0000051 UBERON:0001440 ! has part forelimb skeleton +relationship: RO:0002202 UBERON:0005417 ! develops_from forelimb bud [Term] id: UBERON:0002103 @@ -8325,10 +8327,10 @@ synonym: "pelvic appendage" RELATED [] is_a: UBERON:0002101 ! limb is_a: UBERON:0004709 ! pelvic appendage intersection_of: UBERON:0002101 ! limb -intersection_of: BFO:0000050 UBERON:0010709 ! pelvic complex -relationship: BFO:0000050 UBERON:0000154 ! posterior region of body -relationship: BFO:0000051 UBERON:0001441 ! hindlimb skeleton -relationship: RO:0002202 UBERON:0005418 ! hindlimb bud +intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex +relationship: BFO:0000050 UBERON:0000154 ! part of posterior region of body +relationship: BFO:0000051 UBERON:0001441 ! has part hindlimb skeleton +relationship: RO:0002202 UBERON:0005418 ! develops_from hindlimb bud [Term] id: UBERON:0002104 @@ -8358,8 +8360,8 @@ is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0017672 ! abdominal viscera -relationship: BFO:0000050 UBERON:0002390 ! hematopoietic system -relationship: RO:0002202 UBERON:0006293 ! spleen primordium +relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system +relationship: RO:0002202 UBERON:0006293 ! develops_from spleen primordium [Term] id: UBERON:0002107 @@ -8371,15 +8373,15 @@ is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006925 ! digestive system gland -relationship: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: BFO:0000050 UBERON:0001007 ! digestive system -relationship: BFO:0000050 UBERON:0002330 ! exocrine system -relationship: BFO:0000050 UBERON:0002423 ! hepatobiliary system -relationship: BFO:0000051 UBERON:0004647 ! liver lobule -relationship: RO:0002202 UBERON:0003894 ! liver primordium -relationship: RO:0002202 UBERON:0004161 ! septum transversum -relationship: RO:0002202 UBERON:0008836 ! liver bud +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: BFO:0000050 UBERON:0001007 ! part of digestive system +relationship: BFO:0000050 UBERON:0002330 ! part of exocrine system +relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system +relationship: BFO:0000051 UBERON:0004647 ! has part liver lobule +relationship: RO:0002202 UBERON:0003894 ! develops_from liver primordium +relationship: RO:0002202 UBERON:0004161 ! develops_from septum transversum +relationship: RO:0002202 UBERON:0008836 ! develops_from liver bud [Term] id: UBERON:0002108 @@ -8392,7 +8394,7 @@ synonym: "small bowel" EXACT [] synonym: "small intestine" EXACT [] is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0000160 ! intestine +relationship: BFO:0000050 UBERON:0000160 ! part of intestine [Term] id: UBERON:0002110 @@ -8406,8 +8408,8 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0017672 ! abdominal viscera is_a: UBERON:0018707 ! bladder organ -relationship: BFO:0000050 UBERON:0002423 ! hepatobiliary system -relationship: RO:0002202 UBERON:0006242 ! gall bladder primordium +relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system +relationship: RO:0002202 UBERON:0006242 ! develops_from gall bladder primordium [Term] id: UBERON:0002111 @@ -8422,8 +8424,8 @@ is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001637 ! artery -relationship: BFO:0000050 UBERON:0001637 ! artery +intersection_of: BFO:0000050 UBERON:0001637 ! part of artery +relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0002112 @@ -8455,8 +8457,8 @@ synonym: "smooth muscle tissue of gullet" EXACT [] synonym: "smooth muscle tissue of oesophagus" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0003832 ! esophagus muscle +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0003832 ! part of esophagus muscle [Term] id: UBERON:0002113 @@ -8466,10 +8468,10 @@ synonym: "reniculate kidney" NARROW [] is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000050 UBERON:0011143 ! upper urinary tract -relationship: RO:0002202 UBERON:0003918 ! kidney mesenchyme -relationship: RO:0002202 UBERON:0005095 ! kidney rudiment +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000050 UBERON:0011143 ! part of upper urinary tract +relationship: RO:0002202 UBERON:0003918 ! develops_from kidney mesenchyme +relationship: RO:0002202 UBERON:0005095 ! develops_from kidney rudiment [Term] id: UBERON:0002114 @@ -8478,7 +8480,7 @@ def: "The first part of the small intestine. At the junction of the stomach and synonym: "proximal intestine" RELATED [] synonym: "upper intestine" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0002108 ! small intestine +relationship: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0002115 @@ -8488,8 +8490,8 @@ synonym: "intestinum jejunum" RELATED [] synonym: "mid-intestine" RELATED [] synonym: "middle intestine" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0002108 ! small intestine -relationship: RO:0002202 UBERON:0001045 ! midgut +relationship: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: RO:0002202 UBERON:0001045 ! develops_from midgut [Term] id: UBERON:0002116 @@ -8500,7 +8502,7 @@ synonym: "intestinum ileum" RELATED [] synonym: "lower intestine" RELATED [] synonym: "posterior intestine" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0002108 ! small intestine +relationship: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0002118 @@ -8508,7 +8510,7 @@ name: right ovary def: "An ovary that is part of a right side of organism [Automatically generated definition]." [] is_a: UBERON:0000992 ! ovary is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0002119 @@ -8516,7 +8518,7 @@ name: left ovary def: "An ovary that is part of a left side of organism [Automatically generated definition]." [] is_a: UBERON:0000992 ! ovary is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0002120 @@ -8529,9 +8531,9 @@ synonym: "pronephron" RELATED [] is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure -relationship: RO:0002202 UBERON:0005095 ! kidney rudiment -relationship: RO:0002202 UBERON:0005721 ! pronephric mesoderm -relationship: RO:0002202 UBERON:0005754 ! rostral part of nephrogenic cord +relationship: RO:0002202 UBERON:0005095 ! develops_from kidney rudiment +relationship: RO:0002202 UBERON:0005721 ! develops_from pronephric mesoderm +relationship: RO:0002202 UBERON:0005754 ! develops_from rostral part of nephrogenic cord [Term] id: UBERON:0002123 @@ -8542,8 +8544,8 @@ synonym: "thymus cortex" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex -intersection_of: BFO:0000050 UBERON:0002370 ! thymus -relationship: BFO:0000050 UBERON:0002370 ! thymus +intersection_of: BFO:0000050 UBERON:0002370 ! part of thymus +relationship: BFO:0000050 UBERON:0002370 ! part of thymus [Term] id: UBERON:0002124 @@ -8555,8 +8557,8 @@ synonym: "thymus medulla" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0002370 ! thymus -relationship: BFO:0000050 UBERON:0002370 ! thymus +intersection_of: BFO:0000050 UBERON:0002370 ! part of thymus +relationship: BFO:0000050 UBERON:0002370 ! part of thymus [Term] id: UBERON:0002125 @@ -8568,8 +8570,8 @@ synonym: "thymus lobule" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule -intersection_of: BFO:0000050 UBERON:0002370 ! thymus -relationship: BFO:0000050 UBERON:0002370 ! thymus +intersection_of: BFO:0000050 UBERON:0002370 ! part of thymus +relationship: BFO:0000050 UBERON:0002370 ! part of thymus [Term] id: UBERON:0002129 @@ -8579,7 +8581,7 @@ synonym: "cortex cerebellaris" RELATED [] synonym: "cortex cerebelli" RELATED [] synonym: "cortex of cerebellar hemisphere" EXACT [] is_a: UBERON:0019263 ! gray matter of hindbrain -relationship: BFO:0000050 UBERON:0002037 ! cerebellum +relationship: BFO:0000050 UBERON:0002037 ! part of cerebellum [Term] id: UBERON:0002165 @@ -8591,8 +8593,8 @@ synonym: "heart endocardial tissue" RELATED [] synonym: "heart endocardium" EXACT [] is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! heart layer -relationship: BFO:0000051 UBERON:0005316 ! endocardial endothelium -relationship: RO:0002202 UBERON:0007280 ! presumptive endocardium +relationship: BFO:0000051 UBERON:0005316 ! has part endocardial endothelium +relationship: RO:0002495 UBERON:0007280 ! immediate transformation of presumptive endocardium [Term] id: UBERON:0002166 @@ -8611,22 +8613,22 @@ synonym: "endocardium of heart atrium" EXACT [] synonym: "heart atrium endocardium" EXACT [] is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium -intersection_of: BFO:0000050 UBERON:0002081 ! cardiac atrium -relationship: BFO:0000050 UBERON:0002081 ! cardiac atrium +intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium +relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium [Term] id: UBERON:0002167 name: right lung def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [] is_a: UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0000170 ! pair of lungs +relationship: BFO:0000050 UBERON:0000170 ! part of pair of lungs [Term] id: UBERON:0002168 name: left lung def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [] is_a: UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0000170 ! pair of lungs +relationship: BFO:0000050 UBERON:0000170 ! part of pair of lungs [Term] id: UBERON:0002169 @@ -8639,9 +8641,9 @@ is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0000117 ! respiratory tube is_a: UBERON:0007499 ! epithelial sac intersection_of: UBERON:0007499 ! epithelial sac -intersection_of: BFO:0000050 UBERON:0008874 ! pulmonary acinus -relationship: BFO:0000050 UBERON:0006524 ! alveolar system -relationship: BFO:0000050 UBERON:0008874 ! pulmonary acinus +intersection_of: BFO:0000050 UBERON:0008874 ! part of pulmonary acinus +relationship: BFO:0000050 UBERON:0006524 ! part of alveolar system +relationship: BFO:0000050 UBERON:0008874 ! part of pulmonary acinus [Term] id: UBERON:0002180 @@ -8656,7 +8658,7 @@ synonym: "ventral funiculus" EXACT [] synonym: "ventral funiculus of spinal cord" EXACT [] synonym: "ventral white column of spinal cord" EXACT [] is_a: UBERON:0006127 ! funiculus of spinal cord -relationship: BFO:0000050 UBERON:0002318 ! white matter of spinal cord +relationship: BFO:0000050 UBERON:0002318 ! part of white matter of spinal cord [Term] id: UBERON:0002185 @@ -8666,7 +8668,7 @@ synonym: "bronchi" EXACT [] synonym: "bronchial tissue" RELATED [] synonym: "bronchial trunk" EXACT [] is_a: UBERON:0000117 ! respiratory tube -relationship: BFO:0000050 UBERON:0007196 ! tracheobronchial tree +relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree [Term] id: UBERON:0002186 @@ -8676,10 +8678,10 @@ synonym: "bronchioli" RELATED [] synonym: "bronchiolus" RELATED [] synonym: "lobular bronchiole" EXACT [] is_a: UBERON:0000117 ! respiratory tube -relationship: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0007196 ! tracheobronchial tree -relationship: BFO:0000050 UBERON:0010368 ! pulmonary lobule +relationship: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree +relationship: BFO:0000050 UBERON:0010368 ! part of pulmonary lobule [Term] id: UBERON:0002187 @@ -8697,7 +8699,7 @@ def: "A bronchiole that is the first segment of the respiratory zone." [] synonym: "bronchiolus respiratorii" EXACT [] synonym: "bronchiolus respiratorius" EXACT [] is_a: UBERON:0002186 ! bronchiole -relationship: BFO:0000050 UBERON:0008874 ! pulmonary acinus +relationship: BFO:0000050 UBERON:0008874 ! part of pulmonary acinus [Term] id: UBERON:0002190 @@ -8714,8 +8716,8 @@ synonym: "subcutaneous fat layer" EXACT [] is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001013 ! adipose tissue -intersection_of: BFO:0000050 UBERON:0002072 ! hypodermis -relationship: BFO:0000050 UBERON:0002072 ! hypodermis +intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis +relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0002191 @@ -8727,7 +8729,7 @@ synonym: "subiculum cornu ammonis" RELATED [] synonym: "subiculum hippocampi" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002421 ! hippocampal formation +relationship: BFO:0000050 UBERON:0002421 ! part of hippocampal formation [Term] id: UBERON:0002193 @@ -8745,8 +8747,8 @@ def: "Capsule surrounding lymph node composed of connective tissue with some pla synonym: "capsula nodi lymphoidei" EXACT [] synonym: "lymph node capsule" EXACT [] is_a: UBERON:0003893 ! capsule -relationship: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0002196 @@ -8773,8 +8775,8 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0002198 ! neurohypophysis -relationship: BFO:0000050 UBERON:0000007 ! pituitary gland -relationship: RO:0002202 UBERON:0009122 ! adenohypophyseal placode +relationship: BFO:0000050 UBERON:0000007 ! part of pituitary gland +relationship: RO:0002202 UBERON:0009122 ! develops_from adenohypophyseal placode [Term] id: UBERON:0002198 @@ -8802,7 +8804,7 @@ synonym: "posterior pituitary" EXACT [] synonym: "posterior pituitary gland" RELATED [] is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 ! secretory circumventricular organ -relationship: BFO:0000050 UBERON:0000007 ! pituitary gland +relationship: BFO:0000050 UBERON:0000007 ! part of pituitary gland [Term] id: UBERON:0002199 @@ -8820,10 +8822,10 @@ synonym: "tegument" RELATED [] synonym: "the integument" EXACT [] synonym: "vertebrate integument" RELATED [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000050 UBERON:0002416 ! integumental system -relationship: BFO:0000051 UBERON:0002072 ! hypodermis -relationship: BFO:0000051 UBERON:0002097 ! skin of body +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000050 UBERON:0002416 ! part of integumental system +relationship: BFO:0000051 UBERON:0002072 ! has part hypodermis +relationship: BFO:0000051 UBERON:0002097 ! has part skin of body [Term] id: UBERON:0002200 @@ -8839,8 +8841,8 @@ synonym: "vascular network of head" EXACT [] synonym: "vasculature of adult head" EXACT [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0002201 @@ -8855,8 +8857,8 @@ synonym: "vascular network of trunk" EXACT [] synonym: "vasculature of torso" EXACT [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0002202 @@ -8870,8 +8872,8 @@ synonym: "windpipe submucosa" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0002203 @@ -8886,9 +8888,9 @@ synonym: "vascular network of eye" EXACT [] is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: RO:0002202 UBERON:0003314 ! eye mesenchyme +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: RO:0002202 UBERON:0003314 ! develops_from eye mesenchyme [Term] id: UBERON:0002204 @@ -8903,8 +8905,8 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000051 UBERON:0000383 ! musculature of body -relationship: BFO:0000051 UBERON:0001434 ! skeletal system +relationship: BFO:0000051 UBERON:0000383 ! has part musculature of body +relationship: BFO:0000051 UBERON:0001434 ! has part skeletal system [Term] id: UBERON:0002209 @@ -8933,8 +8935,8 @@ synonym: "saccule of membranous labyrinth macula" EXACT [] synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [] is_a: UBERON:0000054 ! macula intersection_of: UBERON:0000054 ! macula -intersection_of: BFO:0000050 UBERON:0001854 ! saccule of membranous labyrinth -relationship: BFO:0000050 UBERON:0001854 ! saccule of membranous labyrinth +intersection_of: BFO:0000050 UBERON:0001854 ! part of saccule of membranous labyrinth +relationship: BFO:0000050 UBERON:0001854 ! part of saccule of membranous labyrinth [Term] id: UBERON:0002213 @@ -8943,7 +8945,7 @@ def: "Nonsynovial joint in which the articulating bones or cartilages are connec synonym: "articulatio cartilaginea" EXACT [] synonym: "junctura cartilaginea" RELATED [] is_a: UBERON:0011134 ! nonsynovial joint -relationship: BFO:0000051 UBERON:0002418 ! cartilage tissue +relationship: BFO:0000051 UBERON:0002418 ! has part cartilage tissue [Term] id: UBERON:0002214 @@ -8963,8 +8965,8 @@ synonym: "utricular macula" RELATED [] synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [] is_a: UBERON:0000054 ! macula intersection_of: UBERON:0000054 ! macula -intersection_of: BFO:0000050 UBERON:0001853 ! utricle of membranous labyrinth -relationship: BFO:0000050 UBERON:0001853 ! utricle of membranous labyrinth +intersection_of: BFO:0000050 UBERON:0001853 ! part of utricle of membranous labyrinth +relationship: BFO:0000050 UBERON:0001853 ! part of utricle of membranous labyrinth [Term] id: UBERON:0002216 @@ -9003,7 +9005,7 @@ synonym: "spiral organ of Corti" EXACT [] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001855 ! cochlear duct of membranous labyrinth +relationship: BFO:0000050 UBERON:0001855 ! part of cochlear duct of membranous labyrinth [Term] id: UBERON:0002240 @@ -9021,9 +9023,9 @@ is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: RO:0002202 UBERON:0003076 ! posterior neural tube -relationship: RO:0002202 UBERON:0006241 ! future spinal cord +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: RO:0002202 UBERON:0003076 ! develops_from posterior neural tube +relationship: RO:0002495 UBERON:0006241 ! immediate transformation of future spinal cord [Term] id: UBERON:0002241 @@ -9045,9 +9047,9 @@ synonym: "pulpy nucleus" EXACT [] is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001066 ! intervertebral disk -relationship: BFO:0000051 UBERON:0011860 ! collection of collagen fibrils -relationship: RO:0002202 UBERON:0002328 ! notochord +relationship: BFO:0000050 UBERON:0001066 ! part of intervertebral disk +relationship: BFO:0000051 UBERON:0011860 ! has part collection of collagen fibrils +relationship: RO:0002202 UBERON:0002328 ! develops_from notochord [Term] id: UBERON:0002255 @@ -9060,9 +9062,9 @@ synonym: "organum vomeronasale" EXACT [] synonym: "VNO" RELATED [] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0009954 ! vomeronasal system -relationship: RO:0002202 UBERON:0003050 ! olfactory placode +relationship: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0009954 ! part of vomeronasal system +relationship: RO:0002202 UBERON:0003050 ! develops_from olfactory placode [Term] id: UBERON:0002256 @@ -9091,7 +9093,7 @@ synonym: "spinal cord dorsal horns" RELATED [] synonym: "spinal cord posterior horn" EXACT [] is_a: UBERON:0016550 ! spinal cord column disjoint_from: UBERON:0002257 ! ventral horn of spinal cord -relationship: BFO:0000050 UBERON:0002315 ! gray matter of spinal cord +relationship: BFO:0000050 UBERON:0002315 ! part of gray matter of spinal cord [Term] id: UBERON:0002257 @@ -9118,7 +9120,7 @@ synonym: "ventral horns spinal cord" RELATED [] synonym: "ventral region of spinal cord" EXACT [] synonym: "ventral spinal cord" EXACT [] is_a: UBERON:0016550 ! spinal cord column -relationship: BFO:0000050 UBERON:0002315 ! gray matter of spinal cord +relationship: BFO:0000050 UBERON:0002315 ! part of gray matter of spinal cord [Term] id: UBERON:0002264 @@ -9132,8 +9134,8 @@ synonym: "olfactory lobe (Barr & Kiernan)" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0005366 ! olfactory lobe +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0005366 ! part of olfactory lobe [Term] id: UBERON:0002268 @@ -9157,7 +9159,7 @@ synonym: "periventricular zone of the hypothalamus" RELATED [] synonym: "zona periventricularis hypothalamicae" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001898 ! hypothalamus +relationship: BFO:0000050 UBERON:0001898 ! part of hypothalamus [Term] id: UBERON:0002275 @@ -9168,7 +9170,7 @@ synonym: "brainstem reticular formation" EXACT [] synonym: "reticular formation (classical)" EXACT [] synonym: "reticular formation of the brainstem" EXACT [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0002298 ! brainstem +relationship: BFO:0000050 UBERON:0002298 ! part of brainstem [Term] id: UBERON:0002276 @@ -9182,7 +9184,7 @@ synonym: "spiral limbus lamina" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001855 ! cochlear duct of membranous labyrinth +relationship: BFO:0000050 UBERON:0001855 ! part of cochlear duct of membranous labyrinth [Term] id: UBERON:0002282 @@ -9197,7 +9199,7 @@ synonym: "vascular stripe of cochlear duct" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001855 ! cochlear duct of membranous labyrinth +relationship: BFO:0000050 UBERON:0001855 ! part of cochlear duct of membranous labyrinth [Term] id: UBERON:0002285 @@ -9215,9 +9217,9 @@ synonym: "telencephalon lateral ventricle" EXACT [] is_a: UBERON:0004086 ! brain ventricle is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004086 ! brain ventricle -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: RO:0002202 UBERON:0009676 ! early telencephalic vesicle +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: RO:0002202 UBERON:0009676 ! develops_from early telencephalic vesicle [Term] id: UBERON:0002290 @@ -9233,8 +9235,8 @@ is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0006694 ! cerebellum vasculature is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001886 ! choroid plexus -intersection_of: BFO:0000050 UBERON:0002422 ! fourth ventricle -relationship: BFO:0000050 UBERON:0002422 ! fourth ventricle +intersection_of: BFO:0000050 UBERON:0002422 ! part of fourth ventricle +relationship: BFO:0000050 UBERON:0002422 ! part of fourth ventricle [Term] id: UBERON:0002294 @@ -9249,8 +9251,8 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000050 UBERON:0002423 ! hepatobiliary system -relationship: BFO:0000051 UBERON:0001173 ! biliary tree +relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system +relationship: BFO:0000051 UBERON:0001173 ! has part biliary tree [Term] id: UBERON:0002296 @@ -9260,7 +9262,7 @@ synonym: "dorsal mesogastrium" RELATED [] synonym: "mesenterium dorsale commune" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0009664 ! gut mesentery +relationship: BFO:0000050 UBERON:0009664 ! part of gut mesentery [Term] id: UBERON:0002298 @@ -9277,8 +9279,8 @@ synonym: "truncus encephalicus" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000051 UBERON:0001896 ! medulla oblongata -relationship: BFO:0000051 UBERON:0001943 ! midbrain tegmentum +relationship: BFO:0000051 UBERON:0001896 ! has part medulla oblongata +relationship: BFO:0000051 UBERON:0001943 ! has part midbrain tegmentum [Term] id: UBERON:0002299 @@ -9295,9 +9297,9 @@ synonym: "respiratory alveolus" EXACT [] is_a: UBERON:0003215 ! alveolus is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003215 ! alveolus -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002169 ! alveolar sac -relationship: BFO:0000050 UBERON:0006524 ! alveolar system +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002169 ! part of alveolar sac +relationship: BFO:0000050 UBERON:0006524 ! part of alveolar system [Term] id: UBERON:0002301 @@ -9311,8 +9313,8 @@ synonym: "neocortex layer" EXACT [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer -intersection_of: BFO:0000050 UBERON:0001950 ! neocortex -relationship: BFO:0000050 UBERON:0001950 ! neocortex +intersection_of: BFO:0000050 UBERON:0001950 ! part of neocortex +relationship: BFO:0000050 UBERON:0001950 ! part of neocortex [Term] id: UBERON:0002302 @@ -9323,8 +9325,8 @@ synonym: "atrium cardiac muscle" RELATED [] synonym: "atrium myocardium" EXACT [] is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium -intersection_of: BFO:0000050 UBERON:0002081 ! cardiac atrium -relationship: BFO:0000050 UBERON:0002081 ! cardiac atrium +intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium +relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium [Term] id: UBERON:0002303 @@ -9333,8 +9335,8 @@ def: "An anatomical structure which consists of juxtaglomerular cells, extraglom synonym: "complexus juxtaglomerularis" EXACT [] synonym: "juxtaglomerular complex" EXACT [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000051 UBERON:0002335 ! macula densa +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000051 UBERON:0002335 ! has part macula densa [Term] id: UBERON:0002304 @@ -9345,8 +9347,8 @@ synonym: "dentate gyrus layer" EXACT [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer -intersection_of: BFO:0000050 UBERON:0001885 ! dentate gyrus of hippocampal formation -relationship: BFO:0000050 UBERON:0001885 ! dentate gyrus of hippocampal formation +intersection_of: BFO:0000050 UBERON:0001885 ! part of dentate gyrus of hippocampal formation +relationship: BFO:0000050 UBERON:0001885 ! part of dentate gyrus of hippocampal formation [Term] id: UBERON:0002305 @@ -9359,8 +9361,8 @@ synonym: "layer of cornu ammonis" RELATED [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 ! central nervous system gray matter layer intersection_of: UBERON:0016548 ! central nervous system gray matter layer -intersection_of: BFO:0000050 UBERON:0002421 ! hippocampal formation -relationship: BFO:0000050 UBERON:0002421 ! hippocampal formation +intersection_of: BFO:0000050 UBERON:0002421 ! part of hippocampal formation +relationship: BFO:0000050 UBERON:0002421 ! part of hippocampal formation [Term] id: UBERON:0002307 @@ -9374,8 +9376,8 @@ synonym: "lateral ventricle choroid plexus" EXACT [] is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001886 ! choroid plexus -intersection_of: BFO:0000050 UBERON:0002285 ! telencephalic ventricle -relationship: BFO:0000050 UBERON:0002285 ! telencephalic ventricle +intersection_of: BFO:0000050 UBERON:0002285 ! part of telencephalic ventricle +relationship: BFO:0000050 UBERON:0002285 ! part of telencephalic ventricle [Term] id: UBERON:0002308 @@ -9385,8 +9387,8 @@ synonym: "brain nuclei" RELATED [] synonym: "brain nucleus" EXACT [] is_a: UBERON:0000125 ! neural nucleus intersection_of: UBERON:0000125 ! neural nucleus -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0003528 ! brain gray matter +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0003528 ! part of brain gray matter [Term] id: UBERON:0002313 @@ -9418,8 +9420,8 @@ synonym: "spinal cord grey substance" EXACT [] synonym: "substantia grisea medullae spinalis" EXACT [] is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0002316 @@ -9434,7 +9436,7 @@ synonym: "white mater" RELATED [] synonym: "white matter of neuraxis" EXACT [] synonym: "white substance" EXACT [] is_a: UBERON:0011215 ! central nervous system cell part cluster -relationship: BFO:0000051 UBERON:0006135 ! myelinated nerve fiber +relationship: BFO:0000051 UBERON:0006135 ! has part myelinated nerve fiber [Term] id: UBERON:0002318 @@ -9448,8 +9450,8 @@ synonym: "white matter of neuraxis of spinal cord" EXACT [] synonym: "white substance of spinal cord" EXACT [] is_a: UBERON:0002316 ! white matter intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0002319 @@ -9457,8 +9459,8 @@ name: mesangium def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [] is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0000074 ! renal glomerulus -relationship: BFO:0000050 UBERON:0005215 ! kidney interstitium +relationship: BFO:0000050 UBERON:0000074 ! part of renal glomerulus +relationship: BFO:0000050 UBERON:0005215 ! part of kidney interstitium [Term] id: UBERON:0002320 @@ -9466,8 +9468,8 @@ name: glomerular mesangium def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0002319 ! mesangium -relationship: BFO:0000050 UBERON:0004190 ! renal glomerulus vasculature +relationship: BFO:0000050 UBERON:0002319 ! part of mesangium +relationship: BFO:0000050 UBERON:0004190 ! part of renal glomerulus vasculature [Term] id: UBERON:0002321 @@ -9475,9 +9477,9 @@ name: extraglomerular mesangium def: "the tissue comprised of mesangial cells that fill the triangular space between the macula densa and the afferent and efferent arterioles of the juxtaglomerular apparatus" [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001229 ! renal corpuscle -relationship: BFO:0000050 UBERON:0002303 ! juxtaglomerular apparatus -relationship: BFO:0000050 UBERON:0002319 ! mesangium +relationship: BFO:0000050 UBERON:0001229 ! part of renal corpuscle +relationship: BFO:0000050 UBERON:0002303 ! part of juxtaglomerular apparatus +relationship: BFO:0000050 UBERON:0002319 ! part of mesangium [Term] id: UBERON:0002323 @@ -9494,8 +9496,8 @@ synonym: "main body cavity" EXACT [] synonym: "space of body compartment" EXACT [] synonym: "ventral body cavity" NARROW [] is_a: UBERON:0002553 ! anatomical cavity -relationship: BFO:0000050 UBERON:0011997 ! coelom -relationship: RO:0002202 UBERON:0003886 ! future coelemic cavity lumen +relationship: BFO:0000050 UBERON:0011997 ! part of coelom +relationship: RO:0002202 UBERON:0003886 ! develops_from future coelemic cavity lumen [Term] id: UBERON:0002324 @@ -9507,8 +9509,8 @@ synonym: "muscle organ of back" EXACT [] is_a: UBERON:0001774 ! skeletal muscle of trunk is_a: UBERON:0005174 ! dorsal region element intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0004469 ! musculature of back +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0004469 ! part of musculature of back [Term] id: UBERON:0002325 @@ -9526,8 +9528,8 @@ is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006555 ! excretory tube is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0002326 @@ -9542,8 +9544,8 @@ synonym: "urethral lamina propria" RELATED [] is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0002328 @@ -9555,9 +9557,9 @@ synonym: "notocord" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0011137 ! axial skeletal system -relationship: RO:0002202 UBERON:0004880 ! chordamesoderm -relationship: RO:0002202 UBERON:0006267 ! notochordal plate +relationship: BFO:0000050 UBERON:0011137 ! part of axial skeletal system +relationship: RO:0002202 UBERON:0004880 ! develops_from chordamesoderm +relationship: RO:0002202 UBERON:0006267 ! develops_from notochordal plate [Term] id: UBERON:0002329 @@ -9572,7 +9574,7 @@ synonym: "somitic mesoderm" RELATED [] synonym: "somitus" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007503 ! epithelial vesicle -relationship: RO:0002202 UBERON:0003059 ! presomitic mesoderm +relationship: RO:0002202 UBERON:0003059 ! develops_from presomitic mesoderm [Term] id: UBERON:0002330 @@ -9585,7 +9587,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000051 UBERON:0002365 ! exocrine gland +relationship: BFO:0000051 UBERON:0002365 ! has part exocrine gland [Term] id: UBERON:0002331 @@ -9598,15 +9600,15 @@ synonym: "funiculus umbilicalis" EXACT [] synonym: "funiculus umbilicalis" RELATED [] synonym: "yolk stalk" RELATED [] is_a: UBERON:0000478 ! extraembryonic structure -relationship: RO:0002202 UBERON:0007806 ! connecting stalk +relationship: RO:0002202 UBERON:0007806 ! develops_from connecting stalk [Term] id: UBERON:0002335 name: macula densa def: "The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO]." [] is_a: UBERON:0004211 ! nephron epithelium -relationship: BFO:0000050 UBERON:0002303 ! juxtaglomerular apparatus -relationship: BFO:0000050 UBERON:0004135 ! distal tubule +relationship: BFO:0000050 UBERON:0002303 ! part of juxtaglomerular apparatus +relationship: BFO:0000050 UBERON:0004135 ! part of distal tubule [Term] id: UBERON:0002337 @@ -9617,8 +9619,8 @@ synonym: "stroma of endometrium" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0001295 ! endometrium -relationship: BFO:0000050 UBERON:0001295 ! endometrium +intersection_of: BFO:0000050 UBERON:0001295 ! part of endometrium +relationship: BFO:0000050 UBERON:0001295 ! part of endometrium [Term] id: UBERON:0002338 @@ -9645,8 +9647,8 @@ synonym: "lamina propria of bronchial trunk" EXACT [] is_a: UBERON:0000031 ! lamina propria of trachea is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0000410 ! bronchial mucosa +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0000410 ! part of bronchial mucosa [Term] id: UBERON:0002342 @@ -9658,9 +9660,9 @@ synonym: "neural crest material" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010316 ! germ layer / neural crest -relationship: BFO:0000050 UBERON:0002346 ! neurectoderm -relationship: RO:0002202 UBERON:0003075 ! neural plate -relationship: RO:0002202 UBERON:0005062 ! neural fold +relationship: BFO:0000050 UBERON:0002346 ! part of neurectoderm +relationship: RO:0002202 UBERON:0003075 ! develops_from neural plate +relationship: RO:0002202 UBERON:0005062 ! develops_from neural fold [Term] id: UBERON:0002343 @@ -9674,8 +9676,8 @@ synonym: "musculature of abdominal wall" EXACT [] synonym: "set of muscles of abdomen" EXACT [] is_a: UBERON:0004479 ! musculature of trunk intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0002346 @@ -9689,7 +9691,7 @@ synonym: "presumptive central nervous system" RELATED [] synonym: "ventral neurogenic region" RELATED [] is_a: UBERON:0000923 ! germ layer is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: RO:0002202 UBERON:0000924 ! ectoderm +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0002348 @@ -9701,9 +9703,9 @@ synonym: "visceral serous pericardium of heart" EXACT [] synonym: "visceral serous pericardium proper" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0002425 ! visceral serous pericardium -relationship: RO:0002202 UBERON:0004160 ! proepicardium +relationship: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0002425 ! part of visceral serous pericardium +relationship: RO:0002202 UBERON:0004160 ! develops_from proepicardium [Term] id: UBERON:0002349 @@ -9716,9 +9718,9 @@ synonym: "muscle of heart" EXACT [] is_a: UBERON:0005983 ! heart layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0018260 ! layer of muscle tissue -relationship: BFO:0000050 UBERON:0000383 ! musculature of body -relationship: BFO:0000051 UBERON:0001133 ! cardiac muscle tissue -relationship: BFO:0000051 UBERON:0002350 ! conducting system of heart +relationship: BFO:0000050 UBERON:0000383 ! part of musculature of body +relationship: BFO:0000051 UBERON:0001133 ! has part cardiac muscle tissue +relationship: BFO:0000051 UBERON:0002350 ! has part conducting system of heart [Term] id: UBERON:0002350 @@ -9735,7 +9737,7 @@ synonym: "impulse conducting system" EXACT [] synonym: "systema conducente cordis" EXACT [] is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart -relationship: BFO:0000050 UBERON:0002349 ! myocardium +relationship: BFO:0000050 UBERON:0002349 ! part of myocardium [Term] id: UBERON:0002351 @@ -9756,7 +9758,7 @@ synonym: "sinus node" EXACT [] synonym: "sinus node of Keith and Flack" EXACT [] is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart -relationship: BFO:0000050 UBERON:0002350 ! conducting system of heart +relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart [Term] id: UBERON:0002352 @@ -9776,7 +9778,7 @@ synonym: "nodus atrioventricularis" RELATED [] is_a: UBERON:0004491 ! cardiac muscle tissue of interatrial septum is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart -relationship: BFO:0000050 UBERON:0002350 ! conducting system of heart +relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart [Term] id: UBERON:0002353 @@ -9792,7 +9794,7 @@ synonym: "fasciculus atrioventricularis" EXACT [] synonym: "His bundle" EXACT [] is_a: UBERON:0010131 ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle -relationship: BFO:0000050 UBERON:0004146 ! His-Purkinje system +relationship: BFO:0000050 UBERON:0004146 ! part of His-Purkinje system [Term] id: UBERON:0002355 @@ -9804,8 +9806,8 @@ synonym: "pelvis" EXACT [] synonym: "pelvis region" EXACT [] synonym: "true pelvis" EXACT [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk -relationship: BFO:0000051 UBERON:0007832 ! pelvic girdle skeleton +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk +relationship: BFO:0000051 UBERON:0007832 ! has part pelvic girdle skeleton [Term] id: UBERON:0002357 @@ -9814,9 +9816,9 @@ def: "Serous membrane which is divided into parietal and visceral serous pericar synonym: "pericardium serosum" RELATED [] synonym: "serous portion of pericardium" EXACT [] is_a: UBERON:0000042 ! serous membrane -relationship: BFO:0000050 UBERON:0002406 ! pericardial sac -relationship: BFO:0000051 UBERON:0002408 ! parietal serous pericardium -relationship: BFO:0000051 UBERON:0002425 ! visceral serous pericardium +relationship: BFO:0000050 UBERON:0002406 ! part of pericardial sac +relationship: BFO:0000051 UBERON:0002408 ! has part parietal serous pericardium +relationship: BFO:0000051 UBERON:0002425 ! has part visceral serous pericardium [Term] id: UBERON:0002358 @@ -9825,9 +9827,9 @@ def: "A serous membrane that lines the peritoneal cavity[VHOG,modified]." [] synonym: "peritonaeum" RELATED [] is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0035820 ! peritoneal sac -relationship: BFO:0000050 UBERON:0003697 ! abdominal wall -relationship: BFO:0000050 UBERON:0035820 ! peritoneal sac +intersection_of: BFO:0000050 UBERON:0035820 ! part of peritoneal sac +relationship: BFO:0000050 UBERON:0003697 ! part of abdominal wall +relationship: BFO:0000050 UBERON:0035820 ! part of peritoneal sac [Term] id: UBERON:0002359 @@ -9837,8 +9839,8 @@ synonym: "fibrous portion of pericardium" EXACT [] synonym: "pericardium fibrosum" RELATED [] is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0005181 ! thoracic segment organ -relationship: BFO:0000050 UBERON:0002407 ! pericardium -relationship: BFO:0000051 UBERON:0006815 ! areolar connective tissue +relationship: BFO:0000050 UBERON:0002407 ! part of pericardium +relationship: BFO:0000051 UBERON:0006815 ! has part areolar connective tissue [Term] id: UBERON:0002360 @@ -9850,8 +9852,8 @@ synonym: "meninx primitiva" NARROW [] is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0010743 ! meningeal cluster -relationship: RO:0002202 UBERON:0007645 ! future meninx +relationship: BFO:0000050 UBERON:0010743 ! part of meningeal cluster +relationship: RO:0002495 UBERON:0007645 ! immediate transformation of future meninx [Term] id: UBERON:0002363 @@ -9861,7 +9863,7 @@ synonym: "dura" RELATED [] synonym: "dura mater of neuraxis" EXACT [] synonym: "pachymeninges" EXACT [] is_a: UBERON:0002360 ! meninx -relationship: RO:0002202 UBERON:0007647 ! ectomeninx +relationship: RO:0002495 UBERON:0007647 ! immediate transformation of ectomeninx [Term] id: UBERON:0002364 @@ -9877,11 +9879,11 @@ synonym: "Rivinus' membrane" EXACT [] synonym: "tympanum" RELATED [] is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001756 ! middle ear -relationship: BFO:0000051 UBERON:0005042 ! inner epithelial layer of tympanic membrane -relationship: BFO:0000051 UBERON:0010069 ! outer epithelial layer of tympanic membrane -relationship: BFO:0000051 UBERON:0010070 ! intermediate layer of tympanic membrane -relationship: RO:0002202 UBERON:0009213 ! pharyngeal membrane of 1st arch +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: BFO:0000051 UBERON:0005042 ! has part inner epithelial layer of tympanic membrane +relationship: BFO:0000051 UBERON:0010069 ! has part outer epithelial layer of tympanic membrane +relationship: BFO:0000051 UBERON:0010070 ! has part intermediate layer of tympanic membrane +relationship: RO:0002202 UBERON:0009213 ! develops_from pharyngeal membrane of 1st arch [Term] id: UBERON:0002365 @@ -9891,9 +9893,9 @@ synonym: "ducted gland" EXACT [] synonym: "glandula exocrina" EXACT [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0002330 ! exocrine system -relationship: BFO:0000050 UBERON:0002330 ! exocrine system -relationship: BFO:0000051 UBERON:0000058 ! duct +intersection_of: BFO:0000050 UBERON:0002330 ! part of exocrine system +relationship: BFO:0000050 UBERON:0002330 ! part of exocrine system +relationship: BFO:0000051 UBERON:0000058 ! has part duct [Term] id: UBERON:0002367 @@ -9904,7 +9906,7 @@ synonym: "prostata" RELATED [] synonym: "prostate" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland -relationship: RO:0002202 UBERON:0003820 ! prostate bud +relationship: RO:0002202 UBERON:0003820 ! develops_from prostate bud [Term] id: UBERON:0002368 @@ -9916,8 +9918,8 @@ synonym: "glandula endocrina" EXACT [] synonym: "glandulae endocrinae" RELATED [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: BFO:0000050 UBERON:0000949 ! endocrine system +intersection_of: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system [Term] id: UBERON:0002369 @@ -9938,7 +9940,7 @@ synonym: "suprarenal gland" RELATED [] is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006858 ! adrenal/interrenal gland is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000949 ! endocrine system +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system [Term] id: UBERON:0002370 @@ -9951,13 +9953,13 @@ is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0005058 ! hemolymphoid system gland -relationship: BFO:0000050 UBERON:0000153 ! anterior region of body -relationship: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: BFO:0000050 UBERON:0002390 ! hematopoietic system -relationship: BFO:0000050 UBERON:0002405 ! immune system -relationship: BFO:0000051 UBERON:0003483 ! thymus lymphoid tissue -relationship: BFO:0000051 UBERON:0003846 ! thymus epithelium -relationship: RO:0002202 UBERON:0005562 ! thymus primordium +relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system +relationship: BFO:0000050 UBERON:0002405 ! part of immune system +relationship: BFO:0000051 UBERON:0003483 ! has part thymus lymphoid tissue +relationship: BFO:0000051 UBERON:0003846 ! has part thymus epithelium +relationship: RO:0002202 UBERON:0005562 ! develops_from thymus primordium [Term] id: UBERON:0002371 @@ -9970,12 +9972,12 @@ synonym: "medullary bone" RELATED [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000479 ! tissue -intersection_of: BFO:0000050 UBERON:0001474 ! bone element -intersection_of: BFO:0000051 UBERON:0012429 ! hematopoietic tissue -relationship: BFO:0000050 UBERON:0001474 ! bone element -relationship: BFO:0000050 UBERON:0002390 ! hematopoietic system -relationship: BFO:0000050 UBERON:0002405 ! immune system -relationship: BFO:0000051 UBERON:0012429 ! hematopoietic tissue +intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element +intersection_of: BFO:0000051 UBERON:0012429 ! has part hematopoietic tissue +relationship: BFO:0000050 UBERON:0001474 ! part of bone element +relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system +relationship: BFO:0000050 UBERON:0002405 ! part of immune system +relationship: BFO:0000051 UBERON:0012429 ! has part hematopoietic tissue [Term] id: UBERON:0002372 @@ -9984,7 +9986,7 @@ def: "either of the two small almond-shaped masses of lymph tissue found on eith synonym: "Mandel" RELATED [] is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue is_a: UBERON:0001962 ! gut-associated lymphoid tissue -relationship: BFO:0000050 UBERON:0001735 ! tonsillar ring +relationship: BFO:0000050 UBERON:0001735 ! part of tonsillar ring [Term] id: UBERON:0002376 @@ -10003,8 +10005,8 @@ synonym: "muscle organ of head" EXACT [] synonym: "musculus caput" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010959 ! craniocervical muscle -relationship: BFO:0000050 UBERON:0004461 ! musculature of head -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0004461 ! part of musculature of head +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0002378 @@ -10019,9 +10021,9 @@ synonym: "muscle organ of abdomen" EXACT [] is_a: UBERON:0003833 ! abdominal segment muscle is_a: UBERON:0005172 ! abdomen element intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0002343 ! abdomen musculature -relationship: BFO:0000050 UBERON:0003697 ! abdominal wall +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0002343 ! part of abdomen musculature +relationship: BFO:0000050 UBERON:0003697 ! part of abdominal wall [Term] id: UBERON:0002381 @@ -10053,7 +10055,7 @@ synonym: "textus muscularis" EXACT [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0003714 ! neural tissue -relationship: BFO:0000050 UBERON:0001015 ! musculature +relationship: BFO:0000050 UBERON:0001015 ! part of musculature [Term] id: UBERON:0002387 @@ -10076,9 +10078,9 @@ synonym: "terminal segment of free lower limb" EXACT [] is_a: UBERON:0002470 ! autopod region is_a: UBERON:0008784 ! lower limb segment intersection_of: UBERON:0002470 ! autopod region -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000051 UBERON:0001445 ! skeleton of pes -relationship: RO:0002202 UBERON:0006871 ! embryonic footplate +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000051 UBERON:0001445 ! has part skeleton of pes +relationship: RO:0002202 UBERON:0006871 ! develops_from embryonic footplate [Term] id: UBERON:0002389 @@ -10094,9 +10096,9 @@ synonym: "hand digit" EXACT [] synonym: "manual digit (phalangeal portion) plus soft tissue" EXACT [] is_a: UBERON:0002544 ! digit intersection_of: UBERON:0002544 ! digit -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0012141 ! manual digitopodium region -relationship: BFO:0000050 UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0012141 ! part of manual digitopodium region +relationship: BFO:0000050 UBERON:5002389 ! part of manual digit plus metapodial segment [Term] id: UBERON:0002390 @@ -10116,8 +10118,8 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000050 UBERON:0002193 ! hemolymphoid system -relationship: RO:0002202 UBERON:0003061 ! blood island +relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system +relationship: RO:0002202 UBERON:0003061 ! develops_from blood island [Term] id: UBERON:0002391 @@ -10125,8 +10127,8 @@ name: lymph def: "Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]." [] synonym: "lympha" RELATED [] is_a: UBERON:0000179 ! haemolymphatic fluid -relationship: BFO:0000050 UBERON:0006558 ! lymphatic part of lymphoid system -relationship: RO:0002202 UBERON:0000913 ! interstitial fluid +relationship: BFO:0000050 UBERON:0006558 ! part of lymphatic part of lymphoid system +relationship: RO:0002202 UBERON:0000913 ! develops_from interstitial fluid [Term] id: UBERON:0002392 @@ -10138,9 +10140,9 @@ synonym: "tear duct" RELATED [] is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001850 ! lacrimal drainage system -relationship: BFO:0000051 UBERON:0007602 ! stratified columnar epithelium -relationship: RO:0002202 UBERON:0006266 ! nasolacrimal groove +relationship: BFO:0000050 UBERON:0001850 ! part of lacrimal drainage system +relationship: BFO:0000051 UBERON:0007602 ! has part stratified columnar epithelium +relationship: RO:0002202 UBERON:0006266 ! develops_from nasolacrimal groove [Term] id: UBERON:0002394 @@ -10153,9 +10155,9 @@ synonym: "hepatic duct" RELATED [] is_a: UBERON:0003928 ! digestive system duct is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0001173 ! biliary tree -relationship: BFO:0000050 UBERON:0001173 ! biliary tree -relationship: RO:0002202 UBERON:0008835 ! hepatic diverticulum +intersection_of: BFO:0000050 UBERON:0001173 ! part of biliary tree +relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree +relationship: RO:0002202 UBERON:0008835 ! develops_from hepatic diverticulum [Term] id: UBERON:0002398 @@ -10176,9 +10178,9 @@ synonym: "terminal segment of free upper limb" EXACT [] is_a: UBERON:0002470 ! autopod region is_a: UBERON:0008785 ! upper limb segment intersection_of: UBERON:0002470 ! autopod region -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000051 UBERON:0001442 ! skeleton of manus -relationship: RO:0002202 UBERON:0006875 ! embryonic handplate +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000051 UBERON:0001442 ! has part skeleton of manus +relationship: RO:0002202 UBERON:0006875 ! develops_from embryonic handplate [Term] id: UBERON:0002400 @@ -10187,7 +10189,7 @@ def: "The outer serous membrane of the pulmonary pleural." [] synonym: "pleura parietalis" RELATED [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0000977 ! pleura +relationship: BFO:0000050 UBERON:0000977 ! part of pleura [Term] id: UBERON:0002401 @@ -10202,8 +10204,8 @@ synonym: "pulmonary pleura" RELATED [] synonym: "pulmonary visceral pleura" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0022350 ! visceral serous membrane -relationship: BFO:0000050 UBERON:0000977 ! pleura -relationship: BFO:0000050 UBERON:0002048 ! lung +relationship: BFO:0000050 UBERON:0000977 ! part of pleura +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0002402 @@ -10213,8 +10215,8 @@ synonym: "cavitas pleuralis" EXACT [] synonym: "cavitum pleuralae" RELATED [] synonym: "cavitum pleurale" RELATED [] is_a: UBERON:0035809 ! serous cavity -relationship: BFO:0000050 UBERON:0009778 ! pleural sac -relationship: RO:0002202 UBERON:0003887 ! intraembryonic coelom +relationship: BFO:0000050 UBERON:0009778 ! part of pleural sac +relationship: RO:0002202 UBERON:0003887 ! develops_from intraembryonic coelom [Term] id: UBERON:0002405 @@ -10233,20 +10235,20 @@ synonym: "pericardium" RELATED [] is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005906 ! serous sac intersection_of: UBERON:0005906 ! serous sac -intersection_of: BFO:0000051 UBERON:0001074 ! pericardial cavity -intersection_of: BFO:0000051 UBERON:0002357 ! serous pericardium -relationship: BFO:0000050 UBERON:0002407 ! pericardium -relationship: BFO:0000051 UBERON:0001074 ! pericardial cavity -relationship: BFO:0000051 UBERON:0002357 ! serous pericardium +intersection_of: BFO:0000051 UBERON:0001074 ! has part pericardial cavity +intersection_of: BFO:0000051 UBERON:0002357 ! has part serous pericardium +relationship: BFO:0000050 UBERON:0002407 ! part of pericardium +relationship: BFO:0000051 UBERON:0001074 ! has part pericardial cavity +relationship: BFO:0000051 UBERON:0002357 ! has part serous pericardium [Term] id: UBERON:0002407 name: pericardium def: "The combination of pericardial sac (a double-walled sac containing the heart and the roots of the great vessels) plus fibrous pericardium." [] is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0015410 ! heart plus pericardium -relationship: BFO:0000051 UBERON:0002359 ! fibrous pericardium -relationship: BFO:0000051 UBERON:0002406 ! pericardial sac +relationship: BFO:0000050 UBERON:0015410 ! part of heart plus pericardium +relationship: BFO:0000051 UBERON:0002359 ! has part fibrous pericardium +relationship: BFO:0000051 UBERON:0002406 ! has part pericardial sac [Term] id: UBERON:0002408 @@ -10259,8 +10261,8 @@ synonym: "parietal pericardium" EXACT [] synonym: "pericardial sac" RELATED [] is_a: UBERON:0022351 ! parietal serous membrane intersection_of: UBERON:0022351 ! parietal serous membrane -intersection_of: BFO:0000050 UBERON:0002357 ! serous pericardium -relationship: BFO:0000050 UBERON:0002357 ! serous pericardium +intersection_of: BFO:0000050 UBERON:0002357 ! part of serous pericardium +relationship: BFO:0000050 UBERON:0002357 ! part of serous pericardium [Term] id: UBERON:0002410 @@ -10275,7 +10277,7 @@ synonym: "pars autonomica systematis nervosi peripherici" EXACT [] synonym: "peripheral autonomic nervous system" EXACT [] synonym: "visceral nervous system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0000010 ! peripheral nervous system +relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0002412 @@ -10286,7 +10288,7 @@ synonym: "vertebrae" EXACT [] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0010913 ! vertebral element -relationship: RO:0002202 UBERON:0011094 ! vertebra cartilage element +relationship: RO:0002202 UBERON:0011094 ! develops_from vertebra cartilage element [Term] id: UBERON:0002416 @@ -10302,8 +10304,8 @@ synonym: "surface" RELATED [] is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: BFO:0000051 UBERON:0007376 ! outer epithelium +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: BFO:0000051 UBERON:0007376 ! has part outer epithelium [Term] id: UBERON:0002417 @@ -10341,8 +10343,8 @@ is_a: UBERON:0003297 ! gland of integumental system is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006003 ! integumentary adnexa intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0002097 ! skin of body -relationship: BFO:0000050 UBERON:0002097 ! skin of body +intersection_of: BFO:0000050 UBERON:0002097 ! part of skin of body +relationship: BFO:0000050 UBERON:0002097 ! part of skin of body [Term] id: UBERON:0002420 @@ -10354,7 +10356,7 @@ synonym: "basal nucleus" RELATED [] synonym: "nuclei basales" RELATED [] is_a: UBERON:0003528 ! brain gray matter is_a: UBERON:0007245 ! nuclear complex of neuraxis -relationship: BFO:0000050 UBERON:0010011 ! collection of basal ganglia +relationship: BFO:0000050 UBERON:0010011 ! part of collection of basal ganglia [Term] id: UBERON:0002421 @@ -10369,8 +10371,8 @@ synonym: "primal cortex" RELATED [] synonym: "seahorse" RELATED [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000203 ! pallium -relationship: BFO:0000050 UBERON:0000956 ! cerebral cortex +relationship: BFO:0000050 UBERON:0000203 ! part of pallium +relationship: BFO:0000050 UBERON:0000956 ! part of cerebral cortex [Term] id: UBERON:0002422 @@ -10389,9 +10391,9 @@ synonym: "ventriculus quartus" RELATED [] is_a: UBERON:0004086 ! brain ventricle is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004086 ! brain ventricle -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: RO:0002202 UBERON:0013149 ! hindbrain vesicle +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: RO:0002202 UBERON:0013149 ! develops_from hindbrain vesicle [Term] id: UBERON:0002423 @@ -10402,9 +10404,9 @@ synonym: "liver and biliary system" EXACT [] synonym: "liver/biliary system" RELATED [] is_a: UBERON:0011216 ! organ system subdivision disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: BFO:0000050 UBERON:0001007 ! digestive system -relationship: BFO:0000051 UBERON:0002107 ! liver -relationship: BFO:0000051 UBERON:0002294 ! biliary system +relationship: BFO:0000050 UBERON:0001007 ! part of digestive system +relationship: BFO:0000051 UBERON:0002107 ! has part liver +relationship: BFO:0000051 UBERON:0002294 ! has part biliary system [Term] id: UBERON:0002424 @@ -10415,8 +10417,8 @@ synonym: "epithelium of oral mucosa" EXACT [] is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0003729 ! mouth mucosa -relationship: BFO:0000050 UBERON:0003729 ! mouth mucosa +intersection_of: BFO:0000050 UBERON:0003729 ! part of mouth mucosa +relationship: BFO:0000050 UBERON:0003729 ! part of mouth mucosa [Term] id: UBERON:0002425 @@ -10431,9 +10433,9 @@ synonym: "visceral layer of serous pericardium" EXACT [] synonym: "visceral pericardium" EXACT [] is_a: UBERON:0022350 ! visceral serous membrane intersection_of: UBERON:0022350 ! visceral serous membrane -intersection_of: BFO:0000050 UBERON:0002357 ! serous pericardium -relationship: BFO:0000050 UBERON:0002357 ! serous pericardium -relationship: BFO:0000051 UBERON:0002348 ! epicardium +intersection_of: BFO:0000050 UBERON:0002357 ! part of serous pericardium +relationship: BFO:0000050 UBERON:0002357 ! part of serous pericardium +relationship: BFO:0000051 UBERON:0002348 ! has part epicardium [Term] id: UBERON:0002426 @@ -10453,7 +10455,7 @@ synonym: "thoracic muscle" EXACT [] is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0005175 ! chest organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0002427 @@ -10463,8 +10465,8 @@ synonym: "brachial region skin" RELATED [] synonym: "skin of arm" EXACT [] is_a: UBERON:0003531 ! forelimb skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0001460 ! arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0001460 ! part of arm [Term] id: UBERON:0002428 @@ -10477,8 +10479,8 @@ is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: RO:0002202 UBERON:0010881 ! limb cartilage element +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: RO:0002202 UBERON:0010881 ! develops_from limb cartilage element [Term] id: UBERON:0002435 @@ -10495,10 +10497,10 @@ synonym: "striated nucleus" RELATED [] synonym: "striatum" EXACT [] synonym: "striatum of neuraxis" EXACT [] is_a: UBERON:0011300 ! gray matter of telencephalon -relationship: BFO:0000050 UBERON:0000204 ! ventral part of telencephalon -relationship: BFO:0000050 UBERON:0000369 ! corpus striatum -relationship: BFO:0000050 UBERON:0002420 ! basal ganglion -relationship: BFO:0000050 UBERON:0006098 ! basal nuclear complex +relationship: BFO:0000050 UBERON:0000204 ! part of ventral part of telencephalon +relationship: BFO:0000050 UBERON:0000369 ! part of corpus striatum +relationship: BFO:0000050 UBERON:0002420 ! part of basal ganglion +relationship: BFO:0000050 UBERON:0006098 ! part of basal nuclear complex [Term] id: UBERON:0002437 @@ -10512,8 +10514,8 @@ synonym: "substantia medullaris cerebri" RELATED [] synonym: "white matter structure of cerebral hemisphere" EXACT [] is_a: UBERON:0011299 ! white matter of telencephalon intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001869 ! cerebral hemisphere -relationship: BFO:0000050 UBERON:0001869 ! cerebral hemisphere +intersection_of: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere +relationship: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere [Term] id: UBERON:0002443 @@ -10534,8 +10536,8 @@ synonym: "vasa sanguinea choroideae" EXACT [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001776 ! optic choroid -relationship: BFO:0000050 UBERON:0001776 ! optic choroid +intersection_of: BFO:0000050 UBERON:0001776 ! part of optic choroid +relationship: BFO:0000050 UBERON:0001776 ! part of optic choroid [Term] id: UBERON:0002450 @@ -10552,8 +10554,8 @@ synonym: "maternal placenta" RELATED [] synonym: "placenta maternal decidual layer" RELATED [] synonym: "uterine decidua" RELATED [] is_a: UBERON:0000478 ! extraembryonic structure -relationship: BFO:0000050 UBERON:0001987 ! placenta -relationship: RO:0002202 UBERON:0000459 ! uterine wall +relationship: BFO:0000050 UBERON:0001987 ! part of placenta +relationship: RO:0002202 UBERON:0000459 ! develops_from uterine wall [Term] id: UBERON:0002451 @@ -10570,8 +10572,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001295 ! endometrium -relationship: BFO:0000050 UBERON:0012276 ! endometrium glandular epithelium +intersection_of: BFO:0000050 UBERON:0001295 ! part of endometrium +relationship: BFO:0000050 UBERON:0012276 ! part of endometrium glandular epithelium [Term] id: UBERON:0002456 @@ -10583,7 +10585,7 @@ synonym: "internal mammary artery" EXACT [] synonym: "internal thoracic mammary artery" EXACT [] synonym: "mammary artery" RELATED [] is_a: UBERON:0004573 ! systemic artery -relationship: BFO:0000050 UBERON:0001533 ! subclavian artery +relationship: BFO:0000050 UBERON:0001533 ! part of subclavian artery [Term] id: UBERON:0002457 @@ -10603,8 +10605,8 @@ synonym: "lymphatic drainage system" RELATED [] synonym: "lymphatic system" NARROW [] synonym: "systema lymphoideum" RELATED [] is_a: UBERON:0000467 ! anatomical system -relationship: BFO:0000050 UBERON:0002193 ! hemolymphoid system -relationship: BFO:0000050 UBERON:0002405 ! immune system +relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system +relationship: BFO:0000050 UBERON:0002405 ! part of immune system [Term] id: UBERON:0002469 @@ -10629,8 +10631,8 @@ synonym: "tunica mucosa oesophagi" EXACT [] synonym: "tunica mucosa oesophagi" RELATED [] is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001096 ! wall of esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0002470 @@ -10650,8 +10652,8 @@ synonym: "paw" RELATED [] synonym: "paw/hand/foot/hoof" RELATED [] synonym: "pod" RELATED [] is_a: UBERON:0002529 ! limb segment -relationship: BFO:0000051 UBERON:0006717 ! autopodial skeleton -relationship: RO:0002202 UBERON:0010130 ! embryonic autopod plate +relationship: BFO:0000051 UBERON:0006717 ! has part autopodial skeleton +relationship: RO:0002202 UBERON:0010130 ! develops_from embryonic autopod plate [Term] id: UBERON:0002472 @@ -10664,7 +10666,7 @@ synonym: "proximal segment of free limb" RELATED [] synonym: "stylopodial limb segment" EXACT [] synonym: "stylopodium" EXACT [] is_a: UBERON:0002529 ! limb segment -relationship: BFO:0000051 UBERON:0011583 ! stylopodial skeleton +relationship: BFO:0000051 UBERON:0011583 ! has part stylopodial skeleton [Term] id: UBERON:0002481 @@ -10678,7 +10680,7 @@ synonym: "osteogenic tissue" EXACT [] synonym: "portion of bone tissue" RELATED [] is_a: UBERON:0004755 ! skeletal tissue disjoint_from: UBERON:0005090 ! muscle structure -relationship: BFO:0000050 UBERON:0001474 ! bone element +relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0002485 @@ -10692,9 +10694,9 @@ synonym: "prostatic duct" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: RO:0002202 UBERON:0003820 ! prostate bud +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: RO:0002202 UBERON:0003820 ! develops_from prostate bud [Term] id: UBERON:0002495 @@ -10702,7 +10704,7 @@ name: long bone def: "Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO:wd]." [] synonym: "os longum" RELATED [] is_a: UBERON:0001474 ! bone element -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton [Term] id: UBERON:0002499 @@ -10711,7 +10713,7 @@ def: "The labyrinth is a system of fluid passages in the inner ear, including bo is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001849 ! membranous labyrinth +relationship: BFO:0000050 UBERON:0001849 ! part of membranous labyrinth [Term] id: UBERON:0002506 @@ -10728,8 +10730,8 @@ synonym: "pigmented epithelium of iris" EXACT [] is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: BFO:0000050 UBERON:0001769 ! iris +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: BFO:0000050 UBERON:0001769 ! part of iris [Term] id: UBERON:0002507 @@ -10741,7 +10743,7 @@ synonym: "parietal abdominal lymph node" RELATED [] is_a: UBERON:0000029 ! lymph node is_a: UBERON:0005172 ! abdomen element intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0002509 @@ -10752,8 +10754,8 @@ synonym: "nodi lymphoidei mesenterici" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0015860 ! visceral abdominal lymph node intersection_of: UBERON:0002507 ! abdominal lymph node -intersection_of: BFO:0000050 UBERON:0002095 ! mesentery -relationship: BFO:0000050 UBERON:0002095 ! mesentery +intersection_of: BFO:0000050 UBERON:0002095 ! part of mesentery +relationship: BFO:0000050 UBERON:0002095 ! part of mesentery [Term] id: UBERON:0002512 @@ -10766,9 +10768,9 @@ synonym: "ovarian corpus luteum" EXACT [] is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005398 ! female reproductive gland -relationship: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: BFO:0000050 UBERON:0000992 ! ovary -relationship: RO:0002202 UBERON:0001305 ! ovarian follicle +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: RO:0002202 UBERON:0001305 ! develops_from ovarian follicle [Term] id: UBERON:0002513 @@ -10780,16 +10782,16 @@ synonym: "ossified chondrogenic bone" EXACT [] is_a: UBERON:0001474 ! bone element is_a: UBERON:0010363 ! endochondral element intersection_of: UBERON:0001474 ! bone element -intersection_of: RO:0002202 UBERON:0005863 ! cartilaginous condensation -relationship: RO:0002202 UBERON:0007844 ! cartilage element +intersection_of: RO:0002202 UBERON:0005863 ! develops_from cartilaginous condensation +relationship: RO:0002202 UBERON:0007844 ! develops_from cartilage element [Term] id: UBERON:0002515 name: periosteum def: "the thick fibrous membrane that closely invests the entire surface of a bone except the articular cartilage at synovial joints" [] is_a: UBERON:0000158 ! membranous layer -relationship: BFO:0000050 UBERON:0001474 ! bone element -relationship: BFO:0000051 UBERON:0011822 ! dense irregular connective tissue +relationship: BFO:0000050 UBERON:0001474 ! part of bone element +relationship: BFO:0000051 UBERON:0011822 ! has part dense irregular connective tissue [Term] id: UBERON:0002517 @@ -10800,8 +10802,8 @@ synonym: "base of skull" EXACT [] synonym: "basis cranii" EXACT [] synonym: "cranial base" EXACT [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0001703 ! neurocranium -relationship: BFO:0000050 UBERON:0002241 ! chondrocranium +relationship: BFO:0000050 UBERON:0001703 ! part of neurocranium +relationship: BFO:0000050 UBERON:0002241 ! part of chondrocranium [Term] id: UBERON:0002518 @@ -10813,7 +10815,7 @@ synonym: "utricle and saccule" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006585 ! vestibular organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001862 ! vestibular labyrinth +relationship: BFO:0000050 UBERON:0001862 ! part of vestibular labyrinth [Term] id: UBERON:0002521 @@ -10832,7 +10834,7 @@ synonym: "Bichat's tunic" RELATED [] synonym: "intima" RELATED [] synonym: "tunica intima vasorum" RELATED [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000051 UBERON:0001986 ! endothelium +relationship: BFO:0000051 UBERON:0001986 ! has part endothelium [Term] id: UBERON:0002527 @@ -10845,8 +10847,8 @@ synonym: "pancreatic node" EXACT [] synonym: "pyloric lymph node" RELATED [] is_a: UBERON:0002507 ! abdominal lymph node intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000050 UBERON:0001264 ! pancreas +intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0002529 @@ -10860,10 +10862,10 @@ synonym: "segment of limb" EXACT [] synonym: "subdivision of limb" EXACT [] is_a: UBERON:0010538 ! paired limb/fin segment intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis -intersection_of: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb disjoint_from: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000051 UBERON:0014892 ! skeletal muscle organ +relationship: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000051 UBERON:0014892 ! has part skeletal muscle organ [Term] id: UBERON:0002530 @@ -10891,7 +10893,7 @@ name: arthropod sensillum def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [] synonym: "sensillum" EXACT [] is_a: UBERON:0000020 ! sense organ -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0002539 @@ -10904,8 +10906,8 @@ synonym: "visceral arch" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0010188 ! protuberance is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0008814 ! pharyngeal arch system -relationship: BFO:0000050 UBERON:0008816 ! embryonic head +relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system +relationship: BFO:0000050 UBERON:0008816 ! part of embryonic head [Term] id: UBERON:0002540 @@ -10916,7 +10918,7 @@ synonym: "lateral line stitches" RELATED [] synonym: "lateral-line organs" RELATED [] synonym: "ll" RELATED [] is_a: UBERON:0001032 ! sensory system -relationship: BFO:0000051 UBERON:0010202 ! lateral line +relationship: BFO:0000051 UBERON:0010202 ! has part lateral line [Term] id: UBERON:0002544 @@ -10927,11 +10929,11 @@ synonym: "digit (phalangeal portion) plus soft tissue" EXACT [] synonym: "limb digit" EXACT [] is_a: UBERON:0005881 ! autopodial extension intersection_of: UBERON:0005881 ! autopodial extension -intersection_of: BFO:0000050 UBERON:0012354 ! acropodium region -relationship: BFO:0000050 UBERON:0012140 ! digitopodium region -relationship: BFO:0000050 UBERON:0012354 ! acropodium region -relationship: BFO:0000050 UBERON:5002544 ! digit plus metapodial segment -relationship: BFO:0000051 UBERON:0015023 ! phalanx endochondral element +intersection_of: BFO:0000050 UBERON:0012354 ! part of acropodium region +relationship: BFO:0000050 UBERON:0012140 ! part of digitopodium region +relationship: BFO:0000050 UBERON:0012354 ! part of acropodium region +relationship: BFO:0000050 UBERON:5002544 ! part of digit plus metapodial segment +relationship: BFO:0000051 UBERON:0015023 ! has part phalanx endochondral element [Term] id: UBERON:0002546 @@ -10942,7 +10944,7 @@ synonym: "ectodermal cranial placode" EXACT [] synonym: "ectodermal placode" BROAD [] synonym: "placode" BROAD [] is_a: UBERON:0005085 ! ectodermal placode -relationship: BFO:0000050 UBERON:0000033 ! head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0002553 @@ -10985,9 +10987,9 @@ synonym: "segment of brain" EXACT [] is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000051 UBERON:0003714 ! neural tissue +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000051 UBERON:0003714 ! has part neural tissue [Term] id: UBERON:0002743 @@ -10996,7 +10998,7 @@ def: "A region of the brain consisting of ventral and rostral subcortical region synonym: "basal forebrain area" RELATED [] synonym: "pars basalis telencephali" RELATED [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0001890 ! forebrain +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain [Term] id: UBERON:0002749 @@ -11007,8 +11009,8 @@ synonym: "segment of cerebellar cortex" EXACT [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure -intersection_of: BFO:0000050 UBERON:0002129 ! cerebellar cortex -relationship: BFO:0000050 UBERON:0002129 ! cerebellar cortex +intersection_of: BFO:0000050 UBERON:0002129 ! part of cerebellar cortex +relationship: BFO:0000050 UBERON:0002129 ! part of cerebellar cortex [Term] id: UBERON:0002827 @@ -11032,10 +11034,10 @@ synonym: "vestibulocochlear ganglia" RELATED [] synonym: "vestibulocochlear VIII ganglion" EXACT [] is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0002105 ! vestibulo-auditory system -relationship: RO:0002202 UBERON:0003249 ! epithelium of otic placode -relationship: RO:0002202 UBERON:0005565 ! facio-acoustic neural crest -relationship: RO:0002202 UBERON:0012175 ! acoustico-facial VII-VIII ganglion complex +relationship: BFO:0000050 UBERON:0002105 ! part of vestibulo-auditory system +relationship: RO:0002202 UBERON:0003249 ! develops_from epithelium of otic placode +relationship: RO:0002202 UBERON:0005565 ! develops_from facio-acoustic neural crest +relationship: RO:0002202 UBERON:0012175 ! develops_from acoustico-facial VII-VIII ganglion complex [Term] id: UBERON:0002926 @@ -11043,9 +11045,9 @@ name: gustatory epithelium def: "A sensory epithelium that is part of a gustatory system." [] is_a: UBERON:0006934 ! sensory epithelium intersection_of: UBERON:0006934 ! sensory epithelium -intersection_of: BFO:0000050 UBERON:0001033 ! gustatory system -relationship: BFO:0000050 UBERON:0000012 ! somatic nervous system -relationship: BFO:0000050 UBERON:0001033 ! gustatory system +intersection_of: BFO:0000050 UBERON:0001033 ! part of gustatory system +relationship: BFO:0000050 UBERON:0000012 ! part of somatic nervous system +relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system [Term] id: UBERON:0003037 @@ -11064,8 +11066,8 @@ synonym: "olfactory placodes" EXACT [] synonym: "placoda nasalis" EXACT [] synonym: "placoda olfactoria" EXACT [] is_a: UBERON:0009955 ! neurogenic placode -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm -relationship: RO:0002202 UBERON:0002346 ! neurectoderm +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm +relationship: RO:0002202 UBERON:0002346 ! develops_from neurectoderm [Term] id: UBERON:0003051 @@ -11081,8 +11083,8 @@ is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0000924 ! ectoderm -relationship: RO:0002202 UBERON:0006273 ! otic pit +relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm +relationship: RO:0002202 UBERON:0006273 ! develops_from otic pit [Term] id: UBERON:0003052 @@ -11099,8 +11101,8 @@ synonym: "midbrain hindbrain boundary" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: RO:0002202 UBERON:0009615 ! midbrain hindbrain boundary neural plate +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: RO:0002495 UBERON:0009615 ! immediate transformation of midbrain hindbrain boundary neural plate [Term] id: UBERON:0003055 @@ -11114,9 +11116,9 @@ synonym: "periderm" RELATED [] synonym: "skin periderm" EXACT [] is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0002199 ! integument -relationship: RO:0002202 UBERON:0000076 ! external ectoderm -relationship: RO:0002202 UBERON:0007383 ! enveloping layer of ectoderm +relationship: BFO:0000050 UBERON:0002199 ! part of integument +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm +relationship: RO:0002202 UBERON:0007383 ! develops_from enveloping layer of ectoderm [Term] id: UBERON:0003056 @@ -11125,7 +11127,7 @@ def: "The portion of neural plate anterior to the mid-hindbrain junction." [] synonym: "anterior neural plate" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0003075 ! neural plate +relationship: BFO:0000050 UBERON:0003075 ! part of neural plate [Term] id: UBERON:0003057 @@ -11133,7 +11135,7 @@ name: chordal neural plate def: "The portion of neural plate posterior to the mid-hindbrain junction." [] synonym: "posterior neural plate" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003075 ! neural plate +relationship: BFO:0000050 UBERON:0003075 ! part of neural plate [Term] id: UBERON:0003059 @@ -11147,8 +11149,8 @@ synonym: "somitomeric mesoderm" RELATED [] synonym: "unsegmented mesenchyme" RELATED [] synonym: "unsegmented paraxial mesoderm" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0003077 ! paraxial mesoderm -relationship: RO:0002202 UBERON:0007282 ! presumptive segmental plate +relationship: BFO:0000050 UBERON:0003077 ! part of paraxial mesoderm +relationship: RO:0002495 UBERON:0007282 ! immediate transformation of presumptive segmental plate [Term] id: UBERON:0003060 @@ -11159,9 +11161,9 @@ synonym: "ductus pronephricus" RELATED [] synonym: "pronephric ducts" RELATED [] is_a: UBERON:0009201 ! nephric duct is_a: UBERON:0012275 ! meso-epithelium -relationship: BFO:0000050 UBERON:0002120 ! pronephros -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm -relationship: RO:0002202 UBERON:0005721 ! pronephric mesoderm +relationship: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm +relationship: RO:0002202 UBERON:0005721 ! develops_from pronephric mesoderm [Term] id: UBERON:0003061 @@ -11175,7 +11177,7 @@ synonym: "VBI" RELATED [] synonym: "ventral blood island" RELATED [] synonym: "ventral lateral plate mesoderm" BROAD [] is_a: UBERON:0006598 ! presumptive structure -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm [Term] id: UBERON:0003063 @@ -11184,8 +11186,8 @@ def: "A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end synonym: "head mesenchyme" BROAD [] synonym: "head mesoderm" BROAD [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003068 ! axial mesoderm -relationship: RO:0002202 UBERON:0034878 ! prechordal mesoderm +relationship: BFO:0000050 UBERON:0003068 ! part of axial mesoderm +relationship: RO:0002202 UBERON:0034878 ! develops_from prechordal mesoderm [Term] id: UBERON:0003064 @@ -11197,9 +11199,9 @@ synonym: "intermediate plate" RELATED [] synonym: "intermediate plate mesoderm" RELATED [] synonym: "mesenchyma intermedium" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000926 ! mesoderm -relationship: BFO:0000050 UBERON:0005256 ! trunk mesenchyme -relationship: RO:0002202 UBERON:0000926 ! mesoderm +relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm +relationship: BFO:0000050 UBERON:0005256 ! part of trunk mesenchyme +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0003066 @@ -11233,7 +11235,7 @@ name: axial mesoderm def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [] synonym: "chordamesoderm" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000926 ! mesoderm +relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm [Term] id: UBERON:0003069 @@ -11246,7 +11248,7 @@ synonym: "octaval placode" RELATED [] synonym: "octaval VIII placode" RELATED [] synonym: "placoda otica" EXACT [] is_a: UBERON:0003067 ! dorsolateral placode -relationship: BFO:0000050 UBERON:0001690 ! ear +relationship: BFO:0000050 UBERON:0001690 ! part of ear [Term] id: UBERON:0003071 @@ -11267,7 +11269,7 @@ is_a: UBERON:0001048 ! primordium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0003056 ! pre-chordal neural plate +relationship: BFO:0000050 UBERON:0003056 ! part of pre-chordal neural plate [Term] id: UBERON:0003072 @@ -11279,8 +11281,8 @@ synonym: "ocular cup" RELATED [] synonym: "ophtalmic cup" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0010312 ! immature eye -relationship: RO:0002202 UBERON:0004128 ! optic vesicle +relationship: BFO:0000050 UBERON:0010312 ! part of immature eye +relationship: RO:0002202 UBERON:0004128 ! develops_from optic vesicle [Term] id: UBERON:0003073 @@ -11292,7 +11294,7 @@ is_a: UBERON:0002546 ! cranial placode is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010312 ! immature eye is_a: UBERON:0011814 ! non-neurogenic ectodermal placode -relationship: BFO:0000050 UBERON:0010312 ! immature eye +relationship: BFO:0000050 UBERON:0010312 ! part of immature eye [Term] id: UBERON:0003074 @@ -11305,8 +11307,8 @@ synonym: "renal duct" RELATED [] synonym: "Wolffian duct" EXACT [] is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0009201 ! nephric duct -relationship: RO:0002202 UBERON:0003060 ! pronephric duct -relationship: RO:0002202 UBERON:0005792 ! nephric ridge +relationship: RO:0002202 UBERON:0003060 ! develops_from pronephric duct +relationship: RO:0002202 UBERON:0005792 ! develops_from nephric ridge [Term] id: UBERON:0003075 @@ -11318,15 +11320,15 @@ is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system -relationship: RO:0002202 UBERON:0007284 ! presumptive neural plate +relationship: RO:0002495 UBERON:0007284 ! immediate transformation of presumptive neural plate [Term] id: UBERON:0003076 name: posterior neural tube is_a: UBERON:0002050 ! embryonic structure disjoint_from: UBERON:0003080 ! anterior neural tube -relationship: BFO:0000050 UBERON:0001049 ! neural tube -relationship: RO:0002202 UBERON:0003057 ! chordal neural plate +relationship: BFO:0000050 UBERON:0001049 ! part of neural tube +relationship: RO:0002202 UBERON:0003057 ! develops_from chordal neural plate [Term] id: UBERON:0003077 @@ -11338,15 +11340,15 @@ synonym: "somitic mesoderm" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0007285 ! presumptive paraxial mesoderm +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: RO:0002495 UBERON:0007285 ! immediate transformation of presumptive paraxial mesoderm [Term] id: UBERON:0003080 name: anterior neural tube is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0001049 ! neural tube -relationship: RO:0002202 UBERON:0003056 ! pre-chordal neural plate +relationship: BFO:0000050 UBERON:0001049 ! part of neural tube +relationship: RO:0002202 UBERON:0003056 ! develops_from pre-chordal neural plate [Term] id: UBERON:0003081 @@ -11361,8 +11363,8 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue -relationship: BFO:0000050 UBERON:0000926 ! mesoderm -relationship: RO:0002202 UBERON:0000926 ! mesoderm +relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0003082 @@ -11375,8 +11377,8 @@ synonym: "myotome region" RELATED [] synonym: "myotomes" RELATED [] synonym: "myotomus" RELATED [] is_a: UBERON:0017650 ! developing mesenchymal structure -relationship: RO:0002202 UBERON:0002329 ! somite -relationship: RO:0002202 UBERON:0004290 ! dermomyotome +relationship: RO:0002202 UBERON:0002329 ! develops_from somite +relationship: RO:0002202 UBERON:0004290 ! develops_from dermomyotome [Term] id: UBERON:0003083 @@ -11387,7 +11389,7 @@ synonym: "trunk crest" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0003084 @@ -11396,9 +11398,9 @@ def: "Bilateral groups of cells consisting of three rows: one row of endocardial synonym: "cardiac field" RELATED [] synonym: "fused heart primordium" RELATED [] is_a: UBERON:0001048 ! primordium -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm -relationship: RO:0002202 UBERON:0007005 ! cardiogenic splanchnic mesoderm +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm +relationship: RO:0002202 UBERON:0007005 ! develops_from cardiogenic splanchnic mesoderm [Term] id: UBERON:0003089 @@ -11408,7 +11410,7 @@ synonym: "sclerotomes" EXACT [] synonym: "sclerotomus" RELATED [] is_a: UBERON:0005856 ! developing mesenchymal condensation is_a: UBERON:0007530 ! migrating mesenchyme population -relationship: RO:0002202 UBERON:0002329 ! somite +relationship: RO:0002202 UBERON:0002329 ! develops_from somite [Term] id: UBERON:0003091 @@ -11418,9 +11420,9 @@ synonym: "thyroid primordia" RELATED [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium is_a: UBERON:0004119 ! endoderm-derived structure -relationship: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: RO:0002202 UBERON:0007123 ! pharyngeal pouch 2 +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: RO:0002202 UBERON:0007123 ! develops_from pharyngeal pouch 2 [Term] id: UBERON:0003099 @@ -11436,7 +11438,7 @@ synonym: "head neural crest" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0003100 @@ -11464,7 +11466,7 @@ synonym: "surface feature" RELATED [] synonym: "surface region" RELATED [] synonym: "surface structures" RELATED [] is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000050 UBERON:0002416 ! integumental system +relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0003103 @@ -11500,8 +11502,8 @@ synonym: "roofing bones of the skull" RELATED [] synonym: "skull exoskeleton" RELATED [] synonym: "skull roof" NARROW [] is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system -relationship: BFO:0000050 UBERON:0010323 ! cranial skeletal system -relationship: BFO:0000050 UBERON:0010364 ! dermal skeleton +relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system +relationship: BFO:0000050 UBERON:0010364 ! part of dermal skeleton [Term] id: UBERON:0003114 @@ -11551,8 +11553,8 @@ synonym: "first branchial arch artery" EXACT [] synonym: "mandibular aortic arch" EXACT [] is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery -intersection_of: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 -relationship: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 +intersection_of: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 +relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 [Term] id: UBERON:0003119 @@ -11569,8 +11571,8 @@ synonym: "second aortic arch" EXACT [] synonym: "second branchial arch artery" EXACT [] is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery -intersection_of: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 -relationship: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 +intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 +relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0003120 @@ -11587,8 +11589,8 @@ synonym: "third aortic arch" EXACT [] synonym: "third branchial arch artery" EXACT [] is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery -intersection_of: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 -relationship: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 +intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 +relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0003123 @@ -11605,8 +11607,8 @@ synonym: "sixth aortic arch" EXACT [] synonym: "sixth branchial arch artery" EXACT [] is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery -intersection_of: BFO:0000050 UBERON:0003117 ! pharyngeal arch 6 -relationship: BFO:0000050 UBERON:0003117 ! pharyngeal arch 6 +intersection_of: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 +relationship: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 [Term] id: UBERON:0003124 @@ -11620,9 +11622,9 @@ synonym: "fetal chorion" EXACT [] synonym: "uterine chorion" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane -relationship: BFO:0000051 UBERON:0003265 ! chorionic mesenchyme -relationship: BFO:0000051 UBERON:0003374 ! chorionic ectoderm -relationship: RO:0002202 UBERON:0005971 ! amniotic fold +relationship: BFO:0000051 UBERON:0003265 ! has part chorionic mesenchyme +relationship: BFO:0000051 UBERON:0003374 ! has part chorionic ectoderm +relationship: RO:0002202 UBERON:0005971 ! develops_from amniotic fold [Term] id: UBERON:0003126 @@ -11633,8 +11635,8 @@ synonym: "tracheal tubule" RELATED [] synonym: "vertebrate trachea" EXACT [] synonym: "windpipe" EXACT [] is_a: UBERON:0000117 ! respiratory tube -relationship: BFO:0000050 UBERON:0007196 ! tracheobronchial tree -relationship: RO:0002202 UBERON:0008947 ! respiratory primordium +relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree +relationship: RO:0002202 UBERON:0008947 ! develops_from respiratory primordium [Term] id: UBERON:0003127 @@ -11643,8 +11645,8 @@ def: "A respiratory airway that is part of an open tracheal system." [] synonym: "invertebrate trachea" EXACT [] synonym: "trachea" BROAD [] is_a: UBERON:0001005 ! respiratory airway -relationship: BFO:0000050 UBERON:0005155 ! open tracheal system -relationship: BFO:0000051 UBERON:0003914 ! epithelial tube +relationship: BFO:0000050 UBERON:0005155 ! part of open tracheal system +relationship: BFO:0000051 UBERON:0003914 ! has part epithelial tube [Term] id: UBERON:0003128 @@ -11659,7 +11661,7 @@ synonym: "skeletal system of head" RELATED [] synonym: "skull minus mandible" EXACT [] synonym: "upper part of skull" EXACT [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0003129 ! skull +relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0003129 @@ -11669,10 +11671,10 @@ synonym: "cranial skeleton" RELATED [] synonym: "skeletal system of head" RELATED [] is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0010323 ! cranial skeletal system -relationship: BFO:0000051 UBERON:0003128 ! cranium -relationship: BFO:0000051 UBERON:0003278 ! skeleton of lower jaw +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system +relationship: BFO:0000051 UBERON:0003128 ! has part cranium +relationship: BFO:0000051 UBERON:0003278 ! has part skeleton of lower jaw [Term] id: UBERON:0003133 @@ -11702,8 +11704,8 @@ synonym: "reproductive system organ of female organism" EXACT [] synonym: "sex organ of female organism" EXACT [] is_a: UBERON:0003133 ! reproductive organ intersection_of: UBERON:0003133 ! reproductive organ -intersection_of: BFO:0000050 UBERON:0003100 ! female organism -relationship: BFO:0000050 UBERON:0000474 ! female reproductive system +intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism +relationship: BFO:0000050 UBERON:0000474 ! part of female reproductive system [Term] id: UBERON:0003135 @@ -11722,8 +11724,8 @@ synonym: "reproductive system organ of male organism" EXACT [] synonym: "sex organ of male organism" EXACT [] is_a: UBERON:0003133 ! reproductive organ intersection_of: UBERON:0003133 ! reproductive organ -intersection_of: BFO:0000050 UBERON:0003101 ! male organism -relationship: BFO:0000050 UBERON:0000079 ! male reproductive system +intersection_of: BFO:0000050 UBERON:0003101 ! part of male organism +relationship: BFO:0000050 UBERON:0000079 ! part of male reproductive system [Term] id: UBERON:0003210 @@ -11732,7 +11734,7 @@ def: "barrier in the choroid plexus located in the lateral, third, and fourth br synonym: "blood-CSF barrier" EXACT [] is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001886 ! choroid plexus +relationship: BFO:0000050 UBERON:0001886 ! part of choroid plexus [Term] id: UBERON:0003214 @@ -11751,8 +11753,8 @@ synonym: "mammary alveolus" EXACT [] is_a: UBERON:0003215 ! alveolus is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003215 ! alveolus -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001912 ! lobule of mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001912 ! part of lobule of mammary gland [Term] id: UBERON:0003215 @@ -11766,8 +11768,8 @@ name: ovary septum def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [] is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000050 UBERON:0000992 ! ovary +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000050 UBERON:0000992 ! part of ovary [Term] id: UBERON:0003220 @@ -11781,7 +11783,7 @@ is_a: UBERON:0003918 ! kidney mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure -relationship: RO:0002202 UBERON:0003074 ! mesonephric duct +relationship: RO:0002202 UBERON:0003074 ! develops_from mesonephric duct [Term] id: UBERON:0003221 @@ -11795,8 +11797,8 @@ synonym: "phalanx bone" EXACT [] is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0012357 ! digitopodium bone is_a: UBERON:0015023 ! phalanx endochondral element -relationship: BFO:0000050 UBERON:5102544 ! individual digit of digitopodial skeleton -relationship: RO:0002202 UBERON:0010701 ! phalanx cartilage element +relationship: BFO:0000050 UBERON:5102544 ! part of individual digit of digitopodial skeleton +relationship: RO:0002202 UBERON:0010701 ! develops_from phalanx cartilage element [Term] id: UBERON:0003231 @@ -11815,9 +11817,9 @@ synonym: "regio coxae epithelial tissue" EXACT [] synonym: "regio coxae epithelium" EXACT [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001464 ! hip -relationship: BFO:0000050 UBERON:0001464 ! hip -relationship: RO:0002202 UBERON:0003371 ! pelvic appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0001464 ! part of hip +relationship: BFO:0000050 UBERON:0001464 ! part of hip +relationship: RO:0002202 UBERON:0003371 ! develops_from pelvic appendage bud ectoderm [Term] id: UBERON:0003232 @@ -11828,9 +11830,9 @@ synonym: "knee epithelial tissue" EXACT [] synonym: "knee epithelium" EXACT [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001465 ! knee -relationship: BFO:0000050 UBERON:0001465 ! knee -relationship: RO:0002202 UBERON:0003371 ! pelvic appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0001465 ! part of knee +relationship: BFO:0000050 UBERON:0001465 ! part of knee +relationship: RO:0002202 UBERON:0003371 ! develops_from pelvic appendage bud ectoderm [Term] id: UBERON:0003233 @@ -11841,9 +11843,9 @@ synonym: "shoulder epithelial tissue" EXACT [] synonym: "shoulder epithelium" EXACT [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0001467 ! shoulder -relationship: RO:0002202 UBERON:0003372 ! pectoral appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: RO:0002202 UBERON:0003372 ! develops_from pectoral appendage bud ectoderm [Term] id: UBERON:0003236 @@ -11859,8 +11861,8 @@ synonym: "ventral mandibular arch epithelium" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035037 ! jaw epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001710 ! lower jaw region -relationship: BFO:0000050 UBERON:0001710 ! lower jaw region +intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region +relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region [Term] id: UBERON:0003241 @@ -11884,8 +11886,8 @@ synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [] synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [] is_a: UBERON:0006932 ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001853 ! utricle of membranous labyrinth -relationship: BFO:0000050 UBERON:0002214 ! macula of utricle of membranous labyrinth +intersection_of: BFO:0000050 UBERON:0001853 ! part of utricle of membranous labyrinth +relationship: BFO:0000050 UBERON:0002214 ! part of macula of utricle of membranous labyrinth [Term] id: UBERON:0003242 @@ -11909,8 +11911,8 @@ synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [] synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [] is_a: UBERON:0006932 ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001854 ! saccule of membranous labyrinth -relationship: BFO:0000050 UBERON:0001854 ! saccule of membranous labyrinth +intersection_of: BFO:0000050 UBERON:0001854 ! part of saccule of membranous labyrinth +relationship: BFO:0000050 UBERON:0001854 ! part of saccule of membranous labyrinth [Term] id: UBERON:0003243 @@ -11929,8 +11931,8 @@ synonym: "Reissner's canal epithelial tissue" EXACT [] synonym: "Reissner's canal epithelium" EXACT [] is_a: UBERON:0006937 ! inner ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001855 ! cochlear duct of membranous labyrinth -relationship: BFO:0000050 UBERON:0001855 ! cochlear duct of membranous labyrinth +intersection_of: BFO:0000050 UBERON:0001855 ! part of cochlear duct of membranous labyrinth +relationship: BFO:0000050 UBERON:0001855 ! part of cochlear duct of membranous labyrinth [Term] id: UBERON:0003244 @@ -11943,9 +11945,9 @@ synonym: "mammary gland epithelial tissue" EXACT [] synonym: "mammary gland epithelium" EXACT [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: RO:0002202 UBERON:0011272 ! embryonic skin basal layer +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: RO:0002202 UBERON:0011272 ! develops_from embryonic skin basal layer [Term] id: UBERON:0003248 @@ -11957,9 +11959,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0006871 ! embryonic footplate -relationship: BFO:0000050 UBERON:0006871 ! embryonic footplate -relationship: RO:0002202 UBERON:0003372 ! pectoral appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0006871 ! part of embryonic footplate +relationship: BFO:0000050 UBERON:0006871 ! part of embryonic footplate +relationship: RO:0002202 UBERON:0003372 ! develops_from pectoral appendage bud ectoderm [Term] id: UBERON:0003249 @@ -11973,8 +11975,8 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0003069 ! otic placode -relationship: BFO:0000050 UBERON:0003069 ! otic placode +intersection_of: BFO:0000050 UBERON:0003069 ! part of otic placode +relationship: BFO:0000050 UBERON:0003069 ! part of otic placode [Term] id: UBERON:0003254 @@ -11986,8 +11988,8 @@ is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0012275 ! meso-epithelium -relationship: BFO:0000050 UBERON:0000305 ! amnion -relationship: RO:0002202 UBERON:0002532 ! epiblast (generic) +relationship: BFO:0000050 UBERON:0000305 ! part of amnion +relationship: RO:0002202 UBERON:0002532 ! develops_from epiblast (generic) [Term] id: UBERON:0003258 @@ -11998,8 +12000,8 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015833 ! foregut epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium -intersection_of: BFO:0000050 UBERON:0001041 ! foregut -intersection_of: RO:0002202 UBERON:0000925 ! endoderm +intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0003259 @@ -12010,8 +12012,8 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003352 ! epithelium of midgut is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium -intersection_of: BFO:0000050 UBERON:0001045 ! midgut -intersection_of: RO:0002202 UBERON:0000925 ! endoderm +intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0003260 @@ -12022,8 +12024,8 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003353 ! epithelium of hindgut is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium -intersection_of: BFO:0000050 UBERON:0001046 ! hindgut -intersection_of: RO:0002202 UBERON:0000925 ! endoderm +intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0003261 @@ -12033,9 +12035,9 @@ synonym: "endoderm of thyroid primordium" EXACT [] is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000925 ! endoderm -intersection_of: BFO:0000050 UBERON:0003091 ! thyroid primordium -relationship: BFO:0000050 UBERON:0003091 ! thyroid primordium -relationship: RO:0002202 UBERON:0007690 ! early pharyngeal endoderm +intersection_of: BFO:0000050 UBERON:0003091 ! part of thyroid primordium +relationship: BFO:0000050 UBERON:0003091 ! part of thyroid primordium +relationship: RO:0002202 UBERON:0007690 ! develops_from early pharyngeal endoderm [Term] id: UBERON:0003262 @@ -12051,9 +12053,9 @@ is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000305 ! amnion -relationship: BFO:0000050 UBERON:0000305 ! amnion -relationship: RO:0002202 UBERON:0005728 ! extraembryonic mesoderm +intersection_of: BFO:0000050 UBERON:0000305 ! part of amnion +relationship: BFO:0000050 UBERON:0000305 ! part of amnion +relationship: RO:0002202 UBERON:0005728 ! develops_from extraembryonic mesoderm [Term] id: UBERON:0003265 @@ -12068,10 +12070,10 @@ is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003124 ! chorion -relationship: BFO:0000050 UBERON:0003124 ! chorion -relationship: RO:0002202 UBERON:0004871 ! somatic layer of lateral plate mesoderm -relationship: RO:0002202 UBERON:0005728 ! extraembryonic mesoderm +intersection_of: BFO:0000050 UBERON:0003124 ! part of chorion +relationship: BFO:0000050 UBERON:0003124 ! part of chorion +relationship: RO:0002202 UBERON:0004871 ! develops_from somatic layer of lateral plate mesoderm +relationship: RO:0002202 UBERON:0005728 ! develops_from extraembryonic mesoderm [Term] id: UBERON:0003268 @@ -12087,8 +12089,8 @@ is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001091 ! calcareous tooth -intersection_of: BFO:0000050 UBERON:0001710 ! lower jaw region -relationship: BFO:0000050 UBERON:0009679 ! set of lower jaw teeth +intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region +relationship: BFO:0000050 UBERON:0009679 ! part of set of lower jaw teeth [Term] id: UBERON:0003269 @@ -12101,8 +12103,8 @@ synonym: "skeletal muscle tissue of eye" EXACT [] is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0003273 @@ -12121,8 +12123,8 @@ synonym: "mandibles" RELATED [] synonym: "mandibular series" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0001708 ! jaw skeleton -relationship: BFO:0000050 UBERON:0001710 ! lower jaw region +relationship: BFO:0000050 UBERON:0001708 ! part of jaw skeleton +relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region [Term] id: UBERON:0003279 @@ -12135,7 +12137,7 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001901 ! epithelium of trachea is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0003126 ! trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0003281 @@ -12149,8 +12151,8 @@ synonym: "stomach mesentery" EXACT [] synonym: "ventriculus mesentery" EXACT [] is_a: UBERON:0004854 ! gastrointestinal system mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0000945 ! stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0000945 ! part of stomach [Term] id: UBERON:0003282 @@ -12161,8 +12163,8 @@ synonym: "heart mesentery" EXACT [] synonym: "mesocardium" RELATED [] is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0003283 @@ -12177,7 +12179,7 @@ synonym: "oesophagus mesentery" EXACT [] is_a: UBERON:0001975 ! serosa of esophagus is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0003284 @@ -12186,8 +12188,8 @@ def: "A mesentery that is part of a midgut [Automatically generated definition]. synonym: "midgut mesentery" EXACT [] is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001045 ! midgut -relationship: BFO:0000050 UBERON:0001045 ! midgut +intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut +relationship: BFO:0000050 UBERON:0001045 ! part of midgut [Term] id: UBERON:0003288 @@ -12199,8 +12201,8 @@ synonym: "midbrain meninges" EXACT [] synonym: "midbrain meninx" EXACT [] is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0001891 ! midbrain -relationship: BFO:0000050 UBERON:0001891 ! midbrain +intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain +relationship: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0003289 @@ -12211,8 +12213,8 @@ synonym: "telencephalon meninges" EXACT [] synonym: "telencephalon meninx" EXACT [] is_a: UBERON:0003548 ! forebrain meninges intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0003290 @@ -12235,8 +12237,8 @@ synonym: "meninx of interbrain" EXACT [] synonym: "meninx of mature diencephalon" EXACT [] is_a: UBERON:0003548 ! forebrain meninges intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0003291 @@ -12248,9 +12250,9 @@ synonym: "meninges of hindbrain" EXACT [] synonym: "rhomencephalon meninges" RELATED [] is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: RO:0002202 UBERON:0010091 ! future hindbrain meninx +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: RO:0002495 UBERON:0010091 ! immediate transformation of future hindbrain meninx [Term] id: UBERON:0003292 @@ -12265,8 +12267,8 @@ synonym: "spinal meninx" EXACT [] is_a: UBERON:0002360 ! meninx is_a: UBERON:0005174 ! dorsal region element intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0003294 @@ -12275,8 +12277,8 @@ def: "A gland that is part of a foregut [Automatically generated definition]." [ synonym: "foregut gland" EXACT [] is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001041 ! foregut -relationship: BFO:0000050 UBERON:0001041 ! foregut +intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut +relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0003295 @@ -12287,8 +12289,8 @@ synonym: "pharynx gland" EXACT [] is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0003296 @@ -12299,8 +12301,8 @@ synonym: "interbrain gland" EXACT [] is_a: UBERON:0002530 ! gland is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0003297 @@ -12311,8 +12313,8 @@ synonym: "integumental system gland" EXACT [] synonym: "integumentary gland" EXACT [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0002416 ! integumental system -relationship: BFO:0000050 UBERON:0002416 ! integumental system +intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system +relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0003304 @@ -12325,10 +12327,10 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007503 ! epithelial vesicle is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0003061 ! blood island -intersection_of: BFO:0000050 UBERON:0000926 ! mesoderm -relationship: BFO:0000050 UBERON:0000926 ! mesoderm -relationship: BFO:0000050 UBERON:0007798 ! vascular system -relationship: RO:0002202 UBERON:0000926 ! mesoderm +intersection_of: BFO:0000050 UBERON:0000926 ! part of mesoderm +relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm +relationship: BFO:0000050 UBERON:0007798 ! part of vascular system +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0003312 @@ -12337,8 +12339,8 @@ def: "Mesenchyme that is part of a developing testis [Automatically generated de synonym: "testis mesenchyme" EXACT [] is_a: UBERON:0003855 ! gonad mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000473 ! testis -relationship: BFO:0000050 UBERON:0000473 ! testis +intersection_of: BFO:0000050 UBERON:0000473 ! part of testis +relationship: BFO:0000050 UBERON:0000473 ! part of testis [Term] id: UBERON:0003314 @@ -12348,9 +12350,9 @@ synonym: "mesenchyme of eye" EXACT [] is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009891 ! facial mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: RO:0002202 UBERON:0009920 ! optic neural crest +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: RO:0002202 UBERON:0009920 ! develops_from optic neural crest [Term] id: UBERON:0003315 @@ -12367,8 +12369,8 @@ synonym: "mesenchyme of gonada of female reproductive system" EXACT [] synonym: "ovary mesenchyme" EXACT [] is_a: UBERON:0003855 ! gonad mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000050 UBERON:0000992 ! ovary +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000050 UBERON:0000992 ! part of ovary [Term] id: UBERON:0003316 @@ -12377,8 +12379,8 @@ def: "The portion of the yolk sac that is derived from mesoderm and consists of synonym: "yolk sac mesenchyme" EXACT [] is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001040 ! yolk sac -relationship: BFO:0000050 UBERON:0001040 ! yolk sac +intersection_of: BFO:0000050 UBERON:0001040 ! part of yolk sac +relationship: BFO:0000050 UBERON:0001040 ! part of yolk sac [Term] id: UBERON:0003320 @@ -12391,8 +12393,8 @@ synonym: "mesenchyme of regio coxae" EXACT [] synonym: "regio coxae mesenchyme" EXACT [] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001464 ! hip -relationship: BFO:0000050 UBERON:0001464 ! hip +intersection_of: BFO:0000050 UBERON:0001464 ! part of hip +relationship: BFO:0000050 UBERON:0001464 ! part of hip [Term] id: UBERON:0003321 @@ -12401,8 +12403,8 @@ def: "Mesenchyme that is part of a developing knee [Automatically generated defi synonym: "knee mesenchyme" EXACT [] is_a: UBERON:0003860 ! hindlimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001465 ! knee -relationship: BFO:0000050 UBERON:0001465 ! knee +intersection_of: BFO:0000050 UBERON:0001465 ! part of knee +relationship: BFO:0000050 UBERON:0001465 ! part of knee [Term] id: UBERON:0003322 @@ -12411,8 +12413,8 @@ def: "Mesenchyme that is part of a developing shoulder [Automatically generated synonym: "shoulder mesenchyme" EXACT [] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0001467 ! shoulder +intersection_of: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder [Term] id: UBERON:0003324 @@ -12424,9 +12426,9 @@ synonym: "ventral mandibular arch mesenchyme" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034995 ! jaw mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001710 ! lower jaw region -relationship: BFO:0000050 UBERON:0001710 ! lower jaw region -relationship: RO:0002202 UBERON:0006905 ! mandibular process mesenchyme +intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region +relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region +relationship: RO:0002202 UBERON:0006905 ! develops_from mandibular process mesenchyme [Term] id: UBERON:0003325 @@ -12448,8 +12450,8 @@ synonym: "pinna of ear mesenchyme" EXACT [] is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001757 ! pinna -relationship: BFO:0000050 UBERON:0001757 ! pinna +intersection_of: BFO:0000050 UBERON:0001757 ! part of pinna +relationship: BFO:0000050 UBERON:0001757 ! part of pinna [Term] id: UBERON:0003326 @@ -12466,8 +12468,8 @@ synonym: "mesenchyme of lobe of mammary gland" EXACT [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001911 ! mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001911 ! part of mammary gland [Term] id: UBERON:0003328 @@ -12476,9 +12478,9 @@ def: "Mesenchyme that is part of a footplate." [] synonym: "foot plate mesenchyme" EXACT [] is_a: UBERON:0010377 ! mesenchyme from somatopleure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0006871 ! embryonic footplate -relationship: BFO:0000050 UBERON:0006871 ! embryonic footplate -relationship: RO:0002202 UBERON:0003412 ! pelvic appendage bud mesenchyme +intersection_of: BFO:0000050 UBERON:0006871 ! part of embryonic footplate +relationship: BFO:0000050 UBERON:0006871 ! part of embryonic footplate +relationship: RO:0002202 UBERON:0003412 ! develops_from pelvic appendage bud mesenchyme [Term] id: UBERON:0003329 @@ -12494,8 +12496,8 @@ synonym: "submucosa of anatomical anal canal" EXACT [] is_a: UBERON:0001208 ! submucosa of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0000159 ! anal canal -relationship: BFO:0000050 UBERON:0000159 ! anal canal +intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal +relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0003330 @@ -12506,8 +12508,8 @@ synonym: "rectum submucosa" EXACT [] synonym: "tela submucosa recti" EXACT [] is_a: UBERON:0001208 ! submucosa of large intestine intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001052 ! rectum -relationship: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum +relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003331 @@ -12519,8 +12521,8 @@ synonym: "large bowel submucosa" EXACT [] synonym: "submucosa of large bowel" EXACT [] is_a: UBERON:0001208 ! submucosa of large intestine intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001155 ! colon -relationship: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon +relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0003332 @@ -12531,8 +12533,8 @@ synonym: "duodenal submucosa" EXACT [] synonym: "duodenum submucosa" EXACT [] is_a: UBERON:0001205 ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002114 ! duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0003333 @@ -12542,8 +12544,8 @@ synonym: "jejunal submucosa" EXACT [] synonym: "jejunum submucosa" EXACT [] is_a: UBERON:0001205 ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0002115 ! jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0002115 ! part of jejunum [Term] id: UBERON:0003334 @@ -12556,8 +12558,8 @@ synonym: "serous membrane of rectum" EXACT [] synonym: "visceral peritoneum of rectum" EXACT [] is_a: UBERON:0001209 ! serosa of large intestine intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001052 ! rectum -relationship: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum +relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003335 @@ -12574,8 +12576,8 @@ synonym: "serous membrane of large bowel" EXACT [] synonym: "visceral peritoneum of colon" EXACT [] is_a: UBERON:0001209 ! serosa of large intestine intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001155 ! colon -relationship: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon +relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0003336 @@ -12589,8 +12591,8 @@ synonym: "serous membrane of duodenum" EXACT [] synonym: "visceral peritoneum of duodenum" EXACT [] is_a: UBERON:0001206 ! serosa of small intestine intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002114 ! duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0003337 @@ -12603,8 +12605,8 @@ synonym: "serous membrane of jejunum" EXACT [] synonym: "visceral peritoneum of jejunum" EXACT [] is_a: UBERON:0001206 ! serosa of small intestine intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0002115 ! jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0002115 ! part of jejunum [Term] id: UBERON:0003338 @@ -12613,8 +12615,8 @@ def: "A spatially aggregated collection of nerve cell bodies in the PNS, consist synonym: "peripheral nervous system ganglion" EXACT [] is_a: UBERON:0000045 ! ganglion intersection_of: UBERON:0000045 ! ganglion -intersection_of: BFO:0000050 UBERON:0000010 ! peripheral nervous system -relationship: BFO:0000050 UBERON:0000010 ! peripheral nervous system +intersection_of: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system +relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0003339 @@ -12626,8 +12628,8 @@ synonym: "neuraxis ganglion" EXACT [] is_a: UBERON:0000045 ! ganglion is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000045 ! ganglion -intersection_of: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: BFO:0000050 UBERON:0001017 ! central nervous system +intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0003342 @@ -12669,8 +12671,8 @@ synonym: "organ mucosa of anatomical anal canal" EXACT [] is_a: UBERON:0001207 ! mucosa of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000159 ! anal canal -relationship: BFO:0000050 UBERON:0000159 ! anal canal +intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal +relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0003343 @@ -12709,8 +12711,8 @@ synonym: "subdivision of mouth mucous membrane" EXACT [] synonym: "subdivision of mouth organ mucosa" EXACT [] is_a: UBERON:0003729 ! mouth mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000166 ! oral opening -relationship: BFO:0000050 UBERON:0000166 ! oral opening +intersection_of: BFO:0000050 UBERON:0000166 ! part of oral opening +relationship: BFO:0000050 UBERON:0000166 ! part of oral opening [Term] id: UBERON:0003346 @@ -12727,8 +12729,8 @@ synonym: "rectum mucous membrane" EXACT [] synonym: "rectum organ mucosa" EXACT [] is_a: UBERON:0001207 ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001052 ! rectum -relationship: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum +relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003350 @@ -12738,8 +12740,8 @@ synonym: "lamina epithelialis mucosa" RELATED [] synonym: "lamina epithelialis mucosae" RELATED [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000344 ! mucosa -relationship: BFO:0000050 UBERON:0000344 ! mucosa +intersection_of: BFO:0000050 UBERON:0000344 ! part of mucosa +relationship: BFO:0000050 UBERON:0000344 ! part of mucosa [Term] id: UBERON:0003351 @@ -12753,9 +12755,9 @@ is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: RO:0002202 UBERON:0007690 ! early pharyngeal endoderm +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: RO:0002202 UBERON:0007690 ! develops_from early pharyngeal endoderm [Term] id: UBERON:0003352 @@ -12766,8 +12768,8 @@ synonym: "midgut epithelial tissue" EXACT [] synonym: "midgut epithelium" EXACT [] is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001045 ! midgut -relationship: BFO:0000050 UBERON:0001045 ! midgut +intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut +relationship: BFO:0000050 UBERON:0001045 ! part of midgut [Term] id: UBERON:0003353 @@ -12778,8 +12780,8 @@ synonym: "hindgut epithelial tissue" EXACT [] synonym: "hindgut epithelium" EXACT [] is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001046 ! hindgut -relationship: BFO:0000050 UBERON:0001046 ! hindgut +intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut +relationship: BFO:0000050 UBERON:0001046 ! part of hindgut [Term] id: UBERON:0003354 @@ -12792,8 +12794,8 @@ synonym: "rectum epithelium" EXACT [] is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0016885 ! epithelium of terminal part of digestive tract intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001052 ! rectum -relationship: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum +relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003357 @@ -12806,8 +12808,8 @@ synonym: "tongue epithelium" EXACT [] is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001723 ! tongue -relationship: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0003364 @@ -12818,8 +12820,8 @@ synonym: "right lung epithelial tissue" EXACT [] synonym: "right lung epithelium" EXACT [] is_a: UBERON:0000115 ! lung epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002167 ! right lung -relationship: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung +relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003365 @@ -12830,8 +12832,8 @@ synonym: "left lung epithelial tissue" EXACT [] synonym: "left lung epithelium" EXACT [] is_a: UBERON:0000115 ! lung epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002168 ! left lung -relationship: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung +relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003367 @@ -12851,9 +12853,9 @@ is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019306 ! nose epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002255 ! vomeronasal organ -relationship: BFO:0000050 UBERON:0002255 ! vomeronasal organ -relationship: RO:0002202 UBERON:0001997 ! olfactory epithelium +intersection_of: BFO:0000050 UBERON:0002255 ! part of vomeronasal organ +relationship: BFO:0000050 UBERON:0002255 ! part of vomeronasal organ +relationship: RO:0002202 UBERON:0001997 ! develops_from olfactory epithelium [Term] id: UBERON:0003371 @@ -12868,9 +12870,9 @@ synonym: "pelvic fin bud ectoderm" NARROW [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm -relationship: BFO:0000050 UBERON:0005420 ! pelvic appendage bud -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm +relationship: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0003372 @@ -12885,9 +12887,9 @@ synonym: "wing ectoderm" NARROW [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm -relationship: BFO:0000050 UBERON:0005419 ! pectoral appendage bud -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm +relationship: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0003373 @@ -12895,8 +12897,8 @@ name: ectoderm of footplate def: "An ectoderm that is part of a footplate." [] is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm -intersection_of: BFO:0000050 UBERON:0006871 ! embryonic footplate -relationship: BFO:0000050 UBERON:0006871 ! embryonic footplate +intersection_of: BFO:0000050 UBERON:0006871 ! part of embryonic footplate +relationship: BFO:0000050 UBERON:0006871 ! part of embryonic footplate [Term] id: UBERON:0003374 @@ -12907,10 +12909,10 @@ synonym: "chorion epithelium" RELATED [] synonym: "chorionic epithelium" RELATED [] is_a: UBERON:0000478 ! extraembryonic structure intersection_of: UBERON:0000478 ! extraembryonic structure -intersection_of: BFO:0000050 UBERON:0003124 ! chorion -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm -relationship: BFO:0000050 UBERON:0003124 ! chorion -relationship: RO:0002202 UBERON:0000924 ! ectoderm +intersection_of: BFO:0000050 UBERON:0003124 ! part of chorion +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm +relationship: BFO:0000050 UBERON:0003124 ! part of chorion +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0003381 @@ -12921,8 +12923,8 @@ synonym: "right ventricle cardiac muscle" RELATED [] synonym: "right ventricular cardiac muscle tissue" EXACT [] is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002080 ! heart right ventricle -relationship: BFO:0000050 UBERON:0002080 ! heart right ventricle +intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle +relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle [Term] id: UBERON:0003382 @@ -12933,8 +12935,8 @@ synonym: "left ventricle cardiac muscle" RELATED [] synonym: "left ventricular cardiac muscle tissue" EXACT [] is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002084 ! heart left ventricle -relationship: BFO:0000050 UBERON:0002084 ! heart left ventricle +intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle +relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0003383 @@ -12949,7 +12951,7 @@ synonym: "interventricular septum myocardium" EXACT [] is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum is_a: UBERON:0004667 ! interventricular septum muscular part intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002094 ! interventricular septum +intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum [Term] id: UBERON:0003384 @@ -12960,8 +12962,8 @@ synonym: "pharynx skeletal muscle tissue" EXACT [] synonym: "skeletal muscle tissue of pharynx" EXACT [] is_a: UBERON:0004830 ! respiratory system skeletal muscle intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0003386 @@ -12971,8 +12973,8 @@ synonym: "ocular smooth muscle" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0003387 @@ -12982,8 +12984,8 @@ synonym: "trachea smooth muscle" EXACT [] synonym: "tracheal smooth muscle" EXACT [] is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0003388 @@ -12998,8 +13000,8 @@ synonym: "pericardial cavity meso-epithelium" EXACT [] synonym: "pericardial cavity mesothelium" EXACT [] is_a: UBERON:0001136 ! mesothelium intersection_of: UBERON:0001136 ! mesothelium -intersection_of: BFO:0000050 UBERON:0002407 ! pericardium -relationship: BFO:0000050 UBERON:0002407 ! pericardium +intersection_of: BFO:0000050 UBERON:0002407 ! part of pericardium +relationship: BFO:0000050 UBERON:0002407 ! part of pericardium [Term] id: UBERON:0003393 @@ -13014,8 +13016,8 @@ synonym: "systema urinaria mesentery" EXACT [] synonym: "urinary system mesentery" EXACT [] is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000050 UBERON:0001008 ! renal system +intersection_of: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000050 UBERON:0001008 ! part of renal system [Term] id: UBERON:0003394 @@ -13024,8 +13026,8 @@ def: "A mesentery that is part of a hindgut [Automatically generated definition] synonym: "hindgut mesentery" EXACT [] is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001046 ! hindgut -relationship: BFO:0000050 UBERON:0001046 ! hindgut +intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut +relationship: BFO:0000050 UBERON:0001046 ! part of hindgut [Term] id: UBERON:0003395 @@ -13035,7 +13037,7 @@ synonym: "rectum mesentery" EXACT [] is_a: UBERON:0003334 ! serosa of rectum is_a: UBERON:0004854 ! gastrointestinal system mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003396 @@ -13050,7 +13052,7 @@ is_a: UBERON:0003335 ! serosa of colon is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 ! peritoneal mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0003397 @@ -13060,7 +13062,7 @@ synonym: "duodenum mesentery" EXACT [] is_a: UBERON:0001170 ! mesentery of small intestine is_a: UBERON:0003336 ! serosa of duodenum intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0003398 @@ -13072,7 +13074,7 @@ synonym: "mesojejunum" EXACT [] is_a: UBERON:0001170 ! mesentery of small intestine is_a: UBERON:0003337 ! serosa of jejunum intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum [Term] id: UBERON:0003406 @@ -13083,8 +13085,8 @@ synonym: "cartilage of apparatus respiratorius" EXACT [] synonym: "respiratory system cartilage" EXACT [] is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003408 @@ -13098,8 +13100,8 @@ synonym: "lower gastrointestinal tract gland" EXACT [] is_a: UBERON:0002530 ! gland is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0003409 @@ -13109,8 +13111,8 @@ synonym: "lingual gland" EXACT [] synonym: "tongue gland" EXACT [] is_a: UBERON:0010047 ! oral gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001723 ! tongue -relationship: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0003412 @@ -13123,9 +13125,9 @@ synonym: "mesoderm pelvic fin bud" NARROW [] synonym: "pelvic fin bud mesenchyme" NARROW [] is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005420 ! pelvic appendage bud -relationship: BFO:0000050 UBERON:0005420 ! pelvic appendage bud -relationship: RO:0002202 UBERON:0005730 ! pelvic appendage field +intersection_of: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud +relationship: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud +relationship: RO:0002202 UBERON:0005730 ! develops_from pelvic appendage field [Term] id: UBERON:0003413 @@ -13139,9 +13141,9 @@ synonym: "upper limb bud mesenchyme" NARROW [] synonym: "wing mesenchyme" NARROW [] is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005419 ! pectoral appendage bud -relationship: BFO:0000050 UBERON:0005419 ! pectoral appendage bud -relationship: RO:0002202 UBERON:0005729 ! pectoral appendage field +intersection_of: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud +relationship: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud +relationship: RO:0002202 UBERON:0005729 ! develops_from pectoral appendage field [Term] id: UBERON:0003416 @@ -13150,8 +13152,8 @@ def: "Mesenchyme that is part of a developing tongue [Automatically generated de synonym: "tongue mesenchyme" EXACT [] is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001723 ! tongue -relationship: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0003421 @@ -13164,9 +13166,9 @@ synonym: "vomeronasal organ mesenchyme" EXACT [] is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009891 ! facial mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002255 ! vomeronasal organ -relationship: BFO:0000050 UBERON:0002255 ! vomeronasal organ -relationship: RO:0002202 UBERON:0009204 ! medial nasal process mesenchyme +intersection_of: BFO:0000050 UBERON:0002255 ! part of vomeronasal organ +relationship: BFO:0000050 UBERON:0002255 ! part of vomeronasal organ +relationship: RO:0002202 UBERON:0009204 ! develops_from medial nasal process mesenchyme [Term] id: UBERON:0003422 @@ -13178,8 +13180,8 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002331 ! umbilical cord -relationship: BFO:0000050 UBERON:0002331 ! umbilical cord +intersection_of: BFO:0000050 UBERON:0002331 ! part of umbilical cord +relationship: BFO:0000050 UBERON:0002331 ! part of umbilical cord [Term] id: UBERON:0003426 @@ -13193,7 +13195,7 @@ synonym: "fatty tissue of dermis" EXACT [] is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003585 ! dermis connective tissue intersection_of: UBERON:0001013 ! adipose tissue -intersection_of: BFO:0000050 UBERON:0002067 ! dermis +intersection_of: BFO:0000050 UBERON:0002067 ! part of dermis [Term] id: UBERON:0003429 @@ -13202,8 +13204,8 @@ def: "A nerve that is part of an abdomen [Automatically generated definition]." synonym: "nerve of abdomen" EXACT [] is_a: UBERON:0003825 ! nerve of abdominal segment intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003431 @@ -13212,8 +13214,8 @@ def: "A nerve that is part of a leg [Automatically generated definition]." [] synonym: "nerve of leg" EXACT [] is_a: UBERON:0003442 ! hindlimb nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0000978 ! leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0003432 @@ -13228,8 +13230,8 @@ synonym: "nerve of chest" EXACT [] synonym: "nerve of front of thorax" EXACT [] is_a: UBERON:0003824 ! nerve of thoracic segment intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0001443 ! chest -relationship: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0003433 @@ -13240,8 +13242,8 @@ synonym: "nerve of arm" EXACT [] synonym: "nerve of brachial region" EXACT [] is_a: UBERON:0003441 ! forelimb nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0001460 ! arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0001460 ! part of arm [Term] id: UBERON:0003435 @@ -13263,8 +13265,8 @@ synonym: "terminal segment of free lower limb digit nerve" EXACT [] synonym: "toe nerve" EXACT [] is_a: UBERON:0003445 ! pes nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit [Term] id: UBERON:0003436 @@ -13273,8 +13275,8 @@ def: "A nerve that is part of a shoulder [Automatically generated definition]." synonym: "nerve of shoulder" EXACT [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0001467 ! shoulder +intersection_of: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder [Term] id: UBERON:0003439 @@ -13286,8 +13288,8 @@ synonym: "torso nerve" EXACT [] synonym: "trunk nerve" RELATED [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003440 @@ -13296,8 +13298,8 @@ def: "A nerve that is part of a limb [Automatically generated definition]." [] synonym: "nerve of limb" EXACT [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003441 @@ -13311,8 +13313,8 @@ synonym: "nerve of upper extremity" EXACT [] synonym: "wing nerve" NARROW [] is_a: UBERON:0003440 ! limb nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003442 @@ -13325,8 +13327,8 @@ synonym: "nerve of inferior member" EXACT [] synonym: "nerve of lower extremity" EXACT [] is_a: UBERON:0003440 ! limb nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003444 @@ -13335,8 +13337,8 @@ def: "A nerve that is part of a pelvis [Automatically generated definition]." [] synonym: "nerve of pelvis" EXACT [] is_a: UBERON:0003825 ! nerve of abdominal segment intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk +intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0003445 @@ -13346,8 +13348,8 @@ synonym: "foot nerve" EXACT [] synonym: "nerve of foot" EXACT [] is_a: UBERON:0003442 ! hindlimb nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0003447 @@ -13367,8 +13369,8 @@ synonym: "nerve of terminal segment of free upper limb digit" EXACT [] synonym: "terminal segment of free upper limb digit nerve" EXACT [] is_a: UBERON:0003448 ! manus nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit [Term] id: UBERON:0003448 @@ -13379,8 +13381,8 @@ synonym: "nerve of hand" EXACT [] synonym: "nerve of manus" EXACT [] is_a: UBERON:0003441 ! forelimb nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0003453 @@ -13392,8 +13394,8 @@ synonym: "solitary lymphatic follicle of large intestine" RELATED [] synonym: "solitary lymphoid follicle of subdivision of large intestine" RELATED [] is_a: UBERON:0001211 ! Peyer's patch intersection_of: UBERON:0001211 ! Peyer's patch -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0000059 ! large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0000059 ! part of large intestine [Term] id: UBERON:0003454 @@ -13408,8 +13410,8 @@ synonym: "small bowel Peyer's patch" EXACT [] synonym: "small intestine Peyer's patch" EXACT [] is_a: UBERON:0001211 ! Peyer's patch intersection_of: UBERON:0001211 ! Peyer's patch -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001204 ! mucosa of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001204 ! part of mucosa of small intestine [Term] id: UBERON:0003455 @@ -13419,8 +13421,8 @@ synonym: "kidney inner medulla loop of Henle" EXACT [] synonym: "loop of Henle, inner medullary portion" EXACT [] is_a: UBERON:0034997 ! renal medulla loop of Henle intersection_of: UBERON:0001288 ! loop of Henle -intersection_of: BFO:0000050 UBERON:0001294 ! inner medulla of kidney -relationship: BFO:0000050 UBERON:0001294 ! inner medulla of kidney +intersection_of: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney +relationship: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney [Term] id: UBERON:0003456 @@ -13435,8 +13437,8 @@ synonym: "lymphatic vessel of respiratory system" EXACT [] synonym: "respiratory system lymph vessel" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003457 @@ -13452,8 +13454,8 @@ synonym: "craniofacial bone" RELATED [] synonym: "head bone organ" EXACT [] is_a: UBERON:0007914 ! bone of craniocervical region intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0003459 @@ -13477,7 +13479,7 @@ synonym: "front of thorax bone organ" EXACT [] is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0005175 ! chest organ intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0003460 @@ -13489,8 +13491,8 @@ synonym: "bone of upper extremity" RELATED [] synonym: "bone organ of arm" EXACT [] is_a: UBERON:0008962 ! forelimb bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0001460 ! arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0001460 ! part of arm [Term] id: UBERON:0003461 @@ -13499,7 +13501,7 @@ def: "A bone that is connected via a shoulder joint (i.e. glenohumeral or acromi synonym: "bone of shoulder" EXACT [] synonym: "shoulder-articulating bone" EXACT [] is_a: UBERON:0010741 ! bone of pectoral complex -relationship: BFO:0000050 UBERON:0012475 ! skeleton of pectoral complex +relationship: BFO:0000050 UBERON:0012475 ! part of skeleton of pectoral complex [Term] id: UBERON:0003462 @@ -13513,8 +13515,8 @@ synonym: "viscerocranium bone" RELATED [] is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0011156 ! facial skeleton -relationship: BFO:0000050 UBERON:0011156 ! facial skeleton +intersection_of: BFO:0000050 UBERON:0011156 ! part of facial skeleton +relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton [Term] id: UBERON:0003463 @@ -13530,7 +13532,7 @@ synonym: "trunk bone organ" EXACT [] is_a: UBERON:0001474 ! bone element is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003464 @@ -13550,8 +13552,8 @@ is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: RO:0002202 UBERON:0010885 ! hindlimb cartilage element +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: RO:0002202 UBERON:0010885 ! develops_from hindlimb cartilage element [Term] id: UBERON:0003469 @@ -13560,7 +13562,7 @@ def: "An artery that is part of a respiratory system [Automatically generated de is_a: UBERON:0001637 ! artery is_a: UBERON:0003643 ! respiratory system arterial blood vessel intersection_of: UBERON:0001637 ! artery -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003475 @@ -13571,8 +13573,8 @@ synonym: "vein of ureter" EXACT [] is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0000056 ! ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0000056 ! part of ureter [Term] id: UBERON:0003476 @@ -13594,8 +13596,8 @@ synonym: "thymus gland lymphoid tissue" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001744 ! lymphoid tissue intersection_of: UBERON:0001744 ! lymphoid tissue -intersection_of: BFO:0000050 UBERON:0002370 ! thymus -relationship: BFO:0000050 UBERON:0002370 ! thymus +intersection_of: BFO:0000050 UBERON:0002370 ! part of thymus +relationship: BFO:0000050 UBERON:0002370 ! part of thymus [Term] id: UBERON:0003484 @@ -13608,7 +13610,7 @@ synonym: "vertebrate eye sebaceous gland" EXACT [] is_a: UBERON:0003487 ! skin sebaceous gland is_a: UBERON:0003605 ! eye skin gland intersection_of: UBERON:0001821 ! sebaceous gland -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0003485 @@ -13619,8 +13621,8 @@ is_a: UBERON:0001821 ! sebaceous gland is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0001821 ! sebaceous gland -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0003487 @@ -13629,7 +13631,7 @@ def: "A holocrine gland of the dermis that secretes sebum into hair follicles." synonym: "cutaneous sebaceous gland" EXACT [] synonym: "sebaceous gland of skin" EXACT [] is_a: UBERON:0001821 ! sebaceous gland -relationship: BFO:0000050 UBERON:0011932 ! pilosebaceous unit +relationship: BFO:0000050 UBERON:0011932 ! part of pilosebaceous unit [Term] id: UBERON:0003488 @@ -13646,7 +13648,7 @@ synonym: "mammary gland of abdomen" EXACT [] is_a: UBERON:0001911 ! mammary gland is_a: UBERON:0005172 ! abdomen element intersection_of: UBERON:0001911 ! mammary gland -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003489 @@ -13678,9 +13680,9 @@ synonym: "respiratory system endothelium of capillary vessel" EXACT [] is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0001915 ! endothelium of capillary -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003504 ! respiratory system blood vessel -relationship: BFO:0000050 UBERON:0003526 ! respiratory system capillary +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel +relationship: BFO:0000050 UBERON:0003526 ! part of respiratory system capillary [Term] id: UBERON:0003494 @@ -13692,7 +13694,7 @@ synonym: "venule of respiratory system" EXACT [] is_a: UBERON:0001979 ! venule is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001979 ! venule -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003495 @@ -13701,8 +13703,8 @@ def: "An arteriole that is part of a respiratory system [Automatically generated is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003643 ! respiratory system arterial blood vessel intersection_of: UBERON:0001980 ! arteriole -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003469 ! respiratory system artery +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003469 ! part of respiratory system artery [Term] id: UBERON:0003496 @@ -13713,8 +13715,8 @@ synonym: "blood vessel of adult head" EXACT [] synonym: "blood vessel of head" EXACT [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0011362 ! cranial blood vasculature +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0011362 ! part of cranial blood vasculature [Term] id: UBERON:0003497 @@ -13723,8 +13725,8 @@ def: "A blood vessel that is part of an abdomen [Automatically generated definit synonym: "blood vessel of abdomen" EXACT [] is_a: UBERON:0003835 ! abdominal segment blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003498 @@ -13735,8 +13737,8 @@ synonym: "cardiac blood vessel" RELATED [] is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0005985 ! coronary vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0018674 ! heart vasculature +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0018674 ! part of heart vasculature [Term] id: UBERON:0003499 @@ -13746,8 +13748,8 @@ synonym: "blood vessel of brain" EXACT [] is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0008998 ! vasculature of brain +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0008998 ! part of vasculature of brain [Term] id: UBERON:0003500 @@ -13758,8 +13760,8 @@ synonym: "cornea blood vessel" EXACT [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000964 ! cornea -relationship: BFO:0000050 UBERON:0000964 ! cornea +intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea +relationship: BFO:0000050 UBERON:0000964 ! part of cornea [Term] id: UBERON:0003501 @@ -13774,8 +13776,8 @@ synonym: "tunica interna of eyeball blood vessel" EXACT [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000966 ! retina -relationship: BFO:0000050 UBERON:0004864 ! vasculature of retina +intersection_of: BFO:0000050 UBERON:0000966 ! part of retina +relationship: BFO:0000050 UBERON:0004864 ! part of vasculature of retina [Term] id: UBERON:0003503 @@ -13784,8 +13786,8 @@ def: "A blood vessel that is part of a leg [Automatically generated definition]. synonym: "blood vessel of leg" EXACT [] is_a: UBERON:0003516 ! hindlimb blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0000978 ! leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0003504 @@ -13796,8 +13798,8 @@ synonym: "blood vessel of apparatus respiratorius" EXACT [] synonym: "blood vessel of respiratory system" EXACT [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003505 @@ -13807,8 +13809,8 @@ synonym: "blood vessel of trachea" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0003506 @@ -13823,8 +13825,8 @@ synonym: "blood vessel of front of thorax" EXACT [] synonym: "front of thorax blood vessel" EXACT [] is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001443 ! chest -relationship: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0003507 @@ -13833,8 +13835,8 @@ def: "A blood vessel that is part of an arm [Automatically generated definition] synonym: "blood vessel of arm" EXACT [] is_a: UBERON:0003515 ! forelimb blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0001460 ! arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0001460 ! part of arm [Term] id: UBERON:0003508 @@ -13856,8 +13858,8 @@ synonym: "terminal segment of free lower limb digit blood vessel" EXACT [] synonym: "toe blood vessel" EXACT [] is_a: UBERON:0003521 ! pes blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit [Term] id: UBERON:0003509 @@ -13865,8 +13867,8 @@ name: arterial blood vessel def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0004572 ! arterial system -relationship: BFO:0000050 UBERON:0004572 ! arterial system +intersection_of: BFO:0000050 UBERON:0004572 ! part of arterial system +relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0003510 @@ -13878,8 +13880,8 @@ synonym: "blood vessel of eyelid" EXACT [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid -relationship: BFO:0000050 UBERON:0001711 ! eyelid +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: BFO:0000050 UBERON:0001711 ! part of eyelid [Term] id: UBERON:0003511 @@ -13889,8 +13891,8 @@ synonym: "blood vessel of iris" EXACT [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: BFO:0000050 UBERON:0004118 ! vasculature of iris +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: BFO:0000050 UBERON:0004118 ! part of vasculature of iris [Term] id: UBERON:0003512 @@ -13902,8 +13904,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0003513 @@ -13914,8 +13916,8 @@ synonym: "blood vessel of trunk" EXACT [] synonym: "torso blood vessel" EXACT [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003514 @@ -13924,8 +13926,8 @@ def: "A blood vessel that is part of a limb [Automatically generated definition] synonym: "blood vessel of limb" EXACT [] is_a: UBERON:0007301 ! appendage blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003515 @@ -13941,8 +13943,8 @@ synonym: "wing blood vessel" NARROW [] is_a: UBERON:0003514 ! limb blood vessel is_a: UBERON:0007300 ! pectoral appendage blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003516 @@ -13954,8 +13956,8 @@ synonym: "blood vessel of lower extremity" EXACT [] synonym: "hind limb blood vessel" EXACT [] is_a: UBERON:0003514 ! limb blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003517 @@ -13965,8 +13967,8 @@ synonym: "blood vessel of kidney" EXACT [] synonym: "renal blood vessel" EXACT [] is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0006544 ! kidney vasculature +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0006544 ! part of kidney vasculature [Term] id: UBERON:0003519 @@ -13990,8 +13992,8 @@ def: "A blood vessel that is part of a pelvis [Automatically generated definitio synonym: "blood vessel of pelvis" EXACT [] is_a: UBERON:0003835 ! abdominal segment blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk +intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0003521 @@ -14001,8 +14003,8 @@ synonym: "blood vessel of foot" EXACT [] synonym: "foot blood vessel" EXACT [] is_a: UBERON:0003516 ! hindlimb blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0003522 @@ -14017,8 +14019,8 @@ synonym: "hand digit blood vessel" NARROW [] synonym: "terminal segment of free upper limb digit blood vessel" EXACT [] is_a: UBERON:0003523 ! manus blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit [Term] id: UBERON:0003523 @@ -14029,8 +14031,8 @@ synonym: "blood vessel of manus" EXACT [] synonym: "hand blood vessel" EXACT [] is_a: UBERON:0003515 ! forelimb blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0003526 @@ -14050,7 +14052,7 @@ synonym: "respiratory system capillary vessel" EXACT [] is_a: UBERON:0001982 ! capillary is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001982 ! capillary -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003527 @@ -14065,8 +14067,8 @@ synonym: "renal capillary" EXACT [] is_a: UBERON:0001982 ! capillary is_a: UBERON:0003517 ! kidney blood vessel intersection_of: UBERON:0001982 ! capillary -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0006544 ! kidney vasculature +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0006544 ! part of kidney vasculature [Term] id: UBERON:0003528 @@ -14079,8 +14081,8 @@ synonym: "grey matter of brain" EXACT [] synonym: "grey substance of brain" EXACT [] is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0000955 ! brain +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0003529 @@ -14101,8 +14103,8 @@ synonym: "respiratory system lymphatic vessel endothelium" EXACT [] is_a: UBERON:0002042 ! lymphatic vessel endothelium is_a: UBERON:0004807 ! respiratory system epithelium intersection_of: UBERON:0002042 ! lymphatic vessel endothelium -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003456 ! respiratory system lymphatic vessel +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003456 ! part of respiratory system lymphatic vessel [Term] id: UBERON:0003530 @@ -14125,8 +14127,8 @@ synonym: "toe skin" EXACT [] is_a: UBERON:0001513 ! skin of pes is_a: UBERON:0015249 ! digit skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit [Term] id: UBERON:0003531 @@ -14141,8 +14143,8 @@ synonym: "upper limb skin" EXACT [] synonym: "wing skin" NARROW [] is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003532 @@ -14156,8 +14158,8 @@ synonym: "skin of lower extremity" EXACT [] synonym: "skin of lower limb" EXACT [] is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003533 @@ -14180,8 +14182,8 @@ synonym: "terminal segment of free upper limb digit skin" EXACT [] is_a: UBERON:0001519 ! skin of manus is_a: UBERON:0015249 ! digit skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit [Term] id: UBERON:0003538 @@ -14192,8 +14194,8 @@ synonym: "lobular bronchiole of right lung" EXACT [] synonym: "right lung lobular bronchiole" EXACT [] is_a: UBERON:0002186 ! bronchiole intersection_of: UBERON:0002186 ! bronchiole -intersection_of: BFO:0000050 UBERON:0002167 ! right lung -relationship: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung +relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003539 @@ -14204,8 +14206,8 @@ synonym: "left lung lobular bronchiole" EXACT [] synonym: "lobular bronchiole of left lung" EXACT [] is_a: UBERON:0002186 ! bronchiole intersection_of: UBERON:0002186 ! bronchiole -intersection_of: BFO:0000050 UBERON:0002168 ! left lung -relationship: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung +relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003540 @@ -14217,7 +14219,7 @@ synonym: "terminal bronchiole of right lung" EXACT [] is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003538 ! right lung bronchiole intersection_of: UBERON:0002187 ! terminal bronchiole -intersection_of: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003541 @@ -14229,7 +14231,7 @@ synonym: "terminal bronchiole of left lung" EXACT [] is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003539 ! left lung bronchiole intersection_of: UBERON:0002187 ! terminal bronchiole -intersection_of: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003542 @@ -14241,7 +14243,7 @@ synonym: "right lung bronchiolus respiratorius" EXACT [] is_a: UBERON:0002188 ! respiratory bronchiole is_a: UBERON:0003538 ! right lung bronchiole intersection_of: UBERON:0002188 ! respiratory bronchiole -intersection_of: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003543 @@ -14253,7 +14255,7 @@ synonym: "respiratory bronchiole of left lung" EXACT [] is_a: UBERON:0002188 ! respiratory bronchiole is_a: UBERON:0003539 ! left lung bronchiole intersection_of: UBERON:0002188 ! respiratory bronchiole -intersection_of: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003544 @@ -14266,8 +14268,8 @@ synonym: "white matter of neuraxis of brain" EXACT [] synonym: "white substance of brain" EXACT [] is_a: UBERON:0002316 ! white matter intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0000955 ! brain +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0003546 @@ -14276,9 +14278,9 @@ def: "A macula densa that is part of a distal convoluted tubule [Automatically g is_a: UBERON:0002335 ! macula densa is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002335 ! macula densa -intersection_of: BFO:0000050 UBERON:0001292 ! distal convoluted tubule -relationship: BFO:0000050 UBERON:0001292 ! distal convoluted tubule -relationship: BFO:0000050 UBERON:0002335 ! macula densa +intersection_of: BFO:0000050 UBERON:0001292 ! part of distal convoluted tubule +relationship: BFO:0000050 UBERON:0001292 ! part of distal convoluted tubule +relationship: BFO:0000050 UBERON:0002335 ! part of macula densa [Term] id: UBERON:0003547 @@ -14289,8 +14291,8 @@ synonym: "meninges of brain" EXACT [] synonym: "meninx of brain" EXACT [] is_a: UBERON:0002360 ! meninx intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0000955 ! brain +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0003548 @@ -14301,8 +14303,8 @@ synonym: "meninges of forebrain" EXACT [] synonym: "meninx of forebrain" EXACT [] is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx -intersection_of: BFO:0000050 UBERON:0001890 ! forebrain -relationship: BFO:0000050 UBERON:0001890 ! forebrain +intersection_of: BFO:0000050 UBERON:0001890 ! part of forebrain +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain [Term] id: UBERON:0003561 @@ -14314,7 +14316,7 @@ synonym: "forebrain dura mater of neuraxis" EXACT [] is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003548 ! forebrain meninges intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0001890 ! forebrain +intersection_of: BFO:0000050 UBERON:0001890 ! part of forebrain [Term] id: UBERON:0003562 @@ -14327,7 +14329,7 @@ synonym: "midbrain dura mater of neuraxis" EXACT [] is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003288 ! meninx of midbrain intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0001891 ! midbrain +intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0003563 @@ -14339,7 +14341,7 @@ synonym: "telencephalon dura mater of neuraxis" EXACT [] is_a: UBERON:0003289 ! meninx of telencephalon is_a: UBERON:0003561 ! forebrain dura mater intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0003564 @@ -14363,7 +14365,7 @@ synonym: "mature diencephalon dura mater of neuraxis" EXACT [] is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003561 ! forebrain dura mater intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0003565 @@ -14376,7 +14378,7 @@ synonym: "rhombencephalon dura mater" RELATED [] is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003291 ! meninx of hindbrain intersection_of: UBERON:0002363 ! dura mater -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0003566 @@ -14395,9 +14397,9 @@ synonym: "textus connectivus of adult head" EXACT [] synonym: "textus connectivus of head" EXACT [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: RO:0002202 UBERON:0005253 ! head mesenchyme +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: RO:0002202 UBERON:0005253 ! develops_from head mesenchyme [Term] id: UBERON:0003567 @@ -14410,8 +14412,8 @@ synonym: "portion of connective tissue of abdomen" EXACT [] synonym: "textus connectivus of abdomen" EXACT [] is_a: UBERON:0003838 ! abdominal segment connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003569 @@ -14424,8 +14426,8 @@ synonym: "portion of connective tissue of leg" EXACT [] synonym: "textus connectivus of leg" EXACT [] is_a: UBERON:0003589 ! hindlimb connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0000978 ! leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0003570 @@ -14444,8 +14446,8 @@ synonym: "textus connectivus of apparatus respiratorius" EXACT [] synonym: "textus connectivus of respiratory system" EXACT [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003571 @@ -14456,9 +14458,9 @@ synonym: "connective tissue of windpipe" EXACT [] is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea -relationship: RO:0002202 UBERON:0009505 ! mesenchyme of trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: RO:0002202 UBERON:0009505 ! develops_from mesenchyme of trachea [Term] id: UBERON:0003572 @@ -14489,8 +14491,8 @@ synonym: "textus connectivus of chest" EXACT [] synonym: "textus connectivus of front of thorax" EXACT [] is_a: UBERON:0003837 ! thoracic segment connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001443 ! chest -relationship: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0003573 @@ -14498,8 +14500,8 @@ name: arm connective tissue def: "A portion of connective tissue that is part of an arm [Automatically generated definition]." [] is_a: UBERON:0003588 ! forelimb connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0001460 ! arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0001460 ! part of arm [Term] id: UBERON:0003576 @@ -14510,9 +14512,9 @@ synonym: "connective tissue of hip region" EXACT [] synonym: "connective tissue of regio coxae" EXACT [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001464 ! hip -relationship: BFO:0000050 UBERON:0001464 ! hip -relationship: RO:0002202 UBERON:0003320 ! mesenchyme of hip +intersection_of: BFO:0000050 UBERON:0001464 ! part of hip +relationship: BFO:0000050 UBERON:0001464 ! part of hip +relationship: RO:0002202 UBERON:0003320 ! develops_from mesenchyme of hip [Term] id: UBERON:0003577 @@ -14522,9 +14524,9 @@ synonym: "connective tissue of knee" EXACT [] synonym: "knee portion of connective tissue" EXACT [] is_a: UBERON:0003569 ! leg connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001465 ! knee -relationship: BFO:0000050 UBERON:0001465 ! knee -relationship: RO:0002202 UBERON:0003321 ! mesenchyme of knee +intersection_of: BFO:0000050 UBERON:0001465 ! part of knee +relationship: BFO:0000050 UBERON:0001465 ! part of knee +relationship: RO:0002202 UBERON:0003321 ! develops_from mesenchyme of knee [Term] id: UBERON:0003578 @@ -14541,9 +14543,9 @@ synonym: "hind limb digit connective tissue" EXACT [] is_a: UBERON:0003595 ! pes connective tissue is_a: UBERON:0015791 ! digit connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: RO:0002202 UBERON:0005255 ! pedal digit mesenchyme +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: RO:0002202 UBERON:0005255 ! develops_from pedal digit mesenchyme [Term] id: UBERON:0003579 @@ -14556,9 +14558,9 @@ synonym: "shoulder textus connectivus" EXACT [] synonym: "textus connectivus of shoulder" EXACT [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0001467 ! shoulder -relationship: RO:0002202 UBERON:0003322 ! mesenchyme of shoulder +intersection_of: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: RO:0002202 UBERON:0003322 ! develops_from mesenchyme of shoulder [Term] id: UBERON:0003580 @@ -14572,8 +14574,8 @@ synonym: "textus connectivus of lower respiratory tract" EXACT [] is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract +intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0003581 @@ -14585,9 +14587,9 @@ synonym: "connective tissue of eyelid" EXACT [] is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid -relationship: BFO:0000050 UBERON:0001711 ! eyelid -relationship: RO:0002202 UBERON:0010330 ! eyelid mesenchyme +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: RO:0002202 UBERON:0010330 ! develops_from eyelid mesenchyme [Term] id: UBERON:0003582 @@ -14613,8 +14615,8 @@ synonym: "textus connectivus of rhinopharynx" EXACT [] is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001728 ! nasopharynx -relationship: BFO:0000050 UBERON:0001728 ! nasopharynx +intersection_of: BFO:0000050 UBERON:0001728 ! part of nasopharynx +relationship: BFO:0000050 UBERON:0001728 ! part of nasopharynx [Term] id: UBERON:0003584 @@ -14633,9 +14635,9 @@ synonym: "stroma of lactiferous gland" EXACT [] is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: RO:0002202 UBERON:0003326 ! mesenchyme of mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: RO:0002202 UBERON:0003326 ! develops_from mesenchyme of mammary gland [Term] id: UBERON:0003585 @@ -14649,9 +14651,9 @@ synonym: "textus connectivus of dermis" EXACT [] is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002067 ! dermis -relationship: BFO:0000050 UBERON:0002067 ! dermis -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: BFO:0000050 UBERON:0002067 ! part of dermis +relationship: BFO:0000050 UBERON:0002067 ! part of dermis +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0003586 @@ -14670,8 +14672,8 @@ synonym: "trunk portion of connective tissue" EXACT [] synonym: "trunk textus connectivus" EXACT [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003587 @@ -14684,9 +14686,9 @@ synonym: "portion of connective tissue of limb" EXACT [] synonym: "textus connectivus of limb" EXACT [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb -relationship: RO:0002202 UBERON:0009749 ! limb mesenchyme +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb +relationship: RO:0002202 UBERON:0009749 ! develops_from limb mesenchyme [Term] id: UBERON:0003588 @@ -14700,9 +14702,9 @@ synonym: "connective tissue of upper extremity" EXACT [] synonym: "wing connective tissue" NARROW [] is_a: UBERON:0003587 ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb -relationship: RO:0002202 UBERON:0003859 ! forelimb mesenchyme +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: RO:0002202 UBERON:0003859 ! develops_from forelimb mesenchyme [Term] id: UBERON:0003589 @@ -14715,9 +14717,9 @@ synonym: "connective tissue of lower extremity" EXACT [] synonym: "hind limb connective tissue" EXACT [] is_a: UBERON:0003587 ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: RO:0002202 UBERON:0003860 ! hindlimb mesenchyme +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: RO:0002202 UBERON:0003860 ! develops_from hindlimb mesenchyme [Term] id: UBERON:0003592 @@ -14744,8 +14746,8 @@ synonym: "textus connectivus of bronchial trunk" EXACT [] synonym: "textus connectivus of bronchus" EXACT [] is_a: UBERON:0003580 ! lower respiratory tract connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0003594 @@ -14758,8 +14760,8 @@ synonym: "portion of connective tissue of pelvis" EXACT [] synonym: "textus connectivus of pelvis" EXACT [] is_a: UBERON:0003838 ! abdominal segment connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk +intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0003595 @@ -14772,9 +14774,9 @@ synonym: "textus connectivus of pes" EXACT [] is_a: UBERON:0003589 ! hindlimb connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes -relationship: RO:0002202 UBERON:0003328 ! mesenchyme of footplate +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes +relationship: RO:0002202 UBERON:0003328 ! develops_from mesenchyme of footplate [Term] id: UBERON:0003597 @@ -14790,9 +14792,9 @@ synonym: "hand digit connective tissue" NARROW [] is_a: UBERON:0003598 ! manus connective tissue is_a: UBERON:0015791 ! digit connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit -relationship: RO:0002202 UBERON:0005257 ! manual digit mesenchyme +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: RO:0002202 UBERON:0005257 ! develops_from manual digit mesenchyme [Term] id: UBERON:0003598 @@ -14804,9 +14806,9 @@ synonym: "hand connective tissue" EXACT [] is_a: UBERON:0003588 ! forelimb connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus -relationship: RO:0002202 UBERON:0009523 ! mesenchyme of handplate +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus +relationship: RO:0002202 UBERON:0009523 ! develops_from mesenchyme of handplate [Term] id: UBERON:0003603 @@ -14816,8 +14818,8 @@ synonym: "cartilage of lower respiratory tract" EXACT [] is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract +intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0003604 @@ -14838,9 +14840,9 @@ synonym: "windpipe cartilage" EXACT [] is_a: UBERON:0003603 ! lower respiratory tract cartilage is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea -relationship: RO:0002202 UBERON:0007267 ! trachea pre-cartilage rings +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: RO:0002202 UBERON:0007267 ! develops_from trachea pre-cartilage rings [Term] id: UBERON:0003605 @@ -14862,8 +14864,8 @@ is_a: UBERON:0002419 ! skin gland is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015152 ! gland of ocular region intersection_of: UBERON:0002419 ! skin gland -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0003606 @@ -14873,7 +14875,7 @@ synonym: "long bone of limb" EXACT [] is_a: UBERON:0002428 ! limb bone is_a: UBERON:0002495 ! long bone intersection_of: UBERON:0002495 ! long bone -intersection_of: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003607 @@ -14892,7 +14894,7 @@ synonym: "wing long bone" NARROW [] is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0008962 ! forelimb bone intersection_of: UBERON:0002495 ! long bone -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003608 @@ -14908,7 +14910,7 @@ synonym: "lower extremity long bone" EXACT [] is_a: UBERON:0003464 ! hindlimb bone is_a: UBERON:0003606 ! limb long bone intersection_of: UBERON:0002495 ! long bone -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003609 @@ -14941,8 +14943,8 @@ synonym: "trunk of aortic tree elastic tissue" EXACT [] synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [] is_a: UBERON:0003614 ! blood vessel elastic tissue intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0000947 ! aorta +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0003610 @@ -14958,8 +14960,8 @@ is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0003611 @@ -14979,8 +14981,8 @@ synonym: "textus connectivus elasticus of respiratory system" EXACT [] is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0003570 ! respiratory system connective tissue intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0004777 ! respiratory system submucosa +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0004777 ! part of respiratory system submucosa [Term] id: UBERON:0003613 @@ -14999,8 +15001,8 @@ synonym: "textus connectivus elasticus of cardiovascular system" EXACT [] synonym: "textus connectivus elasticus of circulatory system" EXACT [] is_a: UBERON:0002521 ! elastic tissue intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0001009 ! circulatory system -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system +intersection_of: BFO:0000050 UBERON:0001009 ! part of circulatory system +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0003614 @@ -15019,8 +15021,8 @@ synonym: "vascular elastic tissue" EXACT [] is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0001981 ! blood vessel +intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel +relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel [Term] id: UBERON:0003615 @@ -15035,7 +15037,7 @@ synonym: "textus connectivus elasticus of lung" EXACT [] is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0003616 @@ -15061,8 +15063,8 @@ synonym: "textus connectivus elasticus of bronchus" EXACT [] is_a: UBERON:0003592 ! bronchus connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0001957 ! submucosa of bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0001957 ! part of submucosa of bronchus [Term] id: UBERON:0003617 @@ -15089,8 +15091,8 @@ synonym: "windpipe textus connectivus elasticus" EXACT [] is_a: UBERON:0003571 ! trachea connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0002202 ! submucosa of trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0002202 ! part of submucosa of trachea [Term] id: UBERON:0003619 @@ -15106,8 +15108,8 @@ synonym: "tunica intima of trunk of aortic tree" EXACT [] is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0004797 ! blood vessel layer intersection_of: UBERON:0002523 ! tunica intima -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0004663 ! aorta wall +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0004663 ! part of aorta wall [Term] id: UBERON:0003643 @@ -15116,7 +15118,7 @@ def: "An arterial blood vessel that is part of a respiratory system [Automatical is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003509 ! arterial blood vessel intersection_of: UBERON:0003509 ! arterial blood vessel -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003644 @@ -15126,7 +15128,7 @@ synonym: "kidney arterial system" RELATED [] is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0003517 ! kidney blood vessel intersection_of: UBERON:0003509 ! arterial blood vessel -intersection_of: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0003657 @@ -15137,8 +15139,8 @@ synonym: "joint of limb skeletal system" EXACT [] synonym: "skeletal limb joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003658 @@ -15152,9 +15154,9 @@ synonym: "muscle organ of regio coxae" EXACT [] synonym: "regio coxae muscle organ" EXACT [] is_a: UBERON:0010890 ! pelvic complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001464 ! hip -relationship: BFO:0000050 UBERON:0001464 ! hip -relationship: BFO:0000050 UBERON:0004475 ! musculature of hip +intersection_of: BFO:0000050 UBERON:0001464 ! part of hip +relationship: BFO:0000050 UBERON:0001464 ! part of hip +relationship: BFO:0000050 UBERON:0004475 ! part of musculature of hip [Term] id: UBERON:0003659 @@ -15177,8 +15179,8 @@ synonym: "terminal segment of free lower limb digit muscle organ" EXACT [] synonym: "toe muscle organ" EXACT [] is_a: UBERON:0001498 ! muscle of pes intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit [Term] id: UBERON:0003661 @@ -15189,9 +15191,9 @@ synonym: "limb skeletal muscle" EXACT [] synonym: "muscle organ of limb" EXACT [] is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0004480 ! musculature of limb -relationship: BFO:0000051 UBERON:0001134 ! skeletal muscle tissue +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0004480 ! part of musculature of limb +relationship: BFO:0000051 UBERON:0001134 ! has part skeletal muscle tissue [Term] id: UBERON:0003662 @@ -15210,8 +15212,8 @@ synonym: "wing muscle" NARROW [] is_a: UBERON:0003661 ! limb muscle is_a: UBERON:0014794 ! pectoral appendage muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0004481 ! musculature of upper limb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0004481 ! part of musculature of upper limb [Term] id: UBERON:0003663 @@ -15232,8 +15234,8 @@ synonym: "muscle organ of lower extremity" EXACT [] is_a: UBERON:0003661 ! limb muscle is_a: UBERON:0014795 ! pelvic appendage muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0004482 ! musculature of lower limb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0004482 ! part of musculature of lower limb [Term] id: UBERON:0003664 @@ -15256,8 +15258,8 @@ synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [] synonym: "terminal segment of free upper limb digit muscle organ" EXACT [] is_a: UBERON:0001500 ! muscle of manus intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit [Term] id: UBERON:0003672 @@ -15270,8 +15272,8 @@ synonym: "teeth" EXACT [] synonym: "teeth" RELATED [] synonym: "teeth set" EXACT [] is_a: UBERON:0034925 ! anatomical collection -relationship: BFO:0000050 UBERON:0010323 ! cranial skeletal system -relationship: BFO:0000051 UBERON:0001091 ! calcareous tooth +relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system +relationship: BFO:0000051 UBERON:0001091 ! has part calcareous tooth [Term] id: UBERON:0003685 @@ -15284,8 +15286,8 @@ synonym: "suture joint of skull" EXACT [] synonym: "suture of cranium" EXACT [] is_a: UBERON:0009198 ! craniofacial suture intersection_of: UBERON:0002209 ! fibrous joint -intersection_of: BFO:0000050 UBERON:0003128 ! cranium -relationship: BFO:0000050 UBERON:0003128 ! cranium +intersection_of: BFO:0000050 UBERON:0003128 ! part of cranium +relationship: BFO:0000050 UBERON:0003128 ! part of cranium [Term] id: UBERON:0003688 @@ -15293,7 +15295,7 @@ name: omentum def: "A fold of peritoneum originating at the stomach and supporting the viscera." [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ -relationship: BFO:0000050 UBERON:0001178 ! visceral peritoneum +relationship: BFO:0000050 UBERON:0001178 ! part of visceral peritoneum [Term] id: UBERON:0003697 @@ -15307,8 +15309,8 @@ synonym: "wall of abdomen" EXACT [] synonym: "wall of abdomen proper" EXACT [] is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003703 @@ -15326,8 +15328,8 @@ synonym: "bile duct intrahepatic part" EXACT [] synonym: "intrahepatic biliary system" RELATED [] is_a: UBERON:0002394 ! bile duct intersection_of: UBERON:0002394 ! bile duct -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0002107 ! liver +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0003714 @@ -15338,7 +15340,7 @@ synonym: "nervous tissue" EXACT [] synonym: "portion of neural tissue" EXACT [] is_a: UBERON:0000479 ! tissue disjoint_from: UBERON:0004755 ! skeletal tissue -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0003729 @@ -15358,8 +15360,8 @@ synonym: "tunica mucosa oris" EXACT [] synonym: "tunica mucosa oris" RELATED [] is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000165 ! mouth -relationship: BFO:0000050 UBERON:0000165 ! mouth +intersection_of: BFO:0000050 UBERON:0000165 ! part of mouth +relationship: BFO:0000050 UBERON:0000165 ! part of mouth [Term] id: UBERON:0003820 @@ -15371,7 +15373,7 @@ synonym: "prostate primordium" RELATED [] synonym: "prostatic bud" EXACT [] is_a: UBERON:0004902 ! urogenital sinus epithelium is_a: UBERON:0005153 ! epithelial bud -relationship: RO:0002202 UBERON:0009847 ! prostate field +relationship: RO:0002202 UBERON:0009847 ! develops_from prostate field [Term] id: UBERON:0003822 @@ -15393,9 +15395,9 @@ synonym: "wing stylopod" NARROW [] is_a: UBERON:0002472 ! stylopod is_a: UBERON:0008785 ! upper limb segment intersection_of: UBERON:0002472 ! stylopod -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000051 UBERON:0015053 ! humerus endochondral element +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000051 UBERON:0015053 ! has part humerus endochondral element [Term] id: UBERON:0003824 @@ -15407,8 +15409,8 @@ synonym: "thorax nerve" EXACT [] synonym: "upper body nerve" RELATED [] is_a: UBERON:0003439 ! nerve of trunk region intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003825 @@ -15417,8 +15419,8 @@ def: "A nerve that is part of an abdominal segment of trunk [Automatically gener synonym: "abdominal segment nerve" EXACT [] is_a: UBERON:0003439 ! nerve of trunk region intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003826 @@ -15427,8 +15429,8 @@ def: "A bone that is part of a hindlimb stylopod [Automatically generated defini synonym: "femur" RELATED [] is_a: UBERON:0005893 ! leg bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0003827 @@ -15442,7 +15444,7 @@ synonym: "upper body bone" RELATED [] is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003828 @@ -15455,7 +15457,7 @@ synonym: "bone organ of abdominal segment of trunk" EXACT [] is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003829 @@ -15465,8 +15467,8 @@ synonym: "urethral muscle layer" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0005090 ! muscle structure -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0003830 @@ -15478,8 +15480,8 @@ synonym: "upper body muscle" RELATED [] is_a: UBERON:0001774 ! skeletal muscle of trunk is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0004464 ! musculature of thorax +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0004464 ! part of musculature of thorax [Term] id: UBERON:0003831 @@ -15491,8 +15493,8 @@ synonym: "muscle organ of respiratory system" EXACT [] synonym: "respiratory system muscle organ" EXACT [] is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003832 @@ -15509,8 +15511,8 @@ is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001096 ! wall of esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0003833 @@ -15521,7 +15523,7 @@ synonym: "muscle organ of abdominal segment of trunk" EXACT [] is_a: UBERON:0001774 ! skeletal muscle of trunk is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003834 @@ -15532,8 +15534,8 @@ synonym: "thorax blood vessel" EXACT [] synonym: "upper body blood vessel" RELATED [] is_a: UBERON:0003513 ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003835 @@ -15543,8 +15545,8 @@ synonym: "abdominal segment of trunk blood vessel" EXACT [] synonym: "blood vessel of abdominal segment of trunk" EXACT [] is_a: UBERON:0003513 ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003836 @@ -15554,8 +15556,8 @@ synonym: "abdominal segment of trunk skin" EXACT [] synonym: "skin of abdominal segment of trunk" EXACT [] is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003837 @@ -15570,8 +15572,8 @@ synonym: "thorax textus connectivus" EXACT [] synonym: "upper body connective tissue" RELATED [] is_a: UBERON:0003586 ! trunk connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003838 @@ -15585,8 +15587,8 @@ synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [] synonym: "textus connectivus of abdominal segment of trunk" EXACT [] is_a: UBERON:0003586 ! trunk connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003839 @@ -15616,8 +15618,8 @@ synonym: "upper extremity limb joint" EXACT [] synonym: "wing joint" NARROW [] is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003840 @@ -15643,8 +15645,8 @@ synonym: "lower extremity joint of limb" EXACT [] synonym: "lower extremity limb joint" EXACT [] is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003841 @@ -15661,8 +15663,8 @@ synonym: "limb joint of distal free limb segment" EXACT [] synonym: "paw joint" RELATED [] is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0002470 ! autopod region -relationship: BFO:0000050 UBERON:0002470 ! autopod region +intersection_of: BFO:0000050 UBERON:0002470 ! part of autopod region +relationship: BFO:0000050 UBERON:0002470 ! part of autopod region [Term] id: UBERON:0003843 @@ -15676,9 +15678,9 @@ synonym: "tooth epithelium" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0005176 ! tooth enamel organ -relationship: BFO:0000050 UBERON:0005176 ! tooth enamel organ -relationship: RO:0002202 UBERON:0004362 ! pharyngeal arch 1 +intersection_of: BFO:0000050 UBERON:0005176 ! part of tooth enamel organ +relationship: BFO:0000050 UBERON:0005176 ! part of tooth enamel organ +relationship: RO:0002202 UBERON:0004362 ! develops_from pharyngeal arch 1 [Term] id: UBERON:0003846 @@ -15697,8 +15699,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002370 ! thymus -relationship: BFO:0000050 UBERON:0002370 ! thymus +intersection_of: BFO:0000050 UBERON:0002370 ! part of thymus +relationship: BFO:0000050 UBERON:0002370 ! part of thymus [Term] id: UBERON:0003849 @@ -15726,8 +15728,8 @@ def: "A neural plate that develops_from a future spinal cord." [] synonym: "neural plate of spinal cord" EXACT [] is_a: UBERON:0003075 ! neural plate intersection_of: UBERON:0003075 ! neural plate -intersection_of: RO:0002202 UBERON:0006241 ! future spinal cord -relationship: RO:0002202 UBERON:0006241 ! future spinal cord +intersection_of: RO:0002202 UBERON:0006241 ! develops_from future spinal cord +relationship: RO:0002202 UBERON:0006241 ! develops_from future spinal cord [Term] id: UBERON:0003855 @@ -15739,8 +15741,8 @@ synonym: "mesenchyme of gonada" EXACT [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000991 ! gonad -relationship: BFO:0000050 UBERON:0000991 ! gonad +intersection_of: BFO:0000050 UBERON:0000991 ! part of gonad +relationship: BFO:0000050 UBERON:0000991 ! part of gonad [Term] id: UBERON:0003856 @@ -15754,9 +15756,9 @@ synonym: "tooth mesenchyme" EXACT [] is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007529 ! loose mesenchyme tissue intersection_of: UBERON:0007529 ! loose mesenchyme tissue -intersection_of: BFO:0000050 UBERON:0008281 ! tooth bud -relationship: BFO:0000050 UBERON:0008281 ! tooth bud -relationship: RO:0002202 UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: BFO:0000050 UBERON:0008281 ! part of tooth bud +relationship: BFO:0000050 UBERON:0008281 ! part of tooth bud +relationship: RO:0002202 UBERON:0007213 ! develops_from mesenchyme derived from head neural crest [Term] id: UBERON:0003859 @@ -15774,8 +15776,8 @@ synonym: "upper extremity mesenchyme" EXACT [] synonym: "wing mesenchyme" NARROW [] is_a: UBERON:0009749 ! limb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003860 @@ -15790,8 +15792,8 @@ synonym: "mesenchyme of inferior member" EXACT [] synonym: "mesenchyme of lower extremity" EXACT [] is_a: UBERON:0009749 ! limb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003869 @@ -15807,10 +15809,10 @@ synonym: "mesentery of uterus" RELATED [] is_a: UBERON:0001297 ! serosa of uterus is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0000459 ! uterine wall -relationship: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0012332 ! broad ligament of uterus +intersection_of: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0000459 ! part of uterine wall +relationship: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0012332 ! part of broad ligament of uterus [Term] id: UBERON:0003886 @@ -15818,7 +15820,7 @@ name: future coelemic cavity lumen def: "An anatomical cavity that has the potential to develop into a coelemic cavity lumen." [] synonym: "body cavity precursor" RELATED [] is_a: UBERON:0000464 ! anatomical space -relationship: BFO:0000050 UBERON:0000926 ! mesoderm +relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm [Term] id: UBERON:0003887 @@ -15826,8 +15828,8 @@ name: intraembryonic coelom def: "The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom" [] synonym: "somatic coelom" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0011997 ! coelom -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0011997 ! part of coelom +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm [Term] id: UBERON:0003889 @@ -15845,11 +15847,11 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013515 ! subdivision of oviduct is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0013515 ! subdivision of oviduct -intersection_of: BFO:0000050 UBERON:0000993 ! oviduct -intersection_of: RO:0002202 UBERON:0003890 ! Mullerian duct -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0003975 ! internal female genitalia -relationship: RO:0002202 UBERON:0003890 ! Mullerian duct +intersection_of: BFO:0000050 UBERON:0000993 ! part of oviduct +intersection_of: RO:0002202 UBERON:0003890 ! develops_from Mullerian duct +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0003975 ! part of internal female genitalia +relationship: RO:0002202 UBERON:0003890 ! develops_from Mullerian duct [Term] id: UBERON:0003890 @@ -15863,8 +15865,8 @@ synonym: "paramesonephric duct" EXACT [] is_a: UBERON:0000025 ! tube is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm [Term] id: UBERON:0003891 @@ -15872,7 +15874,7 @@ name: stroma def: "Connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [] synonym: "stromal connective tissue" RELATED [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0003893 @@ -15894,15 +15896,15 @@ is_a: UBERON:0001048 ! primordium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0009497 ! epithelium of foregut-midgut junction -relationship: BFO:0000050 UBERON:0009550 ! endoderm of foregut-midgut junction -relationship: RO:0002202 UBERON:0001041 ! foregut +relationship: BFO:0000050 UBERON:0009550 ! part of endoderm of foregut-midgut junction +relationship: RO:0002202 UBERON:0001041 ! develops_from foregut [Term] id: UBERON:0003897 name: axial muscle def: "One of the skeletal muscles of the head and neck, spine, and ribs." [] is_a: UBERON:0014892 ! skeletal muscle organ -relationship: BFO:0000050 UBERON:0013700 ! axial musculature +relationship: BFO:0000050 UBERON:0013700 ! part of axial musculature [Term] id: UBERON:0003898 @@ -15917,9 +15919,9 @@ synonym: "trunk skeletal muscle" EXACT [] synonym: "trunk skeletal muscle tissue" EXACT [] is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0004479 ! musculature of trunk -relationship: BFO:0000050 UBERON:0013700 ! axial musculature +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0004479 ! part of musculature of trunk +relationship: BFO:0000050 UBERON:0013700 ! part of axial musculature [Term] id: UBERON:0003902 @@ -15932,7 +15934,9 @@ synonym: "neuroretina" EXACT [] synonym: "stratum nervosum (retina)" EXACT [] synonym: "stratum nervosum retinae" EXACT [] is_a: UBERON:0001781 ! layer of retina -relationship: RO:0002202 UBERON:0005425 ! presumptive neural retina +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: RO:0002495 UBERON:0005425 ! immediate transformation of presumptive neural retina +relationship: RO:0002495 UBERON:0005425 ! immediate transformation of presumptive neural retina [Term] id: UBERON:0003909 @@ -15955,8 +15959,8 @@ synonym: "sinusoidal blood vessel of spleen" EXACT [] is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0003909 ! sinusoid intersection_of: UBERON:0003909 ! sinusoid -intersection_of: BFO:0000050 UBERON:0001250 ! red pulp of spleen -relationship: BFO:0000050 UBERON:0001250 ! red pulp of spleen +intersection_of: BFO:0000050 UBERON:0001250 ! part of red pulp of spleen +relationship: BFO:0000050 UBERON:0001250 ! part of red pulp of spleen [Term] id: UBERON:0003911 @@ -15968,8 +15972,8 @@ synonym: "epithelial tissue of choroid plexus" EXACT [] synonym: "epithelium of choroid plexus" EXACT [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001886 ! choroid plexus -relationship: BFO:0000050 UBERON:0001886 ! choroid plexus +intersection_of: BFO:0000050 UBERON:0001886 ! part of choroid plexus +relationship: BFO:0000050 UBERON:0001886 ! part of choroid plexus [Term] id: UBERON:0003913 @@ -16008,8 +16012,8 @@ synonym: "segment of venous tree organ" EXACT [] synonym: "venous tree organ segment" EXACT [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0004582 ! venous system -relationship: BFO:0000050 UBERON:0004582 ! venous system +intersection_of: BFO:0000050 UBERON:0004582 ! part of venous system +relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0003921 @@ -16021,8 +16025,8 @@ synonym: "pancreatic primordium" EXACT [] synonym: "primordial pancreas" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0007026 ! presumptive gut -relationship: RO:0002202 UBERON:0000925 ! endoderm +relationship: BFO:0000050 UBERON:0007026 ! part of presumptive gut +relationship: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0003922 @@ -16035,10 +16039,10 @@ synonym: "pancreatic buds" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac -relationship: BFO:0000050 UBERON:0003921 ! pancreas primordium -relationship: RO:0002202 UBERON:0001041 ! foregut -relationship: RO:0002202 UBERON:0002114 ! duodenum -relationship: RO:0002202 UBERON:0009497 ! epithelium of foregut-midgut junction +relationship: BFO:0000050 UBERON:0003921 ! part of pancreas primordium +relationship: RO:0002202 UBERON:0001041 ! develops_from foregut +relationship: RO:0002202 UBERON:0002114 ! develops_from duodenum +relationship: RO:0002202 UBERON:0009497 ! develops_from epithelium of foregut-midgut junction [Term] id: UBERON:0003923 @@ -16052,8 +16056,8 @@ synonym: "posterior pancreatic anlage" RELATED [] synonym: "posterior pancreatic bud" RELATED [] synonym: "primary pancreatic bud" EXACT [] is_a: UBERON:0003922 ! pancreatic epithelial bud -relationship: BFO:0000050 UBERON:0010375 ! pancreas dorsal primordium -relationship: RO:0002202 UBERON:0001045 ! midgut +relationship: BFO:0000050 UBERON:0010375 ! part of pancreas dorsal primordium +relationship: RO:0002202 UBERON:0001045 ! develops_from midgut [Term] id: UBERON:0003924 @@ -16066,8 +16070,8 @@ synonym: "pancreas ventral primordium duct bud" EXACT [] synonym: "ventral pancreas anlage" RELATED [] synonym: "ventral pancreatic anlage" RELATED [] is_a: UBERON:0003922 ! pancreatic epithelial bud -relationship: BFO:0000050 UBERON:0010376 ! pancreas ventral primordium -relationship: RO:0002202 UBERON:0008835 ! hepatic diverticulum +relationship: BFO:0000050 UBERON:0010376 ! part of pancreas ventral primordium +relationship: RO:0002202 UBERON:0008835 ! develops_from hepatic diverticulum [Term] id: UBERON:0003928 @@ -16078,8 +16082,8 @@ synonym: "duct of gastrointestinal system" EXACT [] synonym: "gastrointestinal system duct" EXACT [] is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0001007 ! digestive system -relationship: BFO:0000050 UBERON:0001007 ! digestive system +intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system +relationship: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0003929 @@ -16096,8 +16100,8 @@ synonym: "gut epithelial tissue" EXACT [] synonym: "gut epithelium" EXACT [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0003931 @@ -16109,8 +16113,8 @@ synonym: "predominantly white regional part of diencephalon" EXACT [] synonym: "white matter of diencephalon" EXACT [] is_a: UBERON:0019261 ! white matter of forebrain intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0003932 @@ -16122,8 +16126,8 @@ synonym: "chondrocranium cartilage" EXACT [] synonym: "neurocranium cartilage" EXACT [] is_a: UBERON:0003933 ! cranial cartilage intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0002241 ! chondrocranium -relationship: BFO:0000050 UBERON:0002241 ! chondrocranium +intersection_of: BFO:0000050 UBERON:0002241 ! part of chondrocranium +relationship: BFO:0000050 UBERON:0002241 ! part of chondrocranium [Term] id: UBERON:0003933 @@ -16134,8 +16138,8 @@ synonym: "cranial cartilages" RELATED [] synonym: "cranium cartilage" EXACT [] is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0010323 ! cranial skeletal system -relationship: BFO:0000050 UBERON:0010323 ! cranial skeletal system +intersection_of: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system +relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system [Term] id: UBERON:0003937 @@ -16150,7 +16154,7 @@ synonym: "sex gland" EXACT [] is_a: UBERON:0002530 ! gland is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000990 ! reproductive system +intersection_of: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0003942 @@ -16161,8 +16165,8 @@ synonym: "somatosensory system" EXACT [] synonym: "system for detection of somatic senses" EXACT [] is_a: UBERON:0001032 ! sensory system intersection_of: UBERON:0001032 ! sensory system -intersection_of: BFO:0000050 UBERON:0000012 ! somatic nervous system -relationship: BFO:0000050 UBERON:0000012 ! somatic nervous system +intersection_of: BFO:0000050 UBERON:0000012 ! part of somatic nervous system +relationship: BFO:0000050 UBERON:0000012 ! part of somatic nervous system [Term] id: UBERON:0003947 @@ -16172,7 +16176,7 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure union_of: UBERON:0001886 ! choroid plexus union_of: UBERON:0004086 ! brain ventricle -relationship: BFO:0000050 UBERON:0000955 ! brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0003956 @@ -16180,7 +16184,7 @@ name: aqueous drainage system def: "The structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [] is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001768 ! uvea +relationship: BFO:0000050 UBERON:0001768 ! part of uvea [Term] id: UBERON:0003967 @@ -16191,8 +16195,8 @@ synonym: "dermal elastic fiber" NARROW [] is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue -intersection_of: BFO:0000050 UBERON:0000014 ! zone of skin -relationship: BFO:0000050 UBERON:0000014 ! zone of skin +intersection_of: BFO:0000050 UBERON:0000014 ! part of zone of skin +relationship: BFO:0000050 UBERON:0000014 ! part of zone of skin [Term] id: UBERON:0003975 @@ -16205,7 +16209,7 @@ synonym: "organa genitalia feminina interna" RELATED [] is_a: UBERON:0003134 ! female reproductive organ is_a: UBERON:0004175 ! internal genitalia intersection_of: UBERON:0004175 ! internal genitalia -intersection_of: BFO:0000050 UBERON:0000474 ! female reproductive system +intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system [Term] id: UBERON:0003988 @@ -16221,8 +16225,8 @@ synonym: "thymus corticomedullary junction" EXACT [] synonym: "thymus corticomedullary zone" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction -relationship: BFO:0000050 UBERON:0002125 ! thymus lobule -relationship: BFO:0000051 UBERON:0001980 ! arteriole +relationship: BFO:0000050 UBERON:0002125 ! part of thymus lobule +relationship: BFO:0000051 UBERON:0001980 ! has part arteriole [Term] id: UBERON:0003990 @@ -16238,8 +16242,8 @@ synonym: "cytoarchitectural part of olfactory bulb" EXACT [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer -intersection_of: BFO:0000050 UBERON:0002264 ! olfactory bulb -relationship: BFO:0000050 UBERON:0002264 ! olfactory bulb +intersection_of: BFO:0000050 UBERON:0002264 ! part of olfactory bulb +relationship: BFO:0000050 UBERON:0002264 ! part of olfactory bulb [Term] id: UBERON:0004016 @@ -16250,8 +16254,8 @@ synonym: "dermatomal mesenchyme" EXACT [] synonym: "epimere mesoderm" RELATED [] synonym: "mesenchyma dermatomiale" RELATED [] is_a: UBERON:0017650 ! developing mesenchymal structure -relationship: RO:0002202 UBERON:0002329 ! somite -relationship: RO:0002202 UBERON:0004290 ! dermomyotome +relationship: RO:0002202 UBERON:0002329 ! develops_from somite +relationship: RO:0002202 UBERON:0004290 ! develops_from dermomyotome [Term] id: UBERON:0004022 @@ -16264,7 +16268,7 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034706 ! proliferating neuroepithelium disjoint_from: UBERON:0006934 ! sensory epithelium -relationship: BFO:0000050 UBERON:0001049 ! neural tube +relationship: BFO:0000050 UBERON:0001049 ! part of neural tube [Term] id: UBERON:0004041 @@ -16274,7 +16278,7 @@ synonym: "primary spleen B cell follicle" EXACT [] is_a: UBERON:0001249 ! spleen lymphoid follicle is_a: UBERON:0010422 ! primary nodular lymphoid tissue intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue -intersection_of: BFO:0000050 UBERON:0002106 ! spleen +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0004042 @@ -16285,8 +16289,8 @@ synonym: "splenic secondary B cell follicle" EXACT [] is_a: UBERON:0001249 ! spleen lymphoid follicle is_a: UBERON:0001745 ! secondary nodular lymphoid tissue intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: RO:0002202 UBERON:0004041 ! spleen primary B follicle +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: RO:0002202 UBERON:0004041 ! develops_from spleen primary B follicle [Term] id: UBERON:0004043 @@ -16298,7 +16302,7 @@ synonym: "semicircular duct ampulla" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001856 ! semicircular duct +relationship: BFO:0000050 UBERON:0001856 ! part of semicircular duct [Term] id: UBERON:0004044 @@ -16317,7 +16321,7 @@ synonym: "organa genitalia masculina externa" RELATED [] is_a: UBERON:0003135 ! male reproductive organ is_a: UBERON:0004176 ! external genitalia intersection_of: UBERON:0004176 ! external genitalia -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system disjoint_from: UBERON:0005056 ! external female genitalia disjoint_from: UBERON:0009196 ! indifferent external genitalia @@ -16331,7 +16335,7 @@ synonym: "organa genitalia masculina interna" RELATED [] is_a: UBERON:0003135 ! male reproductive organ is_a: UBERON:0004175 ! internal genitalia intersection_of: UBERON:0004175 ! internal genitalia -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system [Term] id: UBERON:0004059 @@ -16348,8 +16352,8 @@ synonym: "neural tube intermediate zone" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034707 ! differentiating neuroepithelium -relationship: BFO:0000050 UBERON:0001049 ! neural tube -relationship: RO:0002202 UBERON:0004022 ! germinal neuroepithelium +relationship: BFO:0000050 UBERON:0001049 ! part of neural tube +relationship: RO:0002202 UBERON:0004022 ! develops_from germinal neuroepithelium [Term] id: UBERON:0004066 @@ -16361,7 +16365,7 @@ synonym: "frontonasal mass" RELATED [] synonym: "frontonasal process" RELATED [] synonym: "prominentia frontonasalis" RELATED [] is_a: UBERON:0009292 ! embryonic nasal process -relationship: BFO:0000050 UBERON:0000033 ! head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0004068 @@ -16373,9 +16377,9 @@ synonym: "medial-nasal process" EXACT [] synonym: "nasomedial prominence" RELATED [] synonym: "prominentia nasalis medialis" EXACT [] is_a: UBERON:0009292 ! embryonic nasal process -relationship: BFO:0000050 UBERON:0004066 ! frontonasal prominence -relationship: BFO:0000050 UBERON:0008816 ! embryonic head -relationship: RO:0002202 UBERON:0004066 ! frontonasal prominence +relationship: BFO:0000050 UBERON:0004066 ! part of frontonasal prominence +relationship: BFO:0000050 UBERON:0008816 ! part of embryonic head +relationship: RO:0002202 UBERON:0004066 ! develops_from frontonasal prominence [Term] id: UBERON:0004086 @@ -16386,7 +16390,7 @@ synonym: "cerebral ventricle" EXACT [] synonym: "region of ventricular system of brain" EXACT [] is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005358 ! ventricle of nervous system -relationship: BFO:0000050 UBERON:0005282 ! ventricular system of brain +relationship: BFO:0000050 UBERON:0005282 ! part of ventricular system of brain [Term] id: UBERON:0004088 @@ -16400,7 +16404,7 @@ synonym: "orbital content" RELATED [] synonym: "orbital part of eye" RELATED [] synonym: "orbital part of face" EXACT [] is_a: UBERON:0001444 ! subdivision of head -relationship: BFO:0000050 UBERON:0001456 ! face +relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:0004111 @@ -16412,7 +16416,7 @@ synonym: "opening" RELATED [] synonym: "ostia" RELATED [] synonym: "ostium" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000051 UBERON:0013686 ! anatomical conduit space +relationship: BFO:0000051 UBERON:0013686 ! has part anatomical conduit space [Term] id: UBERON:0004117 @@ -16426,8 +16430,8 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0008814 ! pharyngeal arch system -relationship: RO:0002202 UBERON:0007690 ! early pharyngeal endoderm +relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system +relationship: RO:0002202 UBERON:0007690 ! develops_from early pharyngeal endoderm [Term] id: UBERON:0004118 @@ -16439,8 +16443,8 @@ synonym: "iris vasculature" EXACT [] synonym: "vascular network of iris" EXACT [] is_a: UBERON:0002203 ! vasculature of eye intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: BFO:0000050 UBERON:0001769 ! iris +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: BFO:0000050 UBERON:0001769 ! part of iris [Term] id: UBERON:0004119 @@ -16448,8 +16452,8 @@ name: endoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the endoderm." [] is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure -intersection_of: RO:0002202 UBERON:0000925 ! endoderm -relationship: RO:0002202 UBERON:0000925 ! endoderm +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm +relationship: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0004120 @@ -16458,8 +16462,8 @@ def: "An anatomical structure that develops (entirely or partially) from the mes synonym: "mesodermal derivative" EXACT [] is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure -intersection_of: RO:0002202 UBERON:0000926 ! mesoderm -relationship: RO:0002202 UBERON:0000926 ! mesoderm +intersection_of: RO:0002202 UBERON:0000926 ! develops_from mesoderm +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0004121 @@ -16468,8 +16472,8 @@ def: "An anatomical structure that develops (entirely or partially) from the ect synonym: "ectodermal deriviative" EXACT [] is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm -relationship: RO:0002202 UBERON:0000924 ! ectoderm +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0004122 @@ -16485,11 +16489,11 @@ synonym: "Urogenitalsystem" RELATED [] is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000467 ! anatomical system -intersection_of: BFO:0000051 UBERON:0000990 ! reproductive system -intersection_of: BFO:0000051 UBERON:0001008 ! renal system -relationship: BFO:0000051 UBERON:0000990 ! reproductive system -relationship: BFO:0000051 UBERON:0001008 ! renal system -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm +intersection_of: BFO:0000051 UBERON:0000990 ! has part reproductive system +intersection_of: BFO:0000051 UBERON:0001008 ! has part renal system +relationship: BFO:0000051 UBERON:0000990 ! has part reproductive system +relationship: BFO:0000051 UBERON:0001008 ! has part renal system +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm [Term] id: UBERON:0004128 @@ -16501,9 +16505,9 @@ synonym: "ocular vesicle" RELATED [] synonym: "optic vesicles" RELATED [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0010312 ! immature eye -relationship: RO:0002202 UBERON:0002346 ! neurectoderm -relationship: RO:0002202 UBERON:0003071 ! eye primordium +relationship: BFO:0000050 UBERON:0010312 ! part of immature eye +relationship: RO:0002202 UBERON:0002346 ! develops_from neurectoderm +relationship: RO:0002202 UBERON:0003071 ! develops_from eye primordium [Term] id: UBERON:0004129 @@ -16511,7 +16515,7 @@ name: growth plate cartilage def: "cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [] synonym: "growth plate" RELATED [] is_a: UBERON:0002418 ! cartilage tissue -relationship: BFO:0000050 UBERON:0010363 ! endochondral element +relationship: BFO:0000050 UBERON:0010363 ! part of endochondral element [Term] id: UBERON:0004130 @@ -16524,8 +16528,8 @@ synonym: "layer of cerebellum" EXACT [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 ! central nervous system gray matter layer intersection_of: UBERON:0016548 ! central nervous system gray matter layer -intersection_of: BFO:0000050 UBERON:0002037 ! cerebellum -relationship: BFO:0000050 UBERON:0002129 ! cerebellar cortex +intersection_of: BFO:0000050 UBERON:0002037 ! part of cerebellum +relationship: BFO:0000050 UBERON:0002129 ! part of cerebellar cortex [Term] id: UBERON:0004134 @@ -16535,8 +16539,8 @@ synonym: "kidney proximal tubule" EXACT [] synonym: "proximal kidney tubule" EXACT [] synonym: "renal proximal tubule" EXACT [] is_a: UBERON:0006853 ! renal cortex tubule -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0001231 ! nephron tubule +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0001231 ! part of nephron tubule [Term] id: UBERON:0004135 @@ -16553,7 +16557,7 @@ def: "The intermediate tubule is a nephron tubule that lies between the proximal synonym: "renal intermediate tubule" EXACT [] synonym: "tubulus attenuatus" EXACT [] is_a: UBERON:0007685 ! region of nephron tubule -relationship: BFO:0000050 UBERON:0001288 ! loop of Henle +relationship: BFO:0000050 UBERON:0001288 ! part of loop of Henle [Term] id: UBERON:0004139 @@ -16564,7 +16568,7 @@ synonym: "cardiogenic crescent" RELATED [] synonym: "heart rudiment" RELATED [] synonym: "myocardial plate" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: RO:0002202 UBERON:0003084 ! heart primordium +relationship: RO:0002202 UBERON:0003084 ! develops_from heart primordium [Term] id: UBERON:0004140 @@ -16579,8 +16583,8 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm -relationship: BFO:0000050 UBERON:0036146 ! cardiopharyngeal field +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm +relationship: BFO:0000050 UBERON:0036146 ! part of cardiopharyngeal field [Term] id: UBERON:0004141 @@ -16592,7 +16596,7 @@ synonym: "endocardial tube" EXACT [] is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0012275 ! meso-epithelium -relationship: RO:0002202 UBERON:0005498 ! primitive heart tube +relationship: RO:0002495 UBERON:0005498 ! immediate transformation of primitive heart tube [Term] id: UBERON:0004142 @@ -16600,8 +16604,8 @@ name: outflow tract septum def: "The outflow tract septum is a partition in the outflow tract" [] is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum -intersection_of: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: BFO:0000050 UBERON:0004145 ! outflow tract +intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004145 @@ -16612,7 +16616,7 @@ synonym: "cardiac outflow tract" EXACT [] synonym: "heart outflow tract" EXACT [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0000948 ! heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0004146 @@ -16622,8 +16626,8 @@ synonym: "His-Purkinji network" EXACT [] synonym: "HPS" EXACT [] is_a: UBERON:0010131 ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle -relationship: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0002350 ! conducting system of heart +relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart [Term] id: UBERON:0004151 @@ -16633,7 +16637,7 @@ synonym: "chamber of heart" EXACT [] synonym: "heart chamber" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0000948 ! heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0004160 @@ -16642,8 +16646,8 @@ def: "An embryonic group of progenitor cells that forms from an outpouching of t synonym: "proepicardial cluster" EXACT [] synonym: "proepicardial organ" EXACT [] is_a: UBERON:0003104 ! mesenchyme -relationship: BFO:0000050 UBERON:0004161 ! septum transversum -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system +relationship: BFO:0000050 UBERON:0004161 ! part of septum transversum +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0004161 @@ -16651,7 +16655,7 @@ name: septum transversum def: "A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[VHOG]." [] synonym: "transverse septum" EXACT [] is_a: UBERON:0003104 ! mesenchyme -relationship: BFO:0000050 UBERON:0002100 ! trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0004164 @@ -16662,8 +16666,8 @@ synonym: "branchiomeric skeletal muscle" EXACT [] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000051 UBERON:0001134 ! skeletal muscle tissue -relationship: RO:0002202 UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme +relationship: BFO:0000051 UBERON:0001134 ! has part skeletal muscle tissue +relationship: RO:0002202 UBERON:0010360 ! develops_from pharyngeal arch mesenchyme from head mesenchyme [Term] id: UBERON:0004175 @@ -16703,8 +16707,8 @@ synonym: "organa haemopoietica organ" EXACT [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0002390 ! hematopoietic system -relationship: BFO:0000050 UBERON:0002390 ! hematopoietic system +intersection_of: BFO:0000050 UBERON:0002390 ! part of hematopoietic system +relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system [Term] id: UBERON:0004178 @@ -16716,8 +16720,8 @@ synonym: "aortic smooth muscle" EXACT [] is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0000947 ! aorta +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0004179 @@ -16728,8 +16732,8 @@ synonym: "prostatic follicle" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009842 ! glandular acinus -relationship: BFO:0000050 UBERON:0000428 ! prostate epithelium -relationship: RO:0002202 UBERON:0009843 ! prostate epithelial cord +relationship: BFO:0000050 UBERON:0000428 ! part of prostate epithelium +relationship: RO:0002202 UBERON:0009843 ! develops_from prostate epithelial cord [Term] id: UBERON:0004180 @@ -16760,7 +16764,7 @@ synonym: "mammary gland fatty tissue" EXACT [] is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003584 ! mammary gland connective tissue intersection_of: UBERON:0001013 ! adipose tissue -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland [Term] id: UBERON:0004182 @@ -16773,8 +16777,8 @@ is_a: UBERON:0003244 ! epithelium of mammary gland is_a: UBERON:0005154 ! epithelial cord is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0005154 ! epithelial cord -intersection_of: BFO:0000050 UBERON:0001765 ! mammary duct -relationship: BFO:0000050 UBERON:0001765 ! mammary duct +intersection_of: BFO:0000050 UBERON:0001765 ! part of mammary duct +relationship: BFO:0000050 UBERON:0001765 ! part of mammary duct [Term] id: UBERON:0004184 @@ -16789,8 +16793,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0004185 @@ -16801,8 +16805,8 @@ synonym: "gut endoderm" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -intersection_of: RO:0002202 UBERON:0000925 ! endoderm +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0004186 @@ -16827,8 +16831,8 @@ synonym: "kidney glomerular epithelium" EXACT [] is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000074 ! renal glomerulus -relationship: BFO:0000050 UBERON:0000074 ! renal glomerulus +intersection_of: BFO:0000050 UBERON:0000074 ! part of renal glomerulus +relationship: BFO:0000050 UBERON:0000074 ! part of renal glomerulus [Term] id: UBERON:0004189 @@ -16839,8 +16843,8 @@ synonym: "renal glomerulus endothelium" EXACT [] is_a: UBERON:0004188 ! glomerular epithelium is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0000074 ! renal glomerulus -relationship: BFO:0000050 UBERON:0004190 ! renal glomerulus vasculature +intersection_of: BFO:0000050 UBERON:0000074 ! part of renal glomerulus +relationship: BFO:0000050 UBERON:0004190 ! part of renal glomerulus vasculature [Term] id: UBERON:0004190 @@ -16853,8 +16857,8 @@ synonym: "vascular network of renal glomerulus" EXACT [] synonym: "vasculature of renal glomerulus" EXACT [] is_a: UBERON:0006544 ! kidney vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000074 ! renal glomerulus -relationship: BFO:0000050 UBERON:0000074 ! renal glomerulus +intersection_of: BFO:0000050 UBERON:0000074 ! part of renal glomerulus +relationship: BFO:0000050 UBERON:0000074 ! part of renal glomerulus [Term] id: UBERON:0004193 @@ -16866,8 +16870,8 @@ synonym: "pars ascendens (tubulus attenuatus)" EXACT [] synonym: "thin ascending limb" EXACT [] synonym: "thin ascending limb of loop of Henle" EXACT [] is_a: UBERON:0007685 ! region of nephron tubule -relationship: BFO:0000050 UBERON:0003455 ! inner renal medulla loop of Henle -relationship: BFO:0000050 UBERON:0005164 ! ascending limb of loop of Henle +relationship: BFO:0000050 UBERON:0003455 ! part of inner renal medulla loop of Henle +relationship: BFO:0000050 UBERON:0005164 ! part of ascending limb of loop of Henle [Term] id: UBERON:0004198 @@ -16875,8 +16879,8 @@ name: comma-shaped body def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [] synonym: "CSB" EXACT [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0010532 ! primitive nephron -relationship: RO:0002202 UBERON:0004209 ! renal vesicle +relationship: BFO:0000050 UBERON:0010532 ! part of primitive nephron +relationship: RO:0002202 UBERON:0004209 ! develops_from renal vesicle [Term] id: UBERON:0004199 @@ -16885,8 +16889,8 @@ def: "The S-shaped body is the successor of the comma-shaped body that contribut synonym: "SSB" EXACT [] synonym: "stage II nephron" EXACT [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0010532 ! primitive nephron -relationship: RO:0002202 UBERON:0004198 ! comma-shaped body +relationship: BFO:0000050 UBERON:0010532 ! part of primitive nephron +relationship: RO:0002202 UBERON:0004198 ! develops_from comma-shaped body [Term] id: UBERON:0004200 @@ -16904,7 +16908,7 @@ synonym: "pyramis renalis" RELATED [] synonym: "renal medullary region" RELATED [] synonym: "renal pyramid" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0000362 ! renal medulla +relationship: BFO:0000050 UBERON:0000362 ! part of renal medulla [Term] id: UBERON:0004201 @@ -16917,7 +16921,7 @@ synonym: "inner stripe of renal medulla" EXACT [] synonym: "outer medulla inner stripe" EXACT [] synonym: "stria interna medullae renalis" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney [Term] id: UBERON:0004202 @@ -16930,7 +16934,7 @@ synonym: "outer stripe of outer medulla" EXACT [] synonym: "outer stripe of renal medulla" EXACT [] synonym: "stria externa medullae renalis" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney [Term] id: UBERON:0004203 @@ -16940,10 +16944,10 @@ synonym: "kidney cortex collecting duct" EXACT [] synonym: "renal cortex collecting duct" RELATED [] is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube -intersection_of: BFO:0000050 UBERON:0001225 ! cortex of kidney -intersection_of: BFO:0000050 UBERON:0001232 ! collecting duct of renal tubule -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0001232 ! collecting duct of renal tubule +intersection_of: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +intersection_of: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule [Term] id: UBERON:0004204 @@ -16953,8 +16957,8 @@ synonym: "kidney outer medulla collecting duct" EXACT [] synonym: "outer renal medulla collecting duct" EXACT [] is_a: UBERON:0001232 ! collecting duct of renal tubule intersection_of: UBERON:0001232 ! collecting duct of renal tubule -intersection_of: BFO:0000050 UBERON:0001293 ! outer medulla of kidney -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney +intersection_of: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney [Term] id: UBERON:0004205 @@ -16965,8 +16969,8 @@ synonym: "kidney inner medulla collecting duct" EXACT [] synonym: "papillary collecting duct" RELATED [] is_a: UBERON:0001232 ! collecting duct of renal tubule intersection_of: UBERON:0001232 ! collecting duct of renal tubule -intersection_of: BFO:0000050 UBERON:0001294 ! inner medulla of kidney -relationship: BFO:0000050 UBERON:0001294 ! inner medulla of kidney +intersection_of: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney +relationship: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney [Term] id: UBERON:0004208 @@ -16982,8 +16986,8 @@ name: renal vesicle def: "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells." [] synonym: "stage I nephron" EXACT [] is_a: UBERON:0007503 ! epithelial vesicle -relationship: BFO:0000050 UBERON:0010536 ! nephron progenitor -relationship: RO:0002202 UBERON:0004208 ! nephrogenic mesenchyme +relationship: BFO:0000050 UBERON:0010536 ! part of nephron progenitor +relationship: RO:0002202 UBERON:0004208 ! develops_from nephrogenic mesenchyme [Term] id: UBERON:0004211 @@ -16994,8 +16998,8 @@ synonym: "epithelium of nephron" EXACT [] synonym: "nephron epithelial tissue" EXACT [] is_a: UBERON:0004819 ! kidney epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001285 ! nephron -relationship: BFO:0000050 UBERON:0001285 ! nephron +intersection_of: BFO:0000050 UBERON:0001285 ! part of nephron +relationship: BFO:0000050 UBERON:0001285 ! part of nephron [Term] id: UBERON:0004212 @@ -17011,8 +17015,8 @@ synonym: "renal glomerulus capillary" EXACT [] synonym: "renal glomerulus capillary vessel" EXACT [] is_a: UBERON:0003527 ! kidney capillary intersection_of: UBERON:0001982 ! capillary -intersection_of: BFO:0000050 UBERON:0000074 ! renal glomerulus -relationship: BFO:0000050 UBERON:0004190 ! renal glomerulus vasculature +intersection_of: BFO:0000050 UBERON:0000074 ! part of renal glomerulus +relationship: BFO:0000050 UBERON:0004190 ! part of renal glomerulus vasculature [Term] id: UBERON:0004214 @@ -17024,8 +17028,8 @@ synonym: "lower extremity stylopod nerve" EXACT [] synonym: "thigh RELATED" EXACT [] is_a: UBERON:0003431 ! leg nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0004215 @@ -17034,8 +17038,8 @@ def: "A nerve that is part of a back [Automatically generated definition]." [] synonym: "nerve of back" EXACT [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004217 @@ -17043,8 +17047,8 @@ name: upper arm nerve def: "A nerve that is part of a forelimb stylopod [Automatically generated definition]." [] is_a: UBERON:0003433 ! arm nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0004219 @@ -17060,8 +17064,8 @@ synonym: "urethra smooth muscle tissue" EXACT [] synonym: "urethral smooth muscle" RELATED [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0004220 @@ -17076,8 +17080,8 @@ synonym: "smooth muscle of large intestine" EXACT [] synonym: "smooth muscle tissue of large intestine" EXACT [] is_a: UBERON:0004221 ! intestine smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001169 ! wall of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0004221 @@ -17102,8 +17106,8 @@ synonym: "smooth muscle tissue of bowel" EXACT [] synonym: "smooth muscle tissue of intestine" EXACT [] is_a: UBERON:0004226 ! gastrointestinal system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0001262 ! wall of intestine +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0004222 @@ -17129,8 +17133,8 @@ synonym: "ventriculus smooth muscle" EXACT [] synonym: "ventriculus smooth muscle tissue" EXACT [] is_a: UBERON:0004226 ! gastrointestinal system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0001167 ! wall of stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach [Term] id: UBERON:0004223 @@ -17148,8 +17152,8 @@ synonym: "vaginal smooth muscle" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0004225 @@ -17161,8 +17165,8 @@ synonym: "respiratory smooth muscle" EXACT [] synonym: "smooth muscle of respiratory system" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004226 @@ -17171,8 +17175,8 @@ def: "A portion of smooth muscle tissue that is part of a digestive system [Auto synonym: "smooth muscle tissue of gastrointestinal system" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004227 @@ -17184,8 +17188,8 @@ synonym: "renal pelvis smooth muscle" EXACT [] synonym: "smooth muscle tissue of renal pelvis" EXACT [] is_a: UBERON:0009919 ! ureter smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001224 ! renal pelvis -relationship: BFO:0000050 UBERON:0001224 ! renal pelvis +intersection_of: BFO:0000050 UBERON:0001224 ! part of renal pelvis +relationship: BFO:0000050 UBERON:0001224 ! part of renal pelvis [Term] id: UBERON:0004228 @@ -17210,8 +17214,8 @@ synonym: "urinary bladder non-striated muscle" EXACT [] synonym: "urinary bladder smooth muscle tissue" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001255 ! urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder [Term] id: UBERON:0004229 @@ -17267,8 +17271,8 @@ synonym: "vesical trigone smooth muscle" EXACT [] synonym: "vesical trigone smooth muscle tissue" EXACT [] is_a: UBERON:0004228 ! urinary bladder smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001257 ! trigone of urinary bladder -relationship: BFO:0000050 UBERON:0001257 ! trigone of urinary bladder +intersection_of: BFO:0000050 UBERON:0001257 ! part of trigone of urinary bladder +relationship: BFO:0000050 UBERON:0001257 ! part of trigone of urinary bladder [Term] id: UBERON:0004230 @@ -17318,8 +17322,8 @@ synonym: "vesical neck smooth muscle" EXACT [] synonym: "vesical neck smooth muscle tissue" EXACT [] is_a: UBERON:0004228 ! urinary bladder smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001258 ! neck of urinary bladder -relationship: BFO:0000050 UBERON:0001258 ! neck of urinary bladder +intersection_of: BFO:0000050 UBERON:0001258 ! part of neck of urinary bladder +relationship: BFO:0000050 UBERON:0001258 ! part of neck of urinary bladder [Term] id: UBERON:0004231 @@ -17350,8 +17354,8 @@ synonym: "smooth muscle tissue of anal region" EXACT [] synonym: "smooth muscle tissue of anal triangle" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001353 ! anal region -relationship: BFO:0000050 UBERON:0001353 ! anal region +intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0004232 @@ -17374,8 +17378,8 @@ synonym: "smooth muscle tissue of lymph vessel" EXACT [] synonym: "smooth muscle tissue of lymphatic vessel" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001473 ! lymphatic vessel -relationship: BFO:0000050 UBERON:0001473 ! lymphatic vessel +intersection_of: BFO:0000050 UBERON:0001473 ! part of lymphatic vessel +relationship: BFO:0000050 UBERON:0001473 ! part of lymphatic vessel [Term] id: UBERON:0004233 @@ -17391,8 +17395,8 @@ synonym: "smooth muscle tissue of lower respiratory tract" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004225 ! respiratory system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract +intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0004234 @@ -17408,8 +17412,8 @@ synonym: "smooth muscle of iris" EXACT [] synonym: "smooth muscle tissue of iris" EXACT [] is_a: UBERON:0003386 ! smooth muscle of eye intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001769 ! iris -relationship: BFO:0000050 UBERON:0001606 ! muscle of iris +intersection_of: BFO:0000050 UBERON:0001769 ! part of iris +relationship: BFO:0000050 UBERON:0001606 ! part of muscle of iris [Term] id: UBERON:0004235 @@ -17419,8 +17423,8 @@ synonym: "smooth muscle tissue of mammary gland" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001911 ! mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001911 ! part of mammary gland [Term] id: UBERON:0004236 @@ -17429,8 +17433,8 @@ def: "A portion of smooth muscle tissue that is part of an arteriole [Automatica is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001980 ! arteriole -relationship: BFO:0000050 UBERON:0001980 ! arteriole +intersection_of: BFO:0000050 UBERON:0001980 ! part of arteriole +relationship: BFO:0000050 UBERON:0001980 ! part of arteriole [Term] id: UBERON:0004237 @@ -17447,8 +17451,8 @@ synonym: "vascular smooth muscle" EXACT [] synonym: "vascular smooth muscle tissue" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0001981 ! blood vessel +intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel +relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel [Term] id: UBERON:0004238 @@ -17463,8 +17467,8 @@ synonym: "spleen non-striated muscle" EXACT [] synonym: "spleen smooth muscle tissue" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: BFO:0000050 UBERON:0002106 ! spleen +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0004239 @@ -17487,8 +17491,8 @@ synonym: "smooth muscle tissue of small bowel" EXACT [] synonym: "smooth muscle tissue of small intestine" EXACT [] is_a: UBERON:0004221 ! intestine smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001168 ! wall of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0004240 @@ -17513,8 +17517,8 @@ synonym: "smooth muscle tissue of gallbladder" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002110 ! gall bladder -relationship: BFO:0000050 UBERON:0002110 ! gall bladder +intersection_of: BFO:0000050 UBERON:0002110 ! part of gall bladder +relationship: BFO:0000050 UBERON:0002110 ! part of gall bladder [Term] id: UBERON:0004242 @@ -17546,8 +17550,8 @@ synonym: "smooth muscle tissue of bronchial trunk" EXACT [] synonym: "smooth muscle tissue of bronchus" EXACT [] is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0004243 @@ -17573,7 +17577,7 @@ synonym: "substantia muscularis prostatae" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0008715 ! muscle tissue of prostate intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0004245 @@ -17590,8 +17594,8 @@ synonym: "smooth muscle tissue of fallopian tube" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0003889 ! fallopian tube -relationship: BFO:0000050 UBERON:0003889 ! fallopian tube +intersection_of: BFO:0000050 UBERON:0003889 ! part of fallopian tube +relationship: BFO:0000050 UBERON:0003889 ! part of fallopian tube [Term] id: UBERON:0004246 @@ -17606,8 +17610,8 @@ synonym: "smooth muscle of outflow tract" EXACT [] synonym: "smooth muscle tissue of outflow tract" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: BFO:0000050 UBERON:0004145 ! outflow tract +intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004247 @@ -17619,7 +17623,7 @@ synonym: "dorsal region bone" RELATED [] is_a: UBERON:0001474 ! bone element is_a: UBERON:0005174 ! dorsal region element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004248 @@ -17639,9 +17643,9 @@ synonym: "toe bone" EXACT [] synonym: "toe bone organ" EXACT [] is_a: UBERON:0012359 ! pedal digitopodium bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:5101466 ! pedal digit digitopodial skeleton +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:5101466 ! part of pedal digit digitopodial skeleton [Term] id: UBERON:0004249 @@ -17655,9 +17659,9 @@ synonym: "hand digit bone" EXACT [] synonym: "hand digit bone" NARROW [] is_a: UBERON:0012358 ! manual digitopodium bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:5102389 ! part of manual digit digitopodial skeleton [Term] id: UBERON:0004250 @@ -17666,8 +17670,8 @@ def: "A bone that is part of a forelimb stylopod [Automatically generated defini synonym: "humerus" NARROW [] is_a: UBERON:0003460 ! arm bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0004252 @@ -17678,8 +17682,8 @@ synonym: "thigh muscle" EXACT [] synonym: "upper leg muscle" EXACT [] is_a: UBERON:0001383 ! muscle of leg intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0004463 ! musculature of hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0004463 ! part of musculature of hindlimb stylopod [Term] id: UBERON:0004253 @@ -17691,8 +17695,8 @@ synonym: "muscle organ of skin" EXACT [] synonym: "skin muscle organ" EXACT [] is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0002416 ! integumental system -relationship: BFO:0000050 UBERON:0002416 ! integumental system +intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system +relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0004255 @@ -17705,8 +17709,8 @@ synonym: "upper arm muscle" EXACT [] synonym: "wing stylopod muscle" NARROW [] is_a: UBERON:0001499 ! muscle of arm intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0014791 ! musculature of forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0014791 ! part of musculature of forelimb stylopod [Term] id: UBERON:0004257 @@ -17721,8 +17725,8 @@ synonym: "hindlimb stylopod blood vessel" EXACT [] synonym: "thigh blood vessel" EXACT [] is_a: UBERON:0003503 ! leg blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0004258 @@ -17731,8 +17735,8 @@ def: "A blood vessel that is part of a back [Automatically generated definition] synonym: "blood vessel of back" EXACT [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004260 @@ -17741,8 +17745,8 @@ def: "A blood vessel that is part of a forelimb stylopod [Automatically generate synonym: "forelimb stylopod blood vessel" EXACT [] is_a: UBERON:0003507 ! arm blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0004262 @@ -17755,8 +17759,8 @@ synonym: "skin of upper leg" EXACT [] synonym: "thigh skin" RELATED [] is_a: UBERON:0001511 ! skin of leg intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0004263 @@ -17767,8 +17771,8 @@ synonym: "skin of arm stylopod" EXACT [] synonym: "skin of upper arm" EXACT [] is_a: UBERON:0002427 ! arm skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0004265 @@ -17785,8 +17789,8 @@ synonym: "outflow tract heart myocardium" EXACT [] synonym: "outflow tract muscle of heart" EXACT [] is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium -intersection_of: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: BFO:0000050 UBERON:0004145 ! outflow tract +intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004266 @@ -17794,9 +17798,9 @@ name: upper leg connective tissue def: "A portion of connective tissue that is part of a hindlimb stylopod [Automatically generated definition]." [] is_a: UBERON:0003569 ! leg connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: RO:0002202 UBERON:0005254 ! upper leg mesenchyme +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: RO:0002202 UBERON:0005254 ! develops_from upper leg mesenchyme [Term] id: UBERON:0004267 @@ -17805,8 +17809,8 @@ def: "A portion of connective tissue that is part of a back [Automatically gener synonym: "mesenchyne of back" RELATED [] is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004269 @@ -17814,9 +17818,9 @@ name: upper arm connective tissue def: "A portion of connective tissue that is part of a forelimb stylopod [Automatically generated definition]." [] is_a: UBERON:0003573 ! arm connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: RO:0002202 UBERON:0005258 ! upper arm mesenchyme +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: RO:0002202 UBERON:0005258 ! develops_from upper arm mesenchyme [Term] id: UBERON:0004271 @@ -17826,8 +17830,8 @@ synonym: "pericardium of outflow tract" EXACT [] is_a: UBERON:0002407 ! pericardium is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002407 ! pericardium -intersection_of: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: BFO:0000050 UBERON:0004145 ! outflow tract +intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004273 @@ -17855,8 +17859,8 @@ synonym: "suture of cranium of articulatio cartilaginea" EXACT [] synonym: "suture of cranium of cartilaginous joint" EXACT [] is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture -intersection_of: BFO:0000050 UBERON:0002213 ! cartilaginous joint -relationship: BFO:0000050 UBERON:0002213 ! cartilaginous joint +intersection_of: BFO:0000050 UBERON:0002213 ! part of cartilaginous joint +relationship: BFO:0000050 UBERON:0002213 ! part of cartilaginous joint [Term] id: UBERON:0004274 @@ -17880,8 +17884,8 @@ synonym: "lateral ventricle epithelium of choroid plexus" EXACT [] is_a: UBERON:0003911 ! choroid plexus epithelium is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002307 ! choroid plexus of lateral ventricle -relationship: BFO:0000050 UBERON:0002307 ! choroid plexus of lateral ventricle +intersection_of: BFO:0000050 UBERON:0002307 ! part of choroid plexus of lateral ventricle +relationship: BFO:0000050 UBERON:0002307 ! part of choroid plexus of lateral ventricle [Term] id: UBERON:0004276 @@ -17905,8 +17909,8 @@ synonym: "fourth ventricle epithelium of choroid plexus" EXACT [] is_a: UBERON:0003911 ! choroid plexus epithelium is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003911 ! choroid plexus epithelium -intersection_of: BFO:0000050 UBERON:0002422 ! fourth ventricle -relationship: BFO:0000050 UBERON:0002290 ! choroid plexus of fourth ventricle +intersection_of: BFO:0000050 UBERON:0002422 ! part of fourth ventricle +relationship: BFO:0000050 UBERON:0002290 ! part of choroid plexus of fourth ventricle [Term] id: UBERON:0004277 @@ -17915,8 +17919,8 @@ def: "A muscle that is part of the eye region." [] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0004288 @@ -17926,8 +17930,8 @@ synonym: "set of all bones" EXACT [] synonym: "set of bones of body" EXACT [] is_a: UBERON:0034925 ! anatomical collection disjoint_from: UBERON:0004770 ! articular system -relationship: BFO:0000050 UBERON:0001434 ! skeletal system -relationship: BFO:0000051 UBERON:0004765 ! skeletal element +relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system +relationship: BFO:0000051 UBERON:0004765 ! has part skeletal element [Term] id: UBERON:0004290 @@ -17937,7 +17941,7 @@ synonym: "dermamyotome" RELATED [] synonym: "dermomyotomes" RELATED [] is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0016888 ! transitional anatomical structure -relationship: RO:0002202 UBERON:0002329 ! somite +relationship: RO:0002202 UBERON:0002329 ! develops_from somite [Term] id: UBERON:0004291 @@ -17946,8 +17950,8 @@ def: "A cone-like structure that is formed when myocardial progenitor cells of t synonym: "heart cone" EXACT [] synonym: "rudimentary heart" EXACT [] is_a: UBERON:0012275 ! meso-epithelium -relationship: RO:0002202 UBERON:0003084 ! heart primordium -relationship: RO:0002202 UBERON:0004139 ! cardiogenic plate +relationship: RO:0002202 UBERON:0003084 ! develops_from heart primordium +relationship: RO:0002202 UBERON:0004139 ! develops_from cardiogenic plate [Term] id: UBERON:0004294 @@ -17957,8 +17961,8 @@ synonym: "renal glomerulus capillary endothelium" EXACT [] is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004189 ! glomerular endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0004212 ! glomerular capillary -relationship: BFO:0000050 UBERON:0004212 ! glomerular capillary +intersection_of: BFO:0000050 UBERON:0004212 ! part of glomerular capillary +relationship: BFO:0000050 UBERON:0004212 ! part of glomerular capillary [Term] id: UBERON:0004296 @@ -17968,8 +17972,8 @@ synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [] is_a: UBERON:0004225 ! respiratory system smooth muscle is_a: UBERON:0004232 ! lymphatic vessel smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0003456 ! respiratory system lymphatic vessel -relationship: BFO:0000050 UBERON:0003456 ! respiratory system lymphatic vessel +intersection_of: BFO:0000050 UBERON:0003456 ! part of respiratory system lymphatic vessel +relationship: BFO:0000050 UBERON:0003456 ! part of respiratory system lymphatic vessel [Term] id: UBERON:0004297 @@ -17979,8 +17983,8 @@ synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [] is_a: UBERON:0004225 ! respiratory system smooth muscle is_a: UBERON:0004237 ! blood vessel smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0003504 ! respiratory system blood vessel -relationship: BFO:0000050 UBERON:0003504 ! respiratory system blood vessel +intersection_of: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel +relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel [Term] id: UBERON:0004340 @@ -17989,7 +17993,7 @@ def: "A membranous sac that develops from the posterior part of the alimentary c synonym: "allantoic bud" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane -relationship: RO:0002202 UBERON:0000162 ! cloaca +relationship: RO:0002202 UBERON:0000162 ! develops_from cloaca [Term] id: UBERON:0004345 @@ -17997,8 +18001,8 @@ name: trophectoderm def: "outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition" [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue -relationship: BFO:0000050 UBERON:0005631 ! extraembryonic membrane -relationship: RO:0002202 UBERON:0000085 ! morula +relationship: BFO:0000050 UBERON:0005631 ! part of extraembryonic membrane +relationship: RO:0002202 UBERON:0000085 ! develops_from morula [Term] id: UBERON:0004347 @@ -18023,8 +18027,8 @@ synonym: "AER" RELATED [] synonym: "apical epidermal ridge" EXACT [] synonym: "crista ectodermalis apicalis" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000924 ! ectoderm -relationship: BFO:0000050 UBERON:0004357 ! paired limb/fin bud +relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm +relationship: BFO:0000050 UBERON:0004357 ! part of paired limb/fin bud [Term] id: UBERON:0004357 @@ -18035,7 +18039,7 @@ synonym: "paired appendage bud" EXACT [] synonym: "paired limb/fin bud" EXACT [] is_a: UBERON:0003102 ! surface structure is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000051 UBERON:0004356 ! apical ectodermal ridge +relationship: BFO:0000051 UBERON:0004356 ! has part apical ectodermal ridge [Term] id: UBERON:0004362 @@ -18075,8 +18079,8 @@ is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002539 ! pharyngeal arch -relationship: BFO:0000050 UBERON:0007303 ! pharyngeal vasculature +relationship: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch +relationship: BFO:0000050 UBERON:0007303 ! part of pharyngeal vasculature [Term] id: UBERON:0004370 @@ -18094,7 +18098,7 @@ synonym: "lamina limitans anterior corneae" EXACT [] synonym: "Reichert's membrane" RELATED [] is_a: UBERON:0005769 ! basement membrane of epithelium is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0000964 ! cornea +relationship: BFO:0000050 UBERON:0000964 ! part of cornea [Term] id: UBERON:0004375 @@ -18106,8 +18110,8 @@ synonym: "bone of free segment of appendicular skeleton" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0004708 ! paired limb/fin -relationship: BFO:0000050 UBERON:0011582 ! paired limb/fin skeleton +intersection_of: BFO:0000050 UBERON:0004708 ! part of paired limb/fin +relationship: BFO:0000050 UBERON:0011582 ! part of paired limb/fin skeleton [Term] id: UBERON:0004378 @@ -18115,7 +18119,7 @@ name: proximal metaphysis def: "A metaphysis that is in the proximal side of a diaphysis." [] synonym: "proximal diaphyseal end of long bone" EXACT [] is_a: UBERON:0001438 ! metaphysis -relationship: BFO:0000050 UBERON:0004769 ! diaphysis +relationship: BFO:0000050 UBERON:0004769 ! part of diaphysis [Term] id: UBERON:0004380 @@ -18123,7 +18127,7 @@ name: proximal epiphysis def: "An epiphysis that is on the proximal side of the bone." [] synonym: "proximal end of long bone" EXACT [] is_a: UBERON:0001437 ! epiphysis -relationship: BFO:0000050 UBERON:0001474 ! bone element +relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0004381 @@ -18134,7 +18138,7 @@ synonym: "limb skeleton" EXACT [] synonym: "set of bones of limb" EXACT [] is_a: UBERON:0010712 ! limb skeleton subdivision is_a: UBERON:0011582 ! paired limb/fin skeleton -relationship: BFO:0000050 UBERON:0002101 ! limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0004382 @@ -18144,8 +18148,8 @@ synonym: "humeral epiphysis" EXACT [] is_a: UBERON:0001437 ! epiphysis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis -intersection_of: BFO:0000050 UBERON:0000976 ! humerus -relationship: BFO:0000050 UBERON:0000976 ! humerus +intersection_of: BFO:0000050 UBERON:0000976 ! part of humerus +relationship: BFO:0000050 UBERON:0000976 ! part of humerus [Term] id: UBERON:0004384 @@ -18155,8 +18159,8 @@ synonym: "femoral epiphysis" EXACT [] is_a: UBERON:0001437 ! epiphysis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis -intersection_of: BFO:0000050 UBERON:0000981 ! femur -relationship: BFO:0000050 UBERON:0000981 ! femur +intersection_of: BFO:0000050 UBERON:0000981 ! part of femur +relationship: BFO:0000050 UBERON:0000981 ! part of femur [Term] id: UBERON:0004387 @@ -18166,8 +18170,8 @@ synonym: "epiphysis of phalanx of finger" EXACT [] synonym: "epiphysis of phalanx of hand" RELATED [] is_a: UBERON:0004446 ! epiphysis of phalanx intersection_of: UBERON:0001437 ! epiphysis -intersection_of: BFO:0000050 UBERON:0001436 ! phalanx of manus -relationship: BFO:0000050 UBERON:0001436 ! phalanx of manus +intersection_of: BFO:0000050 UBERON:0001436 ! part of phalanx of manus +relationship: BFO:0000050 UBERON:0001436 ! part of phalanx of manus [Term] id: UBERON:0004400 @@ -18175,8 +18179,8 @@ name: bone tissue of epiphysis def: "A portion of bone tissue that is part of a epiphysis [Automatically generated definition]." [] is_a: UBERON:0005808 ! bone tissue of long bone intersection_of: UBERON:0002481 ! bone tissue -intersection_of: BFO:0000050 UBERON:0001437 ! epiphysis -relationship: BFO:0000050 UBERON:0001437 ! epiphysis +intersection_of: BFO:0000050 UBERON:0001437 ! part of epiphysis +relationship: BFO:0000050 UBERON:0001437 ! part of epiphysis [Term] id: UBERON:0004402 @@ -18184,8 +18188,8 @@ name: bone tissue of proximal epiphysis def: "A portion of bone tissue that is part of a proximal epiphysis [Automatically generated definition]." [] is_a: UBERON:0004400 ! bone tissue of epiphysis intersection_of: UBERON:0002481 ! bone tissue -intersection_of: BFO:0000050 UBERON:0004380 ! proximal epiphysis -relationship: BFO:0000050 UBERON:0004380 ! proximal epiphysis +intersection_of: BFO:0000050 UBERON:0004380 ! part of proximal epiphysis +relationship: BFO:0000050 UBERON:0004380 ! part of proximal epiphysis [Term] id: UBERON:0004403 @@ -18194,8 +18198,8 @@ def: "A periosteum that is part of a epiphysis [Automatically generated definiti synonym: "epiphysis periosteum" EXACT [] is_a: UBERON:0016896 ! periosteum of long bone intersection_of: UBERON:0002515 ! periosteum -intersection_of: BFO:0000050 UBERON:0001437 ! epiphysis -relationship: BFO:0000050 UBERON:0001437 ! epiphysis +intersection_of: BFO:0000050 UBERON:0001437 ! part of epiphysis +relationship: BFO:0000050 UBERON:0001437 ! part of epiphysis [Term] id: UBERON:0004411 @@ -18211,7 +18215,7 @@ synonym: "upper extremity of humerus" RELATED [] is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004382 ! epiphysis of humerus intersection_of: UBERON:0004380 ! proximal epiphysis -intersection_of: BFO:0000050 UBERON:0000976 ! humerus +intersection_of: BFO:0000050 UBERON:0000976 ! part of humerus [Term] id: UBERON:0004412 @@ -18222,7 +18226,7 @@ synonym: "proximal femoral epiphysis" EXACT [] is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004384 ! epiphysis of femur intersection_of: UBERON:0004380 ! proximal epiphysis -intersection_of: BFO:0000050 UBERON:0000981 ! femur +intersection_of: BFO:0000050 UBERON:0000981 ! part of femur [Term] id: UBERON:0004414 @@ -18236,7 +18240,7 @@ synonym: "proximal epiphysis of phalanx of hand" RELATED [] is_a: UBERON:0004387 ! epiphysis of phalanx of manus is_a: UBERON:0004447 ! proximal epiphysis of phalanx intersection_of: UBERON:0004380 ! proximal epiphysis -intersection_of: BFO:0000050 UBERON:0001436 ! phalanx of manus +intersection_of: BFO:0000050 UBERON:0001436 ! part of phalanx of manus [Term] id: UBERON:0004446 @@ -18245,8 +18249,8 @@ def: "An epiphysis that is part of a phalanx [Automatically generated definition is_a: UBERON:0001437 ! epiphysis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis -intersection_of: BFO:0000050 UBERON:0003221 ! phalanx -relationship: BFO:0000050 UBERON:0003221 ! phalanx +intersection_of: BFO:0000050 UBERON:0003221 ! part of phalanx +relationship: BFO:0000050 UBERON:0003221 ! part of phalanx [Term] id: UBERON:0004447 @@ -18255,7 +18259,7 @@ def: "A proximal epiphysis that is part of a phalanx [Automatically generated de is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004446 ! epiphysis of phalanx intersection_of: UBERON:0004380 ! proximal epiphysis -intersection_of: BFO:0000050 UBERON:0003221 ! phalanx +intersection_of: BFO:0000050 UBERON:0003221 ! part of phalanx [Term] id: UBERON:0004456 @@ -18275,10 +18279,10 @@ synonym: "musculi capitis" EXACT [] synonym: "set of muscles of head" EXACT [] is_a: UBERON:0008229 ! craniocervical region musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0013700 ! axial musculature -relationship: RO:0002202 UBERON:0005253 ! head mesenchyme +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0013700 ! part of axial musculature +relationship: RO:0002202 UBERON:0005253 ! develops_from head mesenchyme [Term] id: UBERON:0004463 @@ -18290,8 +18294,8 @@ synonym: "set of muscles of thigh" EXACT [] synonym: "thigh musculature" EXACT [] is_a: UBERON:0004466 ! musculature of leg intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0004464 @@ -18304,8 +18308,8 @@ synonym: "set of muscles of thorax" EXACT [] synonym: "thoracic musculature" EXACT [] is_a: UBERON:0004479 ! musculature of trunk intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0004466 @@ -18314,8 +18318,8 @@ def: "Any collection of muscles that is part of a lower leg or upper leg [Automa synonym: "leg muscle system" EXACT [] is_a: UBERON:0004482 ! musculature of lower limb intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0000978 ! leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0004469 @@ -18327,8 +18331,8 @@ synonym: "musculi dorsi" EXACT [] synonym: "set of muscles of back" EXACT [] is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004470 @@ -18345,8 +18349,8 @@ synonym: "set of muscles of pelvis" RELATED [] is_a: UBERON:0004479 ! musculature of trunk is_a: UBERON:0014792 ! musculature of pelvic complex intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0001271 ! pelvic girdle region -relationship: BFO:0000050 UBERON:0001271 ! pelvic girdle region +intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region +relationship: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region [Term] id: UBERON:0004471 @@ -18358,8 +18362,8 @@ synonym: "pectoral girdle musculature" EXACT [] synonym: "set of muscles of pectoral girdle" EXACT [] is_a: UBERON:0014793 ! musculature of pectoral complex intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000050 UBERON:0001421 ! pectoral girdle region +intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region +relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region [Term] id: UBERON:0004473 @@ -18373,8 +18377,8 @@ synonym: "set of facial muscles" RELATED [] synonym: "set of muscles of face" RELATED [] is_a: UBERON:0004461 ! musculature of head intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0001456 ! face +intersection_of: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:0004474 @@ -18386,8 +18390,8 @@ synonym: "muscle group of arm" EXACT [] synonym: "set of muscles of arm" EXACT [] is_a: UBERON:0004481 ! musculature of upper limb intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0001460 ! arm -relationship: BFO:0000050 UBERON:0001460 ! arm +intersection_of: BFO:0000050 UBERON:0001460 ! part of arm +relationship: BFO:0000050 UBERON:0001460 ! part of arm [Term] id: UBERON:0004475 @@ -18415,8 +18419,8 @@ synonym: "muscular system of trunk" RELATED [] synonym: "set of muscles of trunk" EXACT [] is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0004480 @@ -18428,8 +18432,8 @@ synonym: "muscle group of limb" EXACT [] synonym: "set of muscles of limb" EXACT [] is_a: UBERON:0007271 ! appendage musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0004481 @@ -18442,8 +18446,8 @@ synonym: "set of muscles of free upper limb" EXACT [] is_a: UBERON:0004480 ! musculature of limb is_a: UBERON:0007269 ! pectoral appendage musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0004482 @@ -18456,8 +18460,8 @@ synonym: "set of muscles of free lower limb" EXACT [] is_a: UBERON:0004480 ! musculature of limb is_a: UBERON:0007270 ! pelvic appendage musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0004488 @@ -18469,8 +18473,8 @@ synonym: "musculature of foot" EXACT [] synonym: "set of muscles of foot" EXACT [] is_a: UBERON:0004482 ! musculature of lower limb intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0004489 @@ -18482,8 +18486,8 @@ synonym: "musculature of hand" EXACT [] synonym: "set of muscles of hand" EXACT [] is_a: UBERON:0004481 ! musculature of upper limb intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0004490 @@ -18495,8 +18499,8 @@ synonym: "atrial myocardium" RELATED [] synonym: "cardiac atrium muscle" EXACT [] is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002081 ! cardiac atrium -relationship: BFO:0000050 UBERON:0002302 ! myocardium of atrium +intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium +relationship: BFO:0000050 UBERON:0002302 ! part of myocardium of atrium [Term] id: UBERON:0004491 @@ -18508,8 +18512,8 @@ synonym: "interatrial septum muscle" EXACT [] synonym: "interatrial septum myocardium" EXACT [] is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002085 ! interatrial septum -relationship: BFO:0000050 UBERON:0002085 ! interatrial septum +intersection_of: BFO:0000050 UBERON:0002085 ! part of interatrial septum +relationship: BFO:0000050 UBERON:0002085 ! part of interatrial septum [Term] id: UBERON:0004492 @@ -18521,8 +18525,8 @@ synonym: "cardiac septum muscle" EXACT [] synonym: "cardiac septum myocardium" EXACT [] is_a: UBERON:0001133 ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002099 ! cardiac septum -relationship: BFO:0000050 UBERON:0002099 ! cardiac septum +intersection_of: BFO:0000050 UBERON:0002099 ! part of cardiac septum +relationship: BFO:0000050 UBERON:0002099 ! part of cardiac septum [Term] id: UBERON:0004493 @@ -18530,8 +18534,8 @@ name: cardiac muscle tissue of myocardium def: "A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]." [] is_a: UBERON:0001133 ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002349 ! myocardium -relationship: BFO:0000050 UBERON:0002349 ! myocardium +intersection_of: BFO:0000050 UBERON:0002349 ! part of myocardium +relationship: BFO:0000050 UBERON:0002349 ! part of myocardium [Term] id: UBERON:0004510 @@ -18540,8 +18544,8 @@ def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Au synonym: "skeletal muscle tissue of pectoralis major muscle" RELATED [] is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0002381 ! pectoralis major -relationship: BFO:0000050 UBERON:0002381 ! pectoralis major +intersection_of: BFO:0000050 UBERON:0002381 ! part of pectoralis major +relationship: BFO:0000050 UBERON:0002381 ! part of pectoralis major [Term] id: UBERON:0004515 @@ -18550,8 +18554,8 @@ def: "A portion of smooth muscle tissue that is part of a bronchiole [Automatica synonym: "smooth muscle tissue of lobular bronchiole" EXACT [] is_a: UBERON:0004242 ! bronchus smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002186 ! bronchiole -relationship: BFO:0000050 UBERON:0002186 ! bronchiole +intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole +relationship: BFO:0000050 UBERON:0002186 ! part of bronchiole [Term] id: UBERON:0004516 @@ -18559,8 +18563,8 @@ name: smooth muscle tissue of terminal bronchiole def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Automatically generated definition]." [] is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002187 ! terminal bronchiole -relationship: BFO:0000050 UBERON:0002187 ! terminal bronchiole +intersection_of: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole +relationship: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole [Term] id: UBERON:0004517 @@ -18568,8 +18572,8 @@ name: smooth muscle tissue of respiratory bronchiole def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Automatically generated definition]." [] is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002188 ! respiratory bronchiole -relationship: BFO:0000050 UBERON:0002188 ! respiratory bronchiole +intersection_of: BFO:0000050 UBERON:0002188 ! part of respiratory bronchiole +relationship: BFO:0000050 UBERON:0002188 ! part of respiratory bronchiole [Term] id: UBERON:0004520 @@ -18578,7 +18582,7 @@ def: "A portion of striated muscle tissue that is part of a prostate gland [Auto is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0008715 ! muscle tissue of prostate intersection_of: UBERON:0002036 ! striated muscle tissue -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0004521 @@ -18588,8 +18592,8 @@ synonym: "muscular organ vasculature" EXACT [] is_a: UBERON:0004522 ! vasculature of musculoskeletal system is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0001630 ! muscle organ -relationship: BFO:0000050 UBERON:0001630 ! muscle organ +intersection_of: BFO:0000050 UBERON:0001630 ! part of muscle organ +relationship: BFO:0000050 UBERON:0001630 ! part of muscle organ [Term] id: UBERON:0004522 @@ -18597,8 +18601,8 @@ name: vasculature of musculoskeletal system def: "A vasculature that is part of a musculoskeletal system [Automatically generated definition]." [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002204 ! musculoskeletal system -relationship: BFO:0000050 UBERON:0002204 ! musculoskeletal system +intersection_of: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system +relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system [Term] id: UBERON:0004529 @@ -18628,7 +18632,7 @@ synonym: "shelf" NARROW [] synonym: "shelves" NARROW [] synonym: "spine" RELATED [] is_a: UBERON:0034768 ! morphological feature -relationship: BFO:0000050 UBERON:0000062 ! organ +relationship: BFO:0000050 UBERON:0000062 ! part of organ [Term] id: UBERON:0004535 @@ -18638,12 +18642,12 @@ synonym: "CV system" RELATED [] synonym: "Herz und Gefaesssystem" RELATED [] is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system -intersection_of: BFO:0000050 UBERON:0001009 ! circulatory system -intersection_of: BFO:0000051 UBERON:0000948 ! heart -intersection_of: BFO:0000051 UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0001009 ! circulatory system -relationship: BFO:0000051 UBERON:0000948 ! heart -relationship: BFO:0000051 UBERON:0001981 ! blood vessel +intersection_of: BFO:0000050 UBERON:0001009 ! part of circulatory system +intersection_of: BFO:0000051 UBERON:0000948 ! has part heart +intersection_of: BFO:0000051 UBERON:0001981 ! has part blood vessel +relationship: BFO:0000050 UBERON:0001009 ! part of circulatory system +relationship: BFO:0000051 UBERON:0000948 ! has part heart +relationship: BFO:0000051 UBERON:0001981 ! has part blood vessel [Term] id: UBERON:0004536 @@ -18658,9 +18662,9 @@ synonym: "set of lymphatic vessels" EXACT [] synonym: "trunci et ductus lymphatici" EXACT [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000051 UBERON:0002391 ! lymph -relationship: BFO:0000050 UBERON:0006558 ! lymphatic part of lymphoid system -relationship: BFO:0000051 UBERON:0002391 ! lymph +intersection_of: BFO:0000051 UBERON:0002391 ! has part lymph +relationship: BFO:0000050 UBERON:0006558 ! part of lymphatic part of lymphoid system +relationship: BFO:0000051 UBERON:0002391 ! has part lymph [Term] id: UBERON:0004537 @@ -18672,7 +18676,7 @@ synonym: "blood vessel system" RELATED [] synonym: "blood vessels" RELATED [] synonym: "set of blood vessels" EXACT [] is_a: UBERON:0002049 ! vasculature -relationship: BFO:0000051 UBERON:0001981 ! blood vessel +relationship: BFO:0000051 UBERON:0001981 ! has part blood vessel [Term] id: UBERON:0004544 @@ -18685,8 +18689,8 @@ is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000485 ! simple columnar epithelium -intersection_of: BFO:0000050 UBERON:0001301 ! epididymis -relationship: BFO:0000050 UBERON:0001301 ! epididymis +intersection_of: BFO:0000050 UBERON:0001301 ! part of epididymis +relationship: BFO:0000050 UBERON:0001301 ! part of epididymis [Term] id: UBERON:0004550 @@ -18711,8 +18715,8 @@ synonym: "LES" RELATED [] synonym: "lower esophageal sphincter" RELATED [] is_a: UBERON:0011185 ! gastrointestinal sphincter intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0001162 ! cardia of stomach -relationship: BFO:0000050 UBERON:0001162 ! cardia of stomach +intersection_of: BFO:0000050 UBERON:0001162 ! part of cardia of stomach +relationship: BFO:0000050 UBERON:0001162 ! part of cardia of stomach [Term] id: UBERON:0004552 @@ -18721,8 +18725,8 @@ def: "An artery that is part of a digit [Automatically generated definition]." [ is_a: UBERON:0001637 ! artery is_a: UBERON:0003514 ! limb blood vessel intersection_of: UBERON:0001637 ! artery -intersection_of: BFO:0000050 UBERON:0002544 ! digit -relationship: BFO:0000050 UBERON:0002544 ! digit +intersection_of: BFO:0000050 UBERON:0002544 ! part of digit +relationship: BFO:0000050 UBERON:0002544 ! part of digit [Term] id: UBERON:0004553 @@ -18734,8 +18738,8 @@ synonym: "wing digital artery" NARROW [] is_a: UBERON:0003522 ! manual digit blood vessel is_a: UBERON:0004552 ! digital artery intersection_of: UBERON:0004552 ! digital artery -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002389 ! manual digit +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit [Term] id: UBERON:0004554 @@ -18746,7 +18750,7 @@ synonym: "hindlimb digital arteries" EXACT [] is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0004552 ! digital artery intersection_of: UBERON:0004552 ! digital artery -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0004571 @@ -18754,15 +18758,15 @@ name: systemic arterial system def: "The part of the arterial system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [] synonym: "systemic arterial circulatory system" EXACT [] is_a: UBERON:0007798 ! vascular system -relationship: BFO:0000050 UBERON:0004572 ! arterial system +relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0004572 name: arterial system def: "The part of the cardiovascular system consisting of all arteries." [] is_a: UBERON:0007798 ! vascular system -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system -relationship: BFO:0000051 UBERON:0001637 ! artery +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system +relationship: BFO:0000051 UBERON:0001637 ! has part artery [Term] id: UBERON:0004573 @@ -18771,8 +18775,8 @@ def: "An artery of the systemic circulation, which is the part of the cardiovasc synonym: "systemic arterial subtree" EXACT [] is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery -intersection_of: BFO:0000050 UBERON:0004571 ! systemic arterial system -relationship: BFO:0000050 UBERON:0004571 ! systemic arterial system +intersection_of: BFO:0000050 UBERON:0004571 ! part of systemic arterial system +relationship: BFO:0000050 UBERON:0004571 ! part of systemic arterial system [Term] id: UBERON:0004581 @@ -18780,7 +18784,7 @@ name: systemic venous system def: "The part of the venous system that drains the general body tissues[Kardong]" [] synonym: "systemic venous circulatory system" EXACT [] is_a: UBERON:0002049 ! vasculature -relationship: BFO:0000050 UBERON:0004582 ! venous system +relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0004582 @@ -18788,7 +18792,7 @@ name: venous system def: "The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions." [] synonym: "vein system" EXACT [] is_a: UBERON:0007798 ! vascular system -relationship: BFO:0000051 UBERON:0001638 ! vein +relationship: BFO:0000051 UBERON:0001638 ! has part vein [Term] id: UBERON:0004590 @@ -18804,8 +18808,8 @@ name: blood vessel endothelium def: "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart" [] is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0001981 ! blood vessel +intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel +relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel [Term] id: UBERON:0004639 @@ -18819,8 +18823,8 @@ synonym: "arteriola glomerularis afferens renis" EXACT [] synonym: "kidney afferent arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! kidney arterial blood vessel -relationship: BFO:0000050 UBERON:0001229 ! renal corpuscle -relationship: BFO:0000050 UBERON:0004723 ! interlobular artery +relationship: BFO:0000050 UBERON:0001229 ! part of renal corpuscle +relationship: BFO:0000050 UBERON:0004723 ! part of interlobular artery [Term] id: UBERON:0004640 @@ -18834,7 +18838,7 @@ synonym: "efferent glomerular arteriole of kidney" EXACT [] synonym: "kidney efferent arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! kidney arterial blood vessel -relationship: BFO:0000050 UBERON:0001229 ! renal corpuscle +relationship: BFO:0000050 UBERON:0001229 ! part of renal corpuscle [Term] id: UBERON:0004641 @@ -18851,8 +18855,8 @@ synonym: "tunica fibrosa splenica" EXACT [] is_a: UBERON:0003893 ! capsule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003893 ! capsule -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: BFO:0000050 UBERON:0002106 ! spleen +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0004645 @@ -18870,8 +18874,8 @@ is_a: UBERON:0000365 ! urothelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000365 ! urothelium -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001259 ! mucosa of urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001259 ! part of mucosa of urinary bladder [Term] id: UBERON:0004647 @@ -18884,7 +18888,7 @@ synonym: "lobuli hepatis" RELATED [] synonym: "lobulus hepaticus" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure -relationship: BFO:0000050 UBERON:0001280 ! liver parenchyma +relationship: BFO:0000050 UBERON:0001280 ! part of liver parenchyma [Term] id: UBERON:0004652 @@ -18901,8 +18905,8 @@ synonym: "shaft of the humerus" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis -intersection_of: BFO:0000050 UBERON:0000976 ! humerus -relationship: BFO:0000050 UBERON:0000976 ! humerus +intersection_of: BFO:0000050 UBERON:0000976 ! part of humerus +relationship: BFO:0000050 UBERON:0000976 ! part of humerus [Term] id: UBERON:0004663 @@ -18912,8 +18916,8 @@ synonym: "aortic wall" EXACT [] synonym: "wall of aorta" EXACT [] is_a: UBERON:0035965 ! wall of blood vessel intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0000947 ! aorta +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0004664 @@ -18922,8 +18926,8 @@ def: "the outermost layer of the aorta wall, containing connective tissue and co synonym: "tunica adventitia of aorta" EXACT [] is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0004663 ! aorta wall +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0004663 ! part of aorta wall [Term] id: UBERON:0004665 @@ -18938,8 +18942,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000998 ! seminal vesicle -relationship: BFO:0000050 UBERON:0000998 ! seminal vesicle +intersection_of: BFO:0000050 UBERON:0000998 ! part of seminal vesicle +relationship: BFO:0000050 UBERON:0000998 ! part of seminal vesicle [Term] id: UBERON:0004666 @@ -18960,9 +18964,9 @@ is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005983 ! heart layer is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000158 ! membranous layer -intersection_of: BFO:0000050 UBERON:0002094 ! interventricular septum -relationship: BFO:0000050 UBERON:0002094 ! interventricular septum -relationship: RO:0002202 UBERON:0000095 ! cardiac neural crest +intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum +relationship: BFO:0000050 UBERON:0002094 ! part of interventricular septum +relationship: RO:0002202 UBERON:0000095 ! develops_from cardiac neural crest [Term] id: UBERON:0004667 @@ -18980,8 +18984,8 @@ synonym: "septum membranaceum" EXACT [] synonym: "ventricular muscular septum" EXACT [] is_a: UBERON:0002385 ! muscle tissue intersection_of: UBERON:0002385 ! muscle tissue -intersection_of: BFO:0000050 UBERON:0002094 ! interventricular septum -relationship: BFO:0000050 UBERON:0002094 ! interventricular septum +intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum +relationship: BFO:0000050 UBERON:0002094 ! part of interventricular septum [Term] id: UBERON:0004668 @@ -18993,8 +18997,8 @@ is_a: UBERON:0000161 ! orifice is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000161 ! orifice -intersection_of: BFO:0000050 UBERON:0002422 ! fourth ventricle -relationship: BFO:0000050 UBERON:0002422 ! fourth ventricle +intersection_of: BFO:0000050 UBERON:0002422 ! part of fourth ventricle +relationship: BFO:0000050 UBERON:0002422 ! part of fourth ventricle [Term] id: UBERON:0004681 @@ -19005,7 +19009,7 @@ synonym: "vestibular organ system" EXACT [] synonym: "vestibular system" EXACT [] synonym: "vestibulomotor system" NARROW [] is_a: UBERON:0001032 ! sensory system -relationship: BFO:0000050 UBERON:0002105 ! vestibulo-auditory system +relationship: BFO:0000050 UBERON:0002105 ! part of vestibulo-auditory system [Term] id: UBERON:0004684 @@ -19020,7 +19024,7 @@ synonym: "raphe nucleus" RELATED [] synonym: "raphe of mesenchephalon" RELATED [] synonym: "set of raphe nuclei" RELATED [] is_a: UBERON:0002616 ! regional part of brain -relationship: BFO:0000050 UBERON:0002275 ! reticular formation +relationship: BFO:0000050 UBERON:0002275 ! part of reticular formation [Term] id: UBERON:0004693 @@ -19029,8 +19033,8 @@ def: "the specialized epithelium of the Peyer's patch" [] synonym: "peyer's patch epithelium" EXACT [] is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001211 ! Peyer's patch -relationship: BFO:0000050 UBERON:0001211 ! Peyer's patch +intersection_of: BFO:0000050 UBERON:0001211 ! part of Peyer's patch +relationship: BFO:0000050 UBERON:0001211 ! part of Peyer's patch [Term] id: UBERON:0004695 @@ -19038,8 +19042,8 @@ name: arterial system smooth muscle def: "A portion of smooth muscle tissue that is part of an arterial system [Automatically generated definition]." [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0004572 ! arterial system -relationship: BFO:0000050 UBERON:0004572 ! arterial system +intersection_of: BFO:0000050 UBERON:0004572 ! part of arterial system +relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0004696 @@ -19047,8 +19051,8 @@ name: venous system smooth muscle def: "A portion of smooth muscle tissue that is part of a venous system [Automatically generated definition]." [] is_a: UBERON:0004237 ! blood vessel smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0004582 ! venous system -relationship: BFO:0000050 UBERON:0004582 ! venous system +intersection_of: BFO:0000050 UBERON:0004582 ! part of venous system +relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0004697 @@ -19056,8 +19060,8 @@ name: Peyer's patch germinal center def: "Area of the Peyer's patch where B cells proliferate and differentiate into plasma cells" [] is_a: UBERON:0010754 ! germinal center intersection_of: UBERON:0010754 ! germinal center -intersection_of: BFO:0000050 UBERON:0001211 ! Peyer's patch -relationship: BFO:0000050 UBERON:0001211 ! Peyer's patch +intersection_of: BFO:0000050 UBERON:0001211 ! part of Peyer's patch +relationship: BFO:0000050 UBERON:0001211 ! part of Peyer's patch [Term] id: UBERON:0004699 @@ -19065,8 +19069,8 @@ name: outflow tract endothelium def: "An endothelium that is part of a outflow tract [Automatically generated definition]." [] is_a: UBERON:0008307 ! heart endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: BFO:0000050 UBERON:0004145 ! outflow tract +intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004700 @@ -19074,8 +19078,8 @@ name: arterial system endothelium def: "An endothelium that is part of an arterial system [Automatically generated definition]." [] is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0004572 ! arterial system -relationship: BFO:0000050 UBERON:0004572 ! arterial system +intersection_of: BFO:0000050 UBERON:0004572 ! part of arterial system +relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0004701 @@ -19083,8 +19087,8 @@ name: venous system endothelium def: "An endothelium that is part of a venous system [Automatically generated definition]." [] is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0004582 ! venous system -relationship: BFO:0000050 UBERON:0004582 ! venous system +intersection_of: BFO:0000050 UBERON:0004582 ! part of venous system +relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0004702 @@ -19093,8 +19097,8 @@ def: "A blood vessel endothelium that is part of a respiratory system [Automatic is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004807 ! respiratory system epithelium intersection_of: UBERON:0004638 ! blood vessel endothelium -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003504 ! respiratory system blood vessel +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel [Term] id: UBERON:0004706 @@ -19102,7 +19106,7 @@ name: bulbus cordis def: "a transient fetal dilation of the distal (or cranial) heart tube located where the arterial trunk joins the ventral roots of the aortic arches" [] synonym: "primitive right ventricle endocardium" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000948 ! heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0004708 @@ -19117,13 +19121,13 @@ synonym: "pectoral or pelvic appendage" EXACT [] synonym: "pelvic/pectoral appendage" EXACT [] is_a: UBERON:0000026 ! appendage intersection_of: UBERON:0000026 ! appendage -intersection_of: BFO:0000050 UBERON:0010707 ! appendage girdle complex -relationship: BFO:0000050 UBERON:0010707 ! appendage girdle complex -relationship: BFO:0000051 UBERON:0000014 ! zone of skin -relationship: BFO:0000051 UBERON:0001015 ! musculature -relationship: BFO:0000051 UBERON:0002049 ! vasculature -relationship: BFO:0000051 UBERON:0011582 ! paired limb/fin skeleton -relationship: RO:0002202 UBERON:0004357 ! paired limb/fin bud +intersection_of: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex +relationship: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex +relationship: BFO:0000051 UBERON:0000014 ! has part zone of skin +relationship: BFO:0000051 UBERON:0001015 ! has part musculature +relationship: BFO:0000051 UBERON:0002049 ! has part vasculature +relationship: BFO:0000051 UBERON:0011582 ! has part paired limb/fin skeleton +relationship: RO:0002202 UBERON:0004357 ! develops_from paired limb/fin bud [Term] id: UBERON:0004709 @@ -19137,11 +19141,11 @@ synonym: "posterior limb/fin" EXACT [] synonym: "posterior paired appendage" EXACT [] is_a: UBERON:0004708 ! paired limb/fin intersection_of: UBERON:0004708 ! paired limb/fin -intersection_of: BFO:0000050 UBERON:0010709 ! pelvic complex +intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex disjoint_from: UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0010709 ! pelvic complex -relationship: BFO:0000051 UBERON:0007273 ! pelvic appendage skeleton -relationship: RO:0002202 UBERON:0005420 ! pelvic appendage bud +relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex +relationship: BFO:0000051 UBERON:0007273 ! has part pelvic appendage skeleton +relationship: RO:0002202 UBERON:0005420 ! develops_from pelvic appendage bud [Term] id: UBERON:0004710 @@ -19156,10 +19160,10 @@ synonym: "forelimb/pectoral fin" EXACT [] synonym: "pectoral limb/fin" EXACT [] is_a: UBERON:0004708 ! paired limb/fin intersection_of: UBERON:0004708 ! paired limb/fin -intersection_of: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000051 UBERON:0007272 ! pectoral appendage skeleton -relationship: RO:0002202 UBERON:0005419 ! pectoral appendage bud +intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000051 UBERON:0007272 ! has part pectoral appendage skeleton +relationship: RO:0002202 UBERON:0005419 ! develops_from pectoral appendage bud [Term] id: UBERON:0004715 @@ -19172,9 +19176,9 @@ synonym: "anulus fibrosus of intervertebral disk" EXACT [] synonym: "fibrous ring of intervertebral disc" RELATED [] is_a: UBERON:0006444 ! annulus fibrosus intersection_of: UBERON:0006444 ! annulus fibrosus -intersection_of: BFO:0000050 UBERON:0001066 ! intervertebral disk +intersection_of: BFO:0000050 UBERON:0001066 ! part of intervertebral disk disjoint_from: UBERON:0006008 ! fibrous ring of heart -relationship: BFO:0000050 UBERON:0001066 ! intervertebral disk +relationship: BFO:0000050 UBERON:0001066 ! part of intervertebral disk [Term] id: UBERON:0004716 @@ -19182,8 +19186,8 @@ name: conceptus def: "The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." [] synonym: "embryo plus adnexa" EXACT [] is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000051 UBERON:0002050 ! embryonic structure -relationship: BFO:0000051 UBERON:0016887 ! entire extraembryonic component +relationship: BFO:0000051 UBERON:0002050 ! has part embryonic structure +relationship: BFO:0000051 UBERON:0016887 ! has part entire extraembryonic component [Term] id: UBERON:0004719 @@ -19208,7 +19212,7 @@ synonym: "cristae ampullares" RELATED [] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0004043 ! semicircular canal ampulla +relationship: BFO:0000050 UBERON:0004043 ! part of semicircular canal ampulla [Term] id: UBERON:0004723 @@ -19255,8 +19259,8 @@ synonym: "neuromeres" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system intersection_of: UBERON:0004732 ! segmental subdivision of nervous system -intersection_of: BFO:0000050 UBERON:0001049 ! neural tube -relationship: BFO:0000050 UBERON:0001049 ! neural tube +intersection_of: BFO:0000050 UBERON:0001049 ! part of neural tube +relationship: BFO:0000050 UBERON:0001049 ! part of neural tube [Term] id: UBERON:0004732 @@ -19265,8 +19269,8 @@ def: "Any segmental subdivision of a nervous system. Includes metameric developm synonym: "neuromere" RELATED [] is_a: UBERON:0000063 ! organ subunit intersection_of: UBERON:0000063 ! organ subunit -intersection_of: BFO:0000050 UBERON:0001016 ! nervous system -relationship: BFO:0000050 UBERON:0001016 ! nervous system +intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0004733 @@ -19278,8 +19282,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000063 ! organ subunit -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0004734 @@ -19295,7 +19299,7 @@ synonym: "trilaminar disc" RELATED [] synonym: "trilaminar disk" RELATED [] synonym: "trilaminar germ" RELATED [] is_a: UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0000307 ! blastula +relationship: RO:0002202 UBERON:0000307 ! develops_from blastula [Term] id: UBERON:0004736 @@ -19304,8 +19308,8 @@ def: "glomerulus of the mature vertebrate kidney, or metanephros." [] synonym: "glomerulus of metanephros" EXACT [] is_a: UBERON:0000074 ! renal glomerulus intersection_of: UBERON:0000074 ! renal glomerulus -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0004737 @@ -19316,10 +19320,10 @@ synonym: "metanephric collecting tubule" RELATED [] is_a: UBERON:0001232 ! collecting duct of renal tubule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001232 ! collecting duct of renal tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme -relationship: RO:0002202 UBERON:0014706 ! primitive renal collecting duct system +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme +relationship: RO:0002202 UBERON:0014706 ! develops_from primitive renal collecting duct system [Term] id: UBERON:0004738 @@ -19328,8 +19332,8 @@ def: "juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros. synonym: "juxtaglomerular apparatus of metanephros" EXACT [] is_a: UBERON:0002303 ! juxtaglomerular apparatus intersection_of: UBERON:0002303 ! juxtaglomerular apparatus -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0010533 ! metanephros cortex +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0004739 @@ -19344,9 +19348,9 @@ synonym: "pronephric glomeruli" RELATED [] synonym: "pronephric glomus" RELATED [] is_a: UBERON:0000074 ! renal glomerulus intersection_of: UBERON:0000074 ! renal glomerulus -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0002120 ! pronephros -relationship: RO:0002202 UBERON:0007128 ! glomeral mesenchyme +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: RO:0002202 UBERON:0007128 ! develops_from glomeral mesenchyme [Term] id: UBERON:0004753 @@ -19357,14 +19361,14 @@ synonym: "scapulo-coracoid cartilage" NARROW [] synonym: "scapulocoracoid cartilage" NARROW [] synonym: "scapulocoracoideum" EXACT [] is_a: UBERON:0004765 ! skeletal element -relationship: BFO:0000050 UBERON:0007831 ! pectoral girdle skeleton +relationship: BFO:0000050 UBERON:0007831 ! part of pectoral girdle skeleton [Term] id: UBERON:0004755 name: skeletal tissue def: "A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]" [] is_a: UBERON:0002384 ! connective tissue -relationship: BFO:0000050 UBERON:0004765 ! skeletal element +relationship: BFO:0000050 UBERON:0004765 ! part of skeletal element [Term] id: UBERON:0004756 @@ -19375,10 +19379,10 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004765 ! skeletal element -intersection_of: BFO:0000051 UBERON:0004755 ! skeletal tissue -intersection_of: RO:0002202 UBERON:0002067 ! dermis -relationship: BFO:0000051 UBERON:0004755 ! skeletal tissue -relationship: RO:0002202 UBERON:0002067 ! dermis +intersection_of: BFO:0000051 UBERON:0004755 ! has part skeletal tissue +intersection_of: RO:0002202 UBERON:0002067 ! develops_from dermis +relationship: BFO:0000051 UBERON:0004755 ! has part skeletal tissue +relationship: RO:0002202 UBERON:0002067 ! develops_from dermis [Term] id: UBERON:0004760 @@ -19392,8 +19396,8 @@ synonym: "rectal gland" RELATED [] is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000159 ! anal canal -relationship: BFO:0000050 UBERON:0000159 ! anal canal +intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal +relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0004761 @@ -19406,15 +19410,15 @@ synonym: "chondocranium" RELATED [] synonym: "embryonic chondocranium" RELATED [] synonym: "neurocranium" RELATED [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000051 UBERON:0002418 ! cartilage tissue -relationship: RO:0002202 UBERON:0009617 ! head paraxial mesoderm +relationship: BFO:0000051 UBERON:0002418 ! has part cartilage tissue +relationship: RO:0002202 UBERON:0009617 ! develops_from head paraxial mesoderm [Term] id: UBERON:0004765 name: skeletal element def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [] is_a: UBERON:0000062 ! organ -relationship: BFO:0000050 UBERON:0001434 ! skeletal system +relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system [Term] id: UBERON:0004766 @@ -19423,8 +19427,8 @@ def: "A bone that is part of a cranium." [] synonym: "cranium bone" EXACT [] is_a: UBERON:0003457 ! head bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0003128 ! cranium -relationship: BFO:0000050 UBERON:0003128 ! cranium +intersection_of: BFO:0000050 UBERON:0003128 ! part of cranium +relationship: BFO:0000050 UBERON:0003128 ! part of cranium [Term] id: UBERON:0004768 @@ -19433,9 +19437,9 @@ def: "Any bone that is part of the lower jaw skeleton. This includes (when prese synonym: "lower jaw bone" EXACT [] is_a: UBERON:0012360 ! bone of jaw intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001710 ! lower jaw region -relationship: BFO:0000050 UBERON:0003278 ! skeleton of lower jaw -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region +relationship: BFO:0000050 UBERON:0003278 ! part of skeleton of lower jaw +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0004769 @@ -19455,8 +19459,8 @@ synonym: "set of all joints" RELATED [] synonym: "set of all joints of body" EXACT [] synonym: "set of joints of body" RELATED [] is_a: UBERON:0034925 ! anatomical collection -relationship: BFO:0000050 UBERON:0001434 ! skeletal system -relationship: BFO:0000051 UBERON:0000982 ! skeletal joint +relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system +relationship: BFO:0000051 UBERON:0000982 ! has part skeletal joint [Term] id: UBERON:0004775 @@ -19475,8 +19479,8 @@ is_a: UBERON:0004726 ! vasa recta is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel intersection_of: UBERON:0004726 ! vasa recta -intersection_of: BFO:0000050 UBERON:0001293 ! outer medulla of kidney -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney +intersection_of: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney [Term] id: UBERON:0004776 @@ -19495,8 +19499,8 @@ is_a: UBERON:0004726 ! vasa recta is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel intersection_of: UBERON:0004726 ! vasa recta -intersection_of: BFO:0000050 UBERON:0001294 ! inner medulla of kidney -relationship: BFO:0000050 UBERON:0001294 ! inner medulla of kidney +intersection_of: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney +relationship: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney [Term] id: UBERON:0004777 @@ -19507,8 +19511,8 @@ synonym: "submucosa of apparatus respiratorius" EXACT [] synonym: "submucosa of respiratory system" EXACT [] is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003570 ! respiratory system connective tissue +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003570 ! part of respiratory system connective tissue [Term] id: UBERON:0004779 @@ -19523,9 +19527,9 @@ synonym: "lamina propria of respiratory system" EXACT [] synonym: "respiratory system lamina propria mucosa" EXACT [] is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003570 ! respiratory system connective tissue -relationship: BFO:0000050 UBERON:0004785 ! respiratory system mucosa +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003570 ! part of respiratory system connective tissue +relationship: BFO:0000050 UBERON:0004785 ! part of respiratory system mucosa [Term] id: UBERON:0004780 @@ -19533,8 +19537,8 @@ name: gastrointestinal system lamina propria def: "A lamina propria that is part of a gastrointestinal system." [] is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: BFO:0000050 UBERON:0004786 ! gastrointestinal system mucosa +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0004786 ! part of gastrointestinal system mucosa [Term] id: UBERON:0004781 @@ -19551,8 +19555,8 @@ synonym: "lamina propria of gallbladder" EXACT [] is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0002110 ! gall bladder -relationship: BFO:0000050 UBERON:0005033 ! mucosa of gallbladder +intersection_of: BFO:0000050 UBERON:0002110 ! part of gall bladder +relationship: BFO:0000050 UBERON:0005033 ! part of mucosa of gallbladder [Term] id: UBERON:0004782 @@ -19567,8 +19571,8 @@ synonym: "serous membrane of digestive system" EXACT [] synonym: "serous membrane of gastrointestinal system" EXACT [] is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004783 @@ -19588,8 +19592,8 @@ synonym: "tunica serosa vesicae biliaris" EXACT [] is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0002110 ! gall bladder -relationship: BFO:0000050 UBERON:0002110 ! gall bladder +intersection_of: BFO:0000050 UBERON:0002110 ! part of gall bladder +relationship: BFO:0000050 UBERON:0002110 ! part of gall bladder [Term] id: UBERON:0004784 @@ -19615,8 +19619,8 @@ synonym: "wall of ventricle of heart" EXACT [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0002082 ! cardiac ventricle +intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle [Term] id: UBERON:0004785 @@ -19638,8 +19642,8 @@ synonym: "respiratory system mucous membrane" EXACT [] synonym: "respiratory tract mucosa" RELATED [] is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004786 @@ -19651,9 +19655,9 @@ synonym: "gut mucuous membrane" EXACT [] synonym: "mucosa of gut" EXACT [] is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004787 @@ -19665,7 +19669,7 @@ synonym: "urothelium of urethra" EXACT [] is_a: UBERON:0000365 ! urothelium is_a: UBERON:0002325 ! epithelium of urethra intersection_of: UBERON:0000365 ! urothelium -intersection_of: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0004788 @@ -19690,8 +19694,8 @@ synonym: "urothelium of renal pelvis" EXACT [] is_a: UBERON:0001254 ! urothelium of ureter is_a: UBERON:0004819 ! kidney epithelium intersection_of: UBERON:0000365 ! urothelium -intersection_of: BFO:0000050 UBERON:0001224 ! renal pelvis -relationship: BFO:0000050 UBERON:0001224 ! renal pelvis +intersection_of: BFO:0000050 UBERON:0001224 ! part of renal pelvis +relationship: BFO:0000050 UBERON:0001224 ! part of renal pelvis [Term] id: UBERON:0004790 @@ -19705,7 +19709,7 @@ is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0019319 ! exocrine gland of integumental system intersection_of: UBERON:0000414 ! mucous gland -intersection_of: BFO:0000050 UBERON:0002097 ! skin of body +intersection_of: BFO:0000050 UBERON:0002097 ! part of skin of body [Term] id: UBERON:0004792 @@ -19717,8 +19721,8 @@ synonym: "pars endocrina pancreatis secretion" EXACT [] synonym: "secretion of pars endocrina pancreatis" EXACT [] is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland -intersection_of: BFO:0000050 UBERON:0000016 ! endocrine pancreas -relationship: BFO:0000050 UBERON:0000016 ! endocrine pancreas +intersection_of: BFO:0000050 UBERON:0000016 ! part of endocrine pancreas +relationship: BFO:0000050 UBERON:0000016 ! part of endocrine pancreas [Term] id: UBERON:0004793 @@ -19730,8 +19734,8 @@ synonym: "pars exocrina pancreatis secretion" EXACT [] synonym: "secretion of pars exocrina pancreatis" EXACT [] is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland -intersection_of: BFO:0000050 UBERON:0000017 ! exocrine pancreas -relationship: BFO:0000050 UBERON:0000017 ! exocrine pancreas +intersection_of: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas +relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas [Term] id: UBERON:0004794 @@ -19745,8 +19749,8 @@ synonym: "secretion of gullet" EXACT [] synonym: "secretion of oesophagus" EXACT [] is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0004795 @@ -19756,8 +19760,8 @@ synonym: "pancreatic secretion" EXACT [] synonym: "secretion of pancreas" EXACT [] is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland -intersection_of: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000050 UBERON:0001264 ! pancreas +intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0004797 @@ -19766,8 +19770,8 @@ def: "Any of the tissue layers that comprise a blood vessel. Examples: tunica me is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer -intersection_of: BFO:0000050 UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0035965 ! wall of blood vessel +intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel +relationship: BFO:0000050 UBERON:0035965 ! part of wall of blood vessel [Term] id: UBERON:0004801 @@ -19780,8 +19784,8 @@ synonym: "cervix epithelial tissue" EXACT [] synonym: "epithelium of cervix" EXACT [] is_a: UBERON:0006955 ! uterine epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000002 ! uterine cervix -relationship: BFO:0000050 UBERON:0000002 ! uterine cervix +intersection_of: BFO:0000050 UBERON:0000002 ! part of uterine cervix +relationship: BFO:0000050 UBERON:0000002 ! part of uterine cervix [Term] id: UBERON:0004802 @@ -19796,8 +19800,8 @@ is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000065 ! respiratory tract -relationship: BFO:0000050 UBERON:0000072 ! proximo-distal subdivision of respiratory tract +intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract +relationship: BFO:0000050 UBERON:0000072 ! part of proximo-distal subdivision of respiratory tract [Term] id: UBERON:0004803 @@ -19809,8 +19813,8 @@ synonym: "penis epithelial tissue" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000989 ! penis -relationship: BFO:0000050 UBERON:0000989 ! penis +intersection_of: BFO:0000050 UBERON:0000989 ! part of penis +relationship: BFO:0000050 UBERON:0000989 ! part of penis [Term] id: UBERON:0004804 @@ -19827,8 +19831,8 @@ synonym: "oviduct epithelial tissue" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000993 ! oviduct -relationship: BFO:0000050 UBERON:0003889 ! fallopian tube +intersection_of: BFO:0000050 UBERON:0000993 ! part of oviduct +relationship: BFO:0000050 UBERON:0003889 ! part of fallopian tube [Term] id: UBERON:0004805 @@ -19845,8 +19849,8 @@ is_a: UBERON:0004910 ! epithelium of male gonad is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000998 ! seminal vesicle -relationship: BFO:0000050 UBERON:0000998 ! seminal vesicle +intersection_of: BFO:0000050 UBERON:0000998 ! part of seminal vesicle +relationship: BFO:0000050 UBERON:0000998 ! part of seminal vesicle [Term] id: UBERON:0004807 @@ -19861,8 +19865,8 @@ synonym: "epithelium of respiratory system" EXACT [] synonym: "respiratory system epithelial tissue" EXACT [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004808 @@ -19877,8 +19881,8 @@ synonym: "epithelium of gastrointestinal system" EXACT [] synonym: "gastrointestinal system epithelial tissue" EXACT [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004809 @@ -19889,8 +19893,8 @@ synonym: "epithelium of salivary gland" EXACT [] synonym: "salivary gland epithelial tissue" EXACT [] is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001044 ! saliva-secreting gland -relationship: BFO:0000050 UBERON:0001044 ! saliva-secreting gland +intersection_of: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland +relationship: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland [Term] id: UBERON:0004810 @@ -19898,7 +19902,7 @@ name: nephron tubule epithelium def: "the cellular avascular layer of the renal tubule luminar surfaces" [] synonym: "kidney tubule epithelium" EXACT [] is_a: UBERON:0004211 ! nephron epithelium -relationship: BFO:0000050 UBERON:0001231 ! nephron tubule +relationship: BFO:0000050 UBERON:0001231 ! part of nephron tubule [Term] id: UBERON:0004811 @@ -19912,8 +19916,8 @@ synonym: "uterine epithelium" RELATED [] is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0006955 ! uterine epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001295 ! endometrium -relationship: BFO:0000050 UBERON:0001295 ! endometrium +intersection_of: BFO:0000050 UBERON:0001295 ! part of endometrium +relationship: BFO:0000050 UBERON:0001295 ! part of endometrium [Term] id: UBERON:0004812 @@ -19937,8 +19941,8 @@ synonym: "prepuce of penis epithelial tissue" EXACT [] synonym: "prepuce of penis epithelium" BROAD [] is_a: UBERON:0004803 ! penis epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001332 ! prepuce of penis -relationship: BFO:0000050 UBERON:0001332 ! prepuce of penis +intersection_of: BFO:0000050 UBERON:0001332 ! part of prepuce of penis +relationship: BFO:0000050 UBERON:0001332 ! part of prepuce of penis [Term] id: UBERON:0004813 @@ -19958,8 +19962,8 @@ is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0004910 ! epithelium of male gonad is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001343 ! seminiferous tubule of testis -relationship: BFO:0000050 UBERON:0001343 ! seminiferous tubule of testis +intersection_of: BFO:0000050 UBERON:0001343 ! part of seminiferous tubule of testis +relationship: BFO:0000050 UBERON:0001343 ! part of seminiferous tubule of testis [Term] id: UBERON:0004814 @@ -19970,8 +19974,8 @@ synonym: "epithelium of upper respiratory tract" EXACT [] synonym: "upper respiratory tract epithelial tissue" EXACT [] is_a: UBERON:0004802 ! respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001557 ! upper respiratory tract -relationship: BFO:0000050 UBERON:0001557 ! upper respiratory tract +intersection_of: BFO:0000050 UBERON:0001557 ! part of upper respiratory tract +relationship: BFO:0000050 UBERON:0001557 ! part of upper respiratory tract [Term] id: UBERON:0004815 @@ -19982,8 +19986,8 @@ synonym: "epithelium of lower respiratory tract" EXACT [] synonym: "lower respiratory tract epithelial tissue" EXACT [] is_a: UBERON:0004802 ! respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract +intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0004817 @@ -19995,8 +19999,8 @@ synonym: "lacrimal gland epithelial tissue" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001817 ! lacrimal gland -relationship: BFO:0000050 UBERON:0001817 ! lacrimal gland +intersection_of: BFO:0000050 UBERON:0001817 ! part of lacrimal gland +relationship: BFO:0000050 UBERON:0001817 ! part of lacrimal gland [Term] id: UBERON:0004819 @@ -20008,8 +20012,8 @@ synonym: "kidney epithelial tissue" EXACT [] synonym: "renal epithelium" RELATED [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0004820 @@ -20022,8 +20026,8 @@ is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0034932 ! epithelium of biliary system is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002394 ! bile duct -relationship: BFO:0000050 UBERON:0002394 ! bile duct +intersection_of: BFO:0000050 UBERON:0002394 ! part of bile duct +relationship: BFO:0000050 UBERON:0002394 ! part of bile duct [Term] id: UBERON:0004821 @@ -20040,8 +20044,8 @@ synonym: "pulmonary alveolus epithelium" EXACT [] is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0000487 ! simple squamous epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002299 ! alveolus of lung -relationship: BFO:0000050 UBERON:0004894 ! alveolar wall +intersection_of: BFO:0000050 UBERON:0002299 ! part of alveolus of lung +relationship: BFO:0000050 UBERON:0004894 ! part of alveolar wall [Term] id: UBERON:0004822 @@ -20052,8 +20056,8 @@ synonym: "epithelium of extrahepatic bile duct" EXACT [] synonym: "extrahepatic bile duct epithelial tissue" EXACT [] is_a: UBERON:0004820 ! bile duct epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0003703 ! extrahepatic bile duct -relationship: BFO:0000050 UBERON:0003703 ! extrahepatic bile duct +intersection_of: BFO:0000050 UBERON:0003703 ! part of extrahepatic bile duct +relationship: BFO:0000050 UBERON:0003703 ! part of extrahepatic bile duct [Term] id: UBERON:0004823 @@ -20064,8 +20068,8 @@ synonym: "epithelium of intrahepatic bile duct" EXACT [] synonym: "intrahepatic bile duct epithelial tissue" EXACT [] is_a: UBERON:0004820 ! bile duct epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0003704 ! intrahepatic bile duct -relationship: BFO:0000050 UBERON:0003704 ! intrahepatic bile duct +intersection_of: BFO:0000050 UBERON:0003704 ! part of intrahepatic bile duct +relationship: BFO:0000050 UBERON:0003704 ! part of intrahepatic bile duct [Term] id: UBERON:0004827 @@ -20081,8 +20085,8 @@ synonym: "thyroid medulla" EXACT [] is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: BFO:0000050 UBERON:0002046 ! thyroid gland +intersection_of: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: BFO:0000050 UBERON:0002046 ! part of thyroid gland [Term] id: UBERON:0004829 @@ -20095,8 +20099,8 @@ synonym: "urethra skeletal muscle tissue" EXACT [] synonym: "urethral skeletal muscle" RELATED [] is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0003829 ! urethra muscle tissue +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0003829 ! part of urethra muscle tissue [Term] id: UBERON:0004830 @@ -20109,8 +20113,8 @@ synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [] synonym: "skeletal muscle tissue of respiratory system" EXACT [] is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004831 @@ -20120,8 +20124,8 @@ synonym: "esophagus skeletal muscle tissue" EXACT [] synonym: "skeletal muscle of esophagus" EXACT [] is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0003832 ! esophagus muscle +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0003832 ! part of esophagus muscle [Term] id: UBERON:0004832 @@ -20140,8 +20144,8 @@ synonym: "skeletal muscle tissue of anal region" EXACT [] synonym: "skeletal muscle tissue of anal triangle" EXACT [] is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue -intersection_of: BFO:0000050 UBERON:0001353 ! anal region -relationship: BFO:0000050 UBERON:0001353 ! anal region +intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0004834 @@ -20150,8 +20154,8 @@ def: "Smooth muscle tissue in all or part of a hepatic duct." [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0005171 ! hepatic duct -relationship: BFO:0000050 UBERON:0005171 ! hepatic duct +intersection_of: BFO:0000050 UBERON:0005171 ! part of hepatic duct +relationship: BFO:0000050 UBERON:0005171 ! part of hepatic duct [Term] id: UBERON:0004835 @@ -20167,8 +20171,8 @@ synonym: "smooth muscle tissue of epididymis" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001301 ! epididymis -relationship: BFO:0000050 UBERON:0001301 ! epididymis +intersection_of: BFO:0000050 UBERON:0001301 ! part of epididymis +relationship: BFO:0000050 UBERON:0001301 ! part of epididymis [Term] id: UBERON:0004848 @@ -20188,9 +20192,9 @@ synonym: "respiratory system endothelium of artery" EXACT [] is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0001917 ! endothelium of artery -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003469 ! respiratory system artery -relationship: BFO:0000050 UBERON:0003504 ! respiratory system blood vessel +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003469 ! part of respiratory system artery +relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel [Term] id: UBERON:0004849 @@ -20210,9 +20214,9 @@ synonym: "venous endothelium of respiratory system" EXACT [] is_a: UBERON:0001919 ! endothelium of vein is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0001919 ! endothelium of vein -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003476 ! respiratory system venous blood vessel -relationship: BFO:0000050 UBERON:0003504 ! respiratory system blood vessel +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003476 ! part of respiratory system venous blood vessel +relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel [Term] id: UBERON:0004850 @@ -20221,8 +20225,8 @@ def: "An endothelium that is part of a lymph node [Automatically generated defin synonym: "endothelium of lymph node" EXACT [] is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000050 UBERON:0000029 ! lymph node +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000050 UBERON:0000029 ! part of lymph node [Term] id: UBERON:0004851 @@ -20239,8 +20243,8 @@ synonym: "trunk of systemic arterial tree endothelium" EXACT [] is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0000947 ! aorta +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0004852 @@ -20250,8 +20254,8 @@ synonym: "endothelia" RELATED [] synonym: "vascular endothelia" RELATED [] is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0004535 ! cardiovascular system -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system +intersection_of: BFO:0000050 UBERON:0004535 ! part of cardiovascular system +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0004854 @@ -20263,7 +20267,7 @@ synonym: "mesentery of gastrointestinal system" EXACT [] is_a: UBERON:0002095 ! mesentery is_a: UBERON:0004782 ! gastrointestinal system serosa intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004859 @@ -20273,8 +20277,8 @@ synonym: "eye-associated gland" EXACT [] synonym: "gland of eye" EXACT [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000970 ! eye -relationship: BFO:0000050 UBERON:0000970 ! eye +intersection_of: BFO:0000050 UBERON:0000970 ! part of eye +relationship: BFO:0000050 UBERON:0000970 ! part of eye [Term] id: UBERON:0004861 @@ -20283,8 +20287,8 @@ def: "An alveolus that is part of a right lung [Automatically generated definiti synonym: "alveolus of right lung" EXACT [] is_a: UBERON:0002299 ! alveolus of lung intersection_of: UBERON:0003215 ! alveolus -intersection_of: BFO:0000050 UBERON:0002167 ! right lung -relationship: BFO:0000050 UBERON:0006526 ! right lung alveolar system +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung +relationship: BFO:0000050 UBERON:0006526 ! part of right lung alveolar system [Term] id: UBERON:0004862 @@ -20294,8 +20298,8 @@ synonym: "alveolus of left lung" EXACT [] synonym: "alveolus of lobe of left lung" EXACT [] is_a: UBERON:0002299 ! alveolus of lung intersection_of: UBERON:0003215 ! alveolus -intersection_of: BFO:0000050 UBERON:0002168 ! left lung -relationship: BFO:0000050 UBERON:0006525 ! left lung alveolar system +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung +relationship: BFO:0000050 UBERON:0006525 ! part of left lung alveolar system [Term] id: UBERON:0004864 @@ -20311,8 +20315,8 @@ synonym: "set of retinal blood vessels" EXACT [] synonym: "vasa sanguinea retinae" EXACT [] is_a: UBERON:0002203 ! vasculature of eye intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000966 ! retina -relationship: BFO:0000050 UBERON:0000966 ! retina +intersection_of: BFO:0000050 UBERON:0000966 ! part of retina +relationship: BFO:0000050 UBERON:0000966 ! part of retina [Term] id: UBERON:0004871 @@ -20322,7 +20326,7 @@ synonym: "outer layer of lateral plate mesoderm" EXACT [] synonym: "parietal mesoderm" RELATED [] synonym: "somatic mesoderm" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0004872 @@ -20332,7 +20336,7 @@ synonym: "inner layer of lateral plate mesoderm" EXACT [] synonym: "splanchnic mesoderm" RELATED [] synonym: "visceral mesoderm" BROAD [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0004873 @@ -20340,14 +20344,14 @@ name: splanchnopleure def: "A structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]." [] synonym: "ventral splanchnic mesoderm" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0004874 name: somatopleure def: "A structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0004875 @@ -20355,7 +20359,7 @@ name: nephrogenic cord def: "A portion of the urogenital ridge which is the source of much of the urinary system[WP]." [] synonym: "chorda nephrogenica" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: RO:0002202 UBERON:0004876 ! urogenital fold +relationship: RO:0002202 UBERON:0004876 ! develops_from urogenital fold [Term] id: UBERON:0004876 @@ -20365,9 +20369,9 @@ synonym: "urethral fold" EXACT [] synonym: "urogenital fold" EXACT [] synonym: "urogenital ridge" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0009196 ! indifferent external genitalia -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm -relationship: RO:0002202 UBERON:0012292 ! embryonic cloacal fold +relationship: BFO:0000050 UBERON:0009196 ! part of indifferent external genitalia +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm +relationship: RO:0002202 UBERON:0012292 ! develops_from embryonic cloacal fold [Term] id: UBERON:0004877 @@ -20385,7 +20389,7 @@ synonym: "chorda mesoderm" EXACT [] synonym: "dorsal mesoderm" EXACT [] synonym: "presumptive notochord" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003068 ! axial mesoderm +relationship: BFO:0000050 UBERON:0003068 ! part of axial mesoderm [Term] id: UBERON:0004883 @@ -20397,9 +20401,9 @@ synonym: "pulmonary mesenchyme" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm [Term] id: UBERON:0004894 @@ -20412,8 +20416,8 @@ synonym: "wall of pulmonary alveolus" EXACT [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0002299 ! alveolus of lung -relationship: BFO:0000050 UBERON:0002299 ! alveolus of lung +intersection_of: BFO:0000050 UBERON:0002299 ! part of alveolus of lung +relationship: BFO:0000050 UBERON:0002299 ! part of alveolus of lung [Term] id: UBERON:0004895 @@ -20421,8 +20425,8 @@ name: alveolar smooth muscle def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [] is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002299 ! alveolus of lung -relationship: BFO:0000050 UBERON:0002299 ! alveolus of lung +intersection_of: BFO:0000050 UBERON:0002299 ! part of alveolus of lung +relationship: BFO:0000050 UBERON:0002299 ! part of alveolus of lung [Term] id: UBERON:0004902 @@ -20433,9 +20437,9 @@ synonym: "UGE" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0009846 ! embryonic cloacal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000164 ! primitive urogenital sinus -relationship: BFO:0000050 UBERON:0000164 ! primitive urogenital sinus -relationship: RO:0002202 UBERON:0009846 ! embryonic cloacal epithelium +intersection_of: BFO:0000050 UBERON:0000164 ! part of primitive urogenital sinus +relationship: BFO:0000050 UBERON:0000164 ! part of primitive urogenital sinus +relationship: RO:0002202 UBERON:0009846 ! develops_from embryonic cloacal epithelium [Term] id: UBERON:0004905 @@ -20443,7 +20447,7 @@ name: articulation def: "Anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." [] synonym: "joint" NARROW [] is_a: UBERON:0034921 ! multi organ part structure -relationship: BFO:0000050 UBERON:0004770 ! articular system +relationship: BFO:0000050 UBERON:0004770 ! part of articular system [Term] id: UBERON:0004906 @@ -20454,8 +20458,8 @@ synonym: "gut ectoderm" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0004907 @@ -20465,8 +20469,8 @@ synonym: "gut" BROAD [] synonym: "lower gastrointestinal tract" EXACT [] synonym: "lower GI tract" EXACT [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: RO:0002202 UBERON:0001046 ! hindgut +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: RO:0002202 UBERON:0001046 ! develops_from hindgut [Term] id: UBERON:0004908 @@ -20475,7 +20479,7 @@ def: "The region of the digestive tract extending from the mouth cavity through synonym: "upper gastrointestinal tract" EXACT [] synonym: "upper GI tract" EXACT [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: RO:0002202 UBERON:0001041 ! foregut +relationship: RO:0002202 UBERON:0001041 ! develops_from foregut [Term] id: UBERON:0004909 @@ -20487,8 +20491,8 @@ synonym: "gonadal sheath" RELATED [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000991 ! gonad -relationship: BFO:0000050 UBERON:0000991 ! gonad +intersection_of: BFO:0000050 UBERON:0000991 ! part of gonad +relationship: BFO:0000050 UBERON:0000991 ! part of gonad [Term] id: UBERON:0004910 @@ -20498,8 +20502,8 @@ synonym: "testis epithelium" EXACT [] synonym: "testis sheath" NARROW [] is_a: UBERON:0004909 ! epithelium of gonad intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000473 ! testis -relationship: BFO:0000050 UBERON:0000473 ! testis +intersection_of: BFO:0000050 UBERON:0000473 ! part of testis +relationship: BFO:0000050 UBERON:0000473 ! part of testis [Term] id: UBERON:0004911 @@ -20510,8 +20514,8 @@ synonym: "ovarian sheath" NARROW [] synonym: "ovary epithelium" EXACT [] is_a: UBERON:0004909 ! epithelium of gonad intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000050 UBERON:0000992 ! ovary +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000050 UBERON:0000992 ! part of ovary [Term] id: UBERON:0004912 @@ -20521,9 +20525,9 @@ is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum -relationship: BFO:0000050 UBERON:0002423 ! hepatobiliary system -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: RO:0002202 UBERON:0004161 ! septum transversum +relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: RO:0002202 UBERON:0004161 ! develops_from septum transversum [Term] id: UBERON:0004916 @@ -20533,8 +20537,8 @@ synonym: "anal region sphincter" EXACT [] synonym: "sphincter analia" EXACT [] is_a: UBERON:0004590 ! sphincter muscle intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0001353 ! anal region -relationship: BFO:0000050 UBERON:0001353 ! anal region +intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0004917 @@ -20547,7 +20551,7 @@ synonym: "urethral sphincter muscle" EXACT [] is_a: UBERON:0003829 ! urethra muscle tissue is_a: UBERON:0004590 ! sphincter muscle intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0004921 @@ -20558,14 +20562,14 @@ synonym: "intestinal tract" RELATED [] synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [] is_a: UBERON:0013522 ! subdivision of tube -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0004923 name: organ component layer def: "A part of a wall of an organ that forms a layer." [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0000060 ! anatomical wall +relationship: BFO:0000050 UBERON:0000060 ! part of anatomical wall [Term] id: UBERON:0004924 @@ -20581,8 +20585,8 @@ synonym: "tela submucosa pharyngis" EXACT [] is_a: UBERON:0004777 ! respiratory system submucosa is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0004926 @@ -20592,8 +20596,8 @@ synonym: "cystic duct submucosa" EXACT [] synonym: "cystic ductal submucosa" EXACT [] is_a: UBERON:0004938 ! submucosa of biliary tree intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001152 ! cystic duct -relationship: BFO:0000050 UBERON:0001152 ! cystic duct +intersection_of: BFO:0000050 UBERON:0001152 ! part of cystic duct +relationship: BFO:0000050 UBERON:0001152 ! part of cystic duct [Term] id: UBERON:0004927 @@ -20606,8 +20610,8 @@ synonym: "submucosa of caecum" EXACT [] synonym: "submucosa of intestinum crassum caecum" EXACT [] is_a: UBERON:0003331 ! submucosa of colon intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0001153 ! caecum +intersection_of: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0001153 ! part of caecum [Term] id: UBERON:0004928 @@ -20623,8 +20627,8 @@ synonym: "vermiform appendix submucosa" EXACT [] synonym: "vermix submucosa" EXACT [] is_a: UBERON:0004927 ! submucosa of cecum intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001154 ! vermiform appendix -relationship: BFO:0000050 UBERON:0001154 ! vermiform appendix +intersection_of: BFO:0000050 UBERON:0001154 ! part of vermiform appendix +relationship: BFO:0000050 UBERON:0001154 ! part of vermiform appendix [Term] id: UBERON:0004929 @@ -20633,8 +20637,8 @@ def: "A submucosa that is part of an ascending colon [Automatically generated de synonym: "ascending colon submucosa" EXACT [] is_a: UBERON:0003331 ! submucosa of colon intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001156 ! ascending colon -relationship: BFO:0000050 UBERON:0001156 ! ascending colon +intersection_of: BFO:0000050 UBERON:0001156 ! part of ascending colon +relationship: BFO:0000050 UBERON:0001156 ! part of ascending colon [Term] id: UBERON:0004930 @@ -20643,8 +20647,8 @@ def: "A submucosa that is part of a transverse colon [Automatically generated de synonym: "transverse colon submucosa" EXACT [] is_a: UBERON:0003331 ! submucosa of colon intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001157 ! transverse colon -relationship: BFO:0000050 UBERON:0001157 ! transverse colon +intersection_of: BFO:0000050 UBERON:0001157 ! part of transverse colon +relationship: BFO:0000050 UBERON:0001157 ! part of transverse colon [Term] id: UBERON:0004931 @@ -20653,8 +20657,8 @@ def: "A submucosa that is part of a descending colon [Automatically generated de synonym: "descending colon submucosa" EXACT [] is_a: UBERON:0003331 ! submucosa of colon intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001158 ! descending colon -relationship: BFO:0000050 UBERON:0001158 ! descending colon +intersection_of: BFO:0000050 UBERON:0001158 ! part of descending colon +relationship: BFO:0000050 UBERON:0001158 ! part of descending colon [Term] id: UBERON:0004932 @@ -20663,8 +20667,8 @@ def: "A submucosa that is part of a sigmoid colon [Automatically generated defin synonym: "sigmoid colon submucosa" EXACT [] is_a: UBERON:0003331 ! submucosa of colon intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001159 ! sigmoid colon -relationship: BFO:0000050 UBERON:0001159 ! sigmoid colon +intersection_of: BFO:0000050 UBERON:0001159 ! part of sigmoid colon +relationship: BFO:0000050 UBERON:0001159 ! part of sigmoid colon [Term] id: UBERON:0004933 @@ -20677,8 +20681,8 @@ synonym: "submucosa of fundus gastricus (ventricularis)" EXACT [] synonym: "submucosa of stomach fundus" EXACT [] is_a: UBERON:0001200 ! submucosa of stomach intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001160 ! fundus of stomach -relationship: BFO:0000050 UBERON:0001160 ! fundus of stomach +intersection_of: BFO:0000050 UBERON:0001160 ! part of fundus of stomach +relationship: BFO:0000050 UBERON:0001160 ! part of fundus of stomach [Term] id: UBERON:0004935 @@ -20695,8 +20699,8 @@ synonym: "submucosa of pars cardiaca (gaster)" EXACT [] synonym: "submucosa of stomach cardiac region" EXACT [] is_a: UBERON:0001200 ! submucosa of stomach intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001162 ! cardia of stomach -relationship: BFO:0000050 UBERON:0001162 ! cardia of stomach +intersection_of: BFO:0000050 UBERON:0001162 ! part of cardia of stomach +relationship: BFO:0000050 UBERON:0001162 ! part of cardia of stomach [Term] id: UBERON:0004936 @@ -20709,8 +20713,8 @@ synonym: "submucosa of antrum of stomach" EXACT [] synonym: "submucosa of stomach pyloric antrum" EXACT [] is_a: UBERON:0004937 ! submucosa of pylorus intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001165 ! pyloric antrum -relationship: BFO:0000050 UBERON:0001165 ! pyloric antrum +intersection_of: BFO:0000050 UBERON:0001165 ! part of pyloric antrum +relationship: BFO:0000050 UBERON:0001165 ! part of pyloric antrum [Term] id: UBERON:0004937 @@ -20724,8 +20728,8 @@ synonym: "submucosa of pyloric part of stomach" EXACT [] synonym: "submucosa of stomach pyloric region" EXACT [] is_a: UBERON:0001200 ! submucosa of stomach intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001166 ! pylorus -relationship: BFO:0000050 UBERON:0001166 ! pylorus +intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus +relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0004938 @@ -20737,8 +20741,8 @@ synonym: "submucosa of biliary tract" EXACT [] is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001173 ! biliary tree -relationship: BFO:0000050 UBERON:0001173 ! biliary tree +intersection_of: BFO:0000050 UBERON:0001173 ! part of biliary tree +relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree [Term] id: UBERON:0004943 @@ -20754,8 +20758,8 @@ synonym: "urinary bladder submucosa" EXACT [] is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001256 ! wall of urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder [Term] id: UBERON:0004944 @@ -20774,8 +20778,8 @@ synonym: "urinary bladder trigone submucosa" EXACT [] synonym: "vesical trigone submucosa" EXACT [] is_a: UBERON:0004943 ! submucosa of urinary bladder intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001257 ! trigone of urinary bladder -relationship: BFO:0000050 UBERON:0001257 ! trigone of urinary bladder +intersection_of: BFO:0000050 UBERON:0001257 ! part of trigone of urinary bladder +relationship: BFO:0000050 UBERON:0001257 ! part of trigone of urinary bladder [Term] id: UBERON:0004945 @@ -20792,8 +20796,8 @@ synonym: "urinary bladder neck submucosa" EXACT [] synonym: "vesical neck submucosa" EXACT [] is_a: UBERON:0004943 ! submucosa of urinary bladder intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001258 ! neck of urinary bladder -relationship: BFO:0000050 UBERON:0001258 ! neck of urinary bladder +intersection_of: BFO:0000050 UBERON:0001258 ! part of neck of urinary bladder +relationship: BFO:0000050 UBERON:0001258 ! part of neck of urinary bladder [Term] id: UBERON:0004946 @@ -20803,8 +20807,8 @@ synonym: "ileal submucosa" EXACT [] synonym: "ileum submucosa" EXACT [] is_a: UBERON:0001205 ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0002116 ! ileum +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0002116 ! part of ileum [Term] id: UBERON:0004952 @@ -20815,8 +20819,8 @@ synonym: "lobular bronchiole submucosa" EXACT [] synonym: "submucosa of lobular bronchiole" EXACT [] is_a: UBERON:0001957 ! submucosa of bronchus intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0002186 ! bronchiole -relationship: BFO:0000050 UBERON:0002186 ! bronchiole +intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole +relationship: BFO:0000050 UBERON:0002186 ! part of bronchiole [Term] id: UBERON:0004980 @@ -20837,8 +20841,8 @@ synonym: "ureteric mucosa" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0009916 ! wall of ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0004983 @@ -20856,8 +20860,8 @@ synonym: "vaginal mucosa" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0004984 @@ -20882,8 +20886,8 @@ synonym: "tunica mucosa glandulae vesiculosae" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000998 ! seminal vesicle -relationship: BFO:0000050 UBERON:0000998 ! seminal vesicle +intersection_of: BFO:0000050 UBERON:0000998 ! part of seminal vesicle +relationship: BFO:0000050 UBERON:0000998 ! part of seminal vesicle [Term] id: UBERON:0004988 @@ -20899,8 +20903,8 @@ synonym: "mucous membrane of cystic duct" EXACT [] synonym: "organ mucosa of cystic duct" EXACT [] is_a: UBERON:0004999 ! mucosa of biliary tree intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001152 ! cystic duct -relationship: BFO:0000050 UBERON:0001152 ! cystic duct +intersection_of: BFO:0000050 UBERON:0001152 ! part of cystic duct +relationship: BFO:0000050 UBERON:0001152 ! part of cystic duct [Term] id: UBERON:0004989 @@ -20940,8 +20944,8 @@ synonym: "vermix mucous membrane" EXACT [] synonym: "vermix organ mucosa" EXACT [] is_a: UBERON:0000314 ! cecum mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001154 ! vermiform appendix -relationship: BFO:0000050 UBERON:0001154 ! vermiform appendix +intersection_of: BFO:0000050 UBERON:0001154 ! part of vermiform appendix +relationship: BFO:0000050 UBERON:0001154 ! part of vermiform appendix [Term] id: UBERON:0004990 @@ -20956,8 +20960,8 @@ synonym: "mucous membrane of ascending colon" EXACT [] synonym: "organ mucosa of ascending colon" EXACT [] is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001156 ! ascending colon -relationship: BFO:0000050 UBERON:0001156 ! ascending colon +intersection_of: BFO:0000050 UBERON:0001156 ! part of ascending colon +relationship: BFO:0000050 UBERON:0001156 ! part of ascending colon [Term] id: UBERON:0004991 @@ -20972,8 +20976,8 @@ synonym: "transverse colon mucous membrane" EXACT [] synonym: "transverse colon organ mucosa" EXACT [] is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001157 ! transverse colon -relationship: BFO:0000050 UBERON:0001157 ! transverse colon +intersection_of: BFO:0000050 UBERON:0001157 ! part of transverse colon +relationship: BFO:0000050 UBERON:0001157 ! part of transverse colon [Term] id: UBERON:0004992 @@ -20988,8 +20992,8 @@ synonym: "mucous membrane of descending colon" EXACT [] synonym: "organ mucosa of descending colon" EXACT [] is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001158 ! descending colon -relationship: BFO:0000050 UBERON:0001158 ! descending colon +intersection_of: BFO:0000050 UBERON:0001158 ! part of descending colon +relationship: BFO:0000050 UBERON:0001158 ! part of descending colon [Term] id: UBERON:0004993 @@ -21004,8 +21008,8 @@ synonym: "sigmoid colon mucous membrane" EXACT [] synonym: "sigmoid colon organ mucosa" EXACT [] is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001159 ! sigmoid colon -relationship: BFO:0000050 UBERON:0001159 ! sigmoid colon +intersection_of: BFO:0000050 UBERON:0001159 ! part of sigmoid colon +relationship: BFO:0000050 UBERON:0001159 ! part of sigmoid colon [Term] id: UBERON:0004994 @@ -21036,8 +21040,8 @@ synonym: "stomach fundus mucous membrane" EXACT [] synonym: "stomach fundus organ mucosa" EXACT [] is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001160 ! fundus of stomach -relationship: BFO:0000050 UBERON:0001160 ! fundus of stomach +intersection_of: BFO:0000050 UBERON:0001160 ! part of fundus of stomach +relationship: BFO:0000050 UBERON:0001160 ! part of fundus of stomach [Term] id: UBERON:0004996 @@ -21084,8 +21088,8 @@ synonym: "stomach cardiac region mucous membrane" EXACT [] synonym: "stomach cardiac region organ mucosa" EXACT [] is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001162 ! cardia of stomach -relationship: BFO:0000050 UBERON:0001162 ! cardia of stomach +intersection_of: BFO:0000050 UBERON:0001162 ! part of cardia of stomach +relationship: BFO:0000050 UBERON:0001162 ! part of cardia of stomach [Term] id: UBERON:0004997 @@ -21118,9 +21122,9 @@ synonym: "stomach pyloric antrum mucous membrane" EXACT [] synonym: "stomach pyloric antrum organ mucosa" EXACT [] is_a: UBERON:0004998 ! mucosa of pylorus intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001165 ! pyloric antrum -relationship: BFO:0000050 UBERON:0001165 ! pyloric antrum -relationship: BFO:0000050 UBERON:0004998 ! mucosa of pylorus +intersection_of: BFO:0000050 UBERON:0001165 ! part of pyloric antrum +relationship: BFO:0000050 UBERON:0001165 ! part of pyloric antrum +relationship: BFO:0000050 UBERON:0004998 ! part of mucosa of pylorus [Term] id: UBERON:0004998 @@ -21152,8 +21156,8 @@ synonym: "stomach pyloric region mucous membrane" EXACT [] synonym: "stomach pyloric region organ mucosa" EXACT [] is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001166 ! pylorus -relationship: BFO:0000050 UBERON:0001166 ! pylorus +intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus +relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0004999 @@ -21177,8 +21181,8 @@ synonym: "organ mucosa of biliary tree" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001173 ! biliary tree -relationship: BFO:0000050 UBERON:0001173 ! biliary tree +intersection_of: BFO:0000050 UBERON:0001173 ! part of biliary tree +relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree [Term] id: UBERON:0005006 @@ -21211,8 +21215,8 @@ synonym: "renal pelvis organ mucosa" EXACT [] synonym: "tunica mucosa pelvis renalis" EXACT [] is_a: UBERON:0004980 ! mucosa of ureter intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001224 ! renal pelvis -relationship: BFO:0000050 UBERON:0001224 ! renal pelvis +intersection_of: BFO:0000050 UBERON:0001224 ! part of renal pelvis +relationship: BFO:0000050 UBERON:0001224 ! part of renal pelvis [Term] id: UBERON:0005009 @@ -21267,8 +21271,8 @@ synonym: "vesical trigone mucous membrane" EXACT [] synonym: "vesical trigone organ mucosa" EXACT [] is_a: UBERON:0001259 ! mucosa of urinary bladder intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001257 ! trigone of urinary bladder -relationship: BFO:0000050 UBERON:0001257 ! trigone of urinary bladder +intersection_of: BFO:0000050 UBERON:0001257 ! part of trigone of urinary bladder +relationship: BFO:0000050 UBERON:0001257 ! part of trigone of urinary bladder [Term] id: UBERON:0005010 @@ -21314,8 +21318,8 @@ synonym: "vesical neck mucous membrane" EXACT [] synonym: "vesical neck organ mucosa" EXACT [] is_a: UBERON:0001259 ! mucosa of urinary bladder intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001258 ! neck of urinary bladder -relationship: BFO:0000050 UBERON:0001258 ! neck of urinary bladder +intersection_of: BFO:0000050 UBERON:0001258 ! part of neck of urinary bladder +relationship: BFO:0000050 UBERON:0001258 ! part of neck of urinary bladder [Term] id: UBERON:0005013 @@ -21330,8 +21334,8 @@ synonym: "mucous membrane of male urethra" EXACT [] synonym: "organ mucosa of male urethra" EXACT [] is_a: UBERON:0012299 ! mucosa of urethra intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001333 ! male urethra -relationship: BFO:0000050 UBERON:0001333 ! male urethra +intersection_of: BFO:0000050 UBERON:0001333 ! part of male urethra +relationship: BFO:0000050 UBERON:0001333 ! part of male urethra [Term] id: UBERON:0005014 @@ -21346,8 +21350,8 @@ synonym: "mucous membrane of female urethra" EXACT [] synonym: "organ mucosa of female urethra" EXACT [] is_a: UBERON:0012299 ! mucosa of urethra intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001334 ! female urethra -relationship: BFO:0000050 UBERON:0001334 ! female urethra +intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra +relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0005017 @@ -21362,8 +21366,8 @@ synonym: "mucous membrane of lacrimal sac" EXACT [] synonym: "organ mucosa of lacrimal sac" EXACT [] is_a: UBERON:0005043 ! mucosa of nasolacrimal duct intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001351 ! lacrimal sac -relationship: BFO:0000050 UBERON:0001351 ! lacrimal sac +intersection_of: BFO:0000050 UBERON:0001351 ! part of lacrimal sac +relationship: BFO:0000050 UBERON:0001351 ! part of lacrimal sac [Term] id: UBERON:0005020 @@ -21380,8 +21384,8 @@ synonym: "tongue organ mucosa" EXACT [] synonym: "tunica mucosa linguae" EXACT [] is_a: UBERON:0003729 ! mouth mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001723 ! tongue -relationship: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0005022 @@ -21414,8 +21418,8 @@ is_a: UBERON:0000355 ! pharyngeal mucosa is_a: UBERON:0000379 ! tracheal mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001728 ! nasopharynx -relationship: BFO:0000050 UBERON:0001728 ! nasopharynx +intersection_of: BFO:0000050 UBERON:0001728 ! part of nasopharynx +relationship: BFO:0000050 UBERON:0001728 ! part of nasopharynx [Term] id: UBERON:0005026 @@ -21432,8 +21436,8 @@ synonym: "organ mucosa of middle ear" EXACT [] synonym: "tunica mucosa cavitatis tympanicae" EXACT [] is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001756 ! middle ear -relationship: BFO:0000050 UBERON:0001756 ! middle ear +intersection_of: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear [Term] id: UBERON:0005029 @@ -21450,8 +21454,8 @@ synonym: "organ mucosa of lacrimal canaliculus" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0001770 ! lacrimal canaliculus -relationship: BFO:0000050 UBERON:0001770 ! lacrimal canaliculus +intersection_of: BFO:0000050 UBERON:0001770 ! part of lacrimal canaliculus +relationship: BFO:0000050 UBERON:0001770 ! part of lacrimal canaliculus [Term] id: UBERON:0005033 @@ -21477,8 +21481,8 @@ synonym: "tunica mucosa vesicae biliaris" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002110 ! gall bladder -relationship: BFO:0000050 UBERON:0002110 ! gall bladder +intersection_of: BFO:0000050 UBERON:0002110 ! part of gall bladder +relationship: BFO:0000050 UBERON:0002110 ! part of gall bladder [Term] id: UBERON:0005039 @@ -21501,8 +21505,8 @@ synonym: "organ mucosa of bronchiole" EXACT [] synonym: "organ mucosa of lobular bronchiole" EXACT [] is_a: UBERON:0000410 ! bronchial mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002186 ! bronchiole -relationship: BFO:0000050 UBERON:0002186 ! bronchiole +intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole +relationship: BFO:0000050 UBERON:0002186 ! part of bronchiole [Term] id: UBERON:0005040 @@ -21525,8 +21529,8 @@ synonym: "terminal bronchiole mucous membrane" EXACT [] synonym: "terminal bronchiole organ mucosa" EXACT [] is_a: UBERON:0005039 ! mucosa of bronchiole intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002187 ! terminal bronchiole -relationship: BFO:0000050 UBERON:0002187 ! terminal bronchiole +intersection_of: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole +relationship: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole [Term] id: UBERON:0005041 @@ -21549,8 +21553,8 @@ synonym: "respiratory bronchiole mucous membrane" EXACT [] synonym: "respiratory bronchiole organ mucosa" EXACT [] is_a: UBERON:0005039 ! mucosa of bronchiole intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002188 ! respiratory bronchiole -relationship: BFO:0000050 UBERON:0002188 ! respiratory bronchiole +intersection_of: BFO:0000050 UBERON:0002188 ! part of respiratory bronchiole +relationship: BFO:0000050 UBERON:0002188 ! part of respiratory bronchiole [Term] id: UBERON:0005042 @@ -21564,8 +21568,8 @@ synonym: "tympanic membrane mucosa" EXACT [] is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0009647 ! tympanic membrane epithelium intersection_of: UBERON:0009647 ! tympanic membrane epithelium -intersection_of: BFO:0000050 UBERON:0010063 ! tympanic cavity epithelium -relationship: BFO:0000050 UBERON:0010063 ! tympanic cavity epithelium +intersection_of: BFO:0000050 UBERON:0010063 ! part of tympanic cavity epithelium +relationship: BFO:0000050 UBERON:0010063 ! part of tympanic cavity epithelium [Term] id: UBERON:0005043 @@ -21583,8 +21587,8 @@ is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0002392 ! nasolacrimal duct -relationship: BFO:0000050 UBERON:0002392 ! nasolacrimal duct +intersection_of: BFO:0000050 UBERON:0002392 ! part of nasolacrimal duct +relationship: BFO:0000050 UBERON:0002392 ! part of nasolacrimal duct [Term] id: UBERON:0005048 @@ -21611,8 +21615,8 @@ synonym: "uterine tube organ mucosa" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0003889 ! fallopian tube -relationship: BFO:0000050 UBERON:0003889 ! fallopian tube +intersection_of: BFO:0000050 UBERON:0003889 ! part of fallopian tube +relationship: BFO:0000050 UBERON:0003889 ! part of fallopian tube [Term] id: UBERON:0005055 @@ -21621,8 +21625,8 @@ def: "An organ part that is part of a long bone [Automatically generated definit synonym: "long bone zone" EXACT [] is_a: UBERON:0005913 ! zone of bone organ intersection_of: UBERON:0005913 ! zone of bone organ -intersection_of: BFO:0000050 UBERON:0002495 ! long bone -relationship: BFO:0000050 UBERON:0002495 ! long bone +intersection_of: BFO:0000050 UBERON:0002495 ! part of long bone +relationship: BFO:0000050 UBERON:0002495 ! part of long bone [Term] id: UBERON:0005056 @@ -21635,7 +21639,7 @@ synonym: "organa genitalia feminina externa" RELATED [] is_a: UBERON:0003134 ! female reproductive organ is_a: UBERON:0004176 ! external genitalia intersection_of: UBERON:0004176 ! external genitalia -intersection_of: BFO:0000050 UBERON:0000474 ! female reproductive system +intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system disjoint_from: UBERON:0009196 ! indifferent external genitalia [Term] @@ -21645,8 +21649,8 @@ def: "An organ that is part of a immune system [Automatically generated definiti synonym: "immune system organ" EXACT [] is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0002405 ! immune system -relationship: BFO:0000050 UBERON:0002405 ! immune system +intersection_of: BFO:0000050 UBERON:0002405 ! part of immune system +relationship: BFO:0000050 UBERON:0002405 ! part of immune system [Term] id: UBERON:0005058 @@ -21657,15 +21661,15 @@ synonym: "hemopoietic or lymphoid gland" EXACT [] synonym: "hemopoietic or lymphoid organ" BROAD [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0002193 ! hemolymphoid system -relationship: BFO:0000050 UBERON:0002193 ! hemolymphoid system +intersection_of: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system +relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system [Term] id: UBERON:0005061 name: neural groove def: "The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003075 ! neural plate +relationship: BFO:0000050 UBERON:0003075 ! part of neural plate [Term] id: UBERON:0005062 @@ -21677,7 +21681,7 @@ is_a: UBERON:0005157 ! epithelial fold is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0005061 ! neural groove +relationship: BFO:0000050 UBERON:0005061 ! part of neural groove [Term] id: UBERON:0005068 @@ -21685,7 +21689,7 @@ name: neural rod def: "A solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [] synonym: "neural tube rod" RELATED [] is_a: UBERON:0016879 ! future central nervous system -relationship: RO:0002202 UBERON:0007135 ! neural keel +relationship: RO:0002202 UBERON:0007135 ! develops_from neural keel [Term] id: UBERON:0005080 @@ -21706,7 +21710,7 @@ def: "An ectodermal placode is a thickening of the ectoderm that is the primordi synonym: "epithelial placode" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000924 ! ectoderm +relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm [Term] id: UBERON:0005086 @@ -21718,8 +21722,8 @@ synonym: "hair peg" RELATED [] synonym: "hair placode" EXACT [] synonym: "vibrissa placode" NARROW [] is_a: UBERON:0011817 ! skin appendage placode -relationship: RO:0002202 UBERON:0001003 ! skin epidermis -relationship: RO:0002202 UBERON:0011272 ! embryonic skin basal layer +relationship: RO:0002202 UBERON:0001003 ! develops_from skin epidermis +relationship: RO:0002202 UBERON:0011272 ! develops_from embryonic skin basal layer [Term] id: UBERON:0005087 @@ -21741,7 +21745,7 @@ name: sebaceous gland placode def: "A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]." [] is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0011814 ! non-neurogenic ectodermal placode -relationship: RO:0002202 UBERON:0011272 ! embryonic skin basal layer +relationship: RO:0002202 UBERON:0011272 ! develops_from embryonic skin basal layer [Term] id: UBERON:0005089 @@ -21749,7 +21753,7 @@ name: sweat gland placode def: "An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [] is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0011814 ! non-neurogenic ectodermal placode -relationship: RO:0002202 UBERON:0011272 ! embryonic skin basal layer +relationship: RO:0002202 UBERON:0011272 ! develops_from embryonic skin basal layer [Term] id: UBERON:0005090 @@ -21766,7 +21770,7 @@ name: kidney rudiment def: "." [] synonym: "kidney anlage" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: RO:0002202 UBERON:0007687 ! kidney field +relationship: RO:0002202 UBERON:0007687 ! develops_from kidney field [Term] id: UBERON:0005096 @@ -21783,7 +21787,7 @@ synonym: "thin descending limb of loop of Henle" RELATED [] synonym: "thin descending limb of the loop of Henle" RELATED [] synonym: "thin descending loop of Henle" RELATED [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0004136 ! intermediate tubule +relationship: BFO:0000050 UBERON:0004136 ! part of intermediate tubule [Term] id: UBERON:0005097 @@ -21794,7 +21798,7 @@ synonym: "kidney connecting tubule" EXACT [] synonym: "tubulus renalis arcuatus" RELATED [] is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0012275 ! meso-epithelium -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme [Term] id: UBERON:0005103 @@ -21803,8 +21807,8 @@ def: "An epithelium that is part of a mesonephros [Automatically generated defin is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005106 @@ -21814,7 +21818,7 @@ is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005108 ! metanephric epithelium is_a: UBERON:0006555 ! excretory tube intersection_of: UBERON:0003914 ! epithelial tube -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005108 @@ -21823,8 +21827,8 @@ def: "An epithelium is a tissue that covers the internal or external surfaces of is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005109 @@ -21832,8 +21836,8 @@ name: metanephric smooth muscle tissue def: "Any smooth muscle tissue that is part of a metanephros." [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005110 @@ -21842,10 +21846,10 @@ def: "A metanephric nephron is the functional unit of the metanephros[GO]." [] is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme -relationship: RO:0002202 UBERON:0010535 ! primitive metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme +relationship: RO:0002495 UBERON:0010535 ! immediate transformation of primitive metanephric nephron [Term] id: UBERON:0005111 @@ -21854,15 +21858,15 @@ def: "Metanephric pyramids are the conical masses that constitute the renal medu is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004200 ! kidney pyramid intersection_of: UBERON:0004200 ! kidney pyramid -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005113 name: metanephric cortex mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: RO:0002202 UBERON:0010531 ! metanephros induced blastemal cells +relationship: RO:0002202 UBERON:0010531 ! develops_from metanephros induced blastemal cells [Term] id: UBERON:0005114 @@ -21871,8 +21875,8 @@ def: "The metanephric ascending thin limb is a segment of a nephron tubule in th is_a: UBERON:0004193 ! loop of Henle ascending limb thin segment is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0004193 ! loop of Henle ascending limb thin segment -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005129 ! metanephric distal tubule +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005129 ! part of metanephric distal tubule [Term] id: UBERON:0005115 @@ -21881,9 +21885,9 @@ def: "The metanephric cortical collecting duct is the portion of the metanephric is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004203 ! cortical collecting duct intersection_of: UBERON:0004203 ! cortical collecting duct -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004737 ! metanephric collecting duct -relationship: BFO:0000050 UBERON:0010533 ! metanephros cortex +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004737 ! part of metanephric collecting duct +relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0005116 @@ -21892,8 +21896,8 @@ def: "It extends to the tip of the metanephric loop of Henle[GO]." [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005096 ! descending thin limb intersection_of: UBERON:0005096 ! descending thin limb -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005130 ! metanephric loop of Henle +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005130 ! part of metanephric loop of Henle [Term] id: UBERON:0005117 @@ -21902,9 +21906,9 @@ def: "The metanephric distal convoluted tubule is a portion of the metanephric n is_a: UBERON:0001292 ! distal convoluted tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001292 ! distal convoluted tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: BFO:0000050 UBERON:0010533 ! metanephros cortex +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0005119 @@ -21912,8 +21916,8 @@ name: metanephric glomerular mesangium def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [] is_a: UBERON:0002320 ! glomerular mesangium intersection_of: UBERON:0002320 ! glomerular mesangium -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005133 ! metanephric glomerulus vasculature +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005133 ! part of metanephric glomerulus vasculature [Term] id: UBERON:0005122 @@ -21922,8 +21926,8 @@ def: "The metanephric macula densa is an area of specialized cells in the distal is_a: UBERON:0002335 ! macula densa is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0002335 ! macula densa -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004738 ! metanephric juxtaglomerular apparatus +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004738 ! part of metanephric juxtaglomerular apparatus [Term] id: UBERON:0005124 @@ -21932,9 +21936,9 @@ def: "The metanephric proximal convoluted tubule is the most proximal portion of is_a: UBERON:0001287 ! proximal convoluted tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001287 ! proximal convoluted tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: BFO:0000050 UBERON:0010533 ! metanephros cortex +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0005125 @@ -21943,10 +21947,10 @@ def: "The metanephric proximal straight tubule is the part of the metanephric de is_a: UBERON:0001290 ! proximal straight tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001290 ! proximal straight tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: BFO:0000050 UBERON:0005151 ! metanephric proximal tubule -relationship: BFO:0000050 UBERON:0010533 ! metanephros cortex +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: BFO:0000050 UBERON:0005151 ! part of metanephric proximal tubule +relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0005127 @@ -21955,8 +21959,8 @@ def: "At the macula densa, the thick ascending limb connects to the distal convo is_a: UBERON:0001291 ! thick ascending limb of loop of Henle is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001291 ! thick ascending limb of loop of Henle -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005129 @@ -21965,8 +21969,8 @@ def: "The metanephric distal tubule is a metanephric nephron tubule that begins is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0004135 ! distal tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005130 @@ -21975,9 +21979,9 @@ def: "The metanephric loop of Henle is a metanephric nephron tubule that connect is_a: UBERON:0001288 ! loop of Henle is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001288 ! loop of Henle -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004136 ! intermediate tubule -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004136 ! part of intermediate tubule +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005133 @@ -21985,8 +21989,8 @@ name: metanephric glomerulus vasculature def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [] is_a: UBERON:0004190 ! renal glomerulus vasculature intersection_of: UBERON:0004190 ! renal glomerulus vasculature -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004736 ! metanephric glomerulus +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004736 ! part of metanephric glomerulus [Term] id: UBERON:0005134 @@ -21995,8 +21999,8 @@ def: "The metanephric nephron epithelium is a tissue that covers the surface of is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0005108 ! metanephric epithelium intersection_of: UBERON:0004211 ! nephron epithelium -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005135 @@ -22005,9 +22009,9 @@ def: "A metanephric glomerular visceral epithelial cell is a specialized epithel is_a: UBERON:0004188 ! glomerular epithelium is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0004188 ! glomerular epithelium -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004736 ! metanephric glomerulus -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004736 ! part of metanephric glomerulus +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005136 @@ -22016,10 +22020,10 @@ def: "The metanephric glomerular endothelium is an epithelial tissue that covers is_a: UBERON:0004189 ! glomerular endothelium is_a: UBERON:0005135 ! metanephric glomerular epithelium intersection_of: UBERON:0004189 ! glomerular endothelium -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004736 ! metanephric glomerulus -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: BFO:0000050 UBERON:0005133 ! metanephric glomerulus vasculature +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004736 ! part of metanephric glomerulus +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: BFO:0000050 UBERON:0005133 ! part of metanephric glomerulus vasculature [Term] id: UBERON:0005144 @@ -22027,9 +22031,9 @@ name: metanephric glomerular capillary def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [] is_a: UBERON:0004212 ! glomerular capillary intersection_of: UBERON:0004212 ! glomerular capillary -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0004736 ! metanephric glomerulus -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0004736 ! part of metanephric glomerulus +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005145 @@ -22037,8 +22041,8 @@ name: metanephric comma-shaped body def: "The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [] is_a: UBERON:0004198 ! comma-shaped body intersection_of: UBERON:0004198 ! comma-shaped body -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005146 @@ -22048,9 +22052,9 @@ is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0001231 ! nephron tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme [Term] id: UBERON:0005147 @@ -22060,8 +22064,8 @@ synonym: "metanephric vesicle" EXACT [] is_a: UBERON:0004209 ! renal vesicle is_a: UBERON:0005108 ! metanephric epithelium intersection_of: UBERON:0004209 ! renal vesicle -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: RO:0002202 UBERON:0005113 ! metanephric cortex mesenchyme +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: RO:0002202 UBERON:0005113 ! develops_from metanephric cortex mesenchyme [Term] id: UBERON:0005148 @@ -22069,8 +22073,8 @@ name: metanephric S-shaped body def: "The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [] is_a: UBERON:0004199 ! S-shaped body intersection_of: UBERON:0004199 ! S-shaped body -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005149 @@ -22079,8 +22083,8 @@ def: "The metanephric connecting tubule is a tubular segment of the metanephric is_a: UBERON:0005097 ! renal connecting tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0005097 ! renal connecting tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005151 @@ -22089,9 +22093,9 @@ def: "The metanephric proximal tubule is a metanephric nephron tubule that conne is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0004134 ! proximal tubule -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005110 ! metanephric nephron -relationship: BFO:0000050 UBERON:0010533 ! metanephros cortex +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron +relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0005153 @@ -22122,8 +22126,8 @@ synonym: "reproductive system element" EXACT [] synonym: "reproductive system structure" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure intersection_of: UBERON:0010000 ! multicellular anatomical structure -intersection_of: BFO:0000050 UBERON:0000990 ! reproductive system -relationship: BFO:0000050 UBERON:0000990 ! reproductive system +intersection_of: BFO:0000050 UBERON:0000990 ! part of reproductive system +relationship: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0005157 @@ -22142,8 +22146,8 @@ synonym: "parenchyma of CNS" EXACT [] is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: BFO:0000050 UBERON:0001017 ! central nervous system +intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0005162 @@ -22163,7 +22167,7 @@ synonym: "ascending limb of Henle's loop" EXACT [] synonym: "distal straight tubule" RELATED [] synonym: "loop of Henle ascending limb" EXACT [] is_a: UBERON:0004135 ! distal tubule -relationship: BFO:0000050 UBERON:0001288 ! loop of Henle +relationship: BFO:0000050 UBERON:0001288 ! part of loop of Henle [Term] id: UBERON:0005167 @@ -22187,7 +22191,7 @@ synonym: "venae interlobulares renis" EXACT [] synonym: "venae interlobulares renis" RELATED [] is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0005169 @@ -22209,8 +22213,8 @@ def: "An organ or element that is in the abdomen. Examples: spleen, intestine, k synonym: "abdomen organ" EXACT [] is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -relationship: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0005173 @@ -22219,8 +22223,8 @@ def: "An organ or element that is part of the adbominal segment of the organism. synonym: "abdominal segment organ" EXACT [] is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk -relationship: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk +relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0005174 @@ -22230,8 +22234,8 @@ synonym: "back organ" EXACT [] synonym: "dorsal region organ" EXACT [] is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0005175 @@ -22239,8 +22243,8 @@ name: chest organ def: "An organ that is part of a chest [Automatically generated definition]." [] is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0001443 ! chest -relationship: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0005176 @@ -22253,7 +22257,7 @@ synonym: "organum enameleum" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster -relationship: BFO:0000050 UBERON:0008281 ! tooth bud +relationship: BFO:0000050 UBERON:0008281 ! part of tooth bud [Term] id: UBERON:0005177 @@ -22262,8 +22266,8 @@ def: "An organ or element that part of the trunk region. The trunk region can be synonym: "trunk organ" EXACT [] is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0005178 @@ -22281,8 +22285,8 @@ synonym: "pelvis organ" EXACT [] synonym: "pelvis region organ" EXACT [] is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0002355 ! pelvic region of trunk -relationship: BFO:0000050 UBERON:0002355 ! pelvic region of trunk +intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk +relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0005181 @@ -22291,8 +22295,8 @@ def: "An organ that part of the thoracic segment region. This region can be furt synonym: "upper body organ" RELATED [] is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0005184 @@ -22303,8 +22307,8 @@ is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0001037 ! strand of hair -relationship: BFO:0000050 UBERON:0001037 ! strand of hair +intersection_of: BFO:0000050 UBERON:0001037 ! part of strand of hair +relationship: BFO:0000050 UBERON:0001037 ! part of strand of hair [Term] id: UBERON:0005185 @@ -22314,21 +22318,16 @@ synonym: "kidney medulla collecting duct" EXACT [] synonym: "medullary collecting duct" EXACT [] is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube -intersection_of: BFO:0000050 UBERON:0000362 ! renal medulla -intersection_of: BFO:0000050 UBERON:0001232 ! collecting duct of renal tubule -relationship: BFO:0000050 UBERON:0000362 ! renal medulla -relationship: BFO:0000050 UBERON:0001232 ! collecting duct of renal tubule +intersection_of: BFO:0000050 UBERON:0000362 ! part of renal medulla +intersection_of: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule +relationship: BFO:0000050 UBERON:0000362 ! part of renal medulla +relationship: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule [Term] id: UBERON:0005186 is_obsolete: true replaced_by: UBERON:0004204 -[Term] -id: UBERON:0005187 -is_obsolete: true -replaced_by: UBERON:0004205 - [Term] id: UBERON:0005194 name: thoracic vein @@ -22336,7 +22335,7 @@ def: "A vein that is part of a thorax [Automatically generated definition]." [] is_a: UBERON:0001638 ! vein is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0005196 @@ -22349,8 +22348,8 @@ synonym: "splenic germinal center" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010754 ! germinal center intersection_of: UBERON:0010754 ! germinal center -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: BFO:0000050 UBERON:0004042 ! spleen secondary B follicle +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: BFO:0000050 UBERON:0004042 ! part of spleen secondary B follicle [Term] id: UBERON:0005200 @@ -22363,8 +22362,8 @@ synonym: "mammary gland" BROAD [] is_a: UBERON:0001911 ! mammary gland is_a: UBERON:0005175 ! chest organ intersection_of: UBERON:0001911 ! mammary gland -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0000310 ! breast +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0000310 ! part of breast [Term] id: UBERON:0005202 @@ -22372,9 +22371,9 @@ name: distal straight tubule macula densa def: "A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]." [] is_a: UBERON:0002335 ! macula densa intersection_of: UBERON:0002335 ! macula densa -intersection_of: BFO:0000050 UBERON:0001291 ! thick ascending limb of loop of Henle -relationship: BFO:0000050 UBERON:0001291 ! thick ascending limb of loop of Henle -relationship: BFO:0000050 UBERON:0006853 ! renal cortex tubule +intersection_of: BFO:0000050 UBERON:0001291 ! part of thick ascending limb of loop of Henle +relationship: BFO:0000050 UBERON:0001291 ! part of thick ascending limb of loop of Henle +relationship: BFO:0000050 UBERON:0006853 ! part of renal cortex tubule [Term] id: UBERON:0005205 @@ -22384,8 +22383,8 @@ is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0005206 @@ -22395,8 +22394,8 @@ synonym: "choroid plexus stromal matrix" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0001886 ! choroid plexus -relationship: BFO:0000050 UBERON:0001886 ! choroid plexus +intersection_of: BFO:0000050 UBERON:0001886 ! part of choroid plexus +relationship: BFO:0000050 UBERON:0001886 ! part of choroid plexus [Term] id: UBERON:0005207 @@ -22404,8 +22403,8 @@ name: tonsil capsule def: "A capsule that is part of a tonsil [Automatically generated definition]." [] is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule -intersection_of: BFO:0000050 UBERON:0002372 ! tonsil -relationship: BFO:0000050 UBERON:0002372 ! tonsil +intersection_of: BFO:0000050 UBERON:0002372 ! part of tonsil +relationship: BFO:0000050 UBERON:0002372 ! part of tonsil [Term] id: UBERON:0005211 @@ -22418,9 +22417,9 @@ synonym: "renal medullary interstitial tissue" EXACT [] synonym: "renal medullary interstitium" EXACT [] is_a: UBERON:0005215 ! kidney interstitium intersection_of: UBERON:0005169 ! interstitial tissue -intersection_of: BFO:0000050 UBERON:0000362 ! renal medulla -relationship: BFO:0000050 UBERON:0000362 ! renal medulla -relationship: BFO:0000050 UBERON:0005215 ! kidney interstitium +intersection_of: BFO:0000050 UBERON:0000362 ! part of renal medulla +relationship: BFO:0000050 UBERON:0000362 ! part of renal medulla +relationship: BFO:0000050 UBERON:0005215 ! part of kidney interstitium [Term] id: UBERON:0005212 @@ -22433,7 +22432,7 @@ synonym: "testis interstitial tissue" EXACT [] synonym: "testis interstitium" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005169 ! interstitial tissue -relationship: BFO:0000050 UBERON:0000473 ! testis +relationship: BFO:0000050 UBERON:0000473 ! part of testis [Term] id: UBERON:0005213 @@ -22443,9 +22442,9 @@ synonym: "kidney outer medulla interstitium" EXACT [] synonym: "outer medullary interstitium" EXACT [] is_a: UBERON:0005211 ! renal medulla interstitium intersection_of: UBERON:0005169 ! interstitial tissue -intersection_of: BFO:0000050 UBERON:0001293 ! outer medulla of kidney -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney -relationship: BFO:0000050 UBERON:0005211 ! renal medulla interstitium +intersection_of: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney +relationship: BFO:0000050 UBERON:0005211 ! part of renal medulla interstitium [Term] id: UBERON:0005214 @@ -22456,9 +22455,9 @@ synonym: "kidney inner medulla interstitium" EXACT [] synonym: "papillary interstitium" RELATED [] is_a: UBERON:0005211 ! renal medulla interstitium intersection_of: UBERON:0005169 ! interstitial tissue -intersection_of: BFO:0000050 UBERON:0001294 ! inner medulla of kidney -relationship: BFO:0000050 UBERON:0001294 ! inner medulla of kidney -relationship: BFO:0000050 UBERON:0005211 ! renal medulla interstitium +intersection_of: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney +relationship: BFO:0000050 UBERON:0001294 ! part of inner medulla of kidney +relationship: BFO:0000050 UBERON:0005211 ! part of renal medulla interstitium [Term] id: UBERON:0005215 @@ -22473,8 +22472,8 @@ synonym: "stroma of kidney" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0005169 ! interstitial tissue intersection_of: UBERON:0005169 ! interstitial tissue -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0005216 @@ -22482,8 +22481,8 @@ name: optic eminence surface ectoderm def: "An external ectoderm that is part of a optic eminence [Automatically generated definition]." [] is_a: UBERON:0000076 ! external ectoderm intersection_of: UBERON:0000076 ! external ectoderm -intersection_of: BFO:0000050 UBERON:0004348 ! optic eminence -relationship: BFO:0000050 UBERON:0005234 ! optic eminence ectoderm +intersection_of: BFO:0000050 UBERON:0004348 ! part of optic eminence +relationship: BFO:0000050 UBERON:0005234 ! part of optic eminence ectoderm [Term] id: UBERON:0005225 @@ -22491,9 +22490,9 @@ name: upper leg epithelium def: "An epithelium that is part of a hindlimb stylopod [Automatically generated definition]." [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: RO:0002202 UBERON:0003371 ! pelvic appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: RO:0002202 UBERON:0003371 ! develops_from pelvic appendage bud ectoderm [Term] id: UBERON:0005226 @@ -22505,9 +22504,9 @@ synonym: "toe epithelium" EXACT [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: RO:0002202 UBERON:0003248 ! epithelium of footplate +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: RO:0002202 UBERON:0003248 ! develops_from epithelium of footplate [Term] id: UBERON:0005227 @@ -22519,9 +22518,9 @@ synonym: "hand digit epithelium" NARROW [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit -relationship: RO:0002202 UBERON:0010332 ! epithelium of handplate +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: RO:0002202 UBERON:0010332 ! develops_from epithelium of handplate [Term] id: UBERON:0005228 @@ -22529,9 +22528,9 @@ name: upper arm epithelium def: "An epithelium that is part of a forelimb stylopod [Automatically generated definition]." [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: RO:0002202 UBERON:0003372 ! pectoral appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: RO:0002202 UBERON:0003372 ! develops_from pectoral appendage bud ectoderm [Term] id: UBERON:0005233 @@ -22541,9 +22540,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0000924 ! ectoderm is_a: UBERON:0014702 ! frontonasal process epithelium intersection_of: UBERON:0000924 ! ectoderm -intersection_of: BFO:0000050 UBERON:0004068 ! medial nasal prominence -relationship: BFO:0000050 UBERON:0004068 ! medial nasal prominence -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +intersection_of: BFO:0000050 UBERON:0004068 ! part of medial nasal prominence +relationship: BFO:0000050 UBERON:0004068 ! part of medial nasal prominence +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0005234 @@ -22551,8 +22550,8 @@ name: optic eminence ectoderm def: "An ectoderm that is part of a optic eminence [Automatically generated definition]." [] is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm -intersection_of: BFO:0000050 UBERON:0004348 ! optic eminence -relationship: BFO:0000050 UBERON:0004348 ! optic eminence +intersection_of: BFO:0000050 UBERON:0004348 ! part of optic eminence +relationship: BFO:0000050 UBERON:0004348 ! part of optic eminence [Term] id: UBERON:0005243 @@ -22562,8 +22561,8 @@ synonym: "endocardium of interventricular septum" EXACT [] synonym: "interventricular septum endocardial tissue" RELATED [] is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium -intersection_of: BFO:0000050 UBERON:0002094 ! interventricular septum -relationship: BFO:0000050 UBERON:0002094 ! interventricular septum +intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum +relationship: BFO:0000050 UBERON:0002094 ! part of interventricular septum [Term] id: UBERON:0005248 @@ -22572,8 +22571,8 @@ def: "A myocardium that is part of a bulbus cordis [Automatically generated defi synonym: "bulbus cordis cardiac muscle" RELATED [] is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium -intersection_of: BFO:0000050 UBERON:0004706 ! bulbus cordis -relationship: BFO:0000050 UBERON:0004706 ! bulbus cordis +intersection_of: BFO:0000050 UBERON:0004706 ! part of bulbus cordis +relationship: BFO:0000050 UBERON:0004706 ! part of bulbus cordis [Term] id: UBERON:0005249 @@ -22582,8 +22581,8 @@ def: "A renal pelvis that is part of a metanephros." [] synonym: "metanephros pelvis" EXACT [] is_a: UBERON:0001224 ! renal pelvis intersection_of: UBERON:0001224 ! renal pelvis -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005250 @@ -22592,8 +22591,8 @@ def: "A gland that is part of a stomodeum." [] synonym: "stomatodaeum gland" EXACT [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000930 ! stomodeum -relationship: BFO:0000050 UBERON:0000930 ! stomodeum +intersection_of: BFO:0000050 UBERON:0000930 ! part of stomodeum +relationship: BFO:0000050 UBERON:0000930 ! part of stomodeum [Term] id: UBERON:0005253 @@ -22605,9 +22604,9 @@ synonym: "desmocranium" RELATED [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0009142 ! entire embryonic mesenchyme +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme [Term] id: UBERON:0005254 @@ -22615,8 +22614,8 @@ name: upper leg mesenchyme def: "Mesenchyme that is part of a developing hindlimb stylopod [Automatically generated definition]." [] is_a: UBERON:0003860 ! hindlimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000376 ! hindlimb stylopod -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +intersection_of: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0005255 @@ -22631,9 +22630,9 @@ is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010702 ! digit mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: RO:0002202 UBERON:0003328 ! mesenchyme of footplate +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: RO:0002202 UBERON:0003328 ! develops_from mesenchyme of footplate [Term] id: UBERON:0005256 @@ -22643,10 +22642,10 @@ synonym: "trunk and cervical mesenchyme" RELATED [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000922 ! embryo -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0009142 ! entire embryonic mesenchyme +intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme [Term] id: UBERON:0005257 @@ -22662,9 +22661,9 @@ is_a: UBERON:0003859 ! forelimb mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010702 ! digit mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0002389 ! manual digit -relationship: RO:0002202 UBERON:0009523 ! mesenchyme of handplate +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: RO:0002202 UBERON:0009523 ! develops_from mesenchyme of handplate [Term] id: UBERON:0005258 @@ -22672,8 +22671,8 @@ name: upper arm mesenchyme def: "Mesenchyme that is part of a developing forelimb stylopod [Automatically generated definition]." [] is_a: UBERON:0003859 ! forelimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0005267 @@ -22689,7 +22688,7 @@ synonym: "renal cortex arterial system" RELATED [] synonym: "renal cortex artery" EXACT [] is_a: UBERON:0001637 ! artery is_a: UBERON:0003644 ! kidney arterial blood vessel -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0005269 @@ -22699,7 +22698,7 @@ synonym: "kidney cortex vein" RELATED [] synonym: "renal cortex venous system" RELATED [] is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0005270 @@ -22710,9 +22709,9 @@ synonym: "kidney cortex interstitium" EXACT [] synonym: "renal cortical interstitial tissue" EXACT [] is_a: UBERON:0005215 ! kidney interstitium intersection_of: UBERON:0005169 ! interstitial tissue -intersection_of: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0005215 ! kidney interstitium +intersection_of: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0005215 ! part of kidney interstitium [Term] id: UBERON:0005271 @@ -22722,7 +22721,7 @@ synonym: "inner cortex of kidney" EXACT [] synonym: "inner renal cortex" EXACT [] synonym: "juxtamedullary cortex of kidney" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0005272 @@ -22741,7 +22740,7 @@ synonym: "ventricular system of neuraxis" EXACT [] synonym: "ventriculi cerebri" RELATED [] is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001017 ! central nervous system +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0005282 @@ -22749,8 +22748,8 @@ name: ventricular system of brain synonym: "brain ventricular system" EXACT [] is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0005281 ! ventricular system of central nervous system +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0005281 ! part of ventricular system of central nervous system [Term] id: UBERON:0005283 @@ -22758,7 +22757,7 @@ name: tela choroidea def: "A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]." [] synonym: "tela chorioidea" RELATED [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0005358 ! ventricle of nervous system +relationship: BFO:0000050 UBERON:0005358 ! part of ventricle of nervous system [Term] id: UBERON:0005287 @@ -22776,8 +22775,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005283 ! tela choroidea -intersection_of: BFO:0000050 UBERON:0002422 ! fourth ventricle -relationship: BFO:0000050 UBERON:0002422 ! fourth ventricle +intersection_of: BFO:0000050 UBERON:0002422 ! part of fourth ventricle +relationship: BFO:0000050 UBERON:0002422 ! part of fourth ventricle [Term] id: UBERON:0005289 @@ -22793,8 +22792,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005283 ! tela choroidea -intersection_of: BFO:0000050 UBERON:0002285 ! telencephalic ventricle -relationship: BFO:0000050 UBERON:0002285 ! telencephalic ventricle +intersection_of: BFO:0000050 UBERON:0002285 ! part of telencephalic ventricle +relationship: BFO:0000050 UBERON:0002285 ! part of telencephalic ventricle [Term] id: UBERON:0005290 @@ -22802,7 +22801,7 @@ name: myelencephalon def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [] synonym: "myelencephalon (medulla oblongata)" RELATED [] is_a: UBERON:0004733 ! segmental subdivision of hindbrain -relationship: RO:0002202 UBERON:0010096 ! future myelencephalon +relationship: RO:0002495 UBERON:0010096 ! immediate transformation of future myelencephalon [Term] id: UBERON:0005291 @@ -22812,8 +22811,8 @@ synonym: "developing tissue" RELATED [] synonym: "portion of embryonic tissue" EXACT [] is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue -intersection_of: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0002050 ! embryonic structure +intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0002050 ! part of embryonic structure [Term] id: UBERON:0005292 @@ -22822,8 +22821,8 @@ def: "Portion of tissue that is contiguous with the embryo and is comprised of p synonym: "extra-embryonic tissue" EXACT [] is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue -intersection_of: BFO:0000050 UBERON:0016887 ! entire extraembryonic component -relationship: BFO:0000050 UBERON:0016887 ! entire extraembryonic component +intersection_of: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component +relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0005294 @@ -22835,8 +22834,8 @@ synonym: "genital ridge" EXACT [] synonym: "gonadal ridge" EXACT [] synonym: "indifferent gonadal ridge" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0004122 ! genitourinary system -relationship: RO:0002202 UBERON:0004876 ! urogenital fold +relationship: BFO:0000050 UBERON:0004122 ! part of genitourinary system +relationship: RO:0002202 UBERON:0004876 ! develops_from urogenital fold [Term] id: UBERON:0005295 @@ -22849,7 +22848,7 @@ synonym: "primitive sex cord" RELATED [] is_a: UBERON:0005154 ! epithelial cord is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0012275 ! meso-epithelium -relationship: RO:0002202 UBERON:0005294 ! gonadal ridge +relationship: RO:0002202 UBERON:0005294 ! develops_from gonadal ridge [Term] id: UBERON:0005296 @@ -22864,8 +22863,8 @@ synonym: "secondary cord" RELATED [] is_a: UBERON:0004911 ! epithelium of female gonad is_a: UBERON:0005295 ! sex cord intersection_of: UBERON:0005295 ! sex cord -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: RO:0002202 UBERON:0010141 ! primitive sex cord of indifferent gonad +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: RO:0002202 UBERON:0010141 ! develops_from primitive sex cord of indifferent gonad [Term] id: UBERON:0005297 @@ -22878,8 +22877,8 @@ synonym: "testis primitive sex cord" RELATED [] is_a: UBERON:0004910 ! epithelium of male gonad is_a: UBERON:0005295 ! sex cord intersection_of: UBERON:0005295 ! sex cord -intersection_of: BFO:0000050 UBERON:0000473 ! testis -relationship: RO:0002202 UBERON:0010141 ! primitive sex cord of indifferent gonad +intersection_of: BFO:0000050 UBERON:0000473 ! part of testis +relationship: RO:0002495 UBERON:0010141 ! immediate transformation of primitive sex cord of indifferent gonad [Term] id: UBERON:0005309 @@ -22888,8 +22887,8 @@ def: "A pronephric nephron is the functional unit of the pronephros[GO]." [] is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0002120 ! pronephros +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0002120 ! part of pronephros [Term] id: UBERON:0005310 @@ -22900,8 +22899,8 @@ synonym: "pronephric tubule" EXACT [] is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0001231 ! nephron tubule -intersection_of: BFO:0000050 UBERON:0005309 ! pronephric nephron -relationship: BFO:0000050 UBERON:0005309 ! pronephric nephron +intersection_of: BFO:0000050 UBERON:0005309 ! part of pronephric nephron +relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron [Term] id: UBERON:0005311 @@ -22909,8 +22908,8 @@ name: mammary placode def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [] synonym: "mammary anlage" RELATED [] is_a: UBERON:0011814 ! non-neurogenic ectodermal placode -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm -relationship: RO:0002202 UBERON:0008425 ! mammary ridge +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm +relationship: RO:0002202 UBERON:0008425 ! develops_from mammary ridge [Term] id: UBERON:0005316 @@ -22920,8 +22919,8 @@ synonym: "endocardium endothelium" EXACT [] synonym: "endothelium of endocardium" EXACT [] is_a: UBERON:0008307 ! heart endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0002165 ! endocardium -relationship: BFO:0000050 UBERON:0002165 ! endocardium +intersection_of: BFO:0000050 UBERON:0002165 ! part of endocardium +relationship: BFO:0000050 UBERON:0002165 ! part of endocardium [Term] id: UBERON:0005317 @@ -22931,8 +22930,8 @@ synonym: "pulmonary artery endothelial tube" EXACT [] is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0002012 ! pulmonary artery -relationship: BFO:0000050 UBERON:0002012 ! pulmonary artery +intersection_of: BFO:0000050 UBERON:0002012 ! part of pulmonary artery +relationship: BFO:0000050 UBERON:0002012 ! part of pulmonary artery [Term] id: UBERON:0005319 @@ -22941,8 +22940,8 @@ def: "The collecting duct is the final common path through which urine flows bef is_a: UBERON:0001232 ! collecting duct of renal tubule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001232 ! collecting duct of renal tubule -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0005320 @@ -22950,8 +22949,8 @@ name: mesonephric juxtaglomerular apparatus def: "The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]." [] is_a: UBERON:0002303 ! juxtaglomerular apparatus intersection_of: UBERON:0002303 ! juxtaglomerular apparatus -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005321 @@ -22959,8 +22958,8 @@ name: mesonephric smooth muscle tissue def: "." [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005322 @@ -22971,9 +22970,9 @@ synonym: "stage IV nephron" RELATED [] is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: RO:0002202 UBERON:0005323 ! mesonephric mesenchyme +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: RO:0002202 UBERON:0005323 ! develops_from mesonephric mesenchyme [Term] id: UBERON:0005323 @@ -22982,8 +22981,8 @@ def: "Mesonephric mesenchyme is the tissue made up of loosely connected mesenchy is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005324 @@ -22992,8 +22991,8 @@ def: "The mesonephric macula densa is an area of specialized cells in the distal is_a: UBERON:0002335 ! macula densa is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0002335 ! macula densa -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005320 ! mesonephric juxtaglomerular apparatus +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005320 ! part of mesonephric juxtaglomerular apparatus [Term] id: UBERON:0005325 @@ -23002,8 +23001,8 @@ def: "The mesonephric glomerulus is a capillary tuft which forms a close network synonym: "glomerulus" BROAD [] is_a: UBERON:0000074 ! renal glomerulus intersection_of: UBERON:0000074 ! renal glomerulus -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005326 @@ -23011,8 +23010,8 @@ name: mesonephric glomerulus vasculature def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [] is_a: UBERON:0004190 ! renal glomerulus vasculature intersection_of: UBERON:0004190 ! renal glomerulus vasculature -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005325 ! mesonephric glomerulus +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005325 ! part of mesonephric glomerulus [Term] id: UBERON:0005327 @@ -23021,9 +23020,9 @@ def: "A mesonephric glomerular visceral epithelial cell is a specialized epithel is_a: UBERON:0004188 ! glomerular epithelium is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0004188 ! glomerular epithelium -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron -relationship: BFO:0000050 UBERON:0005325 ! mesonephric glomerulus +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron +relationship: BFO:0000050 UBERON:0005325 ! part of mesonephric glomerulus [Term] id: UBERON:0005328 @@ -23031,8 +23030,8 @@ name: mesonephric comma-shaped body def: "The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [] is_a: UBERON:0004198 ! comma-shaped body intersection_of: UBERON:0004198 ! comma-shaped body -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005329 @@ -23050,8 +23049,8 @@ def: "The mesonephric nephron epithelium is a tissue that covers the surface of is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0005103 ! mesonephric epithelium intersection_of: UBERON:0004211 ! nephron epithelium -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0005331 @@ -23061,8 +23060,8 @@ synonym: "mesonephric vesicle" EXACT [] is_a: UBERON:0004209 ! renal vesicle is_a: UBERON:0005103 ! mesonephric epithelium intersection_of: UBERON:0004209 ! renal vesicle -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: RO:0002202 UBERON:0010534 ! primitive mesonephric nephron +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: RO:0002202 UBERON:0010534 ! develops_from primitive mesonephric nephron [Term] id: UBERON:0005332 @@ -23070,8 +23069,8 @@ name: mesonephric S-shaped body def: "The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [] is_a: UBERON:0004199 ! S-shaped body intersection_of: UBERON:0004199 ! S-shaped body -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005333 @@ -23083,7 +23082,7 @@ synonym: "mammary primordium" RELATED [] synonym: "milk bud" RELATED [] is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0010371 ! ecto-epithelium -relationship: RO:0002202 UBERON:0005311 ! mammary placode +relationship: RO:0002202 UBERON:0005311 ! develops_from mammary placode [Term] id: UBERON:0005334 @@ -23092,8 +23091,8 @@ def: "A lamina propria that is part of a mucosa of oral region." [] synonym: "lamina propria of oral mucosa" EXACT [] is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0003343 ! mucosa of oral region -relationship: BFO:0000050 UBERON:0003343 ! mucosa of oral region +intersection_of: BFO:0000050 UBERON:0003343 ! part of mucosa of oral region +relationship: BFO:0000050 UBERON:0003343 ! part of mucosa of oral region [Term] id: UBERON:0005337 @@ -23104,8 +23103,8 @@ synonym: "outflow part of ventricle" EXACT [] synonym: "ventricular outflow tract" EXACT [] is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract -intersection_of: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0002082 ! cardiac ventricle +intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle [Term] id: UBERON:0005338 @@ -23113,8 +23112,8 @@ name: outflow tract aortic component def: "An outflow tract that is part of a aorta." [] is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract -intersection_of: BFO:0000050 UBERON:0000947 ! aorta -relationship: BFO:0000050 UBERON:0000947 ! aorta +intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta +relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0005339 @@ -23128,7 +23127,7 @@ def: "A layer in the central nervous system that lines system of communicating c synonym: "region of wall of ventricular system of neuraxis" RELATED [] synonym: "ventricular layer" EXACT [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0005366 @@ -23144,7 +23143,7 @@ synonym: "anterior column" EXACT [] synonym: "spinal cord anterior column" EXACT [] synonym: "ventral column" EXACT [] is_a: UBERON:0016550 ! spinal cord column -relationship: BFO:0000050 UBERON:0002180 ! ventral funiculus of spinal cord +relationship: BFO:0000050 UBERON:0002180 ! part of ventral funiculus of spinal cord [Term] id: UBERON:0005376 @@ -23177,9 +23176,9 @@ is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0004814 ! upper respiratory tract epithelium is_a: UBERON:0019306 ! nose epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001826 ! nasal cavity mucosa -relationship: BFO:0000050 UBERON:0001826 ! nasal cavity mucosa -relationship: BFO:0000050 UBERON:0015788 ! olfactory apparatus chamber +intersection_of: BFO:0000050 UBERON:0001826 ! part of nasal cavity mucosa +relationship: BFO:0000050 UBERON:0001826 ! part of nasal cavity mucosa +relationship: BFO:0000050 UBERON:0015788 ! part of olfactory apparatus chamber [Term] id: UBERON:0005385 @@ -23188,8 +23187,8 @@ def: "An epithelium that is part of the respiratory segment of the nasal mucosa is_a: UBERON:0005384 ! nasal cavity epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0015786 ! respiratory segment of nasal mucosa -relationship: BFO:0000050 UBERON:0015786 ! respiratory segment of nasal mucosa +intersection_of: BFO:0000050 UBERON:0015786 ! part of respiratory segment of nasal mucosa +relationship: BFO:0000050 UBERON:0015786 ! part of respiratory segment of nasal mucosa [Term] id: UBERON:0005386 @@ -23203,11 +23202,11 @@ synonym: "pars olfactoria tunicae mucosae nasi" EXACT [] synonym: "pars olfactoria tunicae mucosae nasi" RELATED [] is_a: UBERON:0001826 ! nasal cavity mucosa intersection_of: UBERON:0001826 ! nasal cavity mucosa -intersection_of: BFO:0000050 UBERON:0005725 ! olfactory system -intersection_of: BFO:0000051 UBERON:0001997 ! olfactory epithelium +intersection_of: BFO:0000050 UBERON:0005725 ! part of olfactory system +intersection_of: BFO:0000051 UBERON:0001997 ! has part olfactory epithelium disjoint_from: UBERON:0015786 ! respiratory segment of nasal mucosa -relationship: BFO:0000050 UBERON:0005725 ! olfactory system -relationship: BFO:0000051 UBERON:0001997 ! olfactory epithelium +relationship: BFO:0000050 UBERON:0005725 ! part of olfactory system +relationship: BFO:0000051 UBERON:0001997 ! has part olfactory epithelium [Term] id: UBERON:0005388 @@ -23215,8 +23214,8 @@ name: photoreceptor array def: "An array of photoreceptors and any supporting cells found in an eye." [] synonym: "light-sensitive tissue" EXACT [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0000970 ! eye -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0000970 ! part of eye +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0005389 @@ -23224,7 +23223,7 @@ name: transparent eye structure def: "A transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array." [] synonym: "lens" NARROW [] is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000050 UBERON:0000970 ! eye +relationship: BFO:0000050 UBERON:0000970 ! part of eye [Term] id: UBERON:0005396 @@ -23242,8 +23241,8 @@ name: female reproductive gland def: "A sex gland that is part of a female reproductive system." [] is_a: UBERON:0003937 ! reproductive gland intersection_of: UBERON:0003937 ! reproductive gland -intersection_of: BFO:0000050 UBERON:0000474 ! female reproductive system -relationship: BFO:0000050 UBERON:0003134 ! female reproductive organ +intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system +relationship: BFO:0000050 UBERON:0003134 ! part of female reproductive organ [Term] id: UBERON:0005399 @@ -23252,8 +23251,8 @@ def: "A sex gland that is part of a male reproductive system." [] synonym: "accessory sex gland" RELATED [] is_a: UBERON:0003937 ! reproductive gland intersection_of: UBERON:0003937 ! reproductive gland -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system -relationship: BFO:0000050 UBERON:0000079 ! male reproductive system +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system +relationship: BFO:0000050 UBERON:0000079 ! part of male reproductive system [Term] id: UBERON:0005401 @@ -23264,8 +23263,8 @@ synonym: "cerebral grey matter" EXACT [] synonym: "cerebral hemisphere grey matter" EXACT [] is_a: UBERON:0011300 ! gray matter of telencephalon intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0001869 ! cerebral hemisphere -relationship: BFO:0000050 UBERON:0001869 ! cerebral hemisphere +intersection_of: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere +relationship: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere [Term] id: UBERON:0005406 @@ -23303,7 +23302,7 @@ synonym: "gastrointestinal system" RELATED [] synonym: "gastrointestinal tract" RELATED [] synonym: "GI tract" RELATED [] is_a: UBERON:0000467 ! anatomical system -relationship: BFO:0000050 UBERON:0001007 ! digestive system +relationship: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0005417 @@ -23337,7 +23336,7 @@ synonym: "forelimb - pectoral fin bud" EXACT [] synonym: "pectoral fin bud" RELATED [] synonym: "pectoral fin buds" RELATED [] is_a: UBERON:0004357 ! paired limb/fin bud -relationship: BFO:0000050 UBERON:0000153 ! anterior region of body +relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body [Term] id: UBERON:0005420 @@ -23347,7 +23346,7 @@ synonym: "hindlimb/pelvic fin bud" EXACT [] synonym: "pelvic fin bud" RELATED [] synonym: "pelvic fin buds" RELATED [] is_a: UBERON:0004357 ! paired limb/fin bud -relationship: BFO:0000050 UBERON:0000154 ! posterior region of body +relationship: BFO:0000050 UBERON:0000154 ! part of posterior region of body [Term] id: UBERON:0005421 @@ -23364,9 +23363,9 @@ synonym: "wing AER" NARROW [] synonym: "wing apical ectodermal ridge" NARROW [] is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge -intersection_of: BFO:0000050 UBERON:0005419 ! pectoral appendage bud -relationship: BFO:0000050 UBERON:0005419 ! pectoral appendage bud -relationship: RO:0002202 UBERON:0003372 ! pectoral appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud +relationship: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud +relationship: RO:0002202 UBERON:0003372 ! develops_from pectoral appendage bud ectoderm [Term] id: UBERON:0005422 @@ -23380,9 +23379,9 @@ synonym: "leg AER" RELATED [] synonym: "lower lmb bud apical ectodermal ridge" NARROW [] is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge -intersection_of: BFO:0000050 UBERON:0005420 ! pelvic appendage bud -relationship: BFO:0000050 UBERON:0005420 ! pelvic appendage bud -relationship: RO:0002202 UBERON:0003371 ! pelvic appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud +relationship: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud +relationship: RO:0002202 UBERON:0003371 ! develops_from pelvic appendage bud ectoderm [Term] id: UBERON:0005423 @@ -23407,7 +23406,7 @@ synonym: "presumptive pigmented epithelia" EXACT [] synonym: "presumptive pigmented epithelium" RELATED [] is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010312 ! immature eye -relationship: BFO:0000050 UBERON:0003072 ! optic cup +relationship: BFO:0000050 UBERON:0003072 ! part of optic cup [Term] id: UBERON:0005425 @@ -23424,7 +23423,7 @@ synonym: "presumptive retina" RELATED [] synonym: "presumptive retinas" EXACT [] is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010312 ! immature eye -relationship: BFO:0000050 UBERON:0003072 ! optic cup +relationship: BFO:0000050 UBERON:0003072 ! part of optic cup [Term] id: UBERON:0005426 @@ -23437,7 +23436,7 @@ synonym: "presumptive lens" RELATED [] synonym: "solid lens vesicle" NARROW [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: RO:0002202 UBERON:0003073 ! lens placode +relationship: RO:0002202 UBERON:0003073 ! develops_from lens placode [Term] id: UBERON:0005427 @@ -23447,7 +23446,7 @@ is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium is_a: UBERON:0010312 ! immature eye is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0005428 @@ -23458,7 +23457,7 @@ synonym: "post-otic neural crest" RELATED [] synonym: "VNC" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0005432 @@ -23469,8 +23468,8 @@ is_a: UBERON:0001637 ! artery is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0004145 ! outflow tract -relationship: RO:0002202 UBERON:0004363 ! pharyngeal arch artery +relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract +relationship: RO:0002202 UBERON:0004363 ! develops_from pharyngeal arch artery [Term] id: UBERON:0005445 @@ -23484,8 +23483,8 @@ synonym: "subdivision of foot" EXACT [] is_a: UBERON:0008784 ! lower limb segment is_a: UBERON:0012139 ! segment of autopod intersection_of: UBERON:0012139 ! segment of autopod -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0005451 @@ -23499,8 +23498,8 @@ synonym: "subdivision of hand" EXACT [] is_a: UBERON:0008785 ! upper limb segment is_a: UBERON:0012139 ! segment of autopod intersection_of: UBERON:0012139 ! segment of autopod -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0005477 @@ -23511,8 +23510,8 @@ synonym: "gastric epithelium of fundus" EXACT [] synonym: "gastric fundus epithelium" EXACT [] is_a: UBERON:0001276 ! epithelium of stomach intersection_of: UBERON:0000485 ! simple columnar epithelium -intersection_of: BFO:0000050 UBERON:0001160 ! fundus of stomach -relationship: BFO:0000050 UBERON:0004994 ! mucosa of fundus of stomach +intersection_of: BFO:0000050 UBERON:0001160 ! part of fundus of stomach +relationship: BFO:0000050 UBERON:0004994 ! part of mucosa of fundus of stomach [Term] id: UBERON:0005483 @@ -23524,8 +23523,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009912 ! anatomical lobe is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0009912 ! anatomical lobe -intersection_of: BFO:0000050 UBERON:0002370 ! thymus -relationship: BFO:0000050 UBERON:0002370 ! thymus +intersection_of: BFO:0000050 UBERON:0002370 ! part of thymus +relationship: BFO:0000050 UBERON:0002370 ! part of thymus [Term] id: UBERON:0005497 @@ -23537,7 +23536,7 @@ synonym: "surface ectoderm" RELATED [] synonym: "ventral ectoderm" RELATED [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: RO:0002202 UBERON:0000924 ! ectoderm +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0005498 @@ -23547,8 +23546,8 @@ synonym: "early primitive heart tube" NARROW [] synonym: "primitive heart tube" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0004291 ! heart rudiment +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: RO:0002202 UBERON:0004291 ! develops_from heart rudiment [Term] id: UBERON:0005562 @@ -23559,9 +23558,9 @@ synonym: "thymic rudiment" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001048 ! primordium is_a: UBERON:0003351 ! pharyngeal epithelium -relationship: BFO:0000050 UBERON:0002405 ! immune system -relationship: BFO:0000050 UBERON:0003295 ! pharyngeal gland -relationship: RO:0002202 UBERON:0007690 ! early pharyngeal endoderm +relationship: BFO:0000050 UBERON:0002405 ! part of immune system +relationship: BFO:0000050 UBERON:0003295 ! part of pharyngeal gland +relationship: RO:0002202 UBERON:0007690 ! develops_from early pharyngeal endoderm [Term] id: UBERON:0005564 @@ -23573,7 +23572,7 @@ synonym: "immature gonad" RELATED [] synonym: "primitive gonad" EXACT [] synonym: "undifferentiated gonad" EXACT [] is_a: UBERON:0001048 ! primordium -relationship: BFO:0000050 UBERON:0000990 ! reproductive system +relationship: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0005565 @@ -23583,7 +23582,7 @@ synonym: "facio acoustic neural crest" EXACT [] is_a: UBERON:0003099 ! cranial neural crest is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007530 ! migrating mesenchyme population -relationship: RO:0002202 UBERON:0003849 ! mesencephalic neural crest +relationship: RO:0002202 UBERON:0003849 ! develops_from mesencephalic neural crest [Term] id: UBERON:0005594 @@ -23595,9 +23594,9 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002329 ! somite is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0002329 ! somite -intersection_of: RO:0002202 UBERON:0009617 ! head paraxial mesoderm -relationship: BFO:0000050 UBERON:0009617 ! head paraxial mesoderm -relationship: RO:0002202 UBERON:0009617 ! head paraxial mesoderm +intersection_of: RO:0002202 UBERON:0009617 ! develops_from head paraxial mesoderm +relationship: BFO:0000050 UBERON:0009617 ! part of head paraxial mesoderm +relationship: RO:0002202 UBERON:0009617 ! develops_from head paraxial mesoderm [Term] id: UBERON:0005597 @@ -23607,8 +23606,8 @@ synonym: "lateral diverticula" RELATED [] synonym: "lung diverticulum" RELATED [] synonym: "lung endoderm" RELATED [] is_a: UBERON:0001048 ! primordium -relationship: BFO:0000050 UBERON:0008947 ! respiratory primordium -relationship: RO:0002202 UBERON:0001041 ! foregut +relationship: BFO:0000050 UBERON:0008947 ! part of respiratory primordium +relationship: RO:0002202 UBERON:0001041 ! develops_from foregut [Term] id: UBERON:0005598 @@ -23616,8 +23615,8 @@ name: trunk somite def: "A somite that is part of a trunk." [] is_a: UBERON:0002329 ! somite intersection_of: UBERON:0002329 ! somite -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0005602 @@ -23625,8 +23624,8 @@ name: dorsal mesogastrium def: "The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum." [] synonym: "dorsal mesentery" RELATED [] is_a: UBERON:0003281 ! mesentery of stomach -relationship: BFO:0000050 UBERON:0002296 ! dorsal mesentery -relationship: BFO:0000050 UBERON:0003281 ! mesentery of stomach +relationship: BFO:0000050 UBERON:0002296 ! part of dorsal mesentery +relationship: BFO:0000050 UBERON:0003281 ! part of mesentery of stomach [Term] id: UBERON:0005604 @@ -23634,22 +23633,22 @@ name: extrahepatic part of hepatic duct synonym: "extrahepatic part of the hepatic duct" EXACT [] synonym: "hepatic duct extrahepatic part" EXACT [] is_a: UBERON:0002394 ! bile duct -relationship: BFO:0000050 UBERON:0003703 ! extrahepatic bile duct -relationship: BFO:0000050 UBERON:0005171 ! hepatic duct +relationship: BFO:0000050 UBERON:0003703 ! part of extrahepatic bile duct +relationship: BFO:0000050 UBERON:0005171 ! part of hepatic duct [Term] id: UBERON:0005613 name: left dorsal aorta is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel -relationship: BFO:0000050 UBERON:0005805 ! dorsal aorta +relationship: BFO:0000050 UBERON:0005805 ! part of dorsal aorta [Term] id: UBERON:0005622 name: right dorsal aorta is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel -relationship: BFO:0000050 UBERON:0005805 ! dorsal aorta +relationship: BFO:0000050 UBERON:0005805 ! part of dorsal aorta [Term] id: UBERON:0005629 @@ -23657,14 +23656,14 @@ name: vascular plexus def: "A vascular network formed by frequent anastomoses between the blood vessels (arteries or veins) of a part." [] synonym: "plexus vasculosus" EXACT [] is_a: UBERON:0002049 ! vasculature -relationship: BFO:0000051 UBERON:0001981 ! blood vessel +relationship: BFO:0000051 UBERON:0001981 ! has part blood vessel [Term] id: UBERON:0005631 name: extraembryonic membrane def: "Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [] is_a: UBERON:0000158 ! membranous layer -relationship: BFO:0000050 UBERON:0016887 ! entire extraembryonic component +relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0005636 @@ -23672,8 +23671,8 @@ name: caecum epithelium def: "An epithelium that is part of a caecum." [] is_a: UBERON:0000397 ! colonic epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0001153 ! caecum +intersection_of: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0001153 ! part of caecum [Term] id: UBERON:0005637 @@ -23681,8 +23680,8 @@ name: pyloric region epithelium def: "An epithelium that is part of a pylorus." [] is_a: UBERON:0001276 ! epithelium of stomach intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001166 ! pylorus -relationship: BFO:0000050 UBERON:0001166 ! pylorus +intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus +relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0005638 @@ -23690,8 +23689,8 @@ name: anterior chamber epithelium def: "An epithelium that is part of a anterior chamber of eyeball." [] is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001766 ! anterior chamber of eyeball -relationship: BFO:0000050 UBERON:0001766 ! anterior chamber of eyeball +intersection_of: BFO:0000050 UBERON:0001766 ! part of anterior chamber of eyeball +relationship: BFO:0000050 UBERON:0001766 ! part of anterior chamber of eyeball [Term] id: UBERON:0005656 @@ -23699,8 +23698,8 @@ name: lens vesicle epithelium def: "An epithelium that is part of a lens vesicle." [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0005426 ! lens vesicle -relationship: BFO:0000050 UBERON:0005426 ! lens vesicle +intersection_of: BFO:0000050 UBERON:0005426 ! part of lens vesicle +relationship: BFO:0000050 UBERON:0005426 ! part of lens vesicle [Term] id: UBERON:0005660 @@ -23709,8 +23708,8 @@ def: "An ectoderm that is part of a pharyngeal arch 2." [] synonym: "2nd pharyngeal arch ectoderm" EXACT [] is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm -intersection_of: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 -relationship: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 +intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 +relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0005661 @@ -23719,8 +23718,8 @@ def: "An ectoderm that is part of a pharyngeal arch 3." [] synonym: "3rd pharyngeal arch ectoderm" EXACT [] is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm -intersection_of: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 -relationship: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 +intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 +relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0005664 @@ -23729,8 +23728,8 @@ def: "An endoderm that is part of a pharyngeal arch 2." [] synonym: "2nd pharyngeal arch endoderm" EXACT [] is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm -intersection_of: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 -relationship: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 +intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 +relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0005665 @@ -23739,16 +23738,16 @@ def: "An endoderm that is part of a pharyngeal arch 3." [] synonym: "3rd pharyngeal arch endoderm" EXACT [] is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm -intersection_of: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 -relationship: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 +intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 +relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0005667 name: connecting stalk mesoderm is_a: UBERON:0003422 ! mesenchyme of umbilical cord is_a: UBERON:0007524 ! dense mesenchyme tissue -relationship: BFO:0000050 UBERON:0002331 ! umbilical cord -relationship: RO:0002202 UBERON:0005728 ! extraembryonic mesoderm +relationship: BFO:0000050 UBERON:0002331 ! part of umbilical cord +relationship: RO:0002202 UBERON:0005728 ! develops_from extraembryonic mesoderm [Term] id: UBERON:0005672 @@ -23758,7 +23757,7 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003364 ! epithelium of right lung intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0005673 @@ -23768,7 +23767,7 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003365 ! epithelium of left lung intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0005677 @@ -23776,8 +23775,8 @@ name: caecum mesentery def: "A mesentery that is part of a caecum." [] is_a: UBERON:0003396 ! mesentery of colon intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0001153 ! caecum +intersection_of: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0001153 ! part of caecum [Term] id: UBERON:0005685 @@ -23785,8 +23784,8 @@ name: midgut dorsal mesentery def: "A dorsal mesentery that is part of a midgut." [] is_a: UBERON:0002296 ! dorsal mesentery intersection_of: UBERON:0002296 ! dorsal mesentery -intersection_of: BFO:0000050 UBERON:0001045 ! midgut -relationship: BFO:0000050 UBERON:0001045 ! midgut +intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut +relationship: BFO:0000050 UBERON:0001045 ! part of midgut [Term] id: UBERON:0005686 @@ -23794,8 +23793,8 @@ name: caecum dorsal mesentery def: "A dorsal mesentery that is part of a caecum." [] is_a: UBERON:0002296 ! dorsal mesentery intersection_of: UBERON:0002296 ! dorsal mesentery -intersection_of: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0001153 ! caecum +intersection_of: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0001153 ! part of caecum [Term] id: UBERON:0005689 @@ -23806,8 +23805,8 @@ synonym: "2nd pharyngeal arch mesenchyme" EXACT [] synonym: "pharyngeal arch 2 mesenchyme" RELATED [] is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 -relationship: BFO:0000050 UBERON:0003066 ! pharyngeal arch 2 +intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 +relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0005690 @@ -23818,8 +23817,8 @@ synonym: "3rd pharyngeal arch mesenchyme" EXACT [] synonym: "pharyngeal arch 3 mesenchyme" RELATED [] is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 -relationship: BFO:0000050 UBERON:0003114 ! pharyngeal arch 3 +intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 +relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0005702 @@ -23828,8 +23827,8 @@ def: "Mesenchyme that is part of a optic eminence." [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0004348 ! optic eminence -relationship: BFO:0000050 UBERON:0004348 ! optic eminence +intersection_of: BFO:0000050 UBERON:0004348 ! part of optic eminence +relationship: BFO:0000050 UBERON:0004348 ! part of optic eminence [Term] id: UBERON:0005711 @@ -23838,9 +23837,9 @@ def: "A mesentery of duodenum that is part of a foregut." [] is_a: UBERON:0003397 ! mesentery of duodenum is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003397 ! mesentery of duodenum -intersection_of: BFO:0000050 UBERON:0001041 ! foregut -relationship: BFO:0000050 UBERON:0001041 ! foregut -relationship: RO:0002202 UBERON:0011642 ! oral epithelium from ectoderm +intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut +relationship: BFO:0000050 UBERON:0001041 ! part of foregut +relationship: RO:0002202 UBERON:0011642 ! develops_from oral epithelium from ectoderm [Term] id: UBERON:0005712 @@ -23850,8 +23849,8 @@ is_a: UBERON:0003284 ! mesentery of midgut is_a: UBERON:0003397 ! mesentery of duodenum is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003397 ! mesentery of duodenum -intersection_of: BFO:0000050 UBERON:0001045 ! midgut -relationship: RO:0002202 UBERON:0011642 ! oral epithelium from ectoderm +intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut +relationship: RO:0002202 UBERON:0011642 ! develops_from oral epithelium from ectoderm [Term] id: UBERON:0005719 @@ -23859,8 +23858,8 @@ name: footplate apical ectodermal ridge def: "An apical ectodermal ridge that is part of a footplate." [] is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge -intersection_of: BFO:0000050 UBERON:0006871 ! embryonic footplate -relationship: BFO:0000050 UBERON:0003373 ! ectoderm of footplate +intersection_of: BFO:0000050 UBERON:0006871 ! part of embryonic footplate +relationship: BFO:0000050 UBERON:0003373 ! part of ectoderm of footplate [Term] id: UBERON:0005720 @@ -23871,8 +23870,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004582 ! venous system is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004582 ! venous system -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0005721 @@ -23885,8 +23884,8 @@ synonym: "pronephric primordium" RELATED [] is_a: UBERON:0000926 ! mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0003064 ! intermediate mesoderm -relationship: RO:0002202 UBERON:0007297 ! presumptive pronephric mesoderm +relationship: BFO:0000050 UBERON:0003064 ! part of intermediate mesoderm +relationship: RO:0002495 UBERON:0007297 ! immediate transformation of presumptive pronephric mesoderm [Term] id: UBERON:0005725 @@ -23908,8 +23907,8 @@ synonym: "extraembryonic mesenchyme" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm -relationship: RO:0002202 UBERON:0008780 ! inner cell mass derived epiblast +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm +relationship: RO:0002202 UBERON:0008780 ! develops_from inner cell mass derived epiblast [Term] id: UBERON:0005729 @@ -23939,7 +23938,7 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0005734 @@ -23953,7 +23952,7 @@ synonym: "tunica adventitia vasorum" RELATED [] synonym: "tunica externa vasorum" RELATED [] is_a: UBERON:0004797 ! blood vessel layer is_a: UBERON:0005742 ! adventitia -relationship: BFO:0000051 UBERON:0011824 ! fibrous connective tissue +relationship: BFO:0000051 UBERON:0011824 ! has part fibrous connective tissue [Term] id: UBERON:0005740 @@ -23964,8 +23963,8 @@ synonym: "tunica interna (intima)(arteriae)" EXACT [] is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0004797 ! blood vessel layer intersection_of: UBERON:0002523 ! tunica intima -intersection_of: BFO:0000050 UBERON:0001637 ! artery -relationship: BFO:0000050 UBERON:0000415 ! artery wall +intersection_of: BFO:0000050 UBERON:0001637 ! part of artery +relationship: BFO:0000050 UBERON:0000415 ! part of artery wall [Term] id: UBERON:0005742 @@ -23974,7 +23973,7 @@ def: "An outermost connective tissue covering of an organ, vessel, or other stru synonym: "tunica advetitia" NARROW [] synonym: "tunica externa" NARROW [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0005744 @@ -23985,8 +23984,8 @@ synonym: "foramens@fr" EXACT [] synonym: "foramina@fr" EXACT [] is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit -intersection_of: BFO:0000050 UBERON:0001474 ! bone element -relationship: BFO:0000050 UBERON:0001474 ! bone element +intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element +relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0005749 @@ -23996,8 +23995,8 @@ synonym: "glomerular capillary tuft" RELATED [] synonym: "glomerulus" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001230 ! glomerular capsule -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme +relationship: BFO:0000050 UBERON:0001230 ! part of glomerular capsule +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme [Term] id: UBERON:0005750 @@ -24017,7 +24016,7 @@ synonym: "parietal layer of glomerular capsule" EXACT [] synonym: "renal glomerular capsule epithelium" EXACT [] is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0004188 ! glomerular epithelium -relationship: BFO:0000050 UBERON:0001230 ! glomerular capsule +relationship: BFO:0000050 UBERON:0001230 ! part of glomerular capsule [Term] id: UBERON:0005751 @@ -24031,7 +24030,7 @@ synonym: "visceral epithelium of Bowman's capsule" EXACT [] synonym: "visceral layer of Bowman's capsule" EXACT [] synonym: "visceral layer of glomerular capsule" EXACT [] is_a: UBERON:0004211 ! nephron epithelium -relationship: BFO:0000050 UBERON:0001230 ! glomerular capsule +relationship: BFO:0000050 UBERON:0001230 ! part of glomerular capsule [Term] id: UBERON:0005753 @@ -24042,14 +24041,14 @@ synonym: "caudal region of nephrogenic cord" EXACT [] synonym: "rear part of nephrogenic cord" EXACT [] synonym: "rear portion of nephrogenic cord" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0004875 ! nephrogenic cord +relationship: BFO:0000050 UBERON:0004875 ! part of nephrogenic cord [Term] id: UBERON:0005754 name: rostral part of nephrogenic cord def: "The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros." [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0004875 ! nephrogenic cord +relationship: BFO:0000050 UBERON:0004875 ! part of nephrogenic cord [Term] id: UBERON:0005760 @@ -24060,15 +24059,15 @@ synonym: "septum urorectale" EXACT [] synonym: "urorectal fold" EXACT [] synonym: "urorectal membrane" EXACT [] is_a: UBERON:0003037 ! septum -relationship: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000050 UBERON:0012361 ! internal anal region +relationship: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000050 UBERON:0012361 ! part of internal anal region [Term] id: UBERON:0005764 name: acellular membrane def: "A acellular anatomical structure that is the bounding layer of a anatomical structure." [] is_a: UBERON:0000476 ! acellular anatomical structure -relationship: BFO:0000050 UBERON:0000061 ! anatomical structure +relationship: BFO:0000050 UBERON:0000061 ! part of anatomical structure [Term] id: UBERON:0005769 @@ -24078,7 +24077,7 @@ synonym: "basement membrane" RELATED [] synonym: "basement membrane of connective tissue" EXACT [] synonym: "membrana basalis" EXACT [] is_a: UBERON:0005764 ! acellular membrane -relationship: BFO:0000050 UBERON:0000483 ! epithelium +relationship: BFO:0000050 UBERON:0000483 ! part of epithelium [Term] id: UBERON:0005777 @@ -24090,8 +24089,8 @@ synonym: "glomerular filtration membrane" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium -intersection_of: BFO:0000050 UBERON:0000074 ! renal glomerulus -relationship: BFO:0000050 UBERON:0004188 ! glomerular epithelium +intersection_of: BFO:0000050 UBERON:0000074 ! part of renal glomerulus +relationship: BFO:0000050 UBERON:0004188 ! part of glomerular epithelium [Term] id: UBERON:0005792 @@ -24099,8 +24098,8 @@ name: nephric ridge def: "Nephric tubules (nephrons) form embryonically along the nephric ridge. The ridge comprises three regions; anterior, middle and posterior. The functional kidney uses nephrons from only one or two regions of the ridge. A pronephric kidney uses only the nephrons from the anterior region of the ridge. A mesonephric kidney uses only the middle region, a metanephric kidney uses only the posterior region and an opisthonephric kidney uses the middle and posterior regions." [] synonym: "nephric cord" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000050 UBERON:0004122 ! genitourinary system +relationship: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000050 UBERON:0004122 ! part of genitourinary system [Term] id: UBERON:0005795 @@ -24118,7 +24117,7 @@ synonym: "portion of aorta" RELATED [] synonym: "segment of aorta" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube -relationship: BFO:0000050 UBERON:0000947 ! aorta +relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0005805 @@ -24133,9 +24132,9 @@ synonym: "dorsal aortic root" RELATED [] synonym: "dorsal aortæ" RELATED [] is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel -relationship: BFO:0000050 UBERON:0002201 ! vasculature of trunk -relationship: RO:0002202 UBERON:0001917 ! endothelium of artery -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm +relationship: BFO:0000050 UBERON:0002201 ! part of vasculature of trunk +relationship: RO:0002202 UBERON:0001917 ! develops_from endothelium of artery +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm [Term] id: UBERON:0005806 @@ -24151,8 +24150,8 @@ def: "A bone tissue that is part of a long bone." [] synonym: "osseous tissue of long bone" RELATED [] is_a: UBERON:0002481 ! bone tissue intersection_of: UBERON:0002481 ! bone tissue -intersection_of: BFO:0000050 UBERON:0002495 ! long bone -relationship: BFO:0000050 UBERON:0002495 ! long bone +intersection_of: BFO:0000050 UBERON:0002495 ! part of long bone +relationship: BFO:0000050 UBERON:0002495 ! part of long bone [Term] id: UBERON:0005837 @@ -24162,8 +24161,8 @@ synonym: "spinal cord fasciculus" EXACT [] is_a: UBERON:0001019 ! nerve fasciculus is_a: UBERON:0011215 ! central nervous system cell part cluster intersection_of: UBERON:0001019 ! nerve fasciculus -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0005838 @@ -24173,9 +24172,9 @@ synonym: "brain fasciculus" EXACT [] is_a: UBERON:0001019 ! nerve fasciculus is_a: UBERON:0011215 ! central nervous system cell part cluster intersection_of: UBERON:0001019 ! nerve fasciculus -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0002316 ! white matter +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0002316 ! part of white matter [Term] id: UBERON:0005856 @@ -24193,8 +24192,8 @@ synonym: "cartilage condensation" EXACT [] synonym: "cartilagenous condensation" EXACT [] synonym: "chondrogenic condensation" EXACT [] is_a: UBERON:0005856 ! developing mesenchymal condensation -relationship: BFO:0000050 UBERON:0004288 ! skeleton -relationship: RO:0002202 UBERON:0005866 ! pre-cartilage condensation +relationship: BFO:0000050 UBERON:0004288 ! part of skeleton +relationship: RO:0002202 UBERON:0005866 ! develops_from pre-cartilage condensation [Term] id: UBERON:0005865 @@ -24213,7 +24212,7 @@ synonym: "precartilagenous condensation" EXACT [] synonym: "prechondrogenic condensation" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005856 ! developing mesenchymal condensation -relationship: BFO:0000050 UBERON:0004288 ! skeleton +relationship: BFO:0000050 UBERON:0004288 ! part of skeleton [Term] id: UBERON:0005867 @@ -24223,8 +24222,8 @@ synonym: "mandibular process" RELATED [] synonym: "mandibular swelling" RELATED [] synonym: "prominentia mandibularis" RELATED [] is_a: UBERON:0012314 ! embryonic facial prominence -relationship: BFO:0000050 UBERON:0000166 ! oral opening -relationship: RO:0002202 UBERON:0007237 ! 1st arch mandibular component +relationship: BFO:0000050 UBERON:0000166 ! part of oral opening +relationship: RO:0002202 UBERON:0007237 ! develops_from 1st arch mandibular component [Term] id: UBERON:0005872 @@ -24262,8 +24261,8 @@ synonym: "tuberculum genitale" RELATED [] synonym: "tuberculum phallicum" RELATED [] synonym: "undifferentiated genital tubercle" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0009196 ! indifferent external genitalia -relationship: RO:0002202 UBERON:0004874 ! somatopleure +relationship: BFO:0000050 UBERON:0009196 ! part of indifferent external genitalia +relationship: RO:0002202 UBERON:0004874 ! develops_from somatopleure [Term] id: UBERON:0005879 @@ -24280,7 +24279,7 @@ synonym: "pharyngeal slit" RELATED [] synonym: "sulcus pharyngei" RELATED [] is_a: UBERON:0006846 ! surface groove is_a: UBERON:0016545 ! pharyngeal ectoderm -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm [Term] id: UBERON:0005881 @@ -24289,7 +24288,7 @@ def: "A subdivision of the autopod that corresponds to one or more bones arrange synonym: "digit or predigit" RELATED [] synonym: "limb outgrowth" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0002470 ! autopod region +relationship: BFO:0000050 UBERON:0002470 ! part of autopod region [Term] id: UBERON:0005891 @@ -24298,7 +24297,7 @@ def: "The epithelial lining of the surface of the coelom." [] synonym: "celomic epithelium" EXACT [] synonym: "germinal epithelium of Waldeyer" EXACT [] is_a: UBERON:0000483 ! epithelium -relationship: BFO:0000050 UBERON:0011997 ! coelom +relationship: BFO:0000050 UBERON:0011997 ! part of coelom [Term] id: UBERON:0005893 @@ -24306,8 +24305,8 @@ name: leg bone def: "A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any pes phalanx" [] is_a: UBERON:0003464 ! hindlimb bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0000978 ! leg -relationship: BFO:0000050 UBERON:0000978 ! leg +intersection_of: BFO:0000050 UBERON:0000978 ! part of leg +relationship: BFO:0000050 UBERON:0000978 ! part of leg [Term] id: UBERON:0005897 @@ -24324,8 +24323,8 @@ synonym: "hand bone" EXACT [] is_a: UBERON:0008962 ! forelimb bone is_a: UBERON:0011250 ! autopod bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0001442 ! skeleton of manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0001442 ! part of skeleton of manus [Term] id: UBERON:0005899 @@ -24339,8 +24338,8 @@ synonym: "foot bone" EXACT [] is_a: UBERON:0003464 ! hindlimb bone is_a: UBERON:0011250 ! autopod bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0001445 ! skeleton of pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0001445 ! part of skeleton of pes [Term] id: UBERON:0005903 @@ -24354,8 +24353,8 @@ synonym: "seminal vesicle duct" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0000998 ! seminal vesicle -relationship: BFO:0000050 UBERON:0000998 ! seminal vesicle +intersection_of: BFO:0000050 UBERON:0000998 ! part of seminal vesicle +relationship: BFO:0000050 UBERON:0000998 ! part of seminal vesicle [Term] id: UBERON:0005904 @@ -24364,16 +24363,16 @@ def: "Any of the ducts that are part of a male reproductive system." [] is_a: UBERON:0000058 ! duct is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system -relationship: BFO:0000050 UBERON:0000079 ! male reproductive system +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system +relationship: BFO:0000050 UBERON:0000079 ! part of male reproductive system [Term] id: UBERON:0005906 name: serous sac def: "Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA]" [] is_a: UBERON:0000062 ! organ -relationship: BFO:0000051 UBERON:0000042 ! serous membrane -relationship: BFO:0000051 UBERON:0002553 ! anatomical cavity +relationship: BFO:0000051 UBERON:0000042 ! has part serous membrane +relationship: BFO:0000051 UBERON:0002553 ! has part anatomical cavity [Term] id: UBERON:0005908 @@ -24383,8 +24382,8 @@ synonym: "conjunctiva serous sac" EXACT [] synonym: "subbrillar sac" NARROW [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005906 ! serous sac -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0035639 ! ocular adnexa +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0035639 ! part of ocular adnexa [Term] id: UBERON:0005911 @@ -24395,15 +24394,15 @@ synonym: "endoepithelium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000483 ! epithelium -intersection_of: RO:0002202 UBERON:0000925 ! endoderm +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0005913 name: zone of bone organ synonym: "bone organ zone" EXACT [] is_a: UBERON:0034944 ! zone of organ -relationship: BFO:0000050 UBERON:0001474 ! bone element -relationship: BFO:0000051 UBERON:0002481 ! bone tissue +relationship: BFO:0000050 UBERON:0001474 ! part of bone element +relationship: BFO:0000051 UBERON:0002481 ! has part bone tissue [Term] id: UBERON:0005932 @@ -24415,7 +24414,7 @@ synonym: "hair follicle bulb" EXACT [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002073 ! hair follicle +relationship: BFO:0000050 UBERON:0002073 ! part of hair follicle [Term] id: UBERON:0005933 @@ -24424,7 +24423,7 @@ def: "." [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0005932 ! bulb of hair follicle +relationship: BFO:0000050 UBERON:0005932 ! part of bulb of hair follicle [Term] id: UBERON:0005941 @@ -24455,8 +24454,8 @@ name: axial skeleton plus cranial skeleton def: "Subdivision of skeleton which consists of cranial skeleton, set of all vertebrae, set of all ribs and sternum[FMA, modified]." [] synonym: "skeleton axiale" RELATED [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0011137 ! axial skeletal system -relationship: RO:0002202 UBERON:0003089 ! sclerotome +relationship: BFO:0000050 UBERON:0011137 ! part of axial skeletal system +relationship: RO:0002202 UBERON:0003089 ! develops_from sclerotome [Term] id: UBERON:0005946 @@ -24465,8 +24464,8 @@ def: "An outflow tract that is part of a cardiac atrium." [] synonym: "outflow part of atrium" EXACT [] is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract -intersection_of: BFO:0000050 UBERON:0002081 ! cardiac atrium -relationship: BFO:0000050 UBERON:0002081 ! cardiac atrium +intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium +relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium [Term] id: UBERON:0005953 @@ -24486,9 +24485,9 @@ synonym: "right ventricular outflow tract" EXACT [] synonym: "RVOT" EXACT [] is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle -intersection_of: BFO:0000050 UBERON:0002080 ! heart right ventricle -relationship: BFO:0000050 UBERON:0002080 ! heart right ventricle -relationship: RO:0002202 UBERON:0009889 ! secondary heart field +intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle +relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle +relationship: RO:0002202 UBERON:0009889 ! develops_from secondary heart field [Term] id: UBERON:0005956 @@ -24504,8 +24503,8 @@ synonym: "Sibson vestibule" EXACT [] synonym: "vestibulum aortae" EXACT [] is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle -intersection_of: BFO:0000050 UBERON:0002084 ! heart left ventricle -relationship: BFO:0000050 UBERON:0002084 ! heart left ventricle +intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle +relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0005969 @@ -24532,7 +24531,7 @@ synonym: "trabecular meshwork" RELATED [] synonym: "trabecular meshwork of the eye" EXACT [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0003956 ! aqueous drainage system +relationship: BFO:0000050 UBERON:0003956 ! part of aqueous drainage system [Term] id: UBERON:0005971 @@ -24540,7 +24539,7 @@ name: amniotic fold def: "A sheet of somatopleure that grows upward over the embryo and eventually meets in the midline enclosing the embryo, eventually giving rise to the amnion and chorion[Kardong]." [] synonym: "amnionic fold" EXACT [] is_a: UBERON:0000478 ! extraembryonic structure -relationship: RO:0002202 UBERON:0004874 ! somatopleure +relationship: RO:0002202 UBERON:0004874 ! develops_from somatopleure [Term] id: UBERON:0005983 @@ -24549,8 +24548,8 @@ def: "The laminar structure of the heart" [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0005985 @@ -24559,8 +24558,8 @@ def: "Any of the arteries or veins that supply blood to the heart or return bloo is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000055 ! vessel -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0005986 @@ -24577,8 +24576,8 @@ synonym: "left posterior bundle" EXACT [] is_a: UBERON:0010131 ! conducting tissue of heart is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle -relationship: BFO:0000050 UBERON:0002350 ! conducting system of heart -relationship: BFO:0000050 UBERON:0002353 ! atrioventricular bundle +relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart +relationship: BFO:0000050 UBERON:0002353 ! part of atrioventricular bundle [Term] id: UBERON:0005987 @@ -24594,8 +24593,8 @@ synonym: "right ventricular bundle" EXACT [] is_a: UBERON:0010131 ! conducting tissue of heart is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle -relationship: BFO:0000050 UBERON:0002350 ! conducting system of heart -relationship: BFO:0000050 UBERON:0002353 ! atrioventricular bundle +relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart +relationship: BFO:0000050 UBERON:0002353 ! part of atrioventricular bundle [Term] id: UBERON:0006003 @@ -24607,7 +24606,7 @@ synonym: "skin adnexa" RELATED [] synonym: "skin adnexal structure" RELATED [] synonym: "skin appendage" RELATED [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0002416 ! integumental system +relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0006004 @@ -24618,7 +24617,7 @@ synonym: "lower part of bulb of hair follicle" EXACT [] synonym: "lower zone of bulb of hair follicle" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019204 ! skin epithelium -relationship: BFO:0000050 UBERON:0005932 ! bulb of hair follicle +relationship: BFO:0000050 UBERON:0005932 ! part of bulb of hair follicle [Term] id: UBERON:0006008 @@ -24636,15 +24635,15 @@ is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006444 ! annulus fibrosus intersection_of: UBERON:0006444 ! annulus fibrosus -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0006058 name: multi-limb segment region def: "A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions)." [] is_a: UBERON:0010758 ! subdivision of organism along appendicular axis -relationship: BFO:0000051 UBERON:0002529 ! limb segment +relationship: BFO:0000051 UBERON:0002529 ! has part limb segment [Term] id: UBERON:0006082 @@ -24659,9 +24658,9 @@ synonym: "urinary bladder fundus" EXACT [] synonym: "urinary bladder fundus region" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: RO:0002202 UBERON:0005760 ! urorectal septum -relationship: RO:0002202 UBERON:0009845 ! urogenital sinus mesenchyme +relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: RO:0002202 UBERON:0005760 ! develops_from urorectal septum +relationship: RO:0002202 UBERON:0009845 ! develops_from urogenital sinus mesenchyme [Term] id: UBERON:0006098 @@ -24675,7 +24674,7 @@ synonym: "corpus striatum (Savel'ev)" RELATED [] synonym: "ganglia basales" RELATED [] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019264 ! gray matter of forebrain -relationship: BFO:0000050 UBERON:0002743 ! basal forebrain +relationship: BFO:0000050 UBERON:0002743 ! part of basal forebrain [Term] id: UBERON:0006127 @@ -24685,8 +24684,8 @@ synonym: "spinal cord funiculus" EXACT [] synonym: "white column of spinal cord" EXACT [] is_a: UBERON:0006133 ! funiculus of neuraxis intersection_of: UBERON:0006133 ! funiculus of neuraxis -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002318 ! white matter of spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002318 ! part of white matter of spinal cord [Term] id: UBERON:0006133 @@ -24694,7 +24693,7 @@ name: funiculus of neuraxis def: "The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans" [] is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0011215 ! central nervous system cell part cluster -relationship: BFO:0000050 UBERON:0002316 ! white matter +relationship: BFO:0000050 UBERON:0002316 ! part of white matter [Term] id: UBERON:0006134 @@ -24708,7 +24707,7 @@ synonym: "neurofibrum" EXACT [] is_a: UBERON:0005162 ! multi cell part structure union_of: UBERON:0006135 ! myelinated nerve fiber union_of: UBERON:0006136 ! unmyelinated nerve fiber -relationship: BFO:0000050 UBERON:0001019 ! nerve fasciculus +relationship: BFO:0000050 UBERON:0001019 ! part of nerve fasciculus [Term] id: UBERON:0006135 @@ -24730,8 +24729,8 @@ synonym: "pronephros proximal tubule" EXACT [] is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0005310 ! pronephric nephron tubule intersection_of: UBERON:0004134 ! proximal tubule -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0005309 ! pronephric nephron +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron [Term] id: UBERON:0006175 @@ -24739,8 +24738,8 @@ name: pronephric distal tubule is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0005310 ! pronephric nephron tubule intersection_of: UBERON:0004135 ! distal tubule -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0005309 ! pronephric nephron +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron [Term] id: UBERON:0006182 @@ -24748,8 +24747,8 @@ name: mesonephric glomerular mesangium def: "The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus" [] is_a: UBERON:0002320 ! glomerular mesangium intersection_of: UBERON:0002320 ! glomerular mesangium -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005326 ! mesonephric glomerulus vasculature +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005326 ! part of mesonephric glomerulus vasculature [Term] id: UBERON:0006183 @@ -24757,9 +24756,9 @@ name: mesonephric glomerular capillary def: "." [] is_a: UBERON:0004212 ! glomerular capillary intersection_of: UBERON:0004212 ! glomerular capillary -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron -relationship: BFO:0000050 UBERON:0005325 ! mesonephric glomerulus +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron +relationship: BFO:0000050 UBERON:0005325 ! part of mesonephric glomerulus [Term] id: UBERON:0006189 @@ -24769,8 +24768,8 @@ is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0005097 ! renal connecting tubule is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0005097 ! renal connecting tubule -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0006190 @@ -24780,8 +24779,8 @@ is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0004135 ! distal tubule -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0006192 @@ -24791,8 +24790,8 @@ is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0004134 ! proximal tubule -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0005322 ! mesonephric nephron +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0006206 @@ -24800,7 +24799,7 @@ name: iridocorneal angle def: "Acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]." [] synonym: "anterior chamber angle" EXACT [] is_a: UBERON:0000015 ! non-material anatomical boundary -relationship: BFO:0000050 UBERON:0003956 ! aqueous drainage system +relationship: BFO:0000050 UBERON:0003956 ! part of aqueous drainage system [Term] id: UBERON:0006208 @@ -24811,8 +24810,8 @@ synonym: "auditory tubercles" RELATED [] synonym: "auricular hillock" RELATED [] synonym: "hillock of Hiss" RELATED [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0001691 ! external ear +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0001691 ! part of external ear [Term] id: UBERON:0006211 @@ -24823,8 +24822,8 @@ synonym: "oral plate" RELATED [] synonym: "oropharyngeal membrane" RELATED [] synonym: "pharyngeal membrane" RELATED [] is_a: UBERON:0003037 ! septum -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0006264 ! mouth-foregut junction +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0006264 ! part of mouth-foregut junction [Term] id: UBERON:0006215 @@ -24839,8 +24838,8 @@ synonym: "presumptive cerebellum" RELATED [] synonym: "rostral rhombic lip" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0010092 ! future metencephalon +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0010092 ! part of future metencephalon [Term] id: UBERON:0006222 @@ -24848,15 +24847,15 @@ name: future diencephalon def: "The foremost region of the future forebrain that develops into the diencephalon." [] synonym: "presumptive diencephalon" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0006240 ! future forebrain +relationship: BFO:0000050 UBERON:0006240 ! part of future forebrain [Term] id: UBERON:0006232 name: facio-acoustic VII-VIII preganglion complex synonym: "facio-acoustic preganglion complex" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0001714 ! cranial ganglion -relationship: RO:0002202 UBERON:0005565 ! facio-acoustic neural crest +relationship: BFO:0000050 UBERON:0001714 ! part of cranial ganglion +relationship: RO:0002202 UBERON:0005565 ! develops_from facio-acoustic neural crest [Term] id: UBERON:0006233 @@ -24865,8 +24864,8 @@ def: "A differentiated genital tubercle that is part of a female reproductive sy synonym: "genital tubercle of female" EXACT [] is_a: UBERON:0011757 ! differentiated genital tubercle intersection_of: UBERON:0011757 ! differentiated genital tubercle -intersection_of: BFO:0000050 UBERON:0000474 ! female reproductive system -relationship: BFO:0000050 UBERON:0005056 ! external female genitalia +intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system +relationship: BFO:0000050 UBERON:0005056 ! part of external female genitalia [Term] id: UBERON:0006234 @@ -24883,7 +24882,7 @@ id: UBERON:0006235 name: foregut-midgut junction def: "An anatomical junctions that overlaps the foregut and midgut." [] is_a: UBERON:0007651 ! anatomical junction -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0006238 @@ -24894,7 +24893,7 @@ synonym: "embryonic brain" RELATED [] synonym: "encephalon" NARROW [] synonym: "presumptive brain" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0002346 ! neurectoderm +relationship: BFO:0000050 UBERON:0002346 ! part of neurectoderm [Term] id: UBERON:0006240 @@ -24905,7 +24904,7 @@ synonym: "presumptive forebrain" EXACT [] synonym: "presumptive prosencephalon" EXACT [] synonym: "prosencephalon" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0006238 ! future brain +relationship: BFO:0000050 UBERON:0006238 ! part of future brain [Term] id: UBERON:0006241 @@ -24915,7 +24914,7 @@ synonym: "presumptive spinal cord neural keel" EXACT [] synonym: "presumptive spinal cord neural plate" EXACT [] synonym: "presumptive spinal cord neural rod" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0001017 ! central nervous system +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0006242 @@ -24923,9 +24922,9 @@ name: gall bladder primordium def: "A sac-like cavity ventral to the liver, lying in the sub-mesodermal space and closed by a thin sheet of ectodermal cells, from which the future gall bladder develops." [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0001173 ! biliary tree -relationship: BFO:0000050 UBERON:0004912 ! biliary bud -relationship: RO:0002202 UBERON:0001152 ! cystic duct +relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree +relationship: BFO:0000050 UBERON:0004912 ! part of biliary bud +relationship: RO:0002202 UBERON:0001152 ! develops_from cystic duct [Term] id: UBERON:0006245 @@ -24936,9 +24935,9 @@ is_a: UBERON:0005258 ! upper arm mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0015053 ! humerus endochondral element -relationship: BFO:0000050 UBERON:0001440 ! forelimb skeleton -relationship: BFO:0000050 UBERON:0005258 ! upper arm mesenchyme -relationship: RO:0002202 UBERON:0006246 ! humerus pre-cartilage condensation +relationship: BFO:0000050 UBERON:0001440 ! part of forelimb skeleton +relationship: BFO:0000050 UBERON:0005258 ! part of upper arm mesenchyme +relationship: RO:0002202 UBERON:0006246 ! develops_from humerus pre-cartilage condensation [Term] id: UBERON:0006246 @@ -24949,15 +24948,15 @@ is_a: UBERON:0005258 ! upper arm mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015053 ! humerus endochondral element -relationship: BFO:0000050 UBERON:0001440 ! forelimb skeleton -relationship: BFO:0000050 UBERON:0005258 ! upper arm mesenchyme +relationship: BFO:0000050 UBERON:0001440 ! part of forelimb skeleton +relationship: BFO:0000050 UBERON:0005258 ! part of upper arm mesenchyme [Term] id: UBERON:0006256 name: knee joint primordium is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0003321 ! mesenchyme of knee +relationship: BFO:0000050 UBERON:0003321 ! part of mesenchyme of knee [Term] id: UBERON:0006261 @@ -24967,15 +24966,15 @@ synonym: "genital tubercle of male" EXACT [] synonym: "penis anlage" RELATED [] is_a: UBERON:0011757 ! differentiated genital tubercle intersection_of: UBERON:0011757 ! differentiated genital tubercle -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system -relationship: BFO:0000050 UBERON:0004053 ! external male genitalia +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system +relationship: BFO:0000050 UBERON:0004053 ! part of external male genitalia [Term] id: UBERON:0006264 name: mouth-foregut junction def: "An anatomical junctions that overlaps the mouth and foregut." [] is_a: UBERON:0007651 ! anatomical junction -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0006266 @@ -24987,9 +24986,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019306 ! nose epithelium -relationship: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm -relationship: RO:0002202 UBERON:0012313 ! 1st arch maxillary ectoderm +relationship: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm +relationship: RO:0002202 UBERON:0012313 ! develops_from 1st arch maxillary ectoderm [Term] id: UBERON:0006267 @@ -24999,7 +24998,7 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium -relationship: RO:0002202 UBERON:0006268 ! notochordal process +relationship: RO:0002202 UBERON:0006268 ! develops_from notochordal process [Term] id: UBERON:0006268 @@ -25008,7 +25007,7 @@ def: "A midline cellular cord formed from the migration of mesenchymal cells fro synonym: "chordamesoderm" RELATED [] synonym: "presumptive notochord" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: RO:0002202 UBERON:0000924 ! ectoderm +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0006273 @@ -25016,7 +25015,7 @@ name: otic pit def: "the pair of depressions of thickened otic placode epithelium, that further develops into the otic vesicles" [] synonym: "otic cup" EXACT [] is_a: UBERON:0016566 ! pit -relationship: BFO:0000050 UBERON:0003069 ! otic placode +relationship: BFO:0000050 UBERON:0003069 ! part of otic placode [Term] id: UBERON:0006283 @@ -25032,8 +25031,8 @@ synonym: "primitive ventricle of heart" EXACT [] synonym: "primordial cardiac ventricle" EXACT [] synonym: "primordial ventricle" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0004141 ! heart tube -relationship: BFO:0000050 UBERON:0005498 ! primitive heart tube +relationship: BFO:0000050 UBERON:0004141 ! part of heart tube +relationship: BFO:0000050 UBERON:0005498 ! part of primitive heart tube [Term] id: UBERON:0006284 @@ -25045,14 +25044,14 @@ synonym: "preevaginated forebrain vesicle" NARROW [] synonym: "prosencephalic ventricle" RELATED [] synonym: "prosencephalic vesicle" EXACT [] is_a: UBERON:0013150 ! future brain vesicle -relationship: BFO:0000050 UBERON:0006240 ! future forebrain +relationship: BFO:0000050 UBERON:0006240 ! part of future forebrain [Term] id: UBERON:0006292 name: shoulder joint primordium is_a: UBERON:0003322 ! mesenchyme of shoulder is_a: UBERON:0005856 ! developing mesenchymal condensation -relationship: RO:0002202 UBERON:0003322 ! mesenchyme of shoulder +relationship: RO:0002202 UBERON:0003322 ! develops_from mesenchyme of shoulder [Term] id: UBERON:0006293 @@ -25067,8 +25066,8 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0005602 ! dorsal mesogastrium -relationship: RO:0002202 UBERON:0004872 ! splanchnic layer of lateral plate mesoderm +relationship: BFO:0000050 UBERON:0005602 ! part of dorsal mesogastrium +relationship: RO:0002202 UBERON:0004872 ! develops_from splanchnic layer of lateral plate mesoderm [Term] id: UBERON:0006311 @@ -25079,7 +25078,7 @@ synonym: "eye chamber" EXACT [] synonym: "eyeball chamber" EXACT [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0006314 @@ -25096,8 +25095,8 @@ def: "A nucleus of brain that is part of a brainstem." [] synonym: "brain stem nucleus" RELATED [] is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0002298 ! brainstem -relationship: BFO:0000050 UBERON:0002298 ! brainstem +intersection_of: BFO:0000050 UBERON:0002298 ! part of brainstem +relationship: BFO:0000050 UBERON:0002298 ! part of brainstem [Term] id: UBERON:0006334 @@ -25114,8 +25113,8 @@ def: "A choroid plexus stroma that is part of a lateral ventricle." [] is_a: UBERON:0005206 ! choroid plexus stroma is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005206 ! choroid plexus stroma -intersection_of: BFO:0000050 UBERON:0002285 ! telencephalic ventricle -relationship: BFO:0000050 UBERON:0002307 ! choroid plexus of lateral ventricle +intersection_of: BFO:0000050 UBERON:0002285 ! part of telencephalic ventricle +relationship: BFO:0000050 UBERON:0002307 ! part of choroid plexus of lateral ventricle [Term] id: UBERON:0006340 @@ -25124,8 +25123,8 @@ def: "A choroid plexus stroma that is part of a fourth ventricle." [] is_a: UBERON:0005206 ! choroid plexus stroma is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005206 ! choroid plexus stroma -intersection_of: BFO:0000050 UBERON:0002422 ! fourth ventricle -relationship: BFO:0000050 UBERON:0002290 ! choroid plexus of fourth ventricle +intersection_of: BFO:0000050 UBERON:0002422 ! part of fourth ventricle +relationship: BFO:0000050 UBERON:0002290 ! part of choroid plexus of fourth ventricle [Term] id: UBERON:0006341 @@ -25134,8 +25133,8 @@ def: "A peritubular capillary that is part of a outer medulla of kidney." [] synonym: "kidney outer medulla peritubular capillary" EXACT [] is_a: UBERON:0005272 ! peritubular capillary intersection_of: UBERON:0005272 ! peritubular capillary -intersection_of: BFO:0000050 UBERON:0001293 ! outer medulla of kidney -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney +intersection_of: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney [Term] id: UBERON:0006376 @@ -25147,9 +25146,9 @@ synonym: "medullary thick ascending limb of Henle's loop" EXACT [] synonym: "renal medulla loop of Henle ascending limb thick segment" EXACT [] synonym: "renal medulla thick ascending limb" EXACT [] is_a: UBERON:0007685 ! region of nephron tubule -relationship: BFO:0000050 UBERON:0001291 ! thick ascending limb of loop of Henle -relationship: BFO:0000050 UBERON:0006541 ! outer medulla inner stripe loop of Henle -relationship: BFO:0000050 UBERON:0006542 ! outer medulla outer stripe loop of Henle +relationship: BFO:0000050 UBERON:0001291 ! part of thick ascending limb of loop of Henle +relationship: BFO:0000050 UBERON:0006541 ! part of outer medulla inner stripe loop of Henle +relationship: BFO:0000050 UBERON:0006542 ! part of outer medulla outer stripe loop of Henle [Term] id: UBERON:0006435 @@ -25162,8 +25161,8 @@ synonym: "penis bone" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007719 ! bone of reproductive organ intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0000989 ! penis -relationship: BFO:0000050 UBERON:0000989 ! penis +intersection_of: BFO:0000050 UBERON:0000989 ! part of penis +relationship: BFO:0000050 UBERON:0000989 ! part of penis [Term] id: UBERON:0006444 @@ -25183,23 +25182,23 @@ synonym: "bronchoalveolar system" RELATED [] synonym: "pulmonary alveolar system" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0002048 ! lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0006525 name: left lung alveolar system is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0002168 ! left lung -relationship: BFO:0000050 UBERON:0006524 ! alveolar system +relationship: BFO:0000050 UBERON:0002168 ! part of left lung +relationship: BFO:0000050 UBERON:0006524 ! part of alveolar system [Term] id: UBERON:0006526 name: right lung alveolar system is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0002167 ! right lung -relationship: BFO:0000050 UBERON:0006524 ! alveolar system +relationship: BFO:0000050 UBERON:0002167 ! part of right lung +relationship: BFO:0000050 UBERON:0006524 ! part of alveolar system [Term] id: UBERON:0006534 @@ -25215,8 +25214,8 @@ name: outer medulla inner stripe loop of Henle def: "A loop of Henle that is part of a kidney outer medulla inner stripe." [] is_a: UBERON:0034996 ! outer renal medulla loop of Henle intersection_of: UBERON:0001288 ! loop of Henle -intersection_of: BFO:0000050 UBERON:0004201 ! kidney outer medulla inner stripe -relationship: BFO:0000050 UBERON:0004201 ! kidney outer medulla inner stripe +intersection_of: BFO:0000050 UBERON:0004201 ! part of kidney outer medulla inner stripe +relationship: BFO:0000050 UBERON:0004201 ! part of kidney outer medulla inner stripe [Term] id: UBERON:0006542 @@ -25224,8 +25223,8 @@ name: outer medulla outer stripe loop of Henle def: "A loop of Henle that is part of a kidney outer medulla outer stripe." [] is_a: UBERON:0034996 ! outer renal medulla loop of Henle intersection_of: UBERON:0001288 ! loop of Henle -intersection_of: BFO:0000050 UBERON:0004202 ! kidney outer medulla outer stripe -relationship: BFO:0000050 UBERON:0004202 ! kidney outer medulla outer stripe +intersection_of: BFO:0000050 UBERON:0004202 ! part of kidney outer medulla outer stripe +relationship: BFO:0000050 UBERON:0004202 ! part of kidney outer medulla outer stripe [Term] id: UBERON:0006544 @@ -25234,8 +25233,8 @@ def: "A vasculature that is part of a kidney." [] is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0006553 @@ -25243,8 +25242,8 @@ name: renal duct def: "A tube in the kidney that collect and transport urine." [] is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0006555 @@ -25252,8 +25251,8 @@ name: excretory tube def: "A tube that is part of a excretory system." [] is_a: UBERON:0000025 ! tube intersection_of: UBERON:0000025 ! tube -intersection_of: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000050 UBERON:0001008 ! renal system +intersection_of: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000050 UBERON:0001008 ! part of renal system [Term] id: UBERON:0006558 @@ -25263,8 +25262,8 @@ synonym: "lymphatic system" EXACT [] synonym: "lymphatic tree system" EXACT [] synonym: "lymporeticular system" RELATED [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0001009 ! circulatory system -relationship: BFO:0000050 UBERON:0002465 ! lymphoid system +relationship: BFO:0000050 UBERON:0001009 ! part of circulatory system +relationship: BFO:0000050 UBERON:0002465 ! part of lymphoid system [Term] id: UBERON:0006561 @@ -25272,7 +25271,7 @@ name: non-lymphatic part of lymphoid system def: "An organ system subdivision that is the part of the lymphoid system that excludes the lymphatic vessels.." [] synonym: "non-lymphatic lymphoid system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0002465 ! lymphoid system +relationship: BFO:0000050 UBERON:0002465 ! part of lymphoid system [Term] id: UBERON:0006562 @@ -25290,8 +25289,8 @@ synonym: "left ventricular myocardium" EXACT [] synonym: "myocardium of left ventricle" EXACT [] is_a: UBERON:0001083 ! myocardium of ventricle intersection_of: UBERON:0001083 ! myocardium of ventricle -intersection_of: BFO:0000050 UBERON:0002084 ! heart left ventricle -relationship: BFO:0000050 UBERON:0002084 ! heart left ventricle +intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle +relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0006567 @@ -25301,8 +25300,8 @@ synonym: "myocardium of right ventricle" EXACT [] synonym: "right ventricular myocardium" EXACT [] is_a: UBERON:0001083 ! myocardium of ventricle intersection_of: UBERON:0001083 ! myocardium of ventricle -intersection_of: BFO:0000050 UBERON:0002080 ! heart right ventricle -relationship: BFO:0000050 UBERON:0002080 ! heart right ventricle +intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle +relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle [Term] id: UBERON:0006568 @@ -25311,8 +25310,8 @@ def: "A nucleus of brain that is part of a hypothalamus." [] synonym: "nucleus of hypothalamus" EXACT [] is_a: UBERON:0006569 ! diencephalic nucleus intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0001898 ! hypothalamus -relationship: BFO:0000050 UBERON:0001898 ! hypothalamus +intersection_of: BFO:0000050 UBERON:0001898 ! part of hypothalamus +relationship: BFO:0000050 UBERON:0001898 ! part of hypothalamus [Term] id: UBERON:0006569 @@ -25320,8 +25319,8 @@ name: diencephalic nucleus def: "A nucleus of brain that is part of a diencephalon." [] is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0006585 @@ -25330,16 +25329,16 @@ def: "An organ that is part of a vestibular system." [] synonym: "balance organ" EXACT [] is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0004681 ! vestibular system -relationship: BFO:0000050 UBERON:0000012 ! somatic nervous system -relationship: BFO:0000050 UBERON:0004681 ! vestibular system +intersection_of: BFO:0000050 UBERON:0004681 ! part of vestibular system +relationship: BFO:0000050 UBERON:0000012 ! part of somatic nervous system +relationship: BFO:0000050 UBERON:0004681 ! part of vestibular system [Term] id: UBERON:0006595 name: presumptive endoderm def: "Presumptive structure of the blastula that will develop into endoderm." [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0000307 ! blastula +relationship: BFO:0000050 UBERON:0000307 ! part of blastula [Term] id: UBERON:0006596 @@ -25361,14 +25360,14 @@ name: presumptive ectoderm def: "Presumptive structure of the blastula that will develop into ectoderm." [] synonym: "presumptive epidermis" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0000307 ! blastula +relationship: BFO:0000050 UBERON:0000307 ! part of blastula [Term] id: UBERON:0006603 name: presumptive mesoderm def: "Presumptive structure of the blastula that will develop into mesoderm." [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0000307 ! blastula +relationship: BFO:0000050 UBERON:0000307 ! part of blastula [Term] id: UBERON:0006614 @@ -25377,7 +25376,7 @@ def: "A sheet of extracellular matrix." [] synonym: "aponeuroses" RELATED [] synonym: "aponeurotic" RELATED [] is_a: UBERON:0000158 ! membranous layer -relationship: BFO:0000050 UBERON:0001630 ! muscle organ +relationship: BFO:0000050 UBERON:0001630 ! part of muscle organ [Term] id: UBERON:0006615 @@ -25403,8 +25402,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0003889 ! fallopian tube -relationship: BFO:0000050 UBERON:0003889 ! fallopian tube +intersection_of: BFO:0000050 UBERON:0003889 ! part of fallopian tube +relationship: BFO:0000050 UBERON:0003889 ! part of fallopian tube [Term] id: UBERON:0006645 @@ -25415,8 +25414,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia -intersection_of: BFO:0000050 UBERON:0001301 ! epididymis -relationship: BFO:0000050 UBERON:0001301 ! epididymis +intersection_of: BFO:0000050 UBERON:0001301 ! part of epididymis +relationship: BFO:0000050 UBERON:0001301 ! part of epididymis [Term] id: UBERON:0006646 @@ -25426,8 +25425,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001301 ! epididymis -relationship: BFO:0000050 UBERON:0001301 ! epididymis +intersection_of: BFO:0000050 UBERON:0001301 ! part of epididymis +relationship: BFO:0000050 UBERON:0001301 ! part of epididymis [Term] id: UBERON:0006648 @@ -25441,8 +25440,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia -intersection_of: BFO:0000050 UBERON:0000998 ! seminal vesicle -relationship: BFO:0000050 UBERON:0000998 ! seminal vesicle +intersection_of: BFO:0000050 UBERON:0000998 ! part of seminal vesicle +relationship: BFO:0000050 UBERON:0000998 ! part of seminal vesicle [Term] id: UBERON:0006652 @@ -25454,8 +25453,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0006660 @@ -25489,7 +25488,7 @@ synonym: "galea aponeurotica" EXACT [] synonym: "galea aponeurotica; aponeurosis epicranialis" RELATED [] synonym: "galeal aponeurosis" RELATED [] is_a: UBERON:0006614 ! aponeurosis -relationship: BFO:0000050 UBERON:0000403 ! scalp +relationship: BFO:0000050 UBERON:0000403 ! part of scalp [Term] id: UBERON:0006686 @@ -25499,8 +25498,8 @@ synonym: "spinal branch" RELATED [] synonym: "vena spinalis" EXACT [] is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0001130 ! vertebral column -relationship: BFO:0000050 UBERON:0001130 ! vertebral column +intersection_of: BFO:0000050 UBERON:0001130 ! part of vertebral column +relationship: BFO:0000050 UBERON:0001130 ! part of vertebral column [Term] id: UBERON:0006694 @@ -25508,8 +25507,8 @@ name: cerebellum vasculature def: "A vasculature that is part of a cerebellum." [] is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002037 ! cerebellum -relationship: BFO:0000050 UBERON:0002037 ! cerebellum +intersection_of: BFO:0000050 UBERON:0002037 ! part of cerebellum +relationship: BFO:0000050 UBERON:0002037 ! part of cerebellum [Term] id: UBERON:0006717 @@ -25522,8 +25521,8 @@ synonym: "skeletal parts of autopod" EXACT [] synonym: "skeleton of autopod" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision -relationship: BFO:0000050 UBERON:0002470 ! autopod region -relationship: BFO:0000050 UBERON:0004381 ! skeleton of limb +relationship: BFO:0000050 UBERON:0002470 ! part of autopod region +relationship: BFO:0000050 UBERON:0004381 ! part of skeleton of limb [Term] id: UBERON:0006725 @@ -25536,7 +25535,7 @@ synonym: "spiral ligament of cochlear duct" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001855 ! cochlear duct of membranous labyrinth +relationship: BFO:0000050 UBERON:0001855 ! part of cochlear duct of membranous labyrinth [Term] id: UBERON:0006763 @@ -25547,8 +25546,8 @@ synonym: "conjunctival epithelium" EXACT [] is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001811 ! conjunctiva -relationship: BFO:0000050 UBERON:0001811 ! conjunctiva +intersection_of: BFO:0000050 UBERON:0001811 ! part of conjunctiva +relationship: BFO:0000050 UBERON:0001811 ! part of conjunctiva [Term] id: UBERON:0006799 @@ -25564,9 +25563,9 @@ synonym: "skeleton of nose" EXACT [] is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0003113 ! dermatocranium -relationship: BFO:0000050 UBERON:0011156 ! facial skeleton +relationship: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0003113 ! part of dermatocranium +relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton [Term] id: UBERON:0006815 @@ -25576,7 +25575,7 @@ synonym: "areolar tissue" RELATED [] synonym: "loose areolar connective tissue" EXACT [] synonym: "loose connective tissue" RELATED [] is_a: UBERON:0011825 ! loose connective tissue -relationship: BFO:0000050 UBERON:0000030 ! lamina propria +relationship: BFO:0000050 UBERON:0000030 ! part of lamina propria [Term] id: UBERON:0006846 @@ -25592,8 +25591,8 @@ def: "A peritubular capillary that is part of a cortex of kidney." [] synonym: "kidney cortex peritubular capillary" EXACT [] is_a: UBERON:0005272 ! peritubular capillary intersection_of: UBERON:0005272 ! peritubular capillary -intersection_of: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +intersection_of: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0006853 @@ -25603,8 +25602,8 @@ synonym: "cortical tubule" RELATED [] synonym: "kidney cortex tubule" EXACT [] is_a: UBERON:0007685 ! region of nephron tubule intersection_of: UBERON:0007685 ! region of nephron tubule -intersection_of: BFO:0000050 UBERON:0001225 ! cortex of kidney -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +intersection_of: BFO:0000050 UBERON:0001225 ! part of cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0006854 @@ -25615,8 +25614,8 @@ synonym: "kidney cortex loop of Henle ascending limb thick segment" EXACT [] synonym: "renal cortex loop of Henle ascending limb thick segment" EXACT [] synonym: "renal cortex thick ascending limb" EXACT [] is_a: UBERON:0006853 ! renal cortex tubule -relationship: BFO:0000050 UBERON:0001291 ! thick ascending limb of loop of Henle -relationship: BFO:0000050 UBERON:0006853 ! renal cortex tubule +relationship: BFO:0000050 UBERON:0001291 ! part of thick ascending limb of loop of Henle +relationship: BFO:0000050 UBERON:0006853 ! part of renal cortex tubule [Term] id: UBERON:0006855 @@ -25631,8 +25630,8 @@ synonym: "ureteral smooth muscle layer" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0009916 ! wall of ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0006858 @@ -25645,8 +25644,8 @@ synonym: "suprarenal gland - interrenal gland" RELATED [] is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0010074 ! chromaffin system -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm +relationship: BFO:0000050 UBERON:0010074 ! part of chromaffin system +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm [Term] id: UBERON:0006862 @@ -25660,8 +25659,8 @@ synonym: "shaft of femur" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis -intersection_of: BFO:0000050 UBERON:0000981 ! femur -relationship: BFO:0000050 UBERON:0000981 ! femur +intersection_of: BFO:0000050 UBERON:0000981 ! part of femur +relationship: BFO:0000050 UBERON:0000981 ! part of femur [Term] id: UBERON:0006863 @@ -25670,8 +25669,8 @@ def: "A proximal metaphysis that is part of a femur." [] is_a: UBERON:0004378 ! proximal metaphysis is_a: UBERON:0006865 ! metaphysis of femur intersection_of: UBERON:0004378 ! proximal metaphysis -intersection_of: BFO:0000050 UBERON:0000981 ! femur -relationship: BFO:0000050 UBERON:0006862 ! diaphysis of femur +intersection_of: BFO:0000050 UBERON:0000981 ! part of femur +relationship: BFO:0000050 UBERON:0006862 ! part of diaphysis of femur [Term] id: UBERON:0006865 @@ -25681,8 +25680,8 @@ synonym: "femoral metaphysis" EXACT [] is_a: UBERON:0001438 ! metaphysis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis -intersection_of: BFO:0000050 UBERON:0000981 ! femur -relationship: BFO:0000050 UBERON:0006862 ! diaphysis of femur +intersection_of: BFO:0000050 UBERON:0000981 ! part of femur +relationship: BFO:0000050 UBERON:0006862 ! part of diaphysis of femur [Term] id: UBERON:0006866 @@ -25692,14 +25691,14 @@ synonym: "rectal part of digestive tract" RELATED [] synonym: "rectum" NARROW [] synonym: "terminal section of digestive tract" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract -relationship: RO:0002202 UBERON:0001046 ! hindgut +relationship: RO:0002202 UBERON:0001046 ! develops_from hindgut [Term] id: UBERON:0006868 name: seminal fluid secreting gland def: "A gland that secretes a seminal fluid." [] is_a: UBERON:0005399 ! male reproductive gland -relationship: BFO:0000050 UBERON:0006947 ! male genital duct +relationship: BFO:0000050 UBERON:0006947 ! part of male genital duct [Term] id: UBERON:0006871 @@ -25710,7 +25709,7 @@ synonym: "foot disk" RELATED [] synonym: "foot plate" EXACT [] synonym: "footplate" EXACT [] is_a: UBERON:0010130 ! embryonic autopod plate -relationship: RO:0002202 UBERON:0005418 ! hindlimb bud +relationship: RO:0002202 UBERON:0005418 ! develops_from hindlimb bud [Term] id: UBERON:0006872 @@ -25718,8 +25717,8 @@ name: handplate apical ectodermal ridge def: "An apical ectodermal ridge that is part of a handplate." [] is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge -intersection_of: BFO:0000050 UBERON:0006875 ! embryonic handplate -relationship: BFO:0000050 UBERON:0006875 ! embryonic handplate +intersection_of: BFO:0000050 UBERON:0006875 ! part of embryonic handplate +relationship: BFO:0000050 UBERON:0006875 ! part of embryonic handplate [Term] id: UBERON:0006875 @@ -25729,7 +25728,7 @@ synonym: "distal part of forelimb bud" RELATED [] synonym: "hand plate" EXACT [] synonym: "handplate" EXACT [] is_a: UBERON:0010130 ! embryonic autopod plate -relationship: RO:0002202 UBERON:0005417 ! forelimb bud +relationship: RO:0002202 UBERON:0005417 ! develops_from forelimb bud [Term] id: UBERON:0006876 @@ -25739,8 +25738,8 @@ synonym: "organ vasculature" EXACT [] synonym: "set of blood vessels of organ" EXACT [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000062 ! organ -relationship: BFO:0000050 UBERON:0000062 ! organ +intersection_of: BFO:0000050 UBERON:0000062 ! part of organ +relationship: BFO:0000050 UBERON:0000062 ! part of organ [Term] id: UBERON:0006877 @@ -25753,8 +25752,8 @@ synonym: "liver vascular system" RELATED [] is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0002107 ! liver +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0006904 @@ -25770,9 +25769,9 @@ synonym: "mesenchyme from head mesoderm" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0005253 ! head mesenchyme -intersection_of: RO:0002202 UBERON:0000926 ! mesoderm -relationship: RO:0002202 UBERON:0000926 ! mesoderm -relationship: RO:0002202 UBERON:0003063 ! prechordal plate +intersection_of: RO:0002202 UBERON:0000926 ! develops_from mesoderm +relationship: RO:0002202 UBERON:0000926 ! develops_from mesoderm +relationship: RO:0002202 UBERON:0003063 ! develops_from prechordal plate [Term] id: UBERON:0006905 @@ -25783,8 +25782,8 @@ synonym: "mesenchyme of mandibular prominence" EXACT [] is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005867 ! mandibular prominence -relationship: BFO:0000050 UBERON:0005867 ! mandibular prominence +intersection_of: BFO:0000050 UBERON:0005867 ! part of mandibular prominence +relationship: BFO:0000050 UBERON:0005867 ! part of mandibular prominence [Term] id: UBERON:0006914 @@ -25807,7 +25806,7 @@ def: "A non-keratinized stratified squamous epithelium that is part of a tongue. is_a: UBERON:0006919 ! tongue squamous epithelium is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium intersection_of: UBERON:0010304 ! non-keratinized stratified squamous epithelium -intersection_of: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0006919 @@ -25818,8 +25817,8 @@ is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0003357 ! epithelium of tongue is_a: UBERON:0006914 ! squamous epithelium intersection_of: UBERON:0006914 ! squamous epithelium -intersection_of: BFO:0000050 UBERON:0001723 ! tongue -relationship: BFO:0000050 UBERON:0005020 ! mucosa of tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: BFO:0000050 UBERON:0005020 ! part of mucosa of tongue [Term] id: UBERON:0006920 @@ -25831,7 +25830,7 @@ synonym: "squamous oesophageal epithelium" RELATED [] is_a: UBERON:0001976 ! epithelium of esophagus is_a: UBERON:0006914 ! squamous epithelium intersection_of: UBERON:0006914 ! squamous epithelium -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0006921 @@ -25840,7 +25839,7 @@ def: "A squamous epithelium that is part of a stomach." [] is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0001276 ! epithelium of stomach intersection_of: UBERON:0006914 ! squamous epithelium -intersection_of: BFO:0000050 UBERON:0000945 ! stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach [Term] id: UBERON:0006922 @@ -25850,7 +25849,7 @@ synonym: "cervical squamous epithelium" EXACT [] is_a: UBERON:0004801 ! cervix epithelium is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium intersection_of: UBERON:0006914 ! squamous epithelium -intersection_of: BFO:0000050 UBERON:0000002 ! uterine cervix +intersection_of: BFO:0000050 UBERON:0000002 ! part of uterine cervix [Term] id: UBERON:0006923 @@ -25860,7 +25859,7 @@ synonym: "vaginal squamous epithelium" EXACT [] is_a: UBERON:0001344 ! epithelium of vagina is_a: UBERON:0006915 ! stratified squamous epithelium intersection_of: UBERON:0006914 ! squamous epithelium -intersection_of: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0006924 @@ -25871,9 +25870,9 @@ synonym: "gastric gland epithelium" RELATED [] is_a: UBERON:0001276 ! epithelium of stomach is_a: UBERON:0006929 ! glandular columnar epithelium intersection_of: UBERON:0006799 ! glandular epithelium -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0006931 ! stomach glandular region mucosa -relationship: BFO:0000051 UBERON:0000325 ! gastric gland +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0006931 ! part of stomach glandular region mucosa +relationship: BFO:0000051 UBERON:0000325 ! has part gastric gland [Term] id: UBERON:0006925 @@ -25883,7 +25882,7 @@ synonym: "digestive gland" RELATED [] is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0002368 ! endocrine gland -intersection_of: BFO:0000050 UBERON:0001007 ! digestive system +intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0006929 @@ -25899,8 +25898,8 @@ def: "stomach mucosa that is lined with glandular epithelium and part of a stoma synonym: "stomach glandular region glandular mucous membrane" EXACT [] is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0001199 ! mucosa of stomach -intersection_of: BFO:0000050 UBERON:0011953 ! stomach glandular region -relationship: BFO:0000050 UBERON:0011953 ! stomach glandular region +intersection_of: BFO:0000050 UBERON:0011953 ! part of stomach glandular region +relationship: BFO:0000050 UBERON:0011953 ! part of stomach glandular region [Term] id: UBERON:0006932 @@ -25912,8 +25911,8 @@ synonym: "vestibular sensory epithelium" EXACT [] is_a: UBERON:0006934 ! sensory epithelium is_a: UBERON:0006937 ! inner ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001862 ! vestibular labyrinth -relationship: BFO:0000050 UBERON:0001862 ! vestibular labyrinth +intersection_of: BFO:0000050 UBERON:0001862 ! part of vestibular labyrinth +relationship: BFO:0000050 UBERON:0001862 ! part of vestibular labyrinth [Term] id: UBERON:0006934 @@ -25921,7 +25920,7 @@ name: sensory epithelium def: "Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue." [] synonym: "neuroepithelium" RELATED [] is_a: UBERON:0000488 ! atypical epithelium -relationship: BFO:0000050 UBERON:0000010 ! peripheral nervous system +relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0006935 @@ -25931,8 +25930,8 @@ synonym: "ampullary crest neuroepithelium" RELATED [] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [] is_a: UBERON:0006932 ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0004721 ! crista ampullaris -relationship: BFO:0000050 UBERON:0004721 ! crista ampullaris +intersection_of: BFO:0000050 UBERON:0004721 ! part of crista ampullaris +relationship: BFO:0000050 UBERON:0004721 ! part of crista ampullaris [Term] id: UBERON:0006937 @@ -25942,8 +25941,8 @@ is_a: UBERON:0010314 ! structure with developmental contribution from neural cre is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001846 ! internal ear -relationship: BFO:0000050 UBERON:0001846 ! internal ear +intersection_of: BFO:0000050 UBERON:0001846 ! part of internal ear +relationship: BFO:0000050 UBERON:0001846 ! part of internal ear [Term] id: UBERON:0006938 @@ -25952,8 +25951,8 @@ def: "An epithelium that is part of a pinna." [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015814 ! outer ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001757 ! pinna -relationship: BFO:0000050 UBERON:0001757 ! pinna +intersection_of: BFO:0000050 UBERON:0001757 ! part of pinna +relationship: BFO:0000050 UBERON:0001757 ! part of pinna [Term] id: UBERON:0006947 @@ -25963,7 +25962,7 @@ synonym: "sperm duct" EXACT [] synonym: "sperm ducts" EXACT [] is_a: UBERON:0005904 ! duct of male reproductive system is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0004054 ! internal male genitalia +relationship: BFO:0000050 UBERON:0004054 ! part of internal male genitalia [Term] id: UBERON:0006955 @@ -25972,8 +25971,8 @@ def: "An epithelium that is part of a uterus." [] synonym: "uterus epithelium" RELATED [] is_a: UBERON:0004804 ! oviduct epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0000995 ! uterus +intersection_of: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0000995 ! part of uterus [Term] id: UBERON:0006960 @@ -25988,8 +25987,8 @@ synonym: "stroma ovarii" RELATED [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000050 UBERON:0000992 ! ovary +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000050 UBERON:0000992 ! part of ovary [Term] id: UBERON:0006964 @@ -26012,14 +26011,14 @@ synonym: "pars glandularis" RELATED [] synonym: "pars glandularis of adenohypophysis" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0002196 ! adenohypophysis +relationship: BFO:0000050 UBERON:0002196 ! part of adenohypophysis [Term] id: UBERON:0006965 name: vascular cord def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0014903 ! primordial vasculature +relationship: BFO:0000050 UBERON:0014903 ! part of primordial vasculature [Term] id: UBERON:0006966 @@ -26029,8 +26028,8 @@ synonym: "heart capillary" EXACT [] is_a: UBERON:0001982 ! capillary is_a: UBERON:0003498 ! heart blood vessel intersection_of: UBERON:0001982 ! capillary -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0018674 ! heart vasculature +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0018674 ! part of heart vasculature [Term] id: UBERON:0007005 @@ -26043,9 +26042,9 @@ synonym: "cardiogenic splanchnopleure" EXACT [] synonym: "heart primordia" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0004140 ! primary heart field -relationship: BFO:0000050 UBERON:0009881 ! anterior lateral plate mesoderm -relationship: RO:0002202 UBERON:0004872 ! splanchnic layer of lateral plate mesoderm +relationship: BFO:0000050 UBERON:0004140 ! part of primary heart field +relationship: BFO:0000050 UBERON:0009881 ! part of anterior lateral plate mesoderm +relationship: RO:0002202 UBERON:0004872 ! develops_from splanchnic layer of lateral plate mesoderm [Term] id: UBERON:0007010 @@ -26075,7 +26074,7 @@ id: UBERON:0007098 name: mandibular neural crest def: "Cranial neural crest that migrates into the mandibular arch." [] is_a: UBERON:0003099 ! cranial neural crest -relationship: BFO:0000050 UBERON:0003852 ! rhombencephalon neural crest +relationship: BFO:0000050 UBERON:0003852 ! part of rhombencephalon neural crest [Term] id: UBERON:0007099 @@ -26083,7 +26082,7 @@ name: hyoid neural crest def: "Cranial neural crest that migrates into the hyoid arch." [] synonym: "hyoid crest" EXACT [] is_a: UBERON:0003099 ! cranial neural crest -relationship: BFO:0000050 UBERON:0003852 ! rhombencephalon neural crest +relationship: BFO:0000050 UBERON:0003852 ! part of rhombencephalon neural crest [Term] id: UBERON:0007100 @@ -26106,8 +26105,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ -intersection_of: BFO:0000050 UBERON:0000981 ! femur -relationship: BFO:0000050 UBERON:0006863 ! proximal metaphysis of femur +intersection_of: BFO:0000050 UBERON:0000981 ! part of femur +relationship: BFO:0000050 UBERON:0006863 ! part of proximal metaphysis of femur [Term] id: UBERON:0007122 @@ -26149,7 +26148,7 @@ def: "Portion of tissue that consists of the precursors of the pronephric glomus synonym: "corpuscle" RELATED [] synonym: "glomerulus" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: RO:0002202 UBERON:0003064 ! intermediate mesoderm +relationship: RO:0002202 UBERON:0003064 ! develops_from intermediate mesoderm [Term] id: UBERON:0007134 @@ -26160,7 +26159,7 @@ synonym: "trunk ganglia" EXACT [] is_a: UBERON:0000045 ! ganglion is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0000045 ! ganglion -intersection_of: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0007135 @@ -26168,7 +26167,7 @@ name: neural keel def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [] synonym: "presumptive central nervous system" RELATED [] is_a: UBERON:0016879 ! future central nervous system -relationship: RO:0002202 UBERON:0003075 ! neural plate +relationship: RO:0002202 UBERON:0003075 ! develops_from neural plate [Term] id: UBERON:0007177 @@ -26180,8 +26179,8 @@ synonym: "lamina propria of colonic mucosa" EXACT [] synonym: "lamina propria of colonic mucous membrane" EXACT [] is_a: UBERON:0011189 ! lamina propria of large intestine intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0000317 ! colonic mucosa -relationship: BFO:0000050 UBERON:0000317 ! colonic mucosa +intersection_of: BFO:0000050 UBERON:0000317 ! part of colonic mucosa +relationship: BFO:0000050 UBERON:0000317 ! part of colonic mucosa [Term] id: UBERON:0007188 @@ -26192,8 +26191,8 @@ synonym: "pericardial mesothelium" EXACT [] synonym: "serous pericardium mesothelium" EXACT [] is_a: UBERON:0003388 ! mesothelium of pericardial cavity intersection_of: UBERON:0001136 ! mesothelium -intersection_of: BFO:0000050 UBERON:0002357 ! serous pericardium -relationship: BFO:0000050 UBERON:0002357 ! serous pericardium +intersection_of: BFO:0000050 UBERON:0002357 ! part of serous pericardium +relationship: BFO:0000050 UBERON:0002357 ! part of serous pericardium [Term] id: UBERON:0007195 @@ -26203,10 +26202,10 @@ synonym: "bone marrow stroma" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0002371 ! bone marrow -relationship: BFO:0000050 UBERON:0002371 ! bone marrow -relationship: BFO:0000051 UBERON:0000332 ! yellow bone marrow -relationship: BFO:0000051 UBERON:0003909 ! sinusoid +intersection_of: BFO:0000050 UBERON:0002371 ! part of bone marrow +relationship: BFO:0000050 UBERON:0002371 ! part of bone marrow +relationship: BFO:0000051 UBERON:0000332 ! has part yellow bone marrow +relationship: BFO:0000051 UBERON:0003909 ! has part sinusoid [Term] id: UBERON:0007196 @@ -26216,10 +26215,10 @@ synonym: "arbor tracheobronchialis" EXACT [] synonym: "tracheobronchial system" RELATED [] is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000051 UBERON:0002185 ! bronchus -relationship: BFO:0000051 UBERON:0003126 ! trachea -relationship: BFO:0000051 UBERON:0007592 ! ciliated columnar epithelium +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000051 UBERON:0002185 ! has part bronchus +relationship: BFO:0000051 UBERON:0003126 ! has part trachea +relationship: BFO:0000051 UBERON:0007592 ! has part ciliated columnar epithelium [Term] id: UBERON:0007197 @@ -26245,8 +26244,8 @@ synonym: "head neural crest derived mesenchyme" EXACT [] is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: RO:0002202 UBERON:0003099 ! cranial neural crest -relationship: RO:0002202 UBERON:0003099 ! cranial neural crest +intersection_of: RO:0002202 UBERON:0003099 ! develops_from cranial neural crest +relationship: RO:0002202 UBERON:0003099 ! develops_from cranial neural crest [Term] id: UBERON:0007214 @@ -26257,8 +26256,8 @@ synonym: "trunk neural crest derived mesenchyme" EXACT [] is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: RO:0002202 UBERON:0003083 ! trunk neural crest -relationship: RO:0002202 UBERON:0003083 ! trunk neural crest +intersection_of: RO:0002202 UBERON:0003083 ! develops_from trunk neural crest +relationship: RO:0002202 UBERON:0003083 ! develops_from trunk neural crest [Term] id: UBERON:0007237 @@ -26267,13 +26266,13 @@ synonym: "ventral mandibular arch" RELATED [] synonym: "ventral pharyngeal arch 1" EXACT [] synonym: "ventral visceral arch 1" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 +relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 [Term] id: UBERON:0007238 name: 1st arch maxillary component is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 +relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 [Term] id: UBERON:0007240 @@ -26283,8 +26282,8 @@ synonym: "arterial adventitia" EXACT [] synonym: "tunica externa (adventitia)(arteriae)" EXACT [] is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel -intersection_of: BFO:0000050 UBERON:0001637 ! artery -relationship: BFO:0000050 UBERON:0000415 ! artery wall +intersection_of: BFO:0000050 UBERON:0001637 ! part of artery +relationship: BFO:0000050 UBERON:0000415 ! part of artery wall [Term] id: UBERON:0007241 @@ -26294,8 +26293,8 @@ synonym: "tunica externa (adventitia)(venae)" EXACT [] synonym: "venous adventitia" EXACT [] is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel -intersection_of: BFO:0000050 UBERON:0001638 ! vein -relationship: BFO:0000050 UBERON:0001638 ! vein +intersection_of: BFO:0000050 UBERON:0001638 ! part of vein +relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0007242 @@ -26306,8 +26305,8 @@ synonym: "venous intima" EXACT [] is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0004797 ! blood vessel layer intersection_of: UBERON:0002523 ! tunica intima -intersection_of: BFO:0000050 UBERON:0001638 ! vein -relationship: BFO:0000050 UBERON:0001638 ! vein +intersection_of: BFO:0000050 UBERON:0001638 ! part of vein +relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0007245 @@ -26317,7 +26316,7 @@ synonym: "cluster of neural nuclei" RELATED [] synonym: "neural nuclei" RELATED [] synonym: "nuclear complex" RELATED [] is_a: UBERON:0002020 ! gray matter -relationship: BFO:0000051 UBERON:0000125 ! neural nucleus +relationship: BFO:0000051 UBERON:0000125 ! has part neural nucleus [Term] id: UBERON:0007267 @@ -26326,8 +26325,8 @@ def: "A pre-cartilage condensation that is part of a trachea." [] is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0009505 ! mesenchyme of trachea intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: RO:0002202 UBERON:0009505 ! mesenchyme of trachea +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: RO:0002202 UBERON:0009505 ! develops_from mesenchyme of trachea [Term] id: UBERON:0007269 @@ -26338,8 +26337,8 @@ synonym: "pectoral fin musculature" NARROW [] is_a: UBERON:0007271 ! appendage musculature is_a: UBERON:0014793 ! musculature of pectoral complex intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0004710 ! pectoral appendage +intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage +relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage [Term] id: UBERON:0007270 @@ -26349,8 +26348,8 @@ synonym: "pelvic fin musculature" NARROW [] is_a: UBERON:0007271 ! appendage musculature is_a: UBERON:0014792 ! musculature of pelvic complex intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0004709 ! pelvic appendage -relationship: BFO:0000050 UBERON:0004709 ! pelvic appendage +intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage +relationship: BFO:0000050 UBERON:0004709 ! part of pelvic appendage [Term] id: UBERON:0007271 @@ -26359,8 +26358,8 @@ def: "Any collection of muscles that is part of an appendage." [] synonym: "fin musculature" NARROW [] is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0000026 ! appendage -relationship: BFO:0000050 UBERON:0000026 ! appendage +intersection_of: BFO:0000050 UBERON:0000026 ! part of appendage +relationship: BFO:0000050 UBERON:0000026 ! part of appendage [Term] id: UBERON:0007272 @@ -26368,14 +26367,14 @@ name: pectoral appendage skeleton def: "Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle." [] synonym: "cheiropterygium" RELATED [] is_a: UBERON:0011582 ! paired limb/fin skeleton -relationship: BFO:0000050 UBERON:0004710 ! pectoral appendage +relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage [Term] id: UBERON:0007273 name: pelvic appendage skeleton def: "The collection of all skeletal elements in a pelvic appendage region." [] is_a: UBERON:0011582 ! paired limb/fin skeleton -relationship: BFO:0000050 UBERON:0004709 ! pelvic appendage +relationship: BFO:0000050 UBERON:0004709 ! part of pelvic appendage [Term] id: UBERON:0007277 @@ -26386,15 +26385,15 @@ synonym: "future hindbrain" RELATED [] synonym: "presumptive rhombencephalon" EXACT [] synonym: "rhombencephalon" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0006238 ! future brain -relationship: RO:0002202 UBERON:0003076 ! posterior neural tube +relationship: BFO:0000050 UBERON:0006238 ! part of future brain +relationship: RO:0002202 UBERON:0003076 ! develops_from posterior neural tube [Term] id: UBERON:0007280 name: presumptive endocardium def: "A presumptive structure that has the potential to develop into a endocardium." [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0005498 ! primitive heart tube +relationship: BFO:0000050 UBERON:0005498 ! part of primitive heart tube [Term] id: UBERON:0007281 @@ -26403,7 +26402,7 @@ def: "Embryonic structure that gives rise to the midbrain hindbrain boundary." [ synonym: "presumptive MHB" EXACT [] synonym: "presumptive midbrain-hindbrain boundary" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0006238 ! future brain +relationship: BFO:0000050 UBERON:0006238 ! part of future brain [Term] id: UBERON:0007282 @@ -26411,7 +26410,7 @@ name: presumptive segmental plate def: "A presumptive structure that has the potential to develop into a presomitic mesoderm." [] synonym: "presumptive segmental plates" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: RO:0002202 UBERON:0009618 ! trunk paraxial mesoderm +relationship: RO:0002202 UBERON:0009618 ! develops_from trunk paraxial mesoderm [Term] id: UBERON:0007284 @@ -26420,8 +26419,8 @@ def: "A presumptive structure that has the potential to develop into a neural pl synonym: "prospective neuroectoderm" EXACT [] synonym: "prospective vegetal ectoderm" EXACT [] is_a: UBERON:0016879 ! future central nervous system -relationship: BFO:0000050 UBERON:0004734 ! gastrula -relationship: RO:0002202 UBERON:0002346 ! neurectoderm +relationship: BFO:0000050 UBERON:0004734 ! part of gastrula +relationship: RO:0002202 UBERON:0002346 ! develops_from neurectoderm [Term] id: UBERON:0007285 @@ -26430,7 +26429,7 @@ def: "The part of the blastula that has the potential to develop into a paraxial synonym: "future paraxial mesenchyme" EXACT [] synonym: "future paraxial mesoderm" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0000307 ! blastula +relationship: BFO:0000050 UBERON:0000307 ! part of blastula [Term] id: UBERON:0007297 @@ -26446,8 +26445,8 @@ def: "A proximal convoluted tubule that is part of a pronephros." [] is_a: UBERON:0001287 ! proximal convoluted tubule is_a: UBERON:0005310 ! pronephric nephron tubule intersection_of: UBERON:0001287 ! proximal convoluted tubule -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0005309 ! pronephric nephron +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron [Term] id: UBERON:0007300 @@ -26456,8 +26455,8 @@ def: "A blood vessel that is part of a pectoral appendage." [] synonym: "pectoral fin blood vessel" NARROW [] is_a: UBERON:0007301 ! appendage blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0004710 ! pectoral appendage +intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage +relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage [Term] id: UBERON:0007301 @@ -26467,8 +26466,8 @@ synonym: "fin blood vessel" NARROW [] synonym: "limb blood vessel" NARROW [] is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0000026 ! appendage -relationship: BFO:0000050 UBERON:0007304 ! appendage vasculature +intersection_of: BFO:0000050 UBERON:0000026 ! part of appendage +relationship: BFO:0000050 UBERON:0007304 ! part of appendage vasculature [Term] id: UBERON:0007302 @@ -26477,8 +26476,8 @@ def: "A vasculature that is part of a pectoral appendage." [] synonym: "pectoral fin vasculature" NARROW [] is_a: UBERON:0007304 ! appendage vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0004710 ! pectoral appendage +intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage +relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage [Term] id: UBERON:0007303 @@ -26487,8 +26486,8 @@ def: "A vasculature that is part of a chordate pharynx." [] synonym: "branchial vasculature" EXACT [] is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0007304 @@ -26497,8 +26496,8 @@ def: "A vasculature that is part of a limb/fin." [] synonym: "fin vasculature" NARROW [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000026 ! appendage -relationship: BFO:0000050 UBERON:0000026 ! appendage +intersection_of: BFO:0000050 UBERON:0000026 ! part of appendage +relationship: BFO:0000050 UBERON:0000026 ! part of appendage [Term] id: UBERON:0007306 @@ -26506,9 +26505,9 @@ name: pronephric glomerular capillary def: "A glomerular capillary that is part of a pronephros." [] is_a: UBERON:0004212 ! glomerular capillary intersection_of: UBERON:0004212 ! glomerular capillary -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0004739 ! pronephric glomerulus -relationship: BFO:0000050 UBERON:0005309 ! pronephric nephron +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0004739 ! part of pronephric glomerulus +relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron [Term] id: UBERON:0007307 @@ -26517,8 +26516,8 @@ def: "A glomerular basement membrane that is part of a pronephros." [] synonym: "pronephric glomerular filtration membrane" EXACT [] is_a: UBERON:0005777 ! glomerular basement membrane intersection_of: UBERON:0005777 ! glomerular basement membrane -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0004739 ! pronephric glomerulus +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0004739 ! part of pronephric glomerulus [Term] id: UBERON:0007324 @@ -26529,9 +26528,9 @@ synonym: "pancreas lobe" EXACT [] synonym: "pancreatic lobule" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure -relationship: BFO:0000050 UBERON:0000017 ! exocrine pancreas -relationship: BFO:0000051 UBERON:0001263 ! pancreatic acinus -relationship: BFO:0000051 UBERON:0014719 ! intralobular duct +relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas +relationship: BFO:0000051 UBERON:0001263 ! has part pancreatic acinus +relationship: BFO:0000051 UBERON:0014719 ! has part intralobular duct [Term] id: UBERON:0007329 @@ -26542,7 +26541,7 @@ synonym: "ductus pancreaticus" RELATED [] synonym: "pancreas duct" EXACT [] is_a: UBERON:0003928 ! digestive system duct is_a: UBERON:0004119 ! endoderm-derived structure -relationship: BFO:0000050 UBERON:0000017 ! exocrine pancreas +relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas [Term] id: UBERON:0007352 @@ -26553,8 +26552,8 @@ synonym: "stria vascularis blood vessels" EXACT [] is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0002282 ! stria vascularis of cochlear duct -relationship: BFO:0000050 UBERON:0002282 ! stria vascularis of cochlear duct +intersection_of: BFO:0000050 UBERON:0002282 ! part of stria vascularis of cochlear duct +relationship: BFO:0000050 UBERON:0002282 ! part of stria vascularis of cochlear duct [Term] id: UBERON:0007376 @@ -26568,8 +26567,8 @@ synonym: "outer epidermal layer" EXACT [] synonym: "outer epithelial layer" EXACT [] is_a: UBERON:0003102 ! surface structure is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism -relationship: RO:0002202 UBERON:0007383 ! enveloping layer of ectoderm +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism +relationship: RO:0002202 UBERON:0007383 ! develops_from enveloping layer of ectoderm [Term] id: UBERON:0007383 @@ -26580,8 +26579,8 @@ synonym: "EVL" EXACT [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0007384 @@ -26589,9 +26588,9 @@ name: appendage lymph vessel def: "A lymphatic vessel that is part of a limb/fin." [] is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0004708 ! paired limb/fin -relationship: BFO:0000050 UBERON:0004708 ! paired limb/fin -relationship: BFO:0000050 UBERON:0007304 ! appendage vasculature +intersection_of: BFO:0000050 UBERON:0004708 ! part of paired limb/fin +relationship: BFO:0000050 UBERON:0004708 ! part of paired limb/fin +relationship: BFO:0000050 UBERON:0007304 ! part of appendage vasculature [Term] id: UBERON:0007385 @@ -26599,8 +26598,8 @@ name: pectoral appendage lymph vessel def: "A lymphatic vessel that is part of a pectoral appendage." [] is_a: UBERON:0007384 ! appendage lymph vessel intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0007302 ! pectoral appendage vasculature +intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage +relationship: BFO:0000050 UBERON:0007302 ! part of pectoral appendage vasculature [Term] id: UBERON:0007386 @@ -26608,8 +26607,8 @@ name: pelvic appendage lymph vessel def: "A lymphatic vessel that is part of a pelvic appendage." [] is_a: UBERON:0007384 ! appendage lymph vessel intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0004709 ! pelvic appendage -relationship: BFO:0000050 UBERON:0004709 ! pelvic appendage +intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage +relationship: BFO:0000050 UBERON:0004709 ! part of pelvic appendage [Term] id: UBERON:0007389 @@ -26617,9 +26616,9 @@ name: paired limb/fin cartilage def: "A cartilage tissue that is part of a paired limb or fin." [] is_a: UBERON:0002418 ! cartilage tissue intersection_of: UBERON:0002418 ! cartilage tissue -intersection_of: BFO:0000050 UBERON:0004708 ! paired limb/fin -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0004708 ! paired limb/fin +intersection_of: BFO:0000050 UBERON:0004708 ! part of paired limb/fin +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0004708 ! part of paired limb/fin [Term] id: UBERON:0007390 @@ -26629,8 +26628,8 @@ synonym: "pectoral fin cartilage" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue -intersection_of: BFO:0000050 UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0007272 ! pectoral appendage skeleton +intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage +relationship: BFO:0000050 UBERON:0007272 ! part of pectoral appendage skeleton [Term] id: UBERON:0007391 @@ -26640,8 +26639,8 @@ synonym: "pelvic fin cartilage" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue -intersection_of: BFO:0000050 UBERON:0004709 ! pelvic appendage -relationship: BFO:0000050 UBERON:0007273 ! pelvic appendage skeleton +intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage +relationship: BFO:0000050 UBERON:0007273 ! part of pelvic appendage skeleton [Term] id: UBERON:0007414 @@ -26676,7 +26675,7 @@ name: arborizing epithelial duct system def: "A collection of connected epithelial tubes with a single portal." [] synonym: "arborising epithelial duct system" EXACT [] is_a: UBERON:0007499 ! epithelial sac -relationship: BFO:0000051 UBERON:0003914 ! epithelial tube +relationship: BFO:0000051 UBERON:0003914 ! has part epithelial tube [Term] id: UBERON:0007503 @@ -26689,7 +26688,7 @@ id: UBERON:0007521 name: smooth muscle sphincter def: "A ring of smooth muscle cells whose contraction closes the opening of the ring." [] is_a: UBERON:0004590 ! sphincter muscle -relationship: BFO:0000051 UBERON:0001135 ! smooth muscle tissue +relationship: BFO:0000051 UBERON:0001135 ! has part smooth muscle tissue [Term] id: UBERON:0007524 @@ -26718,7 +26717,7 @@ synonym: "uterine tube epithelium" RELATED [] is_a: UBERON:0004804 ! oviduct epithelium is_a: UBERON:0007592 ! ciliated columnar epithelium intersection_of: UBERON:0007592 ! ciliated columnar epithelium -intersection_of: BFO:0000050 UBERON:0000993 ! oviduct +intersection_of: BFO:0000050 UBERON:0000993 ! part of oviduct [Term] id: UBERON:0007590 @@ -26727,7 +26726,7 @@ def: "A cuboidal epithelium that is part of a oviduct." [] is_a: UBERON:0004804 ! oviduct epithelium is_a: UBERON:0010077 ! cuboidal epithelium intersection_of: UBERON:0010077 ! cuboidal epithelium -intersection_of: BFO:0000050 UBERON:0000993 ! oviduct +intersection_of: BFO:0000050 UBERON:0000993 ! part of oviduct [Term] id: UBERON:0007592 @@ -26760,7 +26759,7 @@ synonym: "synovial membrane" NARROW [] synonym: "synovial tissue" RELATED [] synonym: "synovium" EXACT [] is_a: UBERON:0000042 ! serous membrane -relationship: BFO:0000051 UBERON:0002384 ! connective tissue +relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue [Term] id: UBERON:0007625 @@ -26769,8 +26768,8 @@ def: "epithelial layer of the retina, ciliary body, or iris composed of cells co synonym: "eye pigment epithelium" RELATED [] is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000970 ! eye -relationship: BFO:0000050 UBERON:0000970 ! eye +intersection_of: BFO:0000050 UBERON:0000970 ! part of eye +relationship: BFO:0000050 UBERON:0000970 ! part of eye [Term] id: UBERON:0007635 @@ -26779,8 +26778,8 @@ def: "A neural nucleus that is part of a medulla oblongata." [] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus intersection_of: UBERON:0000125 ! neural nucleus -intersection_of: BFO:0000050 UBERON:0001896 ! medulla oblongata -relationship: BFO:0000050 UBERON:0001896 ! medulla oblongata +intersection_of: BFO:0000050 UBERON:0001896 ! part of medulla oblongata +relationship: BFO:0000050 UBERON:0001896 ! part of medulla oblongata [Term] id: UBERON:0007644 @@ -26791,7 +26790,7 @@ synonym: "lymph node of thorax" EXACT [] is_a: UBERON:0000029 ! lymph node is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0007645 @@ -26802,7 +26801,7 @@ synonym: "primary meninx" EXACT [] synonym: "primitive meninx" RELATED [] synonym: "primordial meninx" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0010743 ! meningeal cluster +relationship: BFO:0000050 UBERON:0010743 ! part of meningeal cluster [Term] id: UBERON:0007647 @@ -26810,7 +26809,7 @@ name: ectomeninx def: "The outermost layer of the mesenchymal capsule that surrounds the developing brain, of mixed paraxial mesoderm and neural crest origin. The ectomeninx forms the dura mater (both inner layer and outer chondrogenic layer)." [] synonym: "future dura mater" EXACT [] is_a: UBERON:0007645 ! future meninx -relationship: RO:0002202 UBERON:0009617 ! head paraxial mesoderm +relationship: RO:0002202 UBERON:0009617 ! develops_from head paraxial mesoderm [Term] id: UBERON:0007651 @@ -26827,7 +26826,7 @@ def: "A sphincter that is part of an esophagus." [] is_a: UBERON:0003832 ! esophagus muscle is_a: UBERON:0004590 ! sphincter muscle intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0007684 @@ -26836,9 +26835,9 @@ def: "functional unit of the kidney that forms urine, consisting of two parts, t is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube -relationship: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000051 UBERON:0001232 ! collecting duct of renal tubule -relationship: BFO:0000051 UBERON:0001285 ! nephron +relationship: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000051 UBERON:0001232 ! has part collecting duct of renal tubule +relationship: BFO:0000051 UBERON:0001285 ! has part nephron [Term] id: UBERON:0007685 @@ -26874,8 +26873,8 @@ def: "endodermal bud derived from the endodermal epithelium of the embryonic pha synonym: "diverticulum thyroideum" RELATED [] synonym: "saccus thyroideus" RELATED [] is_a: UBERON:0001048 ! primordium -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: RO:0002202 UBERON:0003091 ! thyroid primordium +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: RO:0002202 UBERON:0003091 ! develops_from thyroid primordium [Term] id: UBERON:0007690 @@ -26888,8 +26887,8 @@ synonym: "pharyngeal region endoderm" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0009722 ! entire pharyngeal arch endoderm -relationship: RO:0002202 UBERON:0000925 ! endoderm +relationship: BFO:0000050 UBERON:0009722 ! part of entire pharyngeal arch endoderm +relationship: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0007692 @@ -26899,8 +26898,8 @@ synonym: "nuclear complex of thalamus" RELATED [] synonym: "thalamic nucleus" EXACT [] is_a: UBERON:0006569 ! diencephalic nucleus intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0001897 ! dorsal plus ventral thalamus -relationship: BFO:0000050 UBERON:0001897 ! dorsal plus ventral thalamus +intersection_of: BFO:0000050 UBERON:0001897 ! part of dorsal plus ventral thalamus +relationship: BFO:0000050 UBERON:0001897 ! part of dorsal plus ventral thalamus [Term] id: UBERON:0007719 @@ -26911,8 +26910,8 @@ synonym: "os penis/os clitoris" RELATED [] is_a: UBERON:0001474 ! bone element is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0003133 ! reproductive organ -relationship: BFO:0000050 UBERON:0003133 ! reproductive organ +intersection_of: BFO:0000050 UBERON:0003133 ! part of reproductive organ +relationship: BFO:0000050 UBERON:0003133 ! part of reproductive organ [Term] id: UBERON:0007771 @@ -26922,8 +26921,8 @@ synonym: "epidermal gland" EXACT [] synonym: "gland of epidermis" EXACT [] is_a: UBERON:0002419 ! skin gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001003 ! skin epidermis -relationship: BFO:0000050 UBERON:0001003 ! skin epidermis +intersection_of: BFO:0000050 UBERON:0001003 ! part of skin epidermis +relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis [Term] id: UBERON:0007777 @@ -26931,8 +26930,8 @@ name: umbilical vein endothelium def: "An endothelium that is part of a umbilical vein." [] is_a: UBERON:0001919 ! endothelium of vein intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0002066 ! umbilical vein -relationship: BFO:0000050 UBERON:0002066 ! umbilical vein +intersection_of: BFO:0000050 UBERON:0002066 ! part of umbilical vein +relationship: BFO:0000050 UBERON:0002066 ! part of umbilical vein [Term] id: UBERON:0007778 @@ -26941,8 +26940,8 @@ def: "An endothelium that is part of a umbilical artery." [] is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001310 ! umbilical artery -relationship: BFO:0000050 UBERON:0001310 ! umbilical artery +intersection_of: BFO:0000050 UBERON:0001310 ! part of umbilical artery +relationship: BFO:0000050 UBERON:0001310 ! part of umbilical artery [Term] id: UBERON:0007779 @@ -26950,7 +26949,7 @@ name: transudate def: "Any bodily fluid that has passed through a membrane such as the capillary wall, as a result of unbalanced hydrostatic and osmotic forces" [] synonym: "plasma ultrafiltrate" RELATED [] is_a: UBERON:0006314 ! bodily fluid -relationship: RO:0002202 UBERON:0001969 ! blood plasma +relationship: RO:0002202 UBERON:0001969 ! develops_from blood plasma [Term] id: UBERON:0007798 @@ -26958,14 +26957,14 @@ name: vascular system def: "Anatomical system that consists of all blood and lymph vessels." [] synonym: "Gefaesssystem@de" RELATED [] is_a: UBERON:0000467 ! anatomical system -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0007806 name: connecting stalk def: "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [] is_a: UBERON:0000478 ! extraembryonic structure -relationship: RO:0002202 UBERON:0005728 ! extraembryonic mesoderm +relationship: RO:0002202 UBERON:0005728 ! develops_from extraembryonic mesoderm [Term] id: UBERON:0007807 @@ -26976,9 +26975,9 @@ synonym: "connecting stalk blood vessels" EXACT [] synonym: "vasculature of connecting stalk" RELATED [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0007806 ! connecting stalk -relationship: BFO:0000050 UBERON:0007806 ! connecting stalk -relationship: RO:0002202 UBERON:0011921 ! connecting stalk blood islands +intersection_of: BFO:0000050 UBERON:0007806 ! part of connecting stalk +relationship: BFO:0000050 UBERON:0007806 ! part of connecting stalk +relationship: RO:0002202 UBERON:0011921 ! develops_from connecting stalk blood islands [Term] id: UBERON:0007808 @@ -26990,7 +26989,7 @@ synonym: "intra-abdominal fat" RELATED [] is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003567 ! abdomen connective tissue intersection_of: UBERON:0001013 ! adipose tissue -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0007811 @@ -27002,10 +27001,10 @@ synonym: "cephalic region" RELATED [] synonym: "head and neck" RELATED [] synonym: "head or neck" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0000153 ! anterior region of body -relationship: BFO:0000050 UBERON:0013702 ! body proper -relationship: BFO:0000051 UBERON:0000033 ! head -relationship: BFO:0000051 UBERON:0006562 ! pharynx +relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body +relationship: BFO:0000050 UBERON:0013702 ! part of body proper +relationship: BFO:0000051 UBERON:0000033 ! has part head +relationship: BFO:0000051 UBERON:0006562 ! has part pharynx [Term] id: UBERON:0007823 @@ -27018,8 +27017,8 @@ synonym: "girdle region" BROAD [] synonym: "limb girdle" RELATED [] synonym: "limb girdle region" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0010707 ! appendage girdle complex -relationship: BFO:0000051 UBERON:0010719 ! girdle skeleton +relationship: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex +relationship: BFO:0000051 UBERON:0010719 ! has part girdle skeleton [Term] id: UBERON:0007826 @@ -27028,9 +27027,9 @@ def: "Mesentery that is located in the peritoneum." [] is_a: UBERON:0002095 ! mesentery is_a: UBERON:0002358 ! peritoneum intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0002358 ! peritoneum -relationship: BFO:0000050 UBERON:0001178 ! visceral peritoneum -relationship: BFO:0000050 UBERON:0002358 ! peritoneum +intersection_of: BFO:0000050 UBERON:0002358 ! part of peritoneum +relationship: BFO:0000050 UBERON:0001178 ! part of visceral peritoneum +relationship: BFO:0000050 UBERON:0002358 ! part of peritoneum [Term] id: UBERON:0007828 @@ -27039,8 +27038,8 @@ def: "A bone that is part of a appendage girdle region." [] synonym: "girdle bone" EXACT [] is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0007823 ! appendage girdle region -relationship: BFO:0000050 UBERON:0010719 ! girdle skeleton +intersection_of: BFO:0000050 UBERON:0007823 ! part of appendage girdle region +relationship: BFO:0000050 UBERON:0010719 ! part of girdle skeleton [Term] id: UBERON:0007829 @@ -27050,8 +27049,8 @@ synonym: "bone of pectoral girdle" EXACT [] is_a: UBERON:0007828 ! girdle bone/zone is_a: UBERON:0010741 ! bone of pectoral complex intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000050 UBERON:0007831 ! pectoral girdle skeleton +intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region +relationship: BFO:0000050 UBERON:0007831 ! part of pectoral girdle skeleton [Term] id: UBERON:0007830 @@ -27066,8 +27065,8 @@ is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007828 ! girdle bone/zone is_a: UBERON:0010742 ! bone of pelvic complex intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0007832 ! pelvic girdle skeleton -relationship: BFO:0000050 UBERON:0007832 ! pelvic girdle skeleton +intersection_of: BFO:0000050 UBERON:0007832 ! part of pelvic girdle skeleton +relationship: BFO:0000050 UBERON:0007832 ! part of pelvic girdle skeleton [Term] id: UBERON:0007831 @@ -27079,9 +27078,9 @@ synonym: "scapular girdle" RELATED [] synonym: "skeletal parts of pectoral girdle" EXACT [] synonym: "skeleton of pectoral girdle" EXACT [] is_a: UBERON:0010719 ! girdle skeleton -relationship: BFO:0000050 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0012475 ! skeleton of pectoral complex +relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0012475 ! part of skeleton of pectoral complex [Term] id: UBERON:0007832 @@ -27093,9 +27092,9 @@ synonym: "skeletal parts of pelvic girdle" EXACT [] synonym: "skeleton of pelvic girdle" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010719 ! girdle skeleton -relationship: BFO:0000050 UBERON:0001271 ! pelvic girdle region -relationship: BFO:0000050 UBERON:0012476 ! skeleton of pelvic complex -relationship: RO:0002202 UBERON:0010377 ! mesenchyme from somatopleure +relationship: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region +relationship: BFO:0000050 UBERON:0012476 ! part of skeleton of pelvic complex +relationship: RO:0002202 UBERON:0010377 ! develops_from mesenchyme from somatopleure [Term] id: UBERON:0007842 @@ -27113,8 +27112,8 @@ synonym: "cartilage organ" EXACT [] synonym: "cartilaginous element" EXACT [] synonym: "chondrogenic element" EXACT [] is_a: UBERON:0004765 ! skeletal element -relationship: BFO:0000051 UBERON:0002418 ! cartilage tissue -relationship: RO:0002202 UBERON:0005863 ! cartilaginous condensation +relationship: BFO:0000051 UBERON:0002418 ! has part cartilage tissue +relationship: RO:0002202 UBERON:0005863 ! develops_from cartilaginous condensation [Term] id: UBERON:0007845 @@ -27122,7 +27121,7 @@ name: regular connective tissue def: "Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular connective tissue." [] is_a: UBERON:0002384 ! connective tissue disjoint_from: UBERON:0011821 ! irregular connective tissue -relationship: BFO:0000051 UBERON:0011860 ! collection of collagen fibrils +relationship: BFO:0000051 UBERON:0011860 ! has part collection of collagen fibrils [Term] id: UBERON:0007846 @@ -27144,8 +27143,8 @@ synonym: "cranial bone" RELATED [] synonym: "head or neck bone" EXACT [] is_a: UBERON:0001474 ! bone element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0007811 ! craniocervical region -relationship: BFO:0000050 UBERON:0007811 ! craniocervical region +intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region +relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0008001 @@ -27162,8 +27161,8 @@ def: "A skeletal joint that is part of a appendage girdle region." [] synonym: "girdle joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0007823 ! appendage girdle region -relationship: BFO:0000050 UBERON:0007823 ! appendage girdle region +intersection_of: BFO:0000050 UBERON:0007823 ! part of appendage girdle region +relationship: BFO:0000050 UBERON:0007823 ! part of appendage girdle region [Term] id: UBERON:0008193 @@ -27174,8 +27173,8 @@ synonym: "os pneumaticum" EXACT [] synonym: "pneumatic bone" EXACT [] is_a: UBERON:0001474 ! bone element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000051 UBERON:0010528 ! pneumatic cavity of bone -relationship: BFO:0000051 UBERON:0010528 ! pneumatic cavity of bone +intersection_of: BFO:0000051 UBERON:0010528 ! has part pneumatic cavity of bone +relationship: BFO:0000051 UBERON:0010528 ! has part pneumatic cavity of bone [Term] id: UBERON:0008196 @@ -27185,8 +27184,8 @@ synonym: "muscle of shoulder girdle" EXACT [] synonym: "pectoral girdle muscle" EXACT [] is_a: UBERON:0010891 ! pectoral complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000050 UBERON:0004471 ! musculature of pectoral girdle +intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region +relationship: BFO:0000050 UBERON:0004471 ! part of musculature of pectoral girdle [Term] id: UBERON:0008202 @@ -27202,8 +27201,8 @@ synonym: "head or neck muscle" EXACT [] synonym: "head or neck muscle" RELATED [] is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0007811 ! craniocervical region -relationship: BFO:0000050 UBERON:0007811 ! craniocervical region +intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region +relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0008266 @@ -27231,10 +27230,10 @@ synonym: "periodontium" RELATED [] is_a: UBERON:0008846 ! skeletal ligament is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000211 ! ligament -intersection_of: BFO:0000050 UBERON:0001758 ! periodontium -relationship: BFO:0000050 UBERON:0001758 ! periodontium -relationship: RO:0002202 UBERON:0002342 ! neural crest -relationship: RO:0002202 UBERON:0008969 ! dental follicle +intersection_of: BFO:0000050 UBERON:0001758 ! part of periodontium +relationship: BFO:0000050 UBERON:0001758 ! part of periodontium +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: RO:0002202 UBERON:0008969 ! develops_from dental follicle [Term] id: UBERON:0008281 @@ -27244,7 +27243,7 @@ synonym: "dental bud" EXACT [] synonym: "dental germ" EXACT [] synonym: "tooth germ" EXACT [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: RO:0002202 UBERON:0005087 ! tooth placode +relationship: RO:0002202 UBERON:0005087 ! develops_from tooth placode [Term] id: UBERON:0008307 @@ -27253,8 +27252,8 @@ def: "An endothelium that is part of a heart [Automatically generated definition synonym: "cardiac endothelium" RELATED [] is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0008310 @@ -27263,8 +27262,8 @@ def: "A gland that is part of a nasopharynx." [] is_a: UBERON:0003295 ! pharyngeal gland is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001728 ! nasopharynx -relationship: BFO:0000050 UBERON:0001728 ! nasopharynx +intersection_of: BFO:0000050 UBERON:0001728 ! part of nasopharynx +relationship: BFO:0000050 UBERON:0001728 ! part of nasopharynx [Term] id: UBERON:0008339 @@ -27277,8 +27276,8 @@ name: intestinal villus of duodenum def: "An intestinal villus in the duodenum." [] is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0000320 ! duodenal mucosa +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0000320 ! part of duodenal mucosa [Term] id: UBERON:0008343 @@ -27286,8 +27285,8 @@ name: intestinal villus of jejunum def: "An intestinal villus in the jejunum." [] is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0000399 ! jejunal mucosa +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0000399 ! part of jejunal mucosa [Term] id: UBERON:0008344 @@ -27295,8 +27294,8 @@ name: intestinal villus of ileum def: "An intestinal villus in the ileum." [] is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0000331 ! ileal mucosa +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0000331 ! part of ileal mucosa [Term] id: UBERON:0008345 @@ -27305,8 +27304,8 @@ def: "An epithelium that is part of a ileum." [] synonym: "epithelium of ileum" EXACT [] is_a: UBERON:0013636 ! epithelium of intestinal villus intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0008344 ! intestinal villus of ileum +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0008344 ! part of intestinal villus of ileum [Term] id: UBERON:0008346 @@ -27315,8 +27314,8 @@ def: "An epithelium that is part of a duodenum." [] synonym: "epithelium of duodenum" EXACT [] is_a: UBERON:0013636 ! epithelium of intestinal villus intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0008342 ! intestinal villus of duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0008342 ! part of intestinal villus of duodenum [Term] id: UBERON:0008367 @@ -27324,8 +27323,8 @@ name: breast epithelium def: "An epithelium that is part of a breast." [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000310 ! breast -relationship: BFO:0000050 UBERON:0000310 ! breast +intersection_of: BFO:0000050 UBERON:0000310 ! part of breast +relationship: BFO:0000050 UBERON:0000310 ! part of breast [Term] id: UBERON:0008425 @@ -27336,8 +27335,8 @@ synonym: "mammary gland ridge" EXACT [] synonym: "mammary line" RELATED [] synonym: "milk line" RELATED [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0002100 ! trunk -relationship: RO:0002202 UBERON:0000924 ! ectoderm +relationship: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0008522 @@ -27347,8 +27346,8 @@ synonym: "muscle of nose" EXACT [] is_a: UBERON:0001577 ! facial muscle is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0000004 ! nose +intersection_of: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0000004 ! part of nose [Term] id: UBERON:0008713 @@ -27367,8 +27366,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0002385 ! muscle tissue -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0008780 @@ -27377,9 +27376,9 @@ def: "An embryonic structure that is derived from the inner cell mass and lies a synonym: "embryonic epiblast" RELATED [] is_a: UBERON:0002532 ! epiblast (generic) intersection_of: UBERON:0002532 ! epiblast (generic) -intersection_of: RO:0002202 UBERON:0000087 ! inner cell mass -relationship: BFO:0000050 UBERON:0000091 ! bilaminar disc -relationship: RO:0002202 UBERON:0000087 ! inner cell mass +intersection_of: RO:0002202 UBERON:0000087 ! develops_from inner cell mass +relationship: BFO:0000050 UBERON:0000091 ! part of bilaminar disc +relationship: RO:0002202 UBERON:0000087 ! develops_from inner cell mass [Term] id: UBERON:0008784 @@ -27391,8 +27390,8 @@ synonym: "segment of free lower limb" EXACT [] synonym: "subdivision of free lower limb" EXACT [] is_a: UBERON:0002529 ! limb segment intersection_of: UBERON:0002529 ! limb segment -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0008785 @@ -27404,8 +27403,8 @@ synonym: "segment of free upper limb" EXACT [] synonym: "subdivision of free upper limb" EXACT [] is_a: UBERON:0002529 ! limb segment intersection_of: UBERON:0002529 ! limb segment -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0008811 @@ -27428,8 +27427,8 @@ synonym: "pharyngeal arches and clefts" RELATED [] synonym: "pharyngeal complex" RELATED [] synonym: "pharyngeal system" EXACT [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0009145 ! pharyngeal region of foregut +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0009145 ! part of pharyngeal region of foregut [Term] id: UBERON:0008816 @@ -27437,8 +27436,8 @@ name: embryonic head def: "A head that is part of a embryo." [] is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head -intersection_of: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0000922 ! embryo +intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0000922 ! part of embryo [Term] id: UBERON:0008817 @@ -27447,8 +27446,8 @@ def: "An endoderm that is part of a thymus primordium." [] is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000925 ! endoderm -intersection_of: BFO:0000050 UBERON:0005562 ! thymus primordium -relationship: BFO:0000050 UBERON:0005562 ! thymus primordium +intersection_of: BFO:0000050 UBERON:0005562 ! part of thymus primordium +relationship: BFO:0000050 UBERON:0005562 ! part of thymus primordium [Term] id: UBERON:0008823 @@ -27458,10 +27457,10 @@ synonym: "vertebrate brain" NARROW [] is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0000955 ! brain intersection_of: UBERON:0000955 ! brain -intersection_of: RO:0002202 UBERON:0001049 ! neural tube -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: RO:0002202 UBERON:0001049 ! neural tube -relationship: RO:0002202 UBERON:0006238 ! future brain +intersection_of: RO:0002202 UBERON:0001049 ! develops_from neural tube +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: RO:0002202 UBERON:0001049 ! develops_from neural tube +relationship: RO:0002495 UBERON:0006238 ! immediate transformation of future brain [Term] id: UBERON:0008835 @@ -27474,9 +27473,9 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum -relationship: BFO:0000050 UBERON:0004161 ! septum transversum -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: RO:0002202 UBERON:0003894 ! liver primordium +relationship: BFO:0000050 UBERON:0004161 ! part of septum transversum +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: RO:0002202 UBERON:0003894 ! develops_from liver primordium [Term] id: UBERON:0008836 @@ -27485,8 +27484,8 @@ is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: RO:0002202 UBERON:0008835 ! hepatic diverticulum +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: RO:0002202 UBERON:0008835 ! develops_from hepatic diverticulum [Term] id: UBERON:0008845 @@ -27506,8 +27505,8 @@ synonym: "articular ligament" EXACT [] synonym: "ligament" BROAD [] synonym: "true ligament" EXACT [] is_a: UBERON:0000211 ! ligament -relationship: BFO:0000050 UBERON:0001434 ! skeletal system -relationship: BFO:0000051 UBERON:0007846 ! dense regular connective tissue +relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system +relationship: BFO:0000051 UBERON:0007846 ! has part dense regular connective tissue [Term] id: UBERON:0008856 @@ -27522,9 +27521,9 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018261 ! muscular coat of digestive tract is_a: UBERON:0034933 ! layer of smooth muscle tissue intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001167 ! wall of stomach -relationship: BFO:0000050 UBERON:0001167 ! wall of stomach -relationship: BFO:0000050 UBERON:0004222 ! stomach smooth muscle +intersection_of: BFO:0000050 UBERON:0001167 ! part of wall of stomach +relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach +relationship: BFO:0000050 UBERON:0004222 ! part of stomach smooth muscle [Term] id: UBERON:0008858 @@ -27533,7 +27532,7 @@ def: "The short narrow part of the stomach extending from the pyloric antrum to synonym: "canalis pyloricus" EXACT [] synonym: "canalis pyloricus" RELATED [] is_a: UBERON:0009870 ! zone of stomach -relationship: BFO:0000050 UBERON:0001166 ! pylorus +relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0008859 @@ -27548,8 +27547,8 @@ synonym: "glandula cardiaca (gaster)" EXACT [] is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000325 ! gastric gland -intersection_of: BFO:0000050 UBERON:0001162 ! cardia of stomach -relationship: BFO:0000050 UBERON:0004996 ! mucosa of cardia of stomach +intersection_of: BFO:0000050 UBERON:0001162 ! part of cardia of stomach +relationship: BFO:0000050 UBERON:0004996 ! part of mucosa of cardia of stomach [Term] id: UBERON:0008861 @@ -27562,8 +27561,8 @@ synonym: "pyloric mucuous gland" EXACT [] is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000325 ! gastric gland -intersection_of: BFO:0000050 UBERON:0001166 ! pylorus -relationship: BFO:0000050 UBERON:0004998 ! mucosa of pylorus +intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus +relationship: BFO:0000050 UBERON:0004998 ! part of mucosa of pylorus [Term] id: UBERON:0008870 @@ -27571,8 +27570,8 @@ name: pulmonary alveolar parenchyma def: "The distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages" [] is_a: UBERON:0008946 ! lung parenchyma intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0002299 ! alveolus of lung -relationship: BFO:0000050 UBERON:0002299 ! alveolus of lung +intersection_of: BFO:0000050 UBERON:0002299 ! part of alveolus of lung +relationship: BFO:0000050 UBERON:0002299 ! part of alveolus of lung [Term] id: UBERON:0008874 @@ -27597,8 +27596,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004253 ! skin muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0002072 ! hypodermis -relationship: BFO:0000050 UBERON:0002072 ! hypodermis +intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis +relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0008877 @@ -27610,7 +27609,7 @@ synonym: "dermoepidermal junction" EXACT [] synonym: "epidermal dermol junction" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium -relationship: BFO:0000050 UBERON:0000014 ! zone of skin +relationship: BFO:0000050 UBERON:0000014 ! part of zone of skin [Term] id: UBERON:0008883 @@ -27631,9 +27630,9 @@ synonym: "pulmonary circulatory system" EXACT [] synonym: "pulmonary system" EXACT [] is_a: UBERON:0007798 ! vascular system is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system -relationship: BFO:0000051 UBERON:0002012 ! pulmonary artery -relationship: BFO:0000051 UBERON:0002016 ! pulmonary vein +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system +relationship: BFO:0000051 UBERON:0002012 ! has part pulmonary artery +relationship: BFO:0000051 UBERON:0002016 ! has part pulmonary vein [Term] id: UBERON:0008895 @@ -27652,7 +27651,7 @@ synonym: "viscerocranium" EXACT [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system disjoint_from: UBERON:0011156 ! facial skeleton -relationship: RO:0002202 UBERON:0002539 ! pharyngeal arch +relationship: RO:0002202 UBERON:0002539 ! develops_from pharyngeal arch [Term] id: UBERON:0008904 @@ -27666,9 +27665,9 @@ synonym: "neuromaste superficiel@fr" EXACT [] synonym: "neuromasts" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0035555 ! lateral line sense organ -relationship: BFO:0000050 UBERON:0010202 ! lateral line -relationship: RO:0002202 UBERON:0009128 ! lateral line placode -relationship: RO:0002202 UBERON:2005227 ! protoneuromast +relationship: BFO:0000050 UBERON:0010202 ! part of lateral line +relationship: RO:0002202 UBERON:0009128 ! develops_from lateral line placode +relationship: RO:0002202 UBERON:2005227 ! develops_from protoneuromast [Term] id: UBERON:0008906 @@ -27676,8 +27675,8 @@ name: lateral line nerve def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [] synonym: "lateral line nerves" EXACT [] is_a: UBERON:0001785 ! cranial nerve -relationship: BFO:0000050 UBERON:0002540 ! lateral line system -relationship: RO:0002202 UBERON:0009128 ! lateral line placode +relationship: BFO:0000050 UBERON:0002540 ! part of lateral line system +relationship: RO:0002202 UBERON:0009128 ! develops_from lateral line placode [Term] id: UBERON:0008907 @@ -27687,8 +27686,8 @@ synonym: "dermal bones" RELATED [] is_a: UBERON:0004756 ! dermal skeletal element is_a: UBERON:0007842 ! membrane bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0010364 ! dermal skeleton -relationship: BFO:0000050 UBERON:0010364 ! dermal skeleton +intersection_of: BFO:0000050 UBERON:0010364 ! part of dermal skeleton +relationship: BFO:0000050 UBERON:0010364 ! part of dermal skeleton [Term] id: UBERON:0008946 @@ -27700,14 +27699,14 @@ synonym: "respiratory portion of lung" EXACT [] is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0008947 name: respiratory primordium is_a: UBERON:0001048 ! primordium -relationship: BFO:0000050 UBERON:0003258 ! endoderm of foregut +relationship: BFO:0000050 UBERON:0003258 ! part of endoderm of foregut [Term] id: UBERON:0008962 @@ -27718,7 +27717,7 @@ synonym: "wing bone" NARROW [] is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex is_a: UBERON:0015021 ! forelimb endochondral element -relationship: RO:0002202 UBERON:0010883 ! forelimb cartilage element +relationship: RO:0002202 UBERON:0010883 ! develops_from forelimb cartilage element [Term] id: UBERON:0008969 @@ -27729,8 +27728,8 @@ synonym: "tooth follicle" RELATED [] is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0008281 ! tooth bud -relationship: RO:0002202 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0008281 ! part of tooth bud +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0008987 @@ -27740,8 +27739,8 @@ synonym: "kidney parenchyma" RELATED [] synonym: "parenchyma of kidney" EXACT [] is_a: UBERON:0000353 ! parenchyma intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0008989 @@ -27754,8 +27753,8 @@ is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0011148 ! submucosal gland intersection_of: UBERON:0011148 ! submucosal gland -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0008998 @@ -27765,7 +27764,7 @@ synonym: "brain vasculature" EXACT [] synonym: "cerebrovascular system" EXACT [] synonym: "intracerebral vasculature" EXACT [] is_a: UBERON:0006876 ! vasculature of organ -relationship: BFO:0000050 UBERON:0000955 ! brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0009035 @@ -27786,43 +27785,43 @@ synonym: "lymph node light zone" RELATED [] synonym: "lymph node nodule" RELATED [] is_a: UBERON:0010754 ! germinal center intersection_of: UBERON:0010754 ! germinal center -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000050 UBERON:0010753 ! lymph node secondary follicle +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000050 UBERON:0010753 ! part of lymph node secondary follicle [Term] id: UBERON:0009089 name: inner medulla vasa recta descending limb is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004776 ! inner renal medulla vasa recta +relationship: BFO:0000050 UBERON:0004776 ! part of inner renal medulla vasa recta [Term] id: UBERON:0009090 name: outer medulla vasa recta descending limb is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004775 ! outer renal medulla vasa recta +relationship: BFO:0000050 UBERON:0004775 ! part of outer renal medulla vasa recta [Term] id: UBERON:0009091 name: vasa recta ascending limb is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004726 ! vasa recta +relationship: BFO:0000050 UBERON:0004726 ! part of vasa recta [Term] id: UBERON:0009092 name: inner medulla vasa recta ascending limb is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004776 ! inner renal medulla vasa recta +relationship: BFO:0000050 UBERON:0004776 ! part of inner renal medulla vasa recta [Term] id: UBERON:0009093 name: outer medulla vasa recta ascending limb is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004775 ! outer renal medulla vasa recta +relationship: BFO:0000050 UBERON:0004775 ! part of outer renal medulla vasa recta [Term] id: UBERON:0009095 @@ -27831,7 +27830,7 @@ synonym: "papillary tip" EXACT [] synonym: "papillary tips" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0001228 ! renal papilla +relationship: BFO:0000050 UBERON:0001228 ! part of renal papilla [Term] id: UBERON:0009115 @@ -27840,7 +27839,7 @@ def: "A mature thymus that is entirely part of thoracic region." [] is_a: UBERON:0002370 ! thymus is_a: UBERON:0005178 ! thoracic cavity element intersection_of: UBERON:0002370 ! thymus -intersection_of: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk +intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0009117 @@ -27848,7 +27847,7 @@ name: indifferent gonad def: "A gonad prior to differentiating into a definitive testis or ovary." [] synonym: "gonad rudiment" RELATED [] is_a: UBERON:0000991 ! gonad -relationship: BFO:0000050 UBERON:0009196 ! indifferent external genitalia +relationship: BFO:0000050 UBERON:0009196 ! part of indifferent external genitalia [Term] id: UBERON:0009122 @@ -27857,7 +27856,7 @@ def: "The adenohypophyseal placode forms the anterior lobe of the pituitary glan synonym: "pituitary placode" RELATED [] is_a: UBERON:0002546 ! cranial placode is_a: UBERON:0011814 ! non-neurogenic ectodermal placode -relationship: RO:0002202 UBERON:0005497 ! non-neural ectoderm +relationship: RO:0002202 UBERON:0005497 ! develops_from non-neural ectoderm [Term] id: UBERON:0009128 @@ -27876,30 +27875,30 @@ synonym: "head and neck veins" EXACT [] synonym: "vein of head and neck" EXACT [] is_a: UBERON:0013140 ! systemic vein intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0007811 ! craniocervical region -relationship: BFO:0000050 UBERON:0004581 ! systemic venous system -relationship: BFO:0000050 UBERON:0007811 ! craniocervical region +intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region +relationship: BFO:0000050 UBERON:0004581 ! part of systemic venous system +relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0009142 name: entire embryonic mesenchyme def: "Sum total of mesenchyme in the embryo." [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000051 UBERON:0003104 ! mesenchyme +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000051 UBERON:0003104 ! has part mesenchyme [Term] id: UBERON:0009145 name: pharyngeal region of foregut synonym: "pharyngeal region" EXACT [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0001041 ! foregut +relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0009196 name: indifferent external genitalia is_a: UBERON:0004176 ! external genitalia -relationship: BFO:0000050 UBERON:0000922 ! embryo +relationship: BFO:0000050 UBERON:0000922 ! part of embryo [Term] id: UBERON:0009198 @@ -27908,7 +27907,7 @@ def: "Any suture between cranial and/or facial bones." [] synonym: "articulation of skull bones" RELATED [] synonym: "joint of the skull bones" EXACT [] is_a: UBERON:0002209 ! fibrous joint -relationship: BFO:0000050 UBERON:0010323 ! cranial skeletal system +relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system [Term] id: UBERON:0009200 @@ -27917,7 +27916,7 @@ def: "The limb epidermis is the outer epithelial layer of the limb, it is a comp is_a: UBERON:0001003 ! skin epidermis is_a: UBERON:3000981 ! limb external integument structure intersection_of: UBERON:0001003 ! skin epidermis -intersection_of: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0009201 @@ -27935,7 +27934,7 @@ id: UBERON:0009202 name: vasa recta descending limb is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0004726 ! vasa recta +relationship: BFO:0000050 UBERON:0004726 ! part of vasa recta [Term] id: UBERON:0009204 @@ -27944,9 +27943,9 @@ def: "Mesenchyme that is part of a medial nasal prominence." [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0004068 ! medial nasal prominence -relationship: BFO:0000050 UBERON:0004068 ! medial nasal prominence -relationship: RO:0002202 UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: BFO:0000050 UBERON:0004068 ! part of medial nasal prominence +relationship: BFO:0000050 UBERON:0004068 ! part of medial nasal prominence +relationship: RO:0002202 UBERON:0007213 ! develops_from mesenchyme derived from head neural crest [Term] id: UBERON:0009210 @@ -27956,9 +27955,9 @@ synonym: "branchial arch membrane" EXACT [] synonym: "branchial membrane" EXACT [] synonym: "pharyngeal membrane" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0002539 ! pharyngeal arch -relationship: BFO:0000051 UBERON:0000924 ! ectoderm -relationship: BFO:0000051 UBERON:0000925 ! endoderm +relationship: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch +relationship: BFO:0000051 UBERON:0000924 ! has part ectoderm +relationship: BFO:0000051 UBERON:0000925 ! has part endoderm [Term] id: UBERON:0009213 @@ -27969,7 +27968,7 @@ synonym: "1st pharyngeal membrane" EXACT [] synonym: "future tympanic membrane" EXACT [] synonym: "tympanic membrane primordium" EXACT [] is_a: UBERON:0009210 ! pharyngeal membrane -relationship: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 +relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 [Term] id: UBERON:0009292 @@ -27983,8 +27982,8 @@ name: associated mesenchyme of otic placode def: "Mesenchyme that is part of a otic placode." [] is_a: UBERON:0007213 ! mesenchyme derived from head neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003069 ! otic placode -relationship: BFO:0000050 UBERON:0003069 ! otic placode +intersection_of: BFO:0000050 UBERON:0003069 ! part of otic placode +relationship: BFO:0000050 UBERON:0003069 ! part of otic placode [Term] id: UBERON:0009479 @@ -27992,8 +27991,8 @@ name: ectoderm of buccopharyngeal membrane def: "An ectoderm that is part of a buccopharyngeal membrane." [] is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm -intersection_of: BFO:0000050 UBERON:0006211 ! buccopharyngeal membrane -relationship: BFO:0000050 UBERON:0006211 ! buccopharyngeal membrane +intersection_of: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane +relationship: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane [Term] id: UBERON:0009480 @@ -28001,8 +28000,8 @@ name: endoderm of buccopharyngeal membrane def: "An endoderm that is part of a buccopharyngeal membrane." [] is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm -intersection_of: BFO:0000050 UBERON:0006211 ! buccopharyngeal membrane -relationship: BFO:0000050 UBERON:0006211 ! buccopharyngeal membrane +intersection_of: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane +relationship: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane [Term] id: UBERON:0009482 @@ -28010,8 +28009,8 @@ name: associated mesenchyme of foregut-midgut junction def: "Mesenchyme that is part of a foregut-midgut junction." [] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction +intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0009483 @@ -28020,8 +28019,8 @@ def: "A mesentery that is part of a foregut-midgut junction." [] synonym: "foregut-midgut junction mesentery" EXACT [] is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction +intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0009494 @@ -28033,9 +28032,9 @@ is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002539 ! pharyngeal arch -relationship: BFO:0000050 UBERON:0002539 ! pharyngeal arch -relationship: BFO:0000050 UBERON:0010046 ! entire pharyngeal arch associated mesenchyme +intersection_of: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch +relationship: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch +relationship: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme [Term] id: UBERON:0009497 @@ -28045,10 +28044,10 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: BFO:0000050 UBERON:0003929 ! digestive tract epithelium -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: RO:0002202 UBERON:0009550 ! endoderm of foregut-midgut junction +intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: RO:0002202 UBERON:0009550 ! develops_from endoderm of foregut-midgut junction [Term] id: UBERON:0009501 @@ -28058,8 +28057,8 @@ synonym: "frontonasal mesenchyme" EXACT [] synonym: "naso-frontal mesenchyme" EXACT [] is_a: UBERON:0007213 ! mesenchyme derived from head neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0004066 ! frontonasal prominence -relationship: BFO:0000050 UBERON:0004066 ! frontonasal prominence +intersection_of: BFO:0000050 UBERON:0004066 ! part of frontonasal prominence +relationship: BFO:0000050 UBERON:0004066 ! part of frontonasal prominence [Term] id: UBERON:0009503 @@ -28068,8 +28067,8 @@ def: "Mesenchyme that is part of a developing hindgut." [] synonym: "hindgut associated mesenchyme" EXACT [] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001046 ! hindgut -relationship: BFO:0000050 UBERON:0001046 ! hindgut +intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut +relationship: BFO:0000050 UBERON:0001046 ! part of hindgut [Term] id: UBERON:0009505 @@ -28080,9 +28079,9 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0003126 ! trachea -relationship: RO:0002202 UBERON:0002539 ! pharyngeal arch +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: RO:0002202 UBERON:0002539 ! develops_from pharyngeal arch [Term] id: UBERON:0009506 @@ -28094,8 +28093,8 @@ is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001756 ! middle ear -relationship: BFO:0000050 UBERON:0001756 ! middle ear +intersection_of: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear [Term] id: UBERON:0009521 @@ -28104,9 +28103,9 @@ def: "An endoderm that is part of a anal region." [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium -intersection_of: BFO:0000050 UBERON:0001353 ! anal region -intersection_of: RO:0002202 UBERON:0000925 ! endoderm -relationship: BFO:0000050 UBERON:0001353 ! anal region +intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region +intersection_of: RO:0002202 UBERON:0000925 ! develops_from endoderm +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0009523 @@ -28116,9 +28115,9 @@ synonym: "hand plate mesenchyme" EXACT [] synonym: "handplate mesenchyme" EXACT [] is_a: UBERON:0010377 ! mesenchyme from somatopleure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0006875 ! embryonic handplate -relationship: BFO:0000050 UBERON:0006875 ! embryonic handplate -relationship: RO:0002202 UBERON:0003413 ! pectoral appendage bud mesenchyme +intersection_of: BFO:0000050 UBERON:0006875 ! part of embryonic handplate +relationship: BFO:0000050 UBERON:0006875 ! part of embryonic handplate +relationship: RO:0002202 UBERON:0003413 ! develops_from pectoral appendage bud mesenchyme [Term] id: UBERON:0009536 @@ -28127,8 +28126,8 @@ def: "A vascular plexus that is part of a left lung." [] is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus intersection_of: UBERON:0005629 ! vascular plexus -intersection_of: BFO:0000050 UBERON:0002168 ! left lung -relationship: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung +relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0009537 @@ -28137,8 +28136,8 @@ def: "A vascular plexus that is part of a right lung." [] is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus intersection_of: UBERON:0005629 ! vascular plexus -intersection_of: BFO:0000050 UBERON:0002167 ! right lung -relationship: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung +relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0009550 @@ -28146,8 +28145,8 @@ name: endoderm of foregut-midgut junction def: "An endoderm that is part of a foregut-midgut junction." [] is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm -intersection_of: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction +intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0009566 @@ -28156,8 +28155,8 @@ def: "A submucosa that is part of a intestine." [] synonym: "submucosa of intestine" EXACT [] is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0001262 ! wall of intestine +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0009569 @@ -28165,7 +28164,7 @@ name: subdivision of trunk synonym: "region of trunk" EXACT [] synonym: "trunk subdivision" EXACT [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0002100 ! trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0009580 @@ -28174,8 +28173,8 @@ synonym: "diencephalon lateral wall mantle layer" EXACT [] synonym: "mantle layer lateral wall diencephalon" EXACT [] is_a: UBERON:0004061 ! neural tube mantle layer intersection_of: UBERON:0004061 ! neural tube mantle layer -intersection_of: BFO:0000050 UBERON:0006222 ! future diencephalon -relationship: BFO:0000050 UBERON:0006222 ! future diencephalon +intersection_of: BFO:0000050 UBERON:0006222 ! part of future diencephalon +relationship: BFO:0000050 UBERON:0006222 ! part of future diencephalon [Term] id: UBERON:0009581 @@ -28185,8 +28184,8 @@ synonym: "mantle layer lateral wall midbrain" EXACT [] synonym: "midbrain lateral wall mantle layer" EXACT [] is_a: UBERON:0004061 ! neural tube mantle layer intersection_of: UBERON:0004061 ! neural tube mantle layer -intersection_of: BFO:0000050 UBERON:0009616 ! presumptive midbrain -relationship: BFO:0000050 UBERON:0009616 ! presumptive midbrain +intersection_of: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain +relationship: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain [Term] id: UBERON:0009583 @@ -28195,8 +28194,8 @@ synonym: "mantle layer lateral wall spinal cord" EXACT [] synonym: "spinal cord lateral wall mantle layer" EXACT [] is_a: UBERON:0004061 ! neural tube mantle layer intersection_of: UBERON:0004061 ! neural tube mantle layer -intersection_of: BFO:0000050 UBERON:0006241 ! future spinal cord -relationship: BFO:0000050 UBERON:0006241 ! future spinal cord +intersection_of: BFO:0000050 UBERON:0006241 ! part of future spinal cord +relationship: BFO:0000050 UBERON:0006241 ! part of future spinal cord [Term] id: UBERON:0009584 @@ -28208,8 +28207,8 @@ synonym: "mesenchymal region of mandibular component of first pharyngeal arch" E synonym: "mesenchyme of mandibular component" EXACT [] is_a: UBERON:0010042 ! 1st arch mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0007237 ! 1st arch mandibular component -relationship: BFO:0000050 UBERON:0007237 ! 1st arch mandibular component +intersection_of: BFO:0000050 UBERON:0007237 ! part of 1st arch mandibular component +relationship: BFO:0000050 UBERON:0007237 ! part of 1st arch mandibular component [Term] id: UBERON:0009602 @@ -28218,8 +28217,8 @@ def: "Mesenchyme that is part of a developing left lung." [] synonym: "left lung mesenchyme" EXACT [] is_a: UBERON:0004883 ! lung mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002168 ! left lung -relationship: BFO:0000050 UBERON:0002168 ! left lung +intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung +relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0009603 @@ -28228,8 +28227,8 @@ def: "Mesenchyme that is part of a developing right lung." [] synonym: "right lung mesenchyme" EXACT [] is_a: UBERON:0004883 ! lung mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002167 ! right lung -relationship: BFO:0000050 UBERON:0002167 ! right lung +intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung +relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0009610 @@ -28237,9 +28236,9 @@ name: forebrain neural plate def: "A neural plate that develops_from a future forebrain." [] is_a: UBERON:0003075 ! neural plate intersection_of: UBERON:0003075 ! neural plate -intersection_of: RO:0002202 UBERON:0006240 ! future forebrain -relationship: BFO:0000050 UBERON:0003056 ! pre-chordal neural plate -relationship: RO:0002202 UBERON:0006240 ! future forebrain +intersection_of: RO:0002202 UBERON:0006240 ! develops_from future forebrain +relationship: BFO:0000050 UBERON:0003056 ! part of pre-chordal neural plate +relationship: RO:0002202 UBERON:0006240 ! develops_from future forebrain [Term] id: UBERON:0009611 @@ -28247,9 +28246,9 @@ name: midbrain neural plate def: "A neural plate that develops_from a presumptive midbrain." [] is_a: UBERON:0003075 ! neural plate intersection_of: UBERON:0003075 ! neural plate -intersection_of: RO:0002202 UBERON:0009616 ! presumptive midbrain -relationship: BFO:0000050 UBERON:0003056 ! pre-chordal neural plate -relationship: RO:0002202 UBERON:0009616 ! presumptive midbrain +intersection_of: RO:0002202 UBERON:0009616 ! develops_from presumptive midbrain +relationship: BFO:0000050 UBERON:0003056 ! part of pre-chordal neural plate +relationship: RO:0002202 UBERON:0009616 ! develops_from presumptive midbrain [Term] id: UBERON:0009614 @@ -28258,9 +28257,9 @@ def: "A neural plate that develops_from a presumptive hindbrain." [] is_a: UBERON:0003075 ! neural plate is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003075 ! neural plate -intersection_of: RO:0002202 UBERON:0007277 ! presumptive hindbrain -relationship: BFO:0000050 UBERON:0003057 ! chordal neural plate -relationship: RO:0002202 UBERON:0007277 ! presumptive hindbrain +intersection_of: RO:0002202 UBERON:0007277 ! develops_from presumptive hindbrain +relationship: BFO:0000050 UBERON:0003057 ! part of chordal neural plate +relationship: RO:0002202 UBERON:0007277 ! develops_from presumptive hindbrain [Term] id: UBERON:0009615 @@ -28268,8 +28267,8 @@ name: midbrain hindbrain boundary neural plate synonym: "MHB neural plate" EXACT [] synonym: "midbrain-hindbrain boundary neural plate" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0003075 ! neural plate -relationship: RO:0002202 UBERON:0007281 ! presumptive midbrain hindbrain boundary +relationship: BFO:0000050 UBERON:0003075 ! part of neural plate +relationship: RO:0002495 UBERON:0007281 ! immediate transformation of presumptive midbrain hindbrain boundary [Term] id: UBERON:0009616 @@ -28280,8 +28279,8 @@ synonym: "future midbrain" RELATED [] synonym: "mesencephalon" RELATED [] synonym: "presumptive mesencephalon" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0006238 ! future brain -relationship: RO:0002202 UBERON:0010286 ! midbrain neural tube +relationship: BFO:0000050 UBERON:0006238 ! part of future brain +relationship: RO:0002202 UBERON:0010286 ! develops_from midbrain neural tube [Term] id: UBERON:0009617 @@ -28295,8 +28294,8 @@ synonym: "head paraxial mesenchyme" EXACT [] synonym: "somitomere" RELATED [] synonym: "somitomeric mesoderm" RELATED [] is_a: UBERON:0005253 ! head mesenchyme -relationship: BFO:0000050 UBERON:0003077 ! paraxial mesoderm -relationship: BFO:0000050 UBERON:0005253 ! head mesenchyme +relationship: BFO:0000050 UBERON:0003077 ! part of paraxial mesoderm +relationship: BFO:0000050 UBERON:0005253 ! part of head mesenchyme [Term] id: UBERON:0009618 @@ -28304,8 +28303,8 @@ name: trunk paraxial mesoderm synonym: "trunk and cervical paraxial mesenchyme" EXACT [] synonym: "trunk paraxial mesenchyme" RELATED [] is_a: UBERON:0005256 ! trunk mesenchyme -relationship: BFO:0000050 UBERON:0003077 ! paraxial mesoderm -relationship: BFO:0000050 UBERON:0005256 ! trunk mesenchyme +relationship: BFO:0000050 UBERON:0003077 ! part of paraxial mesoderm +relationship: BFO:0000050 UBERON:0005256 ! part of trunk mesenchyme [Term] id: UBERON:0009622 @@ -28315,9 +28314,9 @@ synonym: "proximal straight tubules" RELATED [] is_a: UBERON:0001290 ! proximal straight tubule is_a: UBERON:0005310 ! pronephric nephron tubule intersection_of: UBERON:0001290 ! proximal straight tubule -intersection_of: BFO:0000050 UBERON:0002120 ! pronephros -relationship: BFO:0000050 UBERON:0005309 ! pronephric nephron -relationship: BFO:0000050 UBERON:0006173 ! pronephric proximal tubule +intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros +relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron +relationship: BFO:0000050 UBERON:0006173 ! part of pronephric proximal tubule [Term] id: UBERON:0009644 @@ -28333,7 +28332,7 @@ synonym: "tympanic membrane epithelial layer" EXACT [] is_a: UBERON:0010071 ! layer of tympanic membrane is_a: UBERON:0015813 ! middle ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002364 ! tympanic membrane +intersection_of: BFO:0000050 UBERON:0002364 ! part of tympanic membrane disjoint_from: UBERON:0010070 ! intermediate layer of tympanic membrane [Term] @@ -28344,8 +28343,8 @@ synonym: "superficial fascia of eyelid" RELATED [] is_a: UBERON:0003581 ! eyelid connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003581 ! eyelid connective tissue -intersection_of: BFO:0000050 UBERON:0002072 ! hypodermis -relationship: BFO:0000050 UBERON:0002072 ! hypodermis +intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis +relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0009651 @@ -28356,9 +28355,9 @@ synonym: "renal tubular basement membrane" EXACT [] synonym: "renal tubule basement membrane" EXACT [] is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium -intersection_of: BFO:0000050 UBERON:0001231 ! nephron tubule -relationship: BFO:0000050 UBERON:0001231 ! nephron tubule -relationship: BFO:0000050 UBERON:0004810 ! nephron tubule epithelium +intersection_of: BFO:0000050 UBERON:0001231 ! part of nephron tubule +relationship: BFO:0000050 UBERON:0001231 ! part of nephron tubule +relationship: BFO:0000050 UBERON:0004810 ! part of nephron tubule epithelium [Term] id: UBERON:0009652 @@ -28368,8 +28367,8 @@ synonym: "bronchial basement membrane" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002031 ! epithelium of bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002031 ! part of epithelium of bronchus [Term] id: UBERON:0009653 @@ -28379,9 +28378,9 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium -intersection_of: BFO:0000050 UBERON:0003126 ! trachea -relationship: BFO:0000050 UBERON:0001901 ! epithelium of trachea -relationship: BFO:0000050 UBERON:0009644 ! trachea non-cartilage connective tissue +intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea +relationship: BFO:0000050 UBERON:0001901 ! part of epithelium of trachea +relationship: BFO:0000050 UBERON:0009644 ! part of trachea non-cartilage connective tissue [Term] id: UBERON:0009661 @@ -28389,8 +28388,8 @@ name: midbrain nucleus def: "Nucleus located in the midbrain." [] is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0001891 ! midbrain -relationship: BFO:0000050 UBERON:0001891 ! midbrain +intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain +relationship: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0009662 @@ -28398,8 +28397,8 @@ name: hindbrain nucleus def: "Nucleus located within the hindbrain." [] is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0009663 @@ -28407,8 +28406,8 @@ name: telencephalic nucleus def: "A nucleus of brain that is part of a telencephalon." [] is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0009664 @@ -28423,8 +28422,8 @@ name: early telencephalic vesicle synonym: "early telencephalic ventricle" RELATED [] synonym: "early telencephalic vesicle" EXACT [] is_a: UBERON:0013150 ! future brain vesicle -relationship: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: RO:0002202 UBERON:0006284 ! early prosencephalic vesicle +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: RO:0002202 UBERON:0006284 ! develops_from early prosencephalic vesicle [Term] id: UBERON:0009678 @@ -28447,8 +28446,8 @@ synonym: "mandibular dental arcade" RELATED [] synonym: "set of all lower teeth" EXACT [] is_a: UBERON:0009678 ! tooth row intersection_of: UBERON:0009678 ! tooth row -intersection_of: BFO:0000050 UBERON:0003278 ! skeleton of lower jaw -relationship: BFO:0000050 UBERON:0003278 ! skeleton of lower jaw +intersection_of: BFO:0000050 UBERON:0003278 ! part of skeleton of lower jaw +relationship: BFO:0000050 UBERON:0003278 ! part of skeleton of lower jaw [Term] id: UBERON:0009697 @@ -28458,10 +28457,10 @@ synonym: "appendix epithelium" EXACT [] synonym: "epithelium of vermiform appendix" EXACT [] is_a: UBERON:0005636 ! caecum epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001154 ! vermiform appendix -relationship: BFO:0000050 UBERON:0003929 ! digestive tract epithelium -relationship: BFO:0000050 UBERON:0004989 ! mucosa of appendix -relationship: RO:0002202 UBERON:0005636 ! caecum epithelium +intersection_of: BFO:0000050 UBERON:0001154 ! part of vermiform appendix +relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium +relationship: BFO:0000050 UBERON:0004989 ! part of mucosa of appendix +relationship: RO:0002202 UBERON:0005636 ! develops_from caecum epithelium [Term] id: UBERON:0009712 @@ -28474,9 +28473,9 @@ synonym: "right ventricular endocardium" EXACT [] is_a: UBERON:0001081 ! endocardium of ventricle is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001081 ! endocardium of ventricle -intersection_of: BFO:0000050 UBERON:0002080 ! heart right ventricle -relationship: BFO:0000050 UBERON:0002080 ! heart right ventricle -relationship: RO:0002202 UBERON:0004706 ! bulbus cordis +intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle +relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle +relationship: RO:0002202 UBERON:0004706 ! develops_from bulbus cordis [Term] id: UBERON:0009713 @@ -28488,8 +28487,8 @@ synonym: "left ventricle endocardium" EXACT [] synonym: "left ventricular endocardium" EXACT [] is_a: UBERON:0001081 ! endocardium of ventricle intersection_of: UBERON:0001081 ! endocardium of ventricle -intersection_of: BFO:0000050 UBERON:0002084 ! heart left ventricle -relationship: BFO:0000050 UBERON:0002084 ! heart left ventricle +intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle +relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0009722 @@ -28498,9 +28497,9 @@ synonym: "pharyngeal arch endoderm" RELATED [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015833 ! foregut epithelium -relationship: BFO:0000050 UBERON:0003929 ! digestive tract epithelium -relationship: BFO:0000050 UBERON:0008814 ! pharyngeal arch system -relationship: RO:0002202 UBERON:0000925 ! endoderm +relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium +relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system +relationship: RO:0002202 UBERON:0000925 ! develops_from endoderm [Term] id: UBERON:0009744 @@ -28509,7 +28508,7 @@ def: "The channels in the lymph node medulla that separate the medullary cords a synonym: "lymph node medullary sinusoid" RELATED [] synonym: "medullary sinus" BROAD [] is_a: UBERON:0004111 ! anatomical conduit -relationship: BFO:0000050 UBERON:0002007 ! medulla of lymph node +relationship: BFO:0000050 UBERON:0002007 ! part of medulla of lymph node [Term] id: UBERON:0009745 @@ -28517,7 +28516,7 @@ name: lymph node medullary cord def: "The dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node" [] synonym: "medullary cord" BROAD [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0002007 ! medulla of lymph node +relationship: BFO:0000050 UBERON:0002007 ! part of medulla of lymph node [Term] id: UBERON:0009749 @@ -28526,8 +28525,8 @@ def: "The primordial embryonic connective tissue of the developing limbs, autopo synonym: "limb mesoderm" RELATED [] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0009751 @@ -28537,8 +28536,8 @@ synonym: "heart mesenchyme" EXACT [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0009752 @@ -28546,8 +28545,8 @@ name: pancreas mesenchyme def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas" [] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000050 UBERON:0001264 ! pancreas +intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0009753 @@ -28557,7 +28556,7 @@ synonym: "region of adrenal cortex" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0001235 ! adrenal cortex +relationship: BFO:0000050 UBERON:0001235 ! part of adrenal cortex [Term] id: UBERON:0009758 @@ -28566,7 +28565,7 @@ def: "A ganglion that is part of a abdominal segment of trunk." [] is_a: UBERON:0005173 ! abdominal segment element is_a: UBERON:0007134 ! trunk ganglion intersection_of: UBERON:0000045 ! ganglion -intersection_of: BFO:0000050 UBERON:0002417 ! abdominal segment of trunk +intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0009773 @@ -28585,12 +28584,12 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005906 ! serous sac is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0005906 ! serous sac -intersection_of: BFO:0000051 UBERON:0000977 ! pleura -intersection_of: BFO:0000051 UBERON:0002402 ! pleural cavity -relationship: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001558 ! lower respiratory tract -relationship: BFO:0000051 UBERON:0000977 ! pleura -relationship: BFO:0000051 UBERON:0002402 ! pleural cavity +intersection_of: BFO:0000051 UBERON:0000977 ! has part pleura +intersection_of: BFO:0000051 UBERON:0002402 ! has part pleural cavity +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract +relationship: BFO:0000051 UBERON:0000977 ! has part pleura +relationship: BFO:0000051 UBERON:0002402 ! has part pleural cavity [Term] id: UBERON:0009842 @@ -28599,7 +28598,7 @@ def: "The many-lobed berry cluster of cells that is the terminous of a gland whe synonym: "acini" RELATED [] synonym: "acinus" BROAD [] is_a: UBERON:0034922 ! cell cluster -relationship: BFO:0000050 UBERON:0002530 ! gland +relationship: BFO:0000050 UBERON:0002530 ! part of gland [Term] id: UBERON:0009843 @@ -28626,10 +28625,10 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0009521 ! anal membrane endodermal component is_a: UBERON:0012481 ! cloacal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000163 ! embryonic cloaca -relationship: BFO:0000050 UBERON:0000163 ! embryonic cloaca -relationship: BFO:0000050 UBERON:0003929 ! digestive tract epithelium -relationship: RO:0002202 UBERON:0003353 ! epithelium of hindgut +intersection_of: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca +relationship: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca +relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium +relationship: RO:0002202 UBERON:0003353 ! develops_from epithelium of hindgut [Term] id: UBERON:0009847 @@ -28640,7 +28639,7 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007688 ! anlage -relationship: BFO:0000050 UBERON:0004902 ! urogenital sinus epithelium +relationship: BFO:0000050 UBERON:0004902 ! part of urogenital sinus epithelium [Term] id: UBERON:0009854 @@ -28651,7 +28650,7 @@ synonym: "intestinal pouch" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! sac intersection_of: UBERON:0009856 ! sac -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0009856 @@ -28665,8 +28664,8 @@ id: UBERON:0009859 name: endosteum def: "A thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones" [] is_a: UBERON:0000158 ! membranous layer -relationship: BFO:0000050 UBERON:0002495 ! long bone -relationship: BFO:0000051 UBERON:0011825 ! loose connective tissue +relationship: BFO:0000050 UBERON:0002495 ! part of long bone +relationship: BFO:0000051 UBERON:0011825 ! has part loose connective tissue [Term] id: UBERON:0009870 @@ -28677,8 +28676,8 @@ synonym: "region of stomach" EXACT [] synonym: "section of stomach" EXACT [] is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ -intersection_of: BFO:0000050 UBERON:0000945 ! stomach -relationship: BFO:0000050 UBERON:0000945 ! stomach +intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach +relationship: BFO:0000050 UBERON:0000945 ! part of stomach [Term] id: UBERON:0009871 @@ -28686,7 +28685,7 @@ name: nephrogenic zone def: "outer portion of the renal cortex. Site of formation of medullary and cortical elements." [] synonym: "nephrogenic tissue" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0009881 @@ -28695,7 +28694,7 @@ synonym: "ALPM" EXACT [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0009882 @@ -28705,7 +28704,7 @@ synonym: "column of Morgagni" EXACT [] synonym: "columnae anales" RELATED [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ -relationship: BFO:0000050 UBERON:0000159 ! anal canal +relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0009883 @@ -28715,7 +28714,7 @@ synonym: "Ferrein's pyramid" EXACT [] synonym: "kidney medullary ray" EXACT [] synonym: "renal medullary ray" EXACT [] is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0001225 ! cortex of kidney +relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney [Term] id: UBERON:0009885 @@ -28742,7 +28741,7 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage -relationship: BFO:0000050 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0009891 @@ -28752,8 +28751,8 @@ synonym: "face mesenchyme" EXACT [] synonym: "mesenchyme of face" EXACT [] is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0001456 ! face +intersection_of: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:0009911 @@ -28778,8 +28777,8 @@ synonym: "lobi renalis" EXACT [] synonym: "lobus renalis" EXACT [] is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0009914 @@ -28797,10 +28796,10 @@ synonym: "reniculus" RELATED [] synonym: "renunculus" RELATED [] is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule -intersection_of: BFO:0000050 UBERON:0002113 ! kidney -relationship: BFO:0000050 UBERON:0009913 ! renal lobe -relationship: BFO:0000051 UBERON:0001285 ! nephron -relationship: BFO:0000051 UBERON:0009883 ! medullary ray +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney +relationship: BFO:0000050 UBERON:0009913 ! part of renal lobe +relationship: BFO:0000051 UBERON:0001285 ! has part nephron +relationship: BFO:0000051 UBERON:0009883 ! has part medullary ray [Term] id: UBERON:0009916 @@ -28810,10 +28809,10 @@ synonym: "ureteral wall" EXACT [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000051 UBERON:0005742 ! adventitia -relationship: BFO:0000051 UBERON:0006660 ! muscular coat +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000051 UBERON:0005742 ! has part adventitia +relationship: BFO:0000051 UBERON:0006660 ! has part muscular coat [Term] id: UBERON:0009918 @@ -28821,7 +28820,7 @@ name: retrotrapezoid nucleus def: "The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain" [] is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata -relationship: BFO:0000050 UBERON:0001896 ! medulla oblongata +relationship: BFO:0000050 UBERON:0001896 ! part of medulla oblongata [Term] id: UBERON:0009919 @@ -28831,15 +28830,15 @@ synonym: "ureteral smooth muscle" EXACT [] synonym: "ureteral smooth muscle layer" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0000056 ! ureter -relationship: BFO:0000050 UBERON:0006855 ! muscular coat of ureter +intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter +relationship: BFO:0000050 UBERON:0006855 ! part of muscular coat of ureter [Term] id: UBERON:0009920 name: optic neural crest is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007530 ! migrating mesenchyme population -relationship: BFO:0000050 UBERON:0007213 ! mesenchyme derived from head neural crest +relationship: BFO:0000050 UBERON:0007213 ! part of mesenchyme derived from head neural crest [Term] id: UBERON:0009950 @@ -28852,7 +28851,7 @@ id: UBERON:0009954 name: vomeronasal system def: "A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" [] is_a: UBERON:0001032 ! sensory system -relationship: BFO:0000050 UBERON:0005725 ! olfactory system +relationship: BFO:0000050 UBERON:0005725 ! part of olfactory system [Term] id: UBERON:0009955 @@ -28862,7 +28861,7 @@ synonym: "neurogenic placodes" EXACT [] synonym: "placodae neurogenicae" RELATED [] is_a: UBERON:0002546 ! cranial placode disjoint_from: UBERON:0011814 ! non-neurogenic ectodermal placode -relationship: RO:0002202 UBERON:2007013 ! preplacodal ectoderm +relationship: RO:0002202 UBERON:2007013 ! develops_from preplacodal ectoderm [Term] id: UBERON:0009966 @@ -28874,7 +28873,7 @@ synonym: "internodal fasciculus" EXACT [] synonym: "internodal tract muscle tissue" EXACT [] is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart -relationship: BFO:0000050 UBERON:0002350 ! conducting system of heart +relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart [Term] id: UBERON:0009967 @@ -28885,7 +28884,7 @@ synonym: "splenic sinus" EXACT [] synonym: "venous sinus of red pulp of spleen" EXACT [] is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0006615 ! venous sinus -relationship: BFO:0000050 UBERON:0001250 ! red pulp of spleen +relationship: BFO:0000050 UBERON:0001250 ! part of red pulp of spleen [Term] id: UBERON:0009969 @@ -28903,9 +28902,9 @@ is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0013697 ! exocrine pancreas epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0007329 ! pancreatic duct -relationship: BFO:0000050 UBERON:0007329 ! pancreatic duct -relationship: RO:0002202 UBERON:0000924 ! ectoderm +intersection_of: BFO:0000050 UBERON:0007329 ! part of pancreatic duct +relationship: BFO:0000050 UBERON:0007329 ! part of pancreatic duct +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0009971 @@ -28942,8 +28941,8 @@ name: aggregate regional part of brain def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [] synonym: "set of nuclei of neuraxis" RELATED [] is_a: UBERON:0034923 ! disconnected anatomical group -relationship: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000051 UBERON:0002616 ! regional part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000051 UBERON:0002616 ! has part regional part of brain [Term] id: UBERON:0010011 @@ -28958,7 +28957,7 @@ synonym: "set of basal ganglia" EXACT [] synonym: "set of basal nuclei" RELATED [] synonym: "subcortical nuclei" RELATED [] is_a: UBERON:0010009 ! aggregate regional part of brain -relationship: BFO:0000050 UBERON:0000454 ! cerebral subcortex +relationship: BFO:0000050 UBERON:0000454 ! part of cerebral subcortex [Term] id: UBERON:0010020 @@ -28969,8 +28968,8 @@ is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0015813 ! middle ear epithelium -relationship: BFO:0000050 UBERON:0001756 ! middle ear -relationship: RO:0002202 UBERON:0007122 ! pharyngeal pouch 1 +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: RO:0002202 UBERON:0007122 ! develops_from pharyngeal pouch 1 [Term] id: UBERON:0010031 @@ -28981,8 +28980,8 @@ synonym: "6th pharyngeal arch mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme" RELATED [] is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0003117 ! pharyngeal arch 6 -relationship: BFO:0000050 UBERON:0003117 ! pharyngeal arch 6 +intersection_of: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 +relationship: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 [Term] id: UBERON:0010038 @@ -28997,16 +28996,16 @@ synonym: "glandulae gastricae" RELATED [] is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000325 ! gastric gland -intersection_of: BFO:0000050 UBERON:0001160 ! fundus of stomach -relationship: BFO:0000050 UBERON:0004994 ! mucosa of fundus of stomach +intersection_of: BFO:0000050 UBERON:0001160 ! part of fundus of stomach +relationship: BFO:0000050 UBERON:0004994 ! part of mucosa of fundus of stomach [Term] id: UBERON:0010039 name: food storage organ def: "An organ of the digestive tract that is capable of retaining and storing food" [] is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0010042 @@ -29015,8 +29014,8 @@ def: "Mesenchyme that is part of a pharyngeal arch 1." [] synonym: "mesenchyme of 1st arch" EXACT [] is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 -relationship: BFO:0000050 UBERON:0004362 ! pharyngeal arch 1 +intersection_of: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 +relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 [Term] id: UBERON:0010045 @@ -29027,8 +29026,8 @@ synonym: "maxillary mesenchyme" RELATED [] synonym: "mesenchyme of maxillary component" EXACT [] is_a: UBERON:0010042 ! 1st arch mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0007238 ! 1st arch maxillary component -relationship: BFO:0000050 UBERON:0007238 ! 1st arch maxillary component +intersection_of: BFO:0000050 UBERON:0007238 ! part of 1st arch maxillary component +relationship: BFO:0000050 UBERON:0007238 ! part of 1st arch maxillary component [Term] id: UBERON:0010046 @@ -29040,7 +29039,7 @@ synonym: "pharyngeal arch associated mesenchyme" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0008814 ! pharyngeal arch system +relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system [Term] id: UBERON:0010047 @@ -29055,8 +29054,8 @@ synonym: "oral region gland" RELATED [] is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000165 ! mouth -relationship: BFO:0000050 UBERON:0000165 ! mouth +intersection_of: BFO:0000050 UBERON:0000165 ! part of mouth +relationship: BFO:0000050 UBERON:0000165 ! part of mouth [Term] id: UBERON:0010056 @@ -29065,13 +29064,13 @@ def: "A compound organ that has the potential to develop into a tongue." [] is_a: UBERON:0003103 ! compound organ is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0013765 ! digestive system element -relationship: BFO:0000050 UBERON:0000165 ! mouth +relationship: BFO:0000050 UBERON:0000165 ! part of mouth [Term] id: UBERON:0010059 name: hypoglossal cord is_a: UBERON:0002036 ! striated muscle tissue -relationship: BFO:0000050 UBERON:0010056 ! future tongue +relationship: BFO:0000050 UBERON:0010056 ! part of future tongue [Term] id: UBERON:0010063 @@ -29080,8 +29079,8 @@ is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015813 ! middle ear epithelium -relationship: BFO:0000050 UBERON:0001756 ! middle ear -relationship: RO:0002202 UBERON:0010020 ! tubotympanic recess epithelium +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: RO:0002202 UBERON:0010020 ! develops_from tubotympanic recess epithelium [Term] id: UBERON:0010064 @@ -29103,8 +29102,8 @@ is_a: UBERON:0009647 ! tympanic membrane epithelium is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015814 ! outer ear epithelium intersection_of: UBERON:0009647 ! tympanic membrane epithelium -intersection_of: BFO:0000050 UBERON:0001352 ! external acoustic meatus -relationship: BFO:0000050 UBERON:0001352 ! external acoustic meatus +intersection_of: BFO:0000050 UBERON:0001352 ! part of external acoustic meatus +relationship: BFO:0000050 UBERON:0001352 ! part of external acoustic meatus [Term] id: UBERON:0010070 @@ -29123,7 +29122,7 @@ name: layer of tympanic membrane synonym: "tympanic membrane layer" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002364 ! tympanic membrane +relationship: BFO:0000050 UBERON:0002364 ! part of tympanic membrane [Term] id: UBERON:0010074 @@ -29133,8 +29132,8 @@ synonym: "argentaffin system" RELATED [] synonym: "chromaffin tissue" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0000949 ! endocrine system -relationship: RO:0002202 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0010077 @@ -29147,9 +29146,9 @@ id: UBERON:0010083 name: future dermis def: "Mesenchyme that has the potential to develop into a dermis." [] is_a: UBERON:0003104 ! mesenchyme -relationship: BFO:0000050 UBERON:0002199 ! integument -relationship: RO:0002202 UBERON:0003089 ! sclerotome -relationship: RO:0002202 UBERON:0004016 ! dermatome +relationship: BFO:0000050 UBERON:0002199 ! part of integument +relationship: RO:0002202 UBERON:0003089 ! develops_from sclerotome +relationship: RO:0002202 UBERON:0004016 ! develops_from dermatome [Term] id: UBERON:0010091 @@ -29161,21 +29160,21 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0007645 ! future meninx is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0010092 name: future metencephalon def: "A developing anatomical structure that has the potential to develop into a metencephalon." [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0010096 name: future myelencephalon def: "A developing anatomical structure that has the potential to develop into a myelencephalon." [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0010129 @@ -29186,8 +29185,8 @@ is_a: UBERON:0005254 ! upper leg mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015052 ! femur endochondral element -relationship: BFO:0000050 UBERON:0005254 ! upper leg mesenchyme -relationship: RO:0002202 UBERON:0006234 ! femur pre-cartilage condensation +relationship: BFO:0000050 UBERON:0005254 ! part of upper leg mesenchyme +relationship: RO:0002202 UBERON:0006234 ! develops_from femur pre-cartilage condensation [Term] id: UBERON:0010130 @@ -29196,7 +29195,7 @@ def: "The distal elements of the developing limb of vertebrates that will give r synonym: "autopod plate" EXACT [] synonym: "limb plate" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: RO:0002202 UBERON:0004347 ! limb bud +relationship: RO:0002202 UBERON:0004347 ! develops_from limb bud [Term] id: UBERON:0010131 @@ -29212,8 +29211,8 @@ name: neuroendocrine gland def: "any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli" [] is_a: UBERON:0002368 ! endocrine gland intersection_of: UBERON:0002368 ! endocrine gland -intersection_of: BFO:0000050 UBERON:0001016 ! nervous system -relationship: BFO:0000050 UBERON:0001016 ! nervous system +intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0010134 @@ -29222,7 +29221,7 @@ def: "A circumventricular organ that is capable of secreting substances into the is_a: UBERON:0005408 ! circumventricular organ is_a: UBERON:0010133 ! neuroendocrine gland intersection_of: UBERON:0005408 ! circumventricular organ -intersection_of: BFO:0000050 UBERON:0000949 ! endocrine system +intersection_of: BFO:0000050 UBERON:0000949 ! part of endocrine system [Term] id: UBERON:0010135 @@ -29237,8 +29236,8 @@ synonym: "sensory circumventricular organs" RELATED [] synonym: "sensory CVOs" RELATED [] is_a: UBERON:0005408 ! circumventricular organ intersection_of: UBERON:0005408 ! circumventricular organ -intersection_of: BFO:0000050 UBERON:0001032 ! sensory system -relationship: BFO:0000050 UBERON:0001032 ! sensory system +intersection_of: BFO:0000050 UBERON:0001032 ! part of sensory system +relationship: BFO:0000050 UBERON:0001032 ! part of sensory system [Term] id: UBERON:0010141 @@ -29249,9 +29248,9 @@ synonym: "primitive sex cords" EXACT [] is_a: UBERON:0004909 ! epithelium of gonad is_a: UBERON:0005295 ! sex cord intersection_of: UBERON:0005295 ! sex cord -intersection_of: BFO:0000050 UBERON:0009117 ! indifferent gonad -relationship: BFO:0000050 UBERON:0009117 ! indifferent gonad -relationship: RO:0002202 UBERON:0005891 ! coelomic epithelium +intersection_of: BFO:0000050 UBERON:0009117 ! part of indifferent gonad +relationship: BFO:0000050 UBERON:0009117 ! part of indifferent gonad +relationship: RO:0002202 UBERON:0005891 ! develops_from coelomic epithelium [Term] id: UBERON:0010147 @@ -29271,8 +29270,8 @@ synonym: "facial hair" RELATED [] synonym: "hair of face" EXACT [] is_a: UBERON:0016446 ! hair of head intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0001456 ! face +intersection_of: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:0010186 @@ -29286,8 +29285,8 @@ synonym: "male urethra gland" EXACT [] synonym: "urethral gland (male)" EXACT [] is_a: UBERON:0001338 ! urethral gland intersection_of: UBERON:0001338 ! urethral gland -intersection_of: BFO:0000050 UBERON:0001333 ! male urethra -relationship: BFO:0000050 UBERON:0001333 ! male urethra +intersection_of: BFO:0000050 UBERON:0001333 ! part of male urethra +relationship: BFO:0000050 UBERON:0001333 ! part of male urethra [Term] id: UBERON:0010187 @@ -29298,8 +29297,8 @@ synonym: "gland of female urethra" EXACT [] synonym: "urethral gland (female)" EXACT [] is_a: UBERON:0001338 ! urethral gland intersection_of: UBERON:0001338 ! urethral gland -intersection_of: BFO:0000050 UBERON:0001334 ! female urethra -relationship: BFO:0000050 UBERON:0001334 ! female urethra +intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra +relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0010188 @@ -29313,14 +29312,14 @@ name: pair of dorsal aortae def: "the paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation" [] synonym: "paired dorsal aortae" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0010191 ! aortic system -relationship: BFO:0000051 UBERON:0005805 ! dorsal aorta +relationship: BFO:0000050 UBERON:0010191 ! part of aortic system +relationship: BFO:0000051 UBERON:0005805 ! has part dorsal aorta [Term] id: UBERON:0010191 name: aortic system is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0004571 ! systemic arterial system +relationship: BFO:0000050 UBERON:0004571 ! part of systemic arterial system [Term] id: UBERON:0010202 @@ -29329,8 +29328,8 @@ def: "The lateral line consists of small sensory patches (neuromasts) located su synonym: "lateral lines" EXACT [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0002540 ! lateral line system -relationship: RO:0002202 UBERON:0009128 ! lateral line placode +relationship: BFO:0000050 UBERON:0002540 ! part of lateral line system +relationship: RO:0002202 UBERON:0009128 ! develops_from lateral line placode [Term] id: UBERON:0010225 @@ -29338,7 +29337,7 @@ name: thalamic complex def: "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]." [] is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019269 ! gray matter of diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0010227 @@ -29348,7 +29347,7 @@ synonym: "presumptive atrium heart tube" EXACT [] synonym: "primordial atrium" EXACT [] synonym: "primordial cardiac atrium" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0004141 ! heart tube +relationship: BFO:0000050 UBERON:0004141 ! part of heart tube [Term] id: UBERON:0010230 @@ -29361,7 +29360,7 @@ synonym: "eyeball" EXACT [] synonym: "globe" RELATED [] is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0010233 @@ -29373,9 +29372,9 @@ is_a: UBERON:0003891 ! stroma is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0010243 @@ -29390,11 +29389,11 @@ def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch man is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010259 ! 1st arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0009584 ! 1st arch mandibular mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0009584 ! 1st arch mandibular mesenchyme -relationship: BFO:0000050 UBERON:0010258 ! mesenchyme from rhombencephalic neural crest -relationship: RO:0002202 UBERON:0007098 ! mandibular neural crest +intersection_of: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme +relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest +relationship: RO:0002202 UBERON:0007098 ! develops_from mandibular neural crest [Term] id: UBERON:0010253 @@ -29404,10 +29403,10 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme is_a: UBERON:0010259 ! 1st arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010045 ! 1st arch maxillary mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0010045 ! 1st arch maxillary mesenchyme -relationship: BFO:0000050 UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +intersection_of: BFO:0000050 UBERON:0010045 ! part of 1st arch maxillary mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0010045 ! part of 1st arch maxillary mesenchyme +relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010254 @@ -29421,11 +29420,11 @@ is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005689 ! 2nd arch mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0005689 ! 2nd arch mesenchyme -relationship: BFO:0000050 UBERON:0010258 ! mesenchyme from rhombencephalic neural crest -relationship: RO:0002202 UBERON:0007099 ! hyoid neural crest +intersection_of: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme +relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest +relationship: RO:0002202 UBERON:0007099 ! develops_from hyoid neural crest [Term] id: UBERON:0010255 @@ -29441,10 +29440,10 @@ is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005690 ! 3rd arch mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0005690 ! 3rd arch mesenchyme -relationship: RO:0002202 UBERON:0003852 ! rhombencephalon neural crest +intersection_of: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme +relationship: RO:0002202 UBERON:0003852 ! develops_from rhombencephalon neural crest [Term] id: UBERON:0010257 @@ -29458,11 +29457,11 @@ is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010031 ! 6th arch mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0010031 ! 6th arch mesenchyme -relationship: BFO:0000050 UBERON:0010258 ! mesenchyme from rhombencephalic neural crest -relationship: RO:0002202 UBERON:0003852 ! rhombencephalon neural crest +intersection_of: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme +relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest +relationship: RO:0002202 UBERON:0003852 ! develops_from rhombencephalon neural crest [Term] id: UBERON:0010258 @@ -29470,9 +29469,9 @@ name: mesenchyme from rhombencephalic neural crest def: "Mesenchyme that develops_from a rhombencephalon neural crest." [] is_a: UBERON:0007213 ! mesenchyme derived from head neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: RO:0002202 UBERON:0003852 ! rhombencephalon neural crest -relationship: BFO:0000050 UBERON:0007213 ! mesenchyme derived from head neural crest -relationship: RO:0002202 UBERON:0003852 ! rhombencephalon neural crest +intersection_of: RO:0002202 UBERON:0003852 ! develops_from rhombencephalon neural crest +relationship: BFO:0000050 UBERON:0007213 ! part of mesenchyme derived from head neural crest +relationship: RO:0002202 UBERON:0003852 ! develops_from rhombencephalon neural crest [Term] id: UBERON:0010259 @@ -29486,9 +29485,9 @@ is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010042 ! 1st arch mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: RO:0002202 UBERON:0003852 ! rhombencephalon neural crest +intersection_of: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: RO:0002202 UBERON:0003852 ! develops_from rhombencephalon neural crest [Term] id: UBERON:0010260 @@ -29509,8 +29508,8 @@ synonym: "vertebral column opening" EXACT [] synonym: "vertebral conduit" EXACT [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space -intersection_of: BFO:0000050 UBERON:0001130 ! vertebral column -relationship: BFO:0000050 UBERON:0001130 ! vertebral column +intersection_of: BFO:0000050 UBERON:0001130 ! part of vertebral column +relationship: BFO:0000050 UBERON:0001130 ! part of vertebral column [Term] id: UBERON:0010285 @@ -29519,8 +29518,8 @@ def: "Portion of tissue that is dorsolateral to the floor plate and part of the synonym: "basal plate midbrain" EXACT [] synonym: "basal plate midbrain region" EXACT [] is_a: UBERON:0002020 ! gray matter -relationship: BFO:0000050 UBERON:0009581 ! midbrain mantle layer -relationship: BFO:0000050 UBERON:0010286 ! midbrain neural tube +relationship: BFO:0000050 UBERON:0009581 ! part of midbrain mantle layer +relationship: BFO:0000050 UBERON:0010286 ! part of midbrain neural tube [Term] id: UBERON:0010286 @@ -29529,7 +29528,7 @@ def: "Portion of neural tube that gives rise to the midbrain." [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -relationship: BFO:0000050 UBERON:0003080 ! anterior neural tube +relationship: BFO:0000050 UBERON:0003080 ! part of anterior neural tube [Term] id: UBERON:0010291 @@ -29537,7 +29536,7 @@ name: layer of sclera def: "." [] is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010313 ! neural crest-derived structure -relationship: BFO:0000050 UBERON:0001773 ! sclera +relationship: BFO:0000050 UBERON:0001773 ! part of sclera [Term] id: UBERON:0010294 @@ -29547,7 +29546,7 @@ is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010291 ! layer of sclera is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001773 ! sclera +intersection_of: BFO:0000050 UBERON:0001773 ! part of sclera [Term] id: UBERON:0010295 @@ -29561,7 +29560,7 @@ synonym: "substantia propria sclerae" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0010291 ! layer of sclera intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0001773 ! sclera +intersection_of: BFO:0000050 UBERON:0001773 ! part of sclera [Term] id: UBERON:0010302 @@ -29578,8 +29577,8 @@ synonym: "extra-embryonic epithelium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000478 ! extraembryonic structure -relationship: BFO:0000050 UBERON:0000478 ! extraembryonic structure +intersection_of: BFO:0000050 UBERON:0000478 ! part of extraembryonic structure +relationship: BFO:0000050 UBERON:0000478 ! part of extraembryonic structure [Term] id: UBERON:0010304 @@ -29597,7 +29596,7 @@ name: immature eye def: "Developing anatomical structure that develops into the eyeball and associated structures." [] synonym: "future eye" EXACT [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: RO:0002202 UBERON:0003071 ! eye primordium +relationship: RO:0002202 UBERON:0003071 ! develops_from eye primordium [Term] id: UBERON:0010313 @@ -29606,8 +29605,8 @@ def: "An anatomical structure that develops from the neural crest." [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000061 ! anatomical structure -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0010314 @@ -29621,7 +29620,7 @@ name: germ layer / neural crest is_a: UBERON:0000479 ! tissue is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue -relationship: RO:0002202 UBERON:0002532 ! epiblast (generic) +relationship: RO:0002202 UBERON:0002532 ! develops_from epiblast (generic) [Term] id: UBERON:0010321 @@ -29633,10 +29632,10 @@ synonym: "skeletal element of orbital region" RELATED [] is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004765 ! skeletal element -intersection_of: BFO:0000050 UBERON:0004088 ! orbital region -relationship: BFO:0000050 UBERON:0004088 ! orbital region -relationship: BFO:0000050 UBERON:0011156 ! facial skeleton -relationship: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: BFO:0000050 UBERON:0004088 ! part of orbital region +relationship: BFO:0000050 UBERON:0004088 ! part of orbital region +relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0010323 @@ -29646,7 +29645,7 @@ synonym: "cranial skeleton" NARROW [] synonym: "cranium" RELATED [] synonym: "osteocranium" NARROW [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0011137 ! axial skeletal system +relationship: BFO:0000050 UBERON:0011137 ! part of axial skeletal system [Term] id: UBERON:0010328 @@ -29654,8 +29653,8 @@ name: limb bud mesenchyme def: "Mesenchyme that is part of a limb bud." [] is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0004347 ! limb bud -relationship: BFO:0000050 UBERON:0004347 ! limb bud +intersection_of: BFO:0000050 UBERON:0004347 ! part of limb bud +relationship: BFO:0000050 UBERON:0004347 ! part of limb bud [Term] id: UBERON:0010329 @@ -29663,9 +29662,9 @@ name: paired limb/fin bud mesenchyme def: "Mesenchyme that is part of a limb/fin bud." [] is_a: UBERON:0010377 ! mesenchyme from somatopleure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0004357 ! paired limb/fin bud -relationship: BFO:0000050 UBERON:0004357 ! paired limb/fin bud -relationship: RO:0002202 UBERON:0010377 ! mesenchyme from somatopleure +intersection_of: BFO:0000050 UBERON:0004357 ! part of paired limb/fin bud +relationship: BFO:0000050 UBERON:0004357 ! part of paired limb/fin bud +relationship: RO:0002202 UBERON:0010377 ! develops_from mesenchyme from somatopleure [Term] id: UBERON:0010330 @@ -29673,8 +29672,8 @@ name: eyelid mesenchyme def: "Mesenchyme that is part of a developing eyelid." [] is_a: UBERON:0003314 ! eye mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid -relationship: BFO:0000050 UBERON:0001711 ! eyelid +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: BFO:0000050 UBERON:0001711 ! part of eyelid [Term] id: UBERON:0010332 @@ -29685,9 +29684,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0006875 ! embryonic handplate -relationship: BFO:0000050 UBERON:0006875 ! embryonic handplate -relationship: RO:0002202 UBERON:0003372 ! pectoral appendage bud ectoderm +intersection_of: BFO:0000050 UBERON:0006875 ! part of embryonic handplate +relationship: BFO:0000050 UBERON:0006875 ! part of embryonic handplate +relationship: RO:0002202 UBERON:0003372 ! develops_from pectoral appendage bud ectoderm [Term] id: UBERON:0010333 @@ -29697,9 +29696,9 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005631 ! extraembryonic membrane -relationship: BFO:0000050 UBERON:0005631 ! extraembryonic membrane -relationship: RO:0002202 UBERON:0005728 ! extraembryonic mesoderm +intersection_of: BFO:0000050 UBERON:0005631 ! part of extraembryonic membrane +relationship: BFO:0000050 UBERON:0005631 ! part of extraembryonic membrane +relationship: RO:0002202 UBERON:0005728 ! develops_from extraembryonic mesoderm [Term] id: UBERON:0010336 @@ -29709,10 +29708,10 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0006905 ! mandibular process mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0006905 ! mandibular process mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0006905 ! mandibular process mesenchyme -relationship: RO:0002202 UBERON:0010252 ! 1st arch mandibular mesenchyme from neural crest +intersection_of: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme +relationship: RO:0002202 UBERON:0010252 ! develops_from 1st arch mandibular mesenchyme from neural crest [Term] id: UBERON:0010337 @@ -29722,10 +29721,10 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0006905 ! mandibular process mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0006905 ! mandibular process mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0006905 ! mandibular process mesenchyme -relationship: RO:0002202 UBERON:0010339 ! 1st arch mandibular mesenchyme from head mesenchyme +intersection_of: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme +relationship: RO:0002202 UBERON:0010339 ! develops_from 1st arch mandibular mesenchyme from head mesenchyme [Term] id: UBERON:0010338 @@ -29735,10 +29734,10 @@ is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010045 ! 1st arch maxillary mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0010045 ! 1st arch maxillary mesenchyme -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: BFO:0000050 UBERON:0010045 ! part of 1st arch maxillary mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0010045 ! part of 1st arch maxillary mesenchyme +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0010339 @@ -29748,10 +29747,10 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0009584 ! 1st arch mandibular mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0009584 ! 1st arch mandibular mesenchyme -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0010341 @@ -29763,9 +29762,9 @@ is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010042 ! 1st arch mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0010042 ! 1st arch mesenchyme +intersection_of: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme [Term] id: UBERON:0010343 @@ -29780,10 +29779,10 @@ is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005689 ! 2nd arch mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0005689 ! 2nd arch mesenchyme -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0010344 @@ -29798,10 +29797,10 @@ is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0005690 ! 3rd arch mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0005690 ! 3rd arch mesenchyme -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0010347 @@ -29815,10 +29814,10 @@ is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010031 ! 6th arch mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0010031 ! 6th arch mesenchyme -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0010359 @@ -29830,9 +29829,9 @@ synonym: "neural crest derived arch mesenchyme" EXACT [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010046 ! entire pharyngeal arch associated mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest -relationship: BFO:0000050 UBERON:0010046 ! entire pharyngeal arch associated mesenchyme +intersection_of: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest +relationship: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme [Term] id: UBERON:0010360 @@ -29845,10 +29844,10 @@ is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0010046 ! entire pharyngeal arch associated mesenchyme -intersection_of: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm -relationship: BFO:0000050 UBERON:0010046 ! entire pharyngeal arch associated mesenchyme -relationship: RO:0002202 UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme +intersection_of: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm +relationship: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme +relationship: RO:0002202 UBERON:0006904 ! develops_from head mesenchyme from mesoderm [Term] id: UBERON:0010363 @@ -29881,10 +29880,10 @@ synonym: "tooth tissue" RELATED [] is_a: UBERON:0004755 ! skeletal tissue is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004755 ! skeletal tissue -intersection_of: BFO:0000050 UBERON:0010364 ! dermal skeleton -intersection_of: RO:0002202 UBERON:0001763 ! odontogenic papilla -relationship: BFO:0000050 UBERON:0010364 ! dermal skeleton -relationship: RO:0002202 UBERON:0001763 ! odontogenic papilla +intersection_of: BFO:0000050 UBERON:0010364 ! part of dermal skeleton +intersection_of: RO:0002202 UBERON:0001763 ! develops_from odontogenic papilla +relationship: BFO:0000050 UBERON:0010364 ! part of dermal skeleton +relationship: RO:0002202 UBERON:0001763 ! develops_from odontogenic papilla [Term] id: UBERON:0010366 @@ -29896,8 +29895,8 @@ synonym: "set of conjunctival veins" EXACT [] synonym: "venae conjunctivales" EXACT [] is_a: UBERON:0002203 ! vasculature of eye intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0001811 ! conjunctiva -relationship: BFO:0000050 UBERON:0001811 ! conjunctiva +intersection_of: BFO:0000050 UBERON:0001811 ! part of conjunctiva +relationship: BFO:0000050 UBERON:0001811 ! part of conjunctiva [Term] id: UBERON:0010367 @@ -29908,8 +29907,8 @@ is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0001811 ! conjunctiva -relationship: BFO:0000050 UBERON:0010366 ! conjunctival vasculature +intersection_of: BFO:0000050 UBERON:0001811 ! part of conjunctiva +relationship: BFO:0000050 UBERON:0010366 ! part of conjunctival vasculature [Term] id: UBERON:0010368 @@ -29919,9 +29918,9 @@ synonym: "lobulus pulmonis" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000051 UBERON:0002187 ! terminal bronchiole +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000051 UBERON:0002187 ! has part terminal bronchiole [Term] id: UBERON:0010371 @@ -29931,7 +29930,7 @@ synonym: "ectoderm-derived epithelium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000483 ! epithelium -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0010375 @@ -29939,7 +29938,7 @@ name: pancreas dorsal primordium synonym: "dorsal pancreas" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0003921 ! pancreas primordium +relationship: BFO:0000050 UBERON:0003921 ! part of pancreas primordium [Term] id: UBERON:0010376 @@ -29947,7 +29946,7 @@ name: pancreas ventral primordium synonym: "ventral pancreas" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0003921 ! pancreas primordium +relationship: BFO:0000050 UBERON:0003921 ! part of pancreas primordium [Term] id: UBERON:0010377 @@ -29957,10 +29956,10 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000922 ! embryo -intersection_of: RO:0002202 UBERON:0004874 ! somatopleure -relationship: BFO:0000050 UBERON:0009142 ! entire embryonic mesenchyme -relationship: RO:0002202 UBERON:0004874 ! somatopleure +intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo +intersection_of: RO:0002202 UBERON:0004874 ! develops_from somatopleure +relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme +relationship: RO:0002202 UBERON:0004874 ! develops_from somatopleure [Term] id: UBERON:0010378 @@ -29970,10 +29969,10 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000922 ! embryo -intersection_of: RO:0002202 UBERON:0004873 ! splanchnopleure -relationship: BFO:0000050 UBERON:0009142 ! entire embryonic mesenchyme -relationship: RO:0002202 UBERON:0004873 ! splanchnopleure +intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo +intersection_of: RO:0002202 UBERON:0004873 ! develops_from splanchnopleure +relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme +relationship: RO:0002202 UBERON:0004873 ! develops_from splanchnopleure [Term] id: UBERON:0010380 @@ -29981,8 +29980,8 @@ name: enteric nerve def: "the neurons that innervate the esophagus, stomach, small and large bowel" [] is_a: UBERON:0034728 ! autonomic nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002005 ! enteric nervous system -relationship: BFO:0000050 UBERON:0002005 ! enteric nervous system +intersection_of: BFO:0000050 UBERON:0002005 ! part of enteric nervous system +relationship: BFO:0000050 UBERON:0002005 ! part of enteric nervous system [Term] id: UBERON:0010386 @@ -29991,8 +29990,8 @@ def: "A lymphoid follicle that is part of a Peyer's patch." [] synonym: "peyer's patch follicle" EXACT [] is_a: UBERON:0000444 ! lymphoid follicle intersection_of: UBERON:0000444 ! lymphoid follicle -intersection_of: BFO:0000050 UBERON:0001211 ! Peyer's patch -relationship: BFO:0000050 UBERON:0001211 ! Peyer's patch +intersection_of: BFO:0000050 UBERON:0001211 ! part of Peyer's patch +relationship: BFO:0000050 UBERON:0001211 ! part of Peyer's patch [Term] id: UBERON:0010395 @@ -30002,7 +30001,7 @@ synonym: "primary follicle of lymph node" EXACT [] is_a: UBERON:0010422 ! primary nodular lymphoid tissue is_a: UBERON:0010748 ! lymph node follicle intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node [Term] id: UBERON:0010409 @@ -30013,7 +30012,7 @@ synonym: "eye surface region" EXACT [] synonym: "ocular surface" EXACT [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0010418 @@ -30022,8 +30021,8 @@ def: "An orifice that is part of a lower urinary tract." [] synonym: "urethral orifice" EXACT [] is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice -intersection_of: BFO:0000050 UBERON:0001556 ! lower urinary tract -relationship: BFO:0000050 UBERON:0001556 ! lower urinary tract +intersection_of: BFO:0000050 UBERON:0001556 ! part of lower urinary tract +relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract [Term] id: UBERON:0010422 @@ -30041,8 +30040,8 @@ def: "A primary nodular lymphoid tissue that is part of a tonsil." [] synonym: "lymphoid nodule of tonsil" RELATED [] is_a: UBERON:0010422 ! primary nodular lymphoid tissue intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue -intersection_of: BFO:0000050 UBERON:0002372 ! tonsil -relationship: BFO:0000050 UBERON:0002372 ! tonsil +intersection_of: BFO:0000050 UBERON:0002372 ! part of tonsil +relationship: BFO:0000050 UBERON:0002372 ! part of tonsil [Term] id: UBERON:0010427 @@ -30056,7 +30055,7 @@ synonym: "processus ciliares" RELATED [] synonym: "set of ciliary processes" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001775 ! ciliary body +relationship: BFO:0000050 UBERON:0001775 ! part of ciliary body [Term] id: UBERON:0010498 @@ -30086,7 +30085,7 @@ name: microcirculatory vessel def: "A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses." [] synonym: "microcirculatory vessels" RELATED [] is_a: UBERON:0000055 ! vessel -relationship: BFO:0000050 UBERON:0002049 ! vasculature +relationship: BFO:0000050 UBERON:0002049 ! part of vasculature [Term] id: UBERON:0010527 @@ -30095,15 +30094,15 @@ def: "An organ cavity that surrounded_by a bone." [] synonym: "bone organ cavity" EXACT [] is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity -intersection_of: BFO:0000050 UBERON:0001474 ! bone element -relationship: BFO:0000050 UBERON:0001474 ! bone element +intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element +relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0010528 name: pneumatic cavity of bone synonym: "air space of bone" EXACT [] is_a: UBERON:0010527 ! cavity of bone organ -relationship: BFO:0000050 UBERON:0008193 ! pneumatized bone +relationship: BFO:0000050 UBERON:0008193 ! part of pneumatized bone [Term] id: UBERON:0010531 @@ -30115,8 +30114,8 @@ synonym: "nephrogenic interstitium" RELATED [] synonym: "nephrogenic interstitium of nephrogenic zone" EXACT [] synonym: "peripheral blastema" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000050 UBERON:0009871 ! nephrogenic zone -relationship: RO:0002202 UBERON:0003220 ! metanephric mesenchyme +relationship: BFO:0000050 UBERON:0009871 ! part of nephrogenic zone +relationship: RO:0002202 UBERON:0003220 ! develops_from metanephric mesenchyme [Term] id: UBERON:0010532 @@ -30129,7 +30128,7 @@ synonym: "primitive nephron" BROAD [] is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube -relationship: RO:0002202 UBERON:0004209 ! renal vesicle +relationship: RO:0002202 UBERON:0004209 ! develops_from renal vesicle [Term] id: UBERON:0010533 @@ -30138,9 +30137,9 @@ def: "The metanephric cortex is the outer region of the metanephros[GO]." [] is_a: UBERON:0001225 ! cortex of kidney is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001225 ! cortex of kidney -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0000081 ! metanephros -relationship: RO:0002202 UBERON:0005113 ! metanephric cortex mesenchyme +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: RO:0002202 UBERON:0005113 ! develops_from metanephric cortex mesenchyme [Term] id: UBERON:0010534 @@ -30151,7 +30150,7 @@ synonym: "primitive mesonephric nephron" EXACT [] is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0010532 ! primitive nephron intersection_of: UBERON:0010532 ! primitive nephron -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0010535 @@ -30163,14 +30162,14 @@ synonym: "primitive nephron" BROAD [] is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0010532 ! primitive nephron intersection_of: UBERON:0010532 ! primitive nephron -intersection_of: BFO:0000050 UBERON:0000081 ! metanephros -relationship: BFO:0000050 UBERON:0005113 ! metanephric cortex mesenchyme +intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros +relationship: BFO:0000050 UBERON:0005113 ! part of metanephric cortex mesenchyme [Term] id: UBERON:0010536 name: nephron progenitor is_a: UBERON:0000479 ! tissue -relationship: BFO:0000050 UBERON:0003918 ! kidney mesenchyme +relationship: BFO:0000050 UBERON:0003918 ! part of kidney mesenchyme [Term] id: UBERON:0010537 @@ -30179,8 +30178,8 @@ def: "Cluster of cells comprising a portion of tissue which gives rise to new me is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010536 ! nephron progenitor intersection_of: UBERON:0010536 ! nephron progenitor -intersection_of: BFO:0000050 UBERON:0000080 ! mesonephros -relationship: BFO:0000050 UBERON:0000080 ! mesonephros +intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros +relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0010538 @@ -30189,9 +30188,9 @@ def: "An appendage segment that is part of a limb/fin." [] synonym: "limb/fin segment" EXACT [] is_a: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis -intersection_of: BFO:0000050 UBERON:0004708 ! paired limb/fin +intersection_of: BFO:0000050 UBERON:0004708 ! part of paired limb/fin disjoint_from: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0004708 ! paired limb/fin +relationship: BFO:0000050 UBERON:0004708 ! part of paired limb/fin [Term] id: UBERON:0010543 @@ -30209,9 +30208,9 @@ synonym: "skeletal parts of acropodium" RELATED [] synonym: "skeleton of digits" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision -relationship: BFO:0000050 UBERON:0012150 ! skeleton of digitopodium -relationship: BFO:0000050 UBERON:0012354 ! acropodium region -relationship: BFO:0000051 UBERON:0015023 ! phalanx endochondral element +relationship: BFO:0000050 UBERON:0012150 ! part of skeleton of digitopodium +relationship: BFO:0000050 UBERON:0012354 ! part of acropodium region +relationship: BFO:0000051 UBERON:0015023 ! has part phalanx endochondral element [Term] id: UBERON:0010585 @@ -30248,7 +30247,7 @@ synonym: "hind limb digit phalanx cartilage condensation" EXACT [] is_a: UBERON:0010701 ! phalanx cartilage element is_a: UBERON:0015030 ! pedal digit phalanx endochondral element is_a: UBERON:0035129 ! pes cartilage element -relationship: RO:0002202 UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +relationship: RO:0002202 UBERON:0010585 ! develops_from pedal digit phalanx pre-cartilage condensation [Term] id: UBERON:0010686 @@ -30259,7 +30258,7 @@ synonym: "hand digit phalanx cartilage condensation" NARROW [] is_a: UBERON:0010701 ! phalanx cartilage element is_a: UBERON:0015024 ! manual digit phalanx endochondral element is_a: UBERON:0035128 ! manus cartilage element -relationship: RO:0002202 UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +relationship: RO:0002202 UBERON:0010586 ! develops_from manual digit phalanx pre-cartilage condensation [Term] id: UBERON:0010688 @@ -30279,9 +30278,9 @@ synonym: "set of phalanges of hand" EXACT [] synonym: "set of phalanges of manus" EXACT [] is_a: UBERON:0010543 ! acropodial skeleton intersection_of: UBERON:0010543 ! acropodial skeleton -intersection_of: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus disjoint_from: UBERON:0010696 ! skeleton of pedal acropodium -relationship: BFO:0000050 UBERON:0012151 ! skeleton of manual digitopodium +relationship: BFO:0000050 UBERON:0012151 ! part of skeleton of manual digitopodium [Term] id: UBERON:0010696 @@ -30300,15 +30299,15 @@ synonym: "set of phalanges of foot" EXACT [] synonym: "set of phalanges of pes" EXACT [] is_a: UBERON:0010543 ! acropodial skeleton intersection_of: UBERON:0010543 ! acropodial skeleton -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0012152 ! skeleton of pedal digitopodium +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0012152 ! part of skeleton of pedal digitopodium [Term] id: UBERON:0010700 name: phalanx pre-cartilage condensation is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015023 ! phalanx endochondral element -relationship: BFO:0000050 UBERON:0010702 ! digit mesenchyme +relationship: BFO:0000050 UBERON:0010702 ! part of digit mesenchyme [Term] id: UBERON:0010701 @@ -30316,7 +30315,7 @@ name: phalanx cartilage element synonym: "phalanx cartilage condensation" EXACT [] is_a: UBERON:0015023 ! phalanx endochondral element is_a: UBERON:0015064 ! autopod cartilage -relationship: RO:0002202 UBERON:0010700 ! phalanx pre-cartilage condensation +relationship: RO:0002202 UBERON:0010700 ! develops_from phalanx pre-cartilage condensation [Term] id: UBERON:0010702 @@ -30325,8 +30324,8 @@ def: "Mesenchyme of the digit region." [] synonym: "digital ray" RELATED [] is_a: UBERON:0009749 ! limb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0002544 ! digit -relationship: BFO:0000050 UBERON:0002544 ! digit +intersection_of: BFO:0000050 UBERON:0002544 ! part of digit +relationship: BFO:0000050 UBERON:0002544 ! part of digit [Term] id: UBERON:0010707 @@ -30339,7 +30338,7 @@ synonym: "girdle plus limb or fin" EXACT [] synonym: "limb" RELATED [] is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0010708 @@ -30353,9 +30352,9 @@ synonym: "upper limb and pectoral girdle" RELATED [] synonym: "upper limb and shoulder" RELATED [] is_a: UBERON:0010707 ! appendage girdle complex intersection_of: UBERON:0010707 ! appendage girdle complex -intersection_of: BFO:0000051 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000051 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000051 UBERON:0012475 ! skeleton of pectoral complex +intersection_of: BFO:0000051 UBERON:0001421 ! has part pectoral girdle region +relationship: BFO:0000051 UBERON:0001421 ! has part pectoral girdle region +relationship: BFO:0000051 UBERON:0012475 ! has part skeleton of pectoral complex [Term] id: UBERON:0010709 @@ -30369,9 +30368,9 @@ synonym: "pelvic girdle plus pelvic limb or fin" EXACT [] synonym: "pelvic girdle plus posterior limb or fin" EXACT [] is_a: UBERON:0010707 ! appendage girdle complex intersection_of: UBERON:0010707 ! appendage girdle complex -intersection_of: BFO:0000051 UBERON:0001271 ! pelvic girdle region -relationship: BFO:0000051 UBERON:0001271 ! pelvic girdle region -relationship: BFO:0000051 UBERON:0012476 ! skeleton of pelvic complex +intersection_of: BFO:0000051 UBERON:0001271 ! has part pelvic girdle region +relationship: BFO:0000051 UBERON:0001271 ! has part pelvic girdle region +relationship: BFO:0000051 UBERON:0012476 ! has part skeleton of pelvic complex [Term] id: UBERON:0010712 @@ -30379,9 +30378,9 @@ name: limb skeleton subdivision def: "Skeletal subdivision that is a segment of the limb skeleton." [] is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0010719 @@ -30389,8 +30388,8 @@ name: girdle skeleton def: "The subdivision of the skeleton of either the pectoral or pelvic girdle." [] synonym: "skeleton of girdle" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0007823 ! appendage girdle region +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0007823 ! part of appendage girdle region [Term] id: UBERON:0010740 @@ -30400,9 +30399,9 @@ synonym: "bone of extended limb/fin region" RELATED [] synonym: "limb bone" RELATED [] is_a: UBERON:0001474 ! bone element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0010707 ! appendage girdle complex -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0010707 ! appendage girdle complex +intersection_of: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex [Term] id: UBERON:0010741 @@ -30413,8 +30412,8 @@ synonym: "forelimb bone" RELATED [] synonym: "wing bone" NARROW [] is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000050 UBERON:0010708 ! pectoral complex +intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex [Term] id: UBERON:0010742 @@ -30423,8 +30422,8 @@ def: "A bone that is part of a pelvic complex. Examples: pubis, ischium, fot pha synonym: "hindlimb bone" RELATED [] is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0010709 ! pelvic complex -relationship: BFO:0000050 UBERON:0010709 ! pelvic complex +intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex +relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex [Term] id: UBERON:0010743 @@ -30434,8 +30433,8 @@ synonym: "cerebral meninges" EXACT [] synonym: "cluster of meninges" EXACT [] synonym: "meninges" EXACT [] is_a: UBERON:0034925 ! anatomical collection -relationship: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: BFO:0000051 UBERON:0002360 ! meninx +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: BFO:0000051 UBERON:0002360 ! has part meninx [Term] id: UBERON:0010748 @@ -30444,8 +30443,8 @@ def: "A lymphoid follicle that is part of a lymph node." [] synonym: "follicle of lymph node" EXACT [] is_a: UBERON:0000444 ! lymphoid follicle intersection_of: UBERON:0000444 ! lymphoid follicle -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node -relationship: BFO:0000050 UBERON:0002006 ! cortex of lymph node +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: BFO:0000050 UBERON:0002006 ! part of cortex of lymph node [Term] id: UBERON:0010753 @@ -30454,8 +30453,8 @@ def: "A secondary follicle that is located in a lymph node" [] is_a: UBERON:0001745 ! secondary nodular lymphoid tissue is_a: UBERON:0010748 ! lymph node follicle intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue -intersection_of: BFO:0000050 UBERON:0000029 ! lymph node -relationship: RO:0002202 UBERON:0010395 ! lymph node primary follicle +intersection_of: BFO:0000050 UBERON:0000029 ! part of lymph node +relationship: RO:0002202 UBERON:0010395 ! develops_from lymph node primary follicle [Term] id: UBERON:0010754 @@ -30467,7 +30466,7 @@ synonym: "lymhpoid nodule" RELATED [] synonym: "nodule" RELATED [] synonym: "reaction center of follicle" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue -relationship: BFO:0000050 UBERON:0001745 ! secondary nodular lymphoid tissue +relationship: BFO:0000050 UBERON:0001745 ! part of secondary nodular lymphoid tissue [Term] id: UBERON:0010758 @@ -30476,7 +30475,7 @@ def: "A major subdivision of an organism that divides an organism along an axis synonym: "appendage segment" EXACT [] synonym: "appendicular segment" EXACT [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0000026 ! appendage +relationship: BFO:0000050 UBERON:0000026 ! part of appendage [Term] id: UBERON:0010881 @@ -30484,14 +30483,14 @@ name: limb cartilage element def: "A skeletal element that is part of a limb and composed of cartilage tissue." [] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0015061 ! limb endochondral element -relationship: RO:0002202 UBERON:0010882 ! limb bone pre-cartilage condensation +relationship: RO:0002202 UBERON:0010882 ! develops_from limb bone pre-cartilage condensation [Term] id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A skeletal element that is part of a limb and composed of pre-cartilage tissue." [] is_a: UBERON:0015061 ! limb endochondral element -relationship: BFO:0000051 UBERON:0005866 ! pre-cartilage condensation +relationship: BFO:0000051 UBERON:0005866 ! has part pre-cartilage condensation [Term] id: UBERON:0010883 @@ -30501,7 +30500,7 @@ synonym: "forelimb wing cartilaginous condensation" NARROW [] synonym: "wing cartilaginous condensation" NARROW [] is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015021 ! forelimb endochondral element -relationship: RO:0002202 UBERON:0010884 ! forelimb bone pre-cartilage condensation +relationship: RO:0002202 UBERON:0010884 ! develops_from forelimb bone pre-cartilage condensation [Term] id: UBERON:0010884 @@ -30518,7 +30517,7 @@ def: "A cartilaginous condensation that has the potential to develop into a hind synonym: "hindlimb cartilage condensation" EXACT [] is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015022 ! hindlimb endochondral element -relationship: RO:0002202 UBERON:0010886 ! hindlimb pre-cartilage condensation +relationship: RO:0002202 UBERON:0010886 ! develops_from hindlimb pre-cartilage condensation [Term] id: UBERON:0010886 @@ -30540,8 +30539,8 @@ synonym: "pelvic girdle or hind limb muscle" NARROW [] synonym: "pelvic girdle or posterior limb muscle" NARROW [] is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0010709 ! pelvic complex -relationship: BFO:0000050 UBERON:0014792 ! musculature of pelvic complex +intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex +relationship: BFO:0000050 UBERON:0014792 ! part of musculature of pelvic complex [Term] id: UBERON:0010891 @@ -30554,8 +30553,8 @@ synonym: "pectoral girdle and fore limb muscles" EXACT [] synonym: "upper limb muscle" NARROW [] is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000050 UBERON:0014793 ! musculature of pectoral complex +intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000050 UBERON:0014793 ! part of musculature of pectoral complex [Term] id: UBERON:0010899 @@ -30565,10 +30564,10 @@ synonym: "serially hermaphroditic organism" RELATED [] synonym: "simultaneous hermaphroditic organism" RELATED [] is_a: UBERON:0007197 ! hermaphroditic organism intersection_of: UBERON:0000468 ! multicellular organism -intersection_of: BFO:0000051 UBERON:0000473 ! testis -intersection_of: BFO:0000051 UBERON:0000992 ! ovary -relationship: BFO:0000051 UBERON:0000473 ! testis -relationship: BFO:0000051 UBERON:0000992 ! ovary +intersection_of: BFO:0000051 UBERON:0000473 ! has part testis +intersection_of: BFO:0000051 UBERON:0000992 ! has part ovary +relationship: BFO:0000051 UBERON:0000473 ! has part testis +relationship: BFO:0000051 UBERON:0000992 ! has part ovary [Term] id: UBERON:0010912 @@ -30577,8 +30576,8 @@ def: "Anatomical cluster consisting of the skeletal elements (i.e. bone elements synonym: "skeletal subdivision" EXACT [] synonym: "subdivision of skeleton (in vivo)" RELATED [] is_a: UBERON:0011216 ! organ system subdivision -relationship: BFO:0000050 UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0004288 ! skeleton +relationship: BFO:0000050 UBERON:0000075 ! part of subdivision of skeletal system +relationship: BFO:0000050 UBERON:0004288 ! part of skeleton [Term] id: UBERON:0010913 @@ -30589,8 +30588,8 @@ synonym: "vertebra endochondral element" NARROW [] synonym: "vertebra skeletal element" BROAD [] synonym: "vertebral endochondral element" NARROW [] is_a: UBERON:0004765 ! skeletal element -relationship: BFO:0000050 UBERON:0001130 ! vertebral column -relationship: RO:0002202 UBERON:0003089 ! sclerotome +relationship: BFO:0000050 UBERON:0001130 ! part of vertebral column +relationship: RO:0002202 UBERON:0003089 ! develops_from sclerotome [Term] id: UBERON:0010959 @@ -30600,23 +30599,23 @@ synonym: "muscle of head and neck" RELATED [] synonym: "muscle of head or neck" EXACT [] is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0007811 ! craniocervical region -relationship: BFO:0000050 UBERON:0008229 ! craniocervical region musculature +intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region +relationship: BFO:0000050 UBERON:0008229 ! part of craniocervical region musculature [Term] id: UBERON:0010963 name: trunk and cervical myotome group is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003082 ! myotome -relationship: BFO:0000050 UBERON:0005256 ! trunk mesenchyme +relationship: BFO:0000050 UBERON:0005256 ! part of trunk mesenchyme [Term] id: UBERON:0010984 name: pectoral pre-muscle mass is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 ! pre-muscle condensation -relationship: BFO:0000050 UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle -relationship: RO:0002202 UBERON:0010963 ! trunk and cervical myotome group +relationship: BFO:0000050 UBERON:0008713 ! part of pectoral girdle and thoracic body wall skeletal muscle +relationship: RO:0002202 UBERON:0010963 ! develops_from trunk and cervical myotome group [Term] id: UBERON:0010996 @@ -30627,7 +30626,7 @@ synonym: "cartilago articularis" EXACT [] synonym: "hyaline cartilage" RELATED [] synonym: "joint-associated cartilage" RELATED [] is_a: UBERON:0001994 ! hyaline cartilage tissue -relationship: BFO:0000050 UBERON:0002217 ! synovial joint +relationship: BFO:0000050 UBERON:0002217 ! part of synovial joint [Term] id: UBERON:0011004 @@ -30638,8 +30637,8 @@ synonym: "splanchnocranium cartilage" EXACT [] is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0008895 ! splanchnocranium -relationship: BFO:0000050 UBERON:0008895 ! splanchnocranium +intersection_of: BFO:0000050 UBERON:0008895 ! part of splanchnocranium +relationship: BFO:0000050 UBERON:0008895 ! part of splanchnocranium [Term] id: UBERON:0011088 @@ -30648,8 +30647,8 @@ def: "A ligament that is part of a knee joint." [] synonym: "knee joint ligament" EXACT [] is_a: UBERON:0008846 ! skeletal ligament intersection_of: UBERON:0000211 ! ligament -intersection_of: BFO:0000050 UBERON:0001485 ! knee joint -relationship: BFO:0000050 UBERON:0001485 ! knee joint +intersection_of: BFO:0000050 UBERON:0001485 ! part of knee joint +relationship: BFO:0000050 UBERON:0001485 ! part of knee joint [Term] id: UBERON:0011094 @@ -30658,7 +30657,7 @@ def: "The cartilaginous form of a vertebral element, a skeletal element that for synonym: "vertebral cartilage condensation" EXACT [] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0010913 ! vertebral element -relationship: RO:0002202 UBERON:0011095 ! vertebra pre-cartilage condensation +relationship: RO:0002202 UBERON:0011095 ! develops_from vertebra pre-cartilage condensation [Term] id: UBERON:0011095 @@ -30666,8 +30665,8 @@ name: vertebra pre-cartilage condensation def: "The pre-cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [] synonym: "vertebral pre-cartilage condensation" EXACT [] is_a: UBERON:0010913 ! vertebral element -relationship: BFO:0000051 UBERON:0005866 ! pre-cartilage condensation -relationship: RO:0002202 UBERON:0003089 ! sclerotome +relationship: BFO:0000051 UBERON:0005866 ! has part pre-cartilage condensation +relationship: RO:0002202 UBERON:0003089 ! develops_from sclerotome [Term] id: UBERON:0011107 @@ -30678,8 +30677,8 @@ synonym: "pelvic girdle joint" EXACT [] is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 ! joint of girdle intersection_of: UBERON:0002217 ! synovial joint -intersection_of: BFO:0000050 UBERON:0001271 ! pelvic girdle region -relationship: BFO:0000050 UBERON:0001271 ! pelvic girdle region +intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region +relationship: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region [Term] id: UBERON:0011108 @@ -30690,8 +30689,8 @@ synonym: "pectoral girdle joint" EXACT [] is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 ! joint of girdle intersection_of: UBERON:0002217 ! synovial joint -intersection_of: BFO:0000050 UBERON:0001421 ! pectoral girdle region -relationship: BFO:0000050 UBERON:0001421 ! pectoral girdle region +intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region +relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region [Term] id: UBERON:0011134 @@ -30705,15 +30704,15 @@ id: UBERON:0011135 name: intervertebral cartilage def: "A cartilage element that lies between two successive vertebral centra." [] is_a: UBERON:0007844 ! cartilage element -relationship: BFO:0000050 UBERON:0001468 ! intervertebral joint +relationship: BFO:0000050 UBERON:0001468 ! part of intervertebral joint [Term] id: UBERON:0011137 name: axial skeletal system def: "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000051 UBERON:0000982 ! skeletal joint -relationship: BFO:0000051 UBERON:0005944 ! axial skeleton plus cranial skeleton +relationship: BFO:0000051 UBERON:0000982 ! has part skeletal joint +relationship: BFO:0000051 UBERON:0005944 ! has part axial skeleton plus cranial skeleton [Term] id: UBERON:0011138 @@ -30722,7 +30721,7 @@ def: "Subdivision of the skeletal system which consists of the postcranial axial synonym: "axial skeletal system" BROAD [] synonym: "post-cranial axial skeletal system" EXACT [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: RO:0002202 UBERON:0003089 ! sclerotome +relationship: RO:0002202 UBERON:0003089 ! develops_from sclerotome [Term] id: UBERON:0011139 @@ -30732,16 +30731,16 @@ synonym: "synovial joint of free limb segment" EXACT [] is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0002217 ! synovial joint -intersection_of: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0011143 name: upper urinary tract def: "Subdivision of urinary system which consists of the kidney and the ureters." [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0001008 ! renal system -relationship: BFO:0000051 UBERON:0000056 ! ureter -relationship: BFO:0000051 UBERON:0002113 ! kidney +relationship: BFO:0000050 UBERON:0001008 ! part of renal system +relationship: BFO:0000051 UBERON:0000056 ! has part ureter +relationship: BFO:0000051 UBERON:0002113 ! has part kidney [Term] id: UBERON:0011148 @@ -30750,7 +30749,7 @@ def: "Gland of the lamina epithelialis mucosae which perforate the lamina muscul is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland -relationship: BFO:0000050 UBERON:0003126 ! trachea +relationship: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0011156 @@ -30763,8 +30762,8 @@ synonym: "ossa faciei" RELATED [] synonym: "viscerocranium" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011158 ! primary subdivision of skull -relationship: BFO:0000050 UBERON:0001456 ! face -relationship: RO:0002202 UBERON:0002342 ! neural crest +relationship: BFO:0000050 UBERON:0001456 ! part of face +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0011158 @@ -30773,13 +30772,13 @@ def: "The skull can be divided into two: the neurocranium and the facial skeleto synonym: "skull subdivision" EXACT [] synonym: "subdivision of skull" EXACT [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0003129 ! skull +relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0011159 name: primary subdivision of cranial skeletal system is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000050 UBERON:0010323 ! cranial skeletal system +relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system [Term] id: UBERON:0011164 @@ -30788,8 +30787,8 @@ def: "A bone that is part of a neurocranium [Automatically generated definition] synonym: "chondrocranium bone" EXACT [] is_a: UBERON:0004766 ! cranial bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0001703 ! neurocranium -relationship: BFO:0000050 UBERON:0001703 ! neurocranium +intersection_of: BFO:0000050 UBERON:0001703 ! part of neurocranium +relationship: BFO:0000050 UBERON:0001703 ! part of neurocranium [Term] id: UBERON:0011184 @@ -30799,8 +30798,8 @@ synonym: "crypt epithelium" BROAD [] synonym: "intestinal crypt epithelium" EXACT [] is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001983 ! crypt of Lieberkuhn -relationship: BFO:0000050 UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: BFO:0000050 UBERON:0001983 ! part of crypt of Lieberkuhn +relationship: BFO:0000050 UBERON:0001983 ! part of crypt of Lieberkuhn [Term] id: UBERON:0011185 @@ -30809,8 +30808,8 @@ def: "A sphincter muscle that is part of the gastrointestinal system" [] is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system -relationship: BFO:0000050 UBERON:0005409 ! alimentary part of gastrointestinal system +intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system +relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0011189 @@ -30821,9 +30820,9 @@ synonym: "large intestinal lamina propria" EXACT [] synonym: "large intestine lamina propria" EXACT [] is_a: UBERON:0004780 ! gastrointestinal system lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001169 ! wall of large intestine -relationship: BFO:0000050 UBERON:0001207 ! mucosa of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine +relationship: BFO:0000050 UBERON:0001207 ! part of mucosa of large intestine [Term] id: UBERON:0011197 @@ -30833,9 +30832,9 @@ is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006799 ! glandular epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001132 ! parathyroid gland -relationship: BFO:0000050 UBERON:0001132 ! parathyroid gland -relationship: RO:0002202 UBERON:0004117 ! pharyngeal pouch +intersection_of: BFO:0000050 UBERON:0001132 ! part of parathyroid gland +relationship: BFO:0000050 UBERON:0001132 ! part of parathyroid gland +relationship: RO:0002202 UBERON:0004117 ! develops_from pharyngeal pouch [Term] id: UBERON:0011198 @@ -30847,8 +30846,8 @@ synonym: "muscularis externa of large intestine" EXACT [] synonym: "tunica muscularis intestini crassi" EXACT [] is_a: UBERON:0012367 ! muscle layer of intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000059 ! large intestine -relationship: BFO:0000050 UBERON:0001169 ! wall of large intestine +intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine +relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0011201 @@ -30862,8 +30861,8 @@ synonym: "tunica muscularis (intestinum tenue)" EXACT [] synonym: "tunica muscularis intestini tenuis" EXACT [] is_a: UBERON:0012367 ! muscle layer of intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0002108 ! small intestine -relationship: BFO:0000050 UBERON:0001168 ! wall of small intestine +intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine +relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0011215 @@ -30873,15 +30872,15 @@ synonym: "cell part cluster of neuraxis" EXACT [] synonym: "neuraxis layer" EXACT [] is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure -intersection_of: BFO:0000050 UBERON:0001017 ! central nervous system -relationship: BFO:0000050 UBERON:0001017 ! central nervous system +intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system +relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0011216 name: organ system subdivision def: "A subdivision of an anatomical system." [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0000467 ! anatomical system +relationship: BFO:0000050 UBERON:0000467 ! part of anatomical system [Term] id: UBERON:0011222 @@ -30891,15 +30890,15 @@ synonym: "intrinsic ocular muscle" EXACT [] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004277 ! eye muscle -relationship: BFO:0000050 UBERON:0003386 ! smooth muscle of eye +relationship: BFO:0000050 UBERON:0003386 ! part of smooth muscle of eye [Term] id: UBERON:0011249 name: appendicular skeletal system def: "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." [] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: BFO:0000051 UBERON:0000982 ! skeletal joint -relationship: BFO:0000051 UBERON:0002091 ! appendicular skeleton +relationship: BFO:0000051 UBERON:0000982 ! has part skeletal joint +relationship: BFO:0000051 UBERON:0002091 ! has part appendicular skeleton [Term] id: UBERON:0011250 @@ -30907,7 +30906,7 @@ name: autopod bone def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [] is_a: UBERON:0002428 ! limb bone is_a: UBERON:0015063 ! autopod endochondral element -relationship: RO:0002202 UBERON:0015064 ! autopod cartilage +relationship: RO:0002202 UBERON:0015064 ! develops_from autopod cartilage [Term] id: UBERON:0011270 @@ -30918,7 +30917,7 @@ synonym: "dorsal part of trunk" EXACT [] synonym: "dorsum of trunk" EXACT [] synonym: "trunk back" EXACT [] is_a: UBERON:0009569 ! subdivision of trunk -relationship: BFO:0000050 UBERON:0001137 ! dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0011272 @@ -30927,8 +30926,8 @@ synonym: "basal cell layer of skin" RELATED [] synonym: "outer epithelium of body" RELATED [] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0002199 ! integument -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0002199 ! part of integument +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0011289 @@ -30938,8 +30937,8 @@ synonym: "pharyngeal aponeurosis" EXACT [] synonym: "pharyngeal aponeurosis" RELATED [] is_a: UBERON:0006614 ! aponeurosis intersection_of: UBERON:0006614 ! aponeurosis -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0001042 ! chordate pharynx +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0011298 @@ -30953,8 +30952,8 @@ is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0003889 ! fallopian tube -relationship: BFO:0000050 UBERON:0003889 ! fallopian tube +intersection_of: BFO:0000050 UBERON:0003889 ! part of fallopian tube +relationship: BFO:0000050 UBERON:0003889 ! part of fallopian tube [Term] id: UBERON:0011299 @@ -30966,8 +30965,8 @@ synonym: "telencephalic tracts" NARROW [] synonym: "telencephalic white matter" EXACT [] is_a: UBERON:0019261 ! white matter of forebrain intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0011300 @@ -30976,8 +30975,8 @@ def: "A portion of gray matter that is part of a telencephalon." [] synonym: "predominantly gray regional part of telencephalon" EXACT [] is_a: UBERON:0019264 ! gray matter of forebrain intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0011332 @@ -30994,7 +30993,7 @@ synonym: "set of blood vessels of head" EXACT [] is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004537 ! blood vasculature intersection_of: UBERON:0004537 ! blood vasculature -intersection_of: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0011363 @@ -31008,7 +31007,7 @@ synonym: "set of lymphatic vessels of head" EXACT [] is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004536 ! lymph vasculature intersection_of: UBERON:0004536 ! lymph vasculature -intersection_of: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0011374 @@ -31017,9 +31016,9 @@ def: "A retractable double-layered fold of skin and mucous membrane that covers is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone -relationship: BFO:0000050 UBERON:0003133 ! reproductive organ -relationship: BFO:0000051 UBERON:0000344 ! mucosa -relationship: RO:0002202 UBERON:0035004 ! preputial swelling +relationship: BFO:0000050 UBERON:0003133 ! part of reproductive organ +relationship: BFO:0000051 UBERON:0000344 ! has part mucosa +relationship: RO:0002202 UBERON:0035004 ! develops_from preputial swelling [Term] id: UBERON:0011582 @@ -31030,9 +31029,9 @@ synonym: "skeletal parts of limb/fin" EXACT [] synonym: "skeleton of limb/fin" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0004708 ! paired limb/fin -relationship: RO:0002202 UBERON:0003081 ! lateral plate mesoderm +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0004708 ! part of paired limb/fin +relationship: RO:0002202 UBERON:0003081 ! develops_from lateral plate mesoderm [Term] id: UBERON:0011583 @@ -31047,8 +31046,8 @@ synonym: "stylopodium" RELATED [] synonym: "stylopodium skeleton" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision -relationship: BFO:0000050 UBERON:0002472 ! stylopod -relationship: BFO:0000050 UBERON:0004381 ! skeleton of limb +relationship: BFO:0000050 UBERON:0002472 ! part of stylopod +relationship: BFO:0000050 UBERON:0004381 ! part of skeleton of limb [Term] id: UBERON:0011585 @@ -31064,7 +31063,7 @@ synonym: "pre-dentine tissue" EXACT [] synonym: "predentin" EXACT [] synonym: "predentine tissue" EXACT [] is_a: UBERON:0010365 ! odontoid tissue -relationship: RO:0002202 UBERON:0002342 ! neural crest +relationship: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0011588 @@ -31086,8 +31085,8 @@ name: jaw region def: "A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions." [] is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0000165 ! mouth -relationship: BFO:0000051 UBERON:0001708 ! jaw skeleton +relationship: BFO:0000050 UBERON:0000165 ! part of mouth +relationship: BFO:0000051 UBERON:0001708 ! has part jaw skeleton [Term] id: UBERON:0011602 @@ -31103,8 +31102,8 @@ synonym: "mandibular gum" RELATED [] is_a: UBERON:0001828 ! gingiva is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001828 ! gingiva -intersection_of: BFO:0000050 UBERON:0001710 ! lower jaw region -relationship: BFO:0000050 UBERON:0001710 ! lower jaw region +intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region +relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region [Term] id: UBERON:0011642 @@ -31114,9 +31113,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002424 ! oral epithelium -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm -relationship: RO:0002202 UBERON:0009479 ! ectoderm of buccopharyngeal membrane +intersection_of: BFO:0000050 UBERON:0002424 ! part of oral epithelium +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm +relationship: RO:0002202 UBERON:0009479 ! develops_from ectoderm of buccopharyngeal membrane [Term] id: UBERON:0011676 @@ -31126,7 +31125,7 @@ synonym: "axial subdivision of organism" EXACT [] synonym: "body segment" RELATED [] synonym: "main body segment" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0013701 ! main body axis +relationship: BFO:0000050 UBERON:0013701 ! part of main body axis [Term] id: UBERON:0011695 @@ -31137,8 +31136,8 @@ synonym: "embryonic circulatory system" RELATED [] synonym: "fetal circulatory system" RELATED [] is_a: UBERON:0004535 ! cardiovascular system intersection_of: UBERON:0004535 ! cardiovascular system -intersection_of: BFO:0000050 UBERON:0004716 ! conceptus -relationship: BFO:0000050 UBERON:0004716 ! conceptus +intersection_of: BFO:0000050 UBERON:0004716 ! part of conceptus +relationship: BFO:0000050 UBERON:0004716 ! part of conceptus [Term] id: UBERON:0011757 @@ -31150,8 +31149,8 @@ synonym: "primordial phallus" RELATED [] is_a: UBERON:0005423 ! developing anatomical structure union_of: UBERON:0006233 ! female genital tubercle union_of: UBERON:0006261 ! male genital tubercle -relationship: BFO:0000050 UBERON:0004176 ! external genitalia -relationship: RO:0002202 UBERON:0005876 ! undifferentiated genital tubercle +relationship: BFO:0000050 UBERON:0004176 ! part of external genitalia +relationship: RO:0002202 UBERON:0005876 ! develops_from undifferentiated genital tubercle [Term] id: UBERON:0011777 @@ -31160,8 +31159,8 @@ def: "A neural nucleus that is part of the spinal cord." [] synonym: "spinal cord nucleus" EXACT [] is_a: UBERON:0000125 ! neural nucleus intersection_of: UBERON:0000125 ! neural nucleus -intersection_of: BFO:0000050 UBERON:0002240 ! spinal cord -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0011779 @@ -31171,8 +31170,8 @@ synonym: "cephalic nerve" RELATED [] synonym: "head nerve" RELATED [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0011814 @@ -31210,7 +31209,7 @@ name: dense connective tissue def: "Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets" [] is_a: UBERON:0002384 ! connective tissue disjoint_from: UBERON:0011825 ! loose connective tissue -relationship: BFO:0000051 UBERON:0011860 ! collection of collagen fibrils +relationship: BFO:0000051 UBERON:0011860 ! has part collection of collagen fibrils [Term] id: UBERON:0011824 @@ -31233,8 +31232,8 @@ synonym: "sebaceous gland duct" EXACT [] is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0001821 ! sebaceous gland -relationship: BFO:0000050 UBERON:0001821 ! sebaceous gland +intersection_of: BFO:0000050 UBERON:0001821 ! part of sebaceous gland +relationship: BFO:0000050 UBERON:0001821 ! part of sebaceous gland [Term] id: UBERON:0011846 @@ -31244,8 +31243,8 @@ synonym: "sebaceous gland acinus" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0001821 ! sebaceous gland -relationship: BFO:0000050 UBERON:0001821 ! sebaceous gland +intersection_of: BFO:0000050 UBERON:0001821 ! part of sebaceous gland +relationship: BFO:0000050 UBERON:0001821 ! part of sebaceous gland [Term] id: UBERON:0011850 @@ -31254,8 +31253,8 @@ def: "An acinus that is part of a salivary gland." [] synonym: "salivary gland acinus" EXACT [] is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0001044 ! saliva-secreting gland -relationship: BFO:0000050 UBERON:0001044 ! saliva-secreting gland +intersection_of: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland +relationship: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland [Term] id: UBERON:0011856 @@ -31265,8 +31264,8 @@ synonym: "lactiferous gland acinus" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001912 ! lobule of mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001912 ! part of lobule of mammary gland [Term] id: UBERON:0011857 @@ -31277,8 +31276,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0001817 ! lacrimal gland -relationship: BFO:0000050 UBERON:0001817 ! lacrimal gland +intersection_of: BFO:0000050 UBERON:0001817 ! part of lacrimal gland +relationship: BFO:0000050 UBERON:0001817 ! part of lacrimal gland [Term] id: UBERON:0011858 @@ -31287,8 +31286,8 @@ def: "An acinus that is part of a exocrine gland." [] synonym: "exocrine gland acinus" EXACT [] is_a: UBERON:0009842 ! glandular acinus intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0002365 ! exocrine gland -relationship: BFO:0000050 UBERON:0002365 ! exocrine gland +intersection_of: BFO:0000050 UBERON:0002365 ! part of exocrine gland +relationship: BFO:0000050 UBERON:0002365 ! part of exocrine gland [Term] id: UBERON:0011860 @@ -31302,8 +31301,8 @@ def: "The connective tissue bundles in the extracellular matrix of aorta tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils -intersection_of: BFO:0000050 UBERON:0004664 ! aorta tunica adventitia -relationship: BFO:0000050 UBERON:0004664 ! aorta tunica adventitia +intersection_of: BFO:0000050 UBERON:0004664 ! part of aorta tunica adventitia +relationship: BFO:0000050 UBERON:0004664 ! part of aorta tunica adventitia [Term] id: UBERON:0011862 @@ -31312,8 +31311,8 @@ def: "The connective tissue bundles in the extracellular matrix of pulmonary tis is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0011863 @@ -31321,8 +31320,8 @@ name: bone collagen fibril def: "The connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity" [] is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils -intersection_of: BFO:0000050 UBERON:0001474 ! bone element -relationship: BFO:0000050 UBERON:0001474 ! bone element +intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element +relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0011864 @@ -31330,8 +31329,8 @@ name: tendon collagen fibril def: "The connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity" [] is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils -intersection_of: BFO:0000050 UBERON:0000043 ! tendon -relationship: BFO:0000050 UBERON:0000043 ! tendon +intersection_of: BFO:0000050 UBERON:0000043 ! part of tendon +relationship: BFO:0000050 UBERON:0000043 ! part of tendon [Term] id: UBERON:0011865 @@ -31340,8 +31339,8 @@ def: "The connective tissue bundles in the extracellular matrix of corneal strom is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils -intersection_of: BFO:0000050 UBERON:0001777 ! substantia propria of cornea -relationship: BFO:0000050 UBERON:0001777 ! substantia propria of cornea +intersection_of: BFO:0000050 UBERON:0001777 ! part of substantia propria of cornea +relationship: BFO:0000050 UBERON:0001777 ! part of substantia propria of cornea [Term] id: UBERON:0011878 @@ -31355,9 +31354,9 @@ synonym: "tunica muscularis esophagi" EXACT [] synonym: "tunica muscularis oesophageae" EXACT [] is_a: UBERON:0018261 ! muscular coat of digestive tract intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001096 ! wall of esophagus -relationship: BFO:0000051 UBERON:0001134 ! skeletal muscle tissue +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus +relationship: BFO:0000051 UBERON:0001134 ! has part skeletal muscle tissue [Term] id: UBERON:0011892 @@ -31374,9 +31373,9 @@ synonym: "vasculosa oculi" RELATED [] synonym: "ventral uveal tract" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0001768 ! uvea -relationship: BFO:0000051 UBERON:0001769 ! iris -relationship: BFO:0000051 UBERON:0001775 ! ciliary body +relationship: BFO:0000050 UBERON:0001768 ! part of uvea +relationship: BFO:0000051 UBERON:0001769 ! has part iris +relationship: BFO:0000051 UBERON:0001775 ! has part ciliary body [Term] id: UBERON:0011894 @@ -31385,8 +31384,8 @@ def: "A organ cavity that is part of a vagina." [] synonym: "vaginal lumen" EXACT [] is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0011919 @@ -31397,9 +31396,9 @@ synonym: "yolk sac blood islands" EXACT [] is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0003061 ! blood island intersection_of: UBERON:0003061 ! blood island -intersection_of: BFO:0000050 UBERON:0003316 ! mesenchyme of yolk sac -relationship: BFO:0000050 UBERON:0003316 ! mesenchyme of yolk sac -relationship: RO:0002202 UBERON:0003316 ! mesenchyme of yolk sac +intersection_of: BFO:0000050 UBERON:0003316 ! part of mesenchyme of yolk sac +relationship: BFO:0000050 UBERON:0003316 ! part of mesenchyme of yolk sac +relationship: RO:0002202 UBERON:0003316 ! develops_from mesenchyme of yolk sac [Term] id: UBERON:0011921 @@ -31409,8 +31408,8 @@ synonym: "insula sanguinea vesiculae umbilicalis" EXACT [] is_a: UBERON:0007503 ! epithelial vesicle is_a: UBERON:0010303 ! extraembryonic epithelium is_a: UBERON:0012275 ! meso-epithelium -relationship: BFO:0000050 UBERON:0002331 ! umbilical cord -relationship: RO:0002202 UBERON:0005667 ! connecting stalk mesoderm +relationship: BFO:0000050 UBERON:0002331 ! part of umbilical cord +relationship: RO:0002202 UBERON:0005667 ! develops_from connecting stalk mesoderm [Term] id: UBERON:0011922 @@ -31422,8 +31421,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005769 ! basement membrane of epithelium -intersection_of: BFO:0000050 UBERON:0002499 ! cochlear labyrinth -relationship: BFO:0000050 UBERON:0002499 ! cochlear labyrinth +intersection_of: BFO:0000050 UBERON:0002499 ! part of cochlear labyrinth +relationship: BFO:0000050 UBERON:0002499 ! part of cochlear labyrinth [Term] id: UBERON:0011931 @@ -31434,8 +31433,8 @@ synonym: "hair of vestibular part of nose" EXACT [] synonym: "nose hair" EXACT [] is_a: UBERON:0010171 ! strand of hair of face intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0000004 ! nose +intersection_of: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0000004 ! part of nose [Term] id: UBERON:0011932 @@ -31448,10 +31447,10 @@ synonym: "pilosebaceous apparatus" EXACT [] synonym: "pilosebaceous gland" RELATED [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0006003 ! integumentary adnexa -relationship: BFO:0000051 UBERON:0001821 ! sebaceous gland -relationship: BFO:0000051 UBERON:0002033 ! arrector muscle of hair -relationship: BFO:0000051 UBERON:0002073 ! hair follicle +relationship: BFO:0000050 UBERON:0006003 ! part of integumentary adnexa +relationship: BFO:0000051 UBERON:0001821 ! has part sebaceous gland +relationship: BFO:0000051 UBERON:0002033 ! has part arrector muscle of hair +relationship: BFO:0000051 UBERON:0002073 ! has part hair follicle [Term] id: UBERON:0011953 @@ -31460,8 +31459,8 @@ def: "A region of the stomach that is lined with glandular epithelium." [] synonym: "glandular stomach" RELATED [] is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach -intersection_of: BFO:0000051 UBERON:0006924 ! stomach glandular epithelium -relationship: BFO:0000051 UBERON:0006924 ! stomach glandular epithelium +intersection_of: BFO:0000051 UBERON:0006924 ! has part stomach glandular epithelium +relationship: BFO:0000051 UBERON:0006924 ! has part stomach glandular epithelium [Term] id: UBERON:0011973 @@ -31470,8 +31469,8 @@ def: "An epiphysis that is part of a phalanx of a pes [Automatically generated d synonym: "epiphysis of phalanx of toe" EXACT [] is_a: UBERON:0001437 ! epiphysis intersection_of: UBERON:0001437 ! epiphysis -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0011997 @@ -31495,16 +31494,16 @@ name: dermatological-muscosal system def: "Anatomical system that consists of the integumental system plus all mucosae and submucosae." [] synonym: "dermatological system" RELATED [] is_a: UBERON:0000467 ! anatomical system -relationship: BFO:0000051 UBERON:0000009 ! submucosa -relationship: BFO:0000051 UBERON:0000344 ! mucosa -relationship: BFO:0000051 UBERON:0002072 ! hypodermis -relationship: BFO:0000051 UBERON:0002097 ! skin of body +relationship: BFO:0000051 UBERON:0000009 ! has part submucosa +relationship: BFO:0000051 UBERON:0000344 ! has part mucosa +relationship: BFO:0000051 UBERON:0002072 ! has part hypodermis +relationship: BFO:0000051 UBERON:0002097 ! has part skin of body [Term] id: UBERON:0012139 name: segment of autopod is_a: UBERON:0002529 ! limb segment -relationship: BFO:0000050 UBERON:0002470 ! autopod region +relationship: BFO:0000050 UBERON:0002470 ! part of autopod region [Term] id: UBERON:0012140 @@ -31512,7 +31511,7 @@ name: digitopodium region def: "A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region." [] synonym: "acropodium (Wagner)" RELATED [] is_a: UBERON:0012139 ! segment of autopod -relationship: BFO:0000051 UBERON:0012150 ! skeleton of digitopodium +relationship: BFO:0000051 UBERON:0012150 ! has part skeleton of digitopodium [Term] id: UBERON:0012141 @@ -31521,8 +31520,8 @@ def: "A digitopodium region that is part of a manus[Obol]. This includes the fin is_a: UBERON:0005451 ! segment of manus is_a: UBERON:0012140 ! digitopodium region intersection_of: UBERON:0012140 ! digitopodium region -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000051 UBERON:0012151 ! skeleton of manual digitopodium +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000051 UBERON:0012151 ! has part skeleton of manual digitopodium [Term] id: UBERON:0012142 @@ -31531,8 +31530,8 @@ def: "A digitopodium region that is part of a pes[Obol]. This includes the toes is_a: UBERON:0005445 ! segment of pes is_a: UBERON:0012140 ! digitopodium region intersection_of: UBERON:0012140 ! digitopodium region -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000051 UBERON:0012152 ! skeleton of pedal digitopodium +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000051 UBERON:0012152 ! has part skeleton of pedal digitopodium [Term] id: UBERON:0012150 @@ -31542,8 +31541,8 @@ synonym: "digitopodium" RELATED [] synonym: "skeleton of digits" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision -relationship: BFO:0000050 UBERON:0006717 ! autopodial skeleton -relationship: BFO:0000050 UBERON:0012140 ! digitopodium region +relationship: BFO:0000050 UBERON:0006717 ! part of autopodial skeleton +relationship: BFO:0000050 UBERON:0012140 ! part of digitopodium region [Term] id: UBERON:0012151 @@ -31552,9 +31551,9 @@ def: "A subdivision of the manus skeleton consisting of both manual acropodial s synonym: "manual digitopodium" RELATED [] is_a: UBERON:0012150 ! skeleton of digitopodium intersection_of: UBERON:0012150 ! skeleton of digitopodium -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0001442 ! skeleton of manus -relationship: BFO:0000050 UBERON:0012141 ! manual digitopodium region +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0001442 ! part of skeleton of manus +relationship: BFO:0000050 UBERON:0012141 ! part of manual digitopodium region [Term] id: UBERON:0012152 @@ -31563,9 +31562,9 @@ def: "A subdivision of the pes skeleton consisting of both pedal acropodial skel synonym: "pedal digitopodium" RELATED [] is_a: UBERON:0012150 ! skeleton of digitopodium intersection_of: UBERON:0012150 ! skeleton of digitopodium -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0001445 ! skeleton of pes -relationship: BFO:0000050 UBERON:0012142 ! pedal digitopodium region +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0001445 ! part of skeleton of pes +relationship: BFO:0000050 UBERON:0012142 ! part of pedal digitopodium region [Term] id: UBERON:0012168 @@ -31575,7 +31574,7 @@ synonym: "cord blood" RELATED [] synonym: "fetal blood" RELATED [] synonym: "umbilical cord blood" RELATED [] is_a: UBERON:0000178 ! blood -relationship: BFO:0000050 UBERON:0000323 ! late embryo +relationship: BFO:0000050 UBERON:0000323 ! part of late embryo [Term] id: UBERON:0012175 @@ -31587,8 +31586,8 @@ synonym: "facio-acoustic ganglion complex VII-VIII" EXACT [] synonym: "facio-acoustic VII-VIII ganglion complex" RELATED [] is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0010313 ! neural crest-derived structure -relationship: RO:0002202 UBERON:0003051 ! ear vesicle -relationship: RO:0002202 UBERON:0006232 ! facio-acoustic VII-VIII preganglion complex +relationship: RO:0002202 UBERON:0003051 ! develops_from ear vesicle +relationship: RO:0002202 UBERON:0006232 ! develops_from facio-acoustic VII-VIII preganglion complex [Term] id: UBERON:0012180 @@ -31596,8 +31595,8 @@ name: head or neck skin def: "A zone of skin that is part of a craniocervical region." [] is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0007811 ! craniocervical region -relationship: BFO:0000050 UBERON:0007811 ! craniocervical region +intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region +relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0012239 @@ -31610,8 +31609,8 @@ synonym: "set of urinary bladder blood vessels" EXACT [] is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001255 ! urinary bladder +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder [Term] id: UBERON:0012247 @@ -31620,8 +31619,8 @@ def: "mucus-secreting glands in the mucosa of the uterine cervix" [] synonym: "glandulae cervicales" EXACT [] is_a: UBERON:0002451 ! endometrial gland intersection_of: UBERON:0002365 ! exocrine gland -intersection_of: BFO:0000050 UBERON:0000002 ! uterine cervix -relationship: BFO:0000050 UBERON:0012248 ! cervical mucosa +intersection_of: BFO:0000050 UBERON:0000002 ! part of uterine cervix +relationship: BFO:0000050 UBERON:0012248 ! part of cervical mucosa [Term] id: UBERON:0012248 @@ -31629,8 +31628,8 @@ name: cervical mucosa def: "Lining of the head of the uterus (cervix); contains large branched glands; does not undergo sloughing." [] is_a: UBERON:0001295 ! endometrium intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000002 ! uterine cervix -relationship: BFO:0000050 UBERON:0000002 ! uterine cervix +intersection_of: BFO:0000050 UBERON:0000002 ! part of uterine cervix +relationship: BFO:0000050 UBERON:0000002 ! part of uterine cervix [Term] id: UBERON:0012250 @@ -31640,7 +31639,7 @@ synonym: "cervix columnar epithelium" RELATED [] is_a: UBERON:0004801 ! cervix epithelium is_a: UBERON:0006799 ! glandular epithelium intersection_of: UBERON:0006799 ! glandular epithelium -intersection_of: BFO:0000050 UBERON:0000002 ! uterine cervix +intersection_of: BFO:0000050 UBERON:0000002 ! part of uterine cervix [Term] id: UBERON:0012252 @@ -31649,8 +31648,8 @@ def: "The glandular epithelium that lines the endocervix." [] synonym: "endocervical glandular epithelium" EXACT [] is_a: UBERON:0012250 ! cervix glandular epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000458 ! endocervix -relationship: BFO:0000050 UBERON:0000458 ! endocervix +intersection_of: BFO:0000050 UBERON:0000458 ! part of endocervix +relationship: BFO:0000050 UBERON:0000458 ! part of endocervix [Term] id: UBERON:0012274 @@ -31667,7 +31666,7 @@ synonym: "mesoepithelium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000483 ! epithelium -intersection_of: RO:0002202 UBERON:0000926 ! mesoderm +intersection_of: RO:0002202 UBERON:0000926 ! develops_from mesoderm [Term] id: UBERON:0012276 @@ -31680,7 +31679,7 @@ is_a: UBERON:0006929 ! glandular columnar epithelium is_a: UBERON:0007589 ! ciliated columnar oviduct epithelium is_a: UBERON:0007592 ! ciliated columnar epithelium intersection_of: UBERON:0006799 ! glandular epithelium -intersection_of: BFO:0000050 UBERON:0004811 ! endometrium epithelium +intersection_of: BFO:0000050 UBERON:0004811 ! part of endometrium epithelium [Term] id: UBERON:0012278 @@ -31694,8 +31693,8 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001826 ! nasal cavity mucosa -relationship: BFO:0000050 UBERON:0001826 ! nasal cavity mucosa +intersection_of: BFO:0000050 UBERON:0001826 ! part of nasal cavity mucosa +relationship: BFO:0000050 UBERON:0001826 ! part of nasal cavity mucosa [Term] id: UBERON:0012279 @@ -31706,7 +31705,7 @@ synonym: "chromaffin paraganglia" RELATED [] synonym: "chromaffin paraganglion" RELATED [] synonym: "paraganglion" BROAD [] is_a: UBERON:0034978 ! paraganglion (generic) -relationship: BFO:0000050 UBERON:0010074 ! chromaffin system +relationship: BFO:0000050 UBERON:0010074 ! part of chromaffin system [Term] id: UBERON:0012292 @@ -31714,8 +31713,8 @@ name: embryonic cloacal fold def: "One of the pair of mesenchymal swellings (folds) located on either side of the cloacal membrane during the indifferent stage of embryonic development; cranial to the cloacal membrane the folds unite to form the genital tubercle; caudally the folds are subdivided into urogenital folds anteriorly and anal folds posteriorly" [] synonym: "cloacal fold" BROAD [] is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0000922 ! embryo -relationship: BFO:0000050 UBERON:0012469 ! external anal region +relationship: BFO:0000050 UBERON:0000922 ! part of embryo +relationship: BFO:0000050 UBERON:0012469 ! part of external anal region [Term] id: UBERON:0012299 @@ -31727,8 +31726,8 @@ synonym: "urethral mucosa" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0012313 @@ -31738,9 +31737,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015833 ! foregut epithelium -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm -relationship: BFO:0000050 UBERON:0007238 ! 1st arch maxillary component -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm +relationship: BFO:0000050 UBERON:0007238 ! part of 1st arch maxillary component +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0012314 @@ -31750,7 +31749,7 @@ synonym: "embryonic facial process" RELATED [] synonym: "facial primordium" RELATED [] synonym: "primordium of face" RELATED [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0000033 ! head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0012317 @@ -31769,8 +31768,8 @@ is_a: UBERON:0000161 ! orifice is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000161 ! orifice -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0012330 @@ -31781,8 +31780,8 @@ synonym: "naso-pharyngeal lymphoid tissue" EXACT [] is_a: UBERON:0001962 ! gut-associated lymphoid tissue is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue -intersection_of: BFO:0000050 UBERON:0001728 ! nasopharynx -relationship: BFO:0000050 UBERON:0001728 ! nasopharynx +intersection_of: BFO:0000050 UBERON:0001728 ! part of nasopharynx +relationship: BFO:0000050 UBERON:0001728 ! part of nasopharynx [Term] id: UBERON:0012332 @@ -31793,7 +31792,7 @@ synonym: "broad uterine ligament" EXACT [] synonym: "ligamentum latum uteri" RELATED [] is_a: UBERON:0000211 ! ligament is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:0002095 ! mesentery +relationship: BFO:0000050 UBERON:0002095 ! part of mesentery [Term] id: UBERON:0012344 @@ -31810,8 +31809,8 @@ synonym: "acropodial region" EXACT [] synonym: "acropodial segment of autopod" EXACT [] synonym: "set of digits" EXACT [] is_a: UBERON:0012139 ! segment of autopod -relationship: BFO:0000050 UBERON:0012140 ! digitopodium region -relationship: BFO:0000051 UBERON:0010543 ! acropodial skeleton +relationship: BFO:0000050 UBERON:0012140 ! part of digitopodium region +relationship: BFO:0000051 UBERON:0010543 ! has part acropodial skeleton [Term] id: UBERON:0012355 @@ -31836,9 +31835,9 @@ synonym: "set of fingers" EXACT [] is_a: UBERON:0005451 ! segment of manus is_a: UBERON:0012354 ! acropodium region intersection_of: UBERON:0012354 ! acropodium region -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0012141 ! manual digitopodium region -relationship: BFO:0000051 UBERON:0010688 ! skeleton of manual acropodium +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0012141 ! part of manual digitopodium region +relationship: BFO:0000051 UBERON:0010688 ! has part skeleton of manual acropodium [Term] id: UBERON:0012356 @@ -31856,9 +31855,9 @@ synonym: "toes set" EXACT [] is_a: UBERON:0005445 ! segment of pes is_a: UBERON:0012354 ! acropodium region intersection_of: UBERON:0012354 ! acropodium region -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0012142 ! pedal digitopodium region -relationship: BFO:0000051 UBERON:0010696 ! skeleton of pedal acropodium +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0012142 ! part of pedal digitopodium region +relationship: BFO:0000051 UBERON:0010696 ! has part skeleton of pedal acropodium [Term] id: UBERON:0012357 @@ -31867,8 +31866,8 @@ def: "A bone that is part of a the digitopodium skeleton - i.e. the acropodial s synonym: "digit bone" RELATED [] is_a: UBERON:0011250 ! autopod bone intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0012140 ! digitopodium region -relationship: BFO:0000050 UBERON:0012150 ! skeleton of digitopodium +intersection_of: BFO:0000050 UBERON:0012140 ! part of digitopodium region +relationship: BFO:0000050 UBERON:0012150 ! part of skeleton of digitopodium [Term] id: UBERON:0012358 @@ -31878,8 +31877,8 @@ synonym: "bone of forelimb digitopodium" EXACT [] is_a: UBERON:0005897 ! manus bone is_a: UBERON:0012357 ! digitopodium bone intersection_of: UBERON:0012357 ! digitopodium bone -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0012151 ! skeleton of manual digitopodium +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0012151 ! part of skeleton of manual digitopodium [Term] id: UBERON:0012359 @@ -31889,8 +31888,8 @@ synonym: "bone of hindlimb digitopodium" EXACT [] is_a: UBERON:0005899 ! pes bone is_a: UBERON:0012357 ! digitopodium bone intersection_of: UBERON:0012357 ! digitopodium bone -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0012152 ! skeleton of pedal digitopodium +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0012152 ! part of skeleton of pedal digitopodium [Term] id: UBERON:0012360 @@ -31900,14 +31899,14 @@ synonym: "jaw bone" EXACT [] is_a: UBERON:0003462 ! facial bone is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001474 ! bone element -intersection_of: BFO:0000050 UBERON:0011595 ! jaw region -relationship: BFO:0000050 UBERON:0001708 ! jaw skeleton +intersection_of: BFO:0000050 UBERON:0011595 ! part of jaw region +relationship: BFO:0000050 UBERON:0001708 ! part of jaw skeleton [Term] id: UBERON:0012361 name: internal anal region is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0001353 ! anal region +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0012367 @@ -31918,8 +31917,8 @@ synonym: "muscularis externa of intestine" EXACT [] synonym: "smooth muscle of intestine" RELATED [] is_a: UBERON:0018261 ! muscular coat of digestive tract intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000160 ! intestine -relationship: BFO:0000050 UBERON:0001262 ! wall of intestine +intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine +relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0012377 @@ -31931,8 +31930,8 @@ synonym: "muscularis propria of jejunum" RELATED [] synonym: "smooth muscle of jejunum" RELATED [] is_a: UBERON:0011201 ! muscle layer of small intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0002115 ! jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0002115 ! part of jejunum [Term] id: UBERON:0012378 @@ -31949,9 +31948,9 @@ synonym: "tunica muscularis (vesica urinaria)" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001255 ! urinary bladder -relationship: BFO:0000050 UBERON:0001256 ! wall of urinary bladder -relationship: BFO:0000051 UBERON:0004228 ! urinary bladder smooth muscle +intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder +relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder +relationship: BFO:0000051 UBERON:0004228 ! has part urinary bladder smooth muscle [Term] id: UBERON:0012416 @@ -31959,8 +31958,8 @@ name: respiratory system arterial smooth muscle is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0003643 ! respiratory system arterial blood vessel -relationship: BFO:0000050 UBERON:0003643 ! respiratory system arterial blood vessel +intersection_of: BFO:0000050 UBERON:0003643 ! part of respiratory system arterial blood vessel +relationship: BFO:0000050 UBERON:0003643 ! part of respiratory system arterial blood vessel [Term] id: UBERON:0012418 @@ -31968,8 +31967,8 @@ name: respiratory system venous smooth muscle def: "A smooth muscle tissue that is part of a respiratory system venous blood vessel." [] is_a: UBERON:0004696 ! venous system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0003476 ! respiratory system venous blood vessel -relationship: BFO:0000050 UBERON:0003476 ! respiratory system venous blood vessel +intersection_of: BFO:0000050 UBERON:0003476 ! part of respiratory system venous blood vessel +relationship: BFO:0000050 UBERON:0003476 ! part of respiratory system venous blood vessel [Term] id: UBERON:0012423 @@ -31985,7 +31984,7 @@ name: striated border microvillus layer def: "A microvillus layer that is striated and found in the intestine." [] synonym: "striated border" RELATED [] is_a: UBERON:0012423 ! layer of microvilli -relationship: BFO:0000050 UBERON:0000160 ! intestine +relationship: BFO:0000050 UBERON:0000160 ! part of intestine [Term] id: UBERON:0012429 @@ -31998,7 +31997,7 @@ synonym: "hemopoietic tissue" EXACT [] synonym: "textus haemopoieticus" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034769 ! lymphomyeloid tissue -relationship: BFO:0000050 UBERON:0002390 ! hematopoietic system +relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system [Term] id: UBERON:0012430 @@ -32011,9 +32010,9 @@ synonym: "tunica fibrosa" BROAD [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0010230 ! eyeball of camera-type eye -relationship: BFO:0000051 UBERON:0000964 ! cornea -relationship: BFO:0000051 UBERON:0001773 ! sclera +relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye +relationship: BFO:0000051 UBERON:0000964 ! has part cornea +relationship: BFO:0000051 UBERON:0001773 ! has part sclera [Term] id: UBERON:0012441 @@ -32024,8 +32023,8 @@ synonym: "peritubular endothelium" BROAD [] is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004819 ! kidney epithelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0005272 ! peritubular capillary -relationship: BFO:0000050 UBERON:0005272 ! peritubular capillary +intersection_of: BFO:0000050 UBERON:0005272 ! part of peritubular capillary +relationship: BFO:0000050 UBERON:0005272 ! part of peritubular capillary [Term] id: UBERON:0012464 @@ -32037,8 +32036,8 @@ synonym: "vent" RELATED [] is_a: UBERON:0000161 ! orifice is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000161 ! orifice -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012466 @@ -32046,8 +32045,8 @@ name: extraembryonic cavity synonym: "extraembryonic cavities" RELATED [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space -intersection_of: BFO:0000050 UBERON:0016887 ! entire extraembryonic component -relationship: BFO:0000050 UBERON:0016887 ! entire extraembryonic component +intersection_of: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component +relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0012468 @@ -32059,14 +32058,14 @@ synonym: "cloacal tooth" RELATED [] synonym: "perianal tooth" RELATED [] is_a: UBERON:0003913 ! tooth-like structure intersection_of: UBERON:0003913 ! tooth-like structure -intersection_of: BFO:0000050 UBERON:0001353 ! anal region -relationship: BFO:0000050 UBERON:0001353 ! anal region +intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0012469 name: external anal region is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0001353 ! anal region +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0012475 @@ -32079,8 +32078,8 @@ synonym: "set of bones of upper limb" RELATED [] synonym: "skeleton of anterior limb/fin and girdle" RELATED [] synonym: "upper limb skeleton" RELATED [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0010708 ! pectoral complex +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex [Term] id: UBERON:0012476 @@ -32093,8 +32092,8 @@ synonym: "pelvic complex skeleton" RELATED [] synonym: "set of bones of lower limb" RELATED [] synonym: "skeleton of posterior limb/fin and girdle" RELATED [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0002091 ! appendicular skeleton -relationship: BFO:0000050 UBERON:0010709 ! pelvic complex +relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton +relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex [Term] id: UBERON:0012478 @@ -32103,8 +32102,8 @@ def: "A gland that is part of a cloaca." [] is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012480 @@ -32122,8 +32121,8 @@ synonym: "organ mucosa of cloaca" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012481 @@ -32135,8 +32134,8 @@ is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012482 @@ -32147,8 +32146,8 @@ synonym: "cloacal submucosa" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012483 @@ -32161,8 +32160,8 @@ synonym: "serous membrane of cloaca" EXACT [] synonym: "visceral peritoneum of cloaca" EXACT [] is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012485 @@ -32170,8 +32169,8 @@ name: cloacal villus synonym: "cloacal villi" EXACT [] is_a: UBERON:0012423 ! layer of microvilli intersection_of: UBERON:0012423 ! layer of microvilli -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012486 @@ -32182,8 +32181,8 @@ synonym: "smooth muscle of cloaca" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018261 ! muscular coat of digestive tract intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012487 @@ -32194,8 +32193,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0000996 ! vagina -relationship: BFO:0000050 UBERON:0000996 ! vagina +intersection_of: BFO:0000050 UBERON:0000996 ! part of vagina +relationship: BFO:0000050 UBERON:0000996 ! part of vagina [Term] id: UBERON:0012488 @@ -32207,8 +32206,8 @@ synonym: "muscularis propria of duodenum" RELATED [] synonym: "smooth muscle of duodenum" RELATED [] is_a: UBERON:0011201 ! muscle layer of small intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002114 ! duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0012489 @@ -32222,8 +32221,8 @@ synonym: "muscularis externa of colon" EXACT [] synonym: "tunica muscularis coli" EXACT [] is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001155 ! colon -relationship: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon +relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0012490 @@ -32238,8 +32237,8 @@ synonym: "muscularis propria of anal canal" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0000159 ! anal canal -relationship: BFO:0000050 UBERON:0000159 ! anal canal +intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal +relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0012498 @@ -32251,8 +32250,8 @@ synonym: "serosa of vermiform appendix" EXACT [] synonym: "visceral peritoneum of vermiform appendix" EXACT [] is_a: UBERON:0003335 ! serosa of colon intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001154 ! vermiform appendix -relationship: BFO:0000050 UBERON:0001154 ! vermiform appendix +intersection_of: BFO:0000050 UBERON:0001154 ! part of vermiform appendix +relationship: BFO:0000050 UBERON:0001154 ! part of vermiform appendix [Term] id: UBERON:0012499 @@ -32268,8 +32267,8 @@ synonym: "uterine tube serosa" EXACT [] is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0003889 ! fallopian tube -relationship: BFO:0000050 UBERON:0003889 ! fallopian tube +intersection_of: BFO:0000050 UBERON:0003889 ! part of fallopian tube +relationship: BFO:0000050 UBERON:0003889 ! part of fallopian tube [Term] id: UBERON:0012503 @@ -32278,9 +32277,9 @@ def: "A serous membrane that is part of a fundus of stomach." [] synonym: "visceral peritoneum of fundus of stomach" EXACT [] is_a: UBERON:0001201 ! serosa of stomach intersection_of: UBERON:0000042 ! serous membrane -intersection_of: BFO:0000050 UBERON:0001160 ! fundus of stomach -relationship: BFO:0000050 UBERON:0001160 ! fundus of stomach -relationship: BFO:0000050 UBERON:0001201 ! serosa of stomach +intersection_of: BFO:0000050 UBERON:0001160 ! part of fundus of stomach +relationship: BFO:0000050 UBERON:0001160 ! part of fundus of stomach +relationship: BFO:0000050 UBERON:0001201 ! part of serosa of stomach [Term] id: UBERON:0012504 @@ -32294,8 +32293,8 @@ synonym: "tunica adventitia (esophagus)" EXACT [] synonym: "tunica adventitia oesophageae" EXACT [] is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia -intersection_of: BFO:0000050 UBERON:0001043 ! esophagus -relationship: BFO:0000050 UBERON:0001043 ! esophagus +intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus +relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0012615 @@ -32304,8 +32303,8 @@ def: "A smooth muscle tissue that is part of a umbilical cord." [] is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002331 ! umbilical cord -relationship: BFO:0000050 UBERON:0002331 ! umbilical cord +intersection_of: BFO:0000050 UBERON:0002331 ! part of umbilical cord +relationship: BFO:0000050 UBERON:0002331 ! part of umbilical cord [Term] id: UBERON:0013121 @@ -32318,8 +32317,8 @@ synonym: "proximal epiphysis of phalanx of toe" EXACT [] is_a: UBERON:0004447 ! proximal epiphysis of phalanx is_a: UBERON:0011973 ! epiphysis of phalanx of pes intersection_of: UBERON:0004380 ! proximal epiphysis -intersection_of: BFO:0000050 UBERON:0001449 ! phalanx of pes -relationship: BFO:0000050 UBERON:0001449 ! phalanx of pes +intersection_of: BFO:0000050 UBERON:0001449 ! part of phalanx of pes +relationship: BFO:0000050 UBERON:0001449 ! part of phalanx of pes [Term] id: UBERON:0013126 @@ -32329,7 +32328,7 @@ synonym: "abdominal vein" EXACT [] is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0013139 @@ -32342,8 +32341,8 @@ is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0008845 ! nonskeletal ligament -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0002107 ! liver +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0013140 @@ -32352,15 +32351,15 @@ def: "Any vein within the general circulation that transports blood back to the synonym: "systemic venous tree organ part" EXACT [] is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein -intersection_of: BFO:0000050 UBERON:0004581 ! systemic venous system -relationship: BFO:0000050 UBERON:0004581 ! systemic venous system +intersection_of: BFO:0000050 UBERON:0004581 ! part of systemic venous system +relationship: BFO:0000050 UBERON:0004581 ! part of systemic venous system [Term] id: UBERON:0013149 name: hindbrain vesicle synonym: "rhombencephalic vesicle" EXACT [] is_a: UBERON:0013150 ! future brain vesicle -relationship: BFO:0000050 UBERON:0007277 ! presumptive hindbrain +relationship: BFO:0000050 UBERON:0007277 ! part of presumptive hindbrain [Term] id: UBERON:0013150 @@ -32371,8 +32370,8 @@ synonym: "primary brain vesicle" NARROW [] synonym: "primitive brain vesicle" EXACT [] synonym: "secondary brain vesicle" NARROW [] is_a: UBERON:0010064 ! open anatomical space -relationship: BFO:0000050 UBERON:0005281 ! ventricular system of central nervous system -relationship: BFO:0000050 UBERON:0006238 ! future brain +relationship: BFO:0000050 UBERON:0005281 ! part of ventricular system of central nervous system +relationship: BFO:0000050 UBERON:0006238 ! part of future brain [Term] id: UBERON:0013158 @@ -32381,8 +32380,8 @@ def: "A gland that is part of a foregut-midgut junction." [] synonym: "gland of foregut-midgut junction" EXACT [] is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0006235 ! foregut-midgut junction -relationship: BFO:0000050 UBERON:0006235 ! foregut-midgut junction +intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction +relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0013159 @@ -32391,9 +32390,9 @@ synonym: "mantle layer epithalamus" EXACT [] synonym: "mantle layer of epithalamus" EXACT [] is_a: UBERON:0004061 ! neural tube mantle layer intersection_of: UBERON:0004061 ! neural tube mantle layer -intersection_of: BFO:0000050 UBERON:0001899 ! epithalamus -relationship: BFO:0000050 UBERON:0001899 ! epithalamus -relationship: RO:0002202 UBERON:0009580 ! diencephalon mantle layer +intersection_of: BFO:0000050 UBERON:0001899 ! part of epithalamus +relationship: BFO:0000050 UBERON:0001899 ! part of epithalamus +relationship: RO:0002202 UBERON:0009580 ! develops_from diencephalon mantle layer [Term] id: UBERON:0013191 @@ -32404,8 +32403,8 @@ synonym: "cortex ovarii (zona parenchymatosa)" EXACT [] is_a: UBERON:0001851 ! cortex is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001851 ! cortex -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000050 UBERON:0006960 ! ovary stroma +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000050 UBERON:0006960 ! part of ovary stroma [Term] id: UBERON:0013192 @@ -32417,8 +32416,8 @@ synonym: "zona vasculosa of Waldeyer" RELATED [] is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000958 ! medulla of organ -intersection_of: BFO:0000050 UBERON:0000992 ! ovary -relationship: BFO:0000050 UBERON:0000992 ! ovary +intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary +relationship: BFO:0000050 UBERON:0000992 ! part of ovary [Term] id: UBERON:0013229 @@ -32429,8 +32428,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015152 ! gland of ocular region intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid -relationship: BFO:0000050 UBERON:0001711 ! eyelid +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: BFO:0000050 UBERON:0001711 ! part of eyelid [Term] id: UBERON:0013231 @@ -32439,7 +32438,7 @@ def: "Any of the sebaceous glands that are in the eyelid. Examples: gland of Zei is_a: UBERON:0003484 ! eye sebaceous gland is_a: UBERON:0013229 ! eyelid gland intersection_of: UBERON:0001821 ! sebaceous gland -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid [Term] id: UBERON:0013232 @@ -32448,8 +32447,8 @@ def: "The secretory unit of a serous gland. The acinar portion is composed of se synonym: "acinus of serous gland" EXACT [] is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0000409 ! serous gland -relationship: BFO:0000050 UBERON:0000409 ! serous gland +intersection_of: BFO:0000050 UBERON:0000409 ! part of serous gland +relationship: BFO:0000050 UBERON:0000409 ! part of serous gland [Term] id: UBERON:0013241 @@ -32459,7 +32458,7 @@ synonym: "sulcus urethralis primarius" EXACT [] synonym: "urethral groove" EXACT [] synonym: "urethral sulcus" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: RO:0002202 UBERON:0004876 ! urogenital fold +relationship: RO:0002202 UBERON:0004876 ! develops_from urogenital fold [Term] id: UBERON:0013247 @@ -32470,10 +32469,10 @@ is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0003914 ! epithelial tube -intersection_of: BFO:0000050 UBERON:0000079 ! male reproductive system -intersection_of: RO:0002202 UBERON:0003890 ! Mullerian duct -relationship: BFO:0000050 UBERON:0000079 ! male reproductive system -relationship: RO:0002202 UBERON:0003890 ! Mullerian duct +intersection_of: BFO:0000050 UBERON:0000079 ! part of male reproductive system +intersection_of: RO:0002202 UBERON:0003890 ! develops_from Mullerian duct +relationship: BFO:0000050 UBERON:0000079 ! part of male reproductive system +relationship: RO:0002202 UBERON:0003890 ! develops_from Mullerian duct [Term] id: UBERON:0013478 @@ -32483,8 +32482,8 @@ synonym: "caecal tonsil" EXACT [] synonym: "cecal GALT" RELATED [] is_a: UBERON:0001962 ! gut-associated lymphoid tissue intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue -intersection_of: BFO:0000050 UBERON:0001153 ! caecum -relationship: BFO:0000050 UBERON:0000314 ! cecum mucosa +intersection_of: BFO:0000050 UBERON:0001153 ! part of caecum +relationship: BFO:0000050 UBERON:0000314 ! part of cecum mucosa [Term] id: UBERON:0013479 @@ -32495,7 +32494,7 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0004638 ! blood vessel endothelium -intersection_of: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0013481 @@ -32506,8 +32505,8 @@ synonym: "ileal crypt of Lieberkuhn" EXACT [] synonym: "ileal intestinal crypt" EXACT [] is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0008344 ! intestinal villus of ileum +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0008344 ! part of intestinal villus of ileum [Term] id: UBERON:0013482 @@ -32517,8 +32516,8 @@ synonym: "duodenal crypt" EXACT [] synonym: "duodenal crypt of Lieberkuhn" EXACT [] is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0008342 ! intestinal villus of duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0008342 ! part of intestinal villus of duodenum [Term] id: UBERON:0013483 @@ -32528,8 +32527,8 @@ synonym: "jejunal crypt" EXACT [] synonym: "jejunal crypt of Lieberkuhn" EXACT [] is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0008343 ! intestinal villus of jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0008343 ! part of intestinal villus of jejunum [Term] id: UBERON:0013485 @@ -32539,8 +32538,8 @@ synonym: "colonic crypt" EXACT [] synonym: "colonic crypt of Lieberkuhn" EXACT [] is_a: UBERON:0001984 ! crypt of Lieberkuhn of large intestine intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0001155 ! colon -relationship: BFO:0000050 UBERON:0000317 ! colonic mucosa +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon +relationship: BFO:0000050 UBERON:0000317 ! part of colonic mucosa [Term] id: UBERON:0013486 @@ -32550,8 +32549,8 @@ synonym: "appendiceal crypt" EXACT [] synonym: "appendiceal crypt of Lieberkuhn" EXACT [] is_a: UBERON:0013485 ! crypt of Lieberkuhn of colon intersection_of: UBERON:0001983 ! crypt of Lieberkuhn -intersection_of: BFO:0000050 UBERON:0001154 ! vermiform appendix -relationship: BFO:0000050 UBERON:0004989 ! mucosa of appendix +intersection_of: BFO:0000050 UBERON:0001154 ! part of vermiform appendix +relationship: BFO:0000050 UBERON:0004989 ! part of mucosa of appendix [Term] id: UBERON:0013501 @@ -32561,7 +32560,7 @@ synonym: "sphincter cloacae" EXACT [] is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0014783 ! cloacal muscle intersection_of: UBERON:0004590 ! sphincter muscle -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0013515 @@ -32574,15 +32573,15 @@ synonym: "uterine tube zone" EXACT [] synonym: "zone of uterine tube" EXACT [] is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube -relationship: BFO:0000050 UBERON:0000993 ! oviduct +relationship: BFO:0000050 UBERON:0000993 ! part of oviduct [Term] id: UBERON:0013522 name: subdivision of tube is_a: UBERON:0000064 ! organ part -relationship: BFO:0000050 UBERON:0000025 ! tube -relationship: BFO:0000051 UBERON:0000060 ! anatomical wall -relationship: BFO:0000051 UBERON:0000464 ! anatomical space +relationship: BFO:0000050 UBERON:0000025 ! part of tube +relationship: BFO:0000051 UBERON:0000060 ! has part anatomical wall +relationship: BFO:0000051 UBERON:0000464 ! has part anatomical space [Term] id: UBERON:0013636 @@ -32593,9 +32592,9 @@ synonym: "villous epithelium" RELATED [] synonym: "villus epithelium" RELATED [] is_a: UBERON:0001902 ! epithelium of small intestine intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001213 ! intestinal villus -relationship: BFO:0000050 UBERON:0001213 ! intestinal villus -relationship: BFO:0000050 UBERON:0001902 ! epithelium of small intestine +intersection_of: BFO:0000050 UBERON:0001213 ! part of intestinal villus +relationship: BFO:0000050 UBERON:0001213 ! part of intestinal villus +relationship: BFO:0000050 UBERON:0001902 ! part of epithelium of small intestine [Term] id: UBERON:0013685 @@ -32607,8 +32606,8 @@ synonym: "foramen of skull" EXACT [] synonym: "foramina of the skull" RELATED [] is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0005744 ! bone foramen -intersection_of: BFO:0000050 UBERON:0003129 ! skull -relationship: BFO:0000050 UBERON:0003129 ! skull +intersection_of: BFO:0000050 UBERON:0003129 ! part of skull +relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0013686 @@ -32616,7 +32615,7 @@ name: anatomical conduit space def: "An anatomical space which is the lumen of some anatomical conduit and connects two or more spaces together[FMA,modified]." [] synonym: "foramen space" NARROW [] is_a: UBERON:0000464 ! anatomical space -relationship: BFO:0000050 UBERON:0004111 ! anatomical conduit +relationship: BFO:0000050 UBERON:0004111 ! part of anatomical conduit [Term] id: UBERON:0013687 @@ -32625,8 +32624,8 @@ def: "Periosteum that is part of a skull." [] synonym: "periosteum externum cranii" EXACT [] is_a: UBERON:0002515 ! periosteum intersection_of: UBERON:0002515 ! periosteum -intersection_of: BFO:0000050 UBERON:0003129 ! skull -relationship: BFO:0000050 UBERON:0003129 ! skull +intersection_of: BFO:0000050 UBERON:0003129 ! part of skull +relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0013688 @@ -32635,8 +32634,8 @@ def: "A germinal center that is part of a tonsil." [] synonym: "tonsil reaction center" RELATED [] is_a: UBERON:0010754 ! germinal center intersection_of: UBERON:0010754 ! germinal center -intersection_of: BFO:0000050 UBERON:0002372 ! tonsil -relationship: BFO:0000050 UBERON:0002372 ! tonsil +intersection_of: BFO:0000050 UBERON:0002372 ! part of tonsil +relationship: BFO:0000050 UBERON:0002372 ! part of tonsil [Term] id: UBERON:0013689 @@ -32647,8 +32646,8 @@ synonym: "lymphatic tissue of appendix" EXACT [] synonym: "lymphatic tissue of vermiform appendix" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue intersection_of: UBERON:0001744 ! lymphoid tissue -intersection_of: BFO:0000050 UBERON:0001154 ! vermiform appendix -relationship: BFO:0000050 UBERON:0001154 ! vermiform appendix +intersection_of: BFO:0000050 UBERON:0001154 ! part of vermiform appendix +relationship: BFO:0000050 UBERON:0001154 ! part of vermiform appendix [Term] id: UBERON:0013694 @@ -32658,8 +32657,8 @@ synonym: "cerebromicrovascular endothelium" RELATED [] is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0000955 ! brain -relationship: BFO:0000050 UBERON:0000955 ! brain +intersection_of: BFO:0000050 UBERON:0000955 ! part of brain +relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0013695 @@ -32674,7 +32673,7 @@ synonym: "colorectal endothelium" RELATED [] is_a: UBERON:0000397 ! colonic epithelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0001155 ! colon +intersection_of: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0013696 @@ -32684,8 +32683,8 @@ synonym: "epithelium of tonsil" RELATED [] synonym: "tonsil epithelial cell" RELATED [] is_a: UBERON:0003351 ! pharyngeal epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002372 ! tonsil -relationship: BFO:0000050 UBERON:0002372 ! tonsil +intersection_of: BFO:0000050 UBERON:0002372 ! part of tonsil +relationship: BFO:0000050 UBERON:0002372 ! part of tonsil [Term] id: UBERON:0013697 @@ -32695,15 +32694,15 @@ synonym: "epithelium of exocrine pancreas" RELATED [] synonym: "exocrine pancreas epithelial cell" RELATED [] is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000017 ! exocrine pancreas -relationship: BFO:0000050 UBERON:0000017 ! exocrine pancreas +intersection_of: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas +relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas [Term] id: UBERON:0013700 name: axial musculature def: "Musculature of the head and neck, spine, and ribs." [] is_a: UBERON:0001015 ! musculature -relationship: BFO:0000050 UBERON:0013701 ! main body axis +relationship: BFO:0000050 UBERON:0013701 ! part of main body axis [Term] id: UBERON:0013701 @@ -32718,7 +32717,7 @@ def: "The region of the organism associated with the visceral organs." [] synonym: "body" RELATED [] synonym: "whole body" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0013701 ! main body axis +relationship: BFO:0000050 UBERON:0013701 ! part of main body axis [Term] id: UBERON:0013703 @@ -32728,7 +32727,7 @@ synonym: "skin projection" NARROW [] is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0006003 ! integumentary adnexa intersection_of: UBERON:0004529 ! anatomical projection -intersection_of: BFO:0000050 UBERON:0002416 ! integumental system +intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0013704 @@ -32738,8 +32737,8 @@ synonym: "chordal canal" RELATED [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit -intersection_of: BFO:0000050 UBERON:0006268 ! notochordal process -relationship: BFO:0000050 UBERON:0006268 ! notochordal process +intersection_of: BFO:0000050 UBERON:0006268 ! part of notochordal process +relationship: BFO:0000050 UBERON:0006268 ! part of notochordal process [Term] id: UBERON:0013749 @@ -32750,8 +32749,8 @@ synonym: "humeral metaphysis" EXACT [] is_a: UBERON:0001438 ! metaphysis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis -intersection_of: BFO:0000050 UBERON:0000976 ! humerus -relationship: BFO:0000050 UBERON:0000976 ! humerus +intersection_of: BFO:0000050 UBERON:0000976 ! part of humerus +relationship: BFO:0000050 UBERON:0000976 ! part of humerus [Term] id: UBERON:0013754 @@ -32761,8 +32760,8 @@ synonym: "layer of skin" NARROW [] synonym: "skin layer" NARROW [] is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer -intersection_of: BFO:0000050 UBERON:0002416 ! integumental system -relationship: BFO:0000050 UBERON:0002416 ! integumental system +intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system +relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0013755 @@ -32773,8 +32772,8 @@ synonym: "blood in artery" EXACT [] synonym: "portion of arterial blood" EXACT [] is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood -intersection_of: BFO:0000050 UBERON:0001637 ! artery -relationship: BFO:0000050 UBERON:0001637 ! artery +intersection_of: BFO:0000050 UBERON:0001637 ! part of artery +relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0013756 @@ -32785,8 +32784,8 @@ synonym: "portion of venous blood" EXACT [] synonym: "venous blood" EXACT [] is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood -intersection_of: BFO:0000050 UBERON:0001638 ! vein -relationship: BFO:0000050 UBERON:0001638 ! vein +intersection_of: BFO:0000050 UBERON:0001638 ! part of vein +relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0013757 @@ -32797,8 +32796,8 @@ synonym: "portion of blood in capillary" EXACT [] synonym: "portion of capillary blood" EXACT [] is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood -intersection_of: BFO:0000050 UBERON:0001982 ! capillary -relationship: BFO:0000050 UBERON:0001982 ! capillary +intersection_of: BFO:0000050 UBERON:0001982 ! part of capillary +relationship: BFO:0000050 UBERON:0001982 ! part of capillary [Term] id: UBERON:0013758 @@ -32809,8 +32808,8 @@ synonym: "uterine cervix opening" RELATED [] is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000161 ! orifice -intersection_of: BFO:0000050 UBERON:0000002 ! uterine cervix -relationship: BFO:0000050 UBERON:0000002 ! uterine cervix +intersection_of: BFO:0000050 UBERON:0000002 ! part of uterine cervix +relationship: BFO:0000050 UBERON:0000002 ! part of uterine cervix [Term] id: UBERON:0013765 @@ -32820,8 +32819,8 @@ synonym: "digestive organ" EXACT [] synonym: "digestive system organ" EXACT [] is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ -intersection_of: BFO:0000050 UBERON:0001007 ! digestive system -relationship: BFO:0000050 UBERON:0001007 ! digestive system +intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system +relationship: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0013768 @@ -32840,8 +32839,8 @@ synonym: "uterine cavity" EXACT [] synonym: "uterine space" EXACT [] is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity -intersection_of: BFO:0000050 UBERON:0000995 ! uterus -relationship: BFO:0000050 UBERON:0000995 ! uterus +intersection_of: BFO:0000050 UBERON:0000995 ! part of uterus +relationship: BFO:0000050 UBERON:0000995 ! part of uterus [Term] id: UBERON:0014371 @@ -32849,7 +32848,7 @@ name: future telencephalon def: "Embryonic structure that gives rise to the telencephalon." [] synonym: "presumptive telencephalon" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0006240 ! future forebrain +relationship: BFO:0000050 UBERON:0006240 ! part of future forebrain [Term] id: UBERON:0014387 @@ -32861,7 +32860,7 @@ synonym: "neural crest mesenchyme" EXACT [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: RO:0002202 UBERON:0002342 ! neural crest +intersection_of: RO:0002202 UBERON:0002342 ! develops_from neural crest [Term] id: UBERON:0014388 @@ -32873,8 +32872,8 @@ synonym: "epithelium of renal collecting tubule" EXACT [] is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0004211 ! nephron epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001232 ! collecting duct of renal tubule -relationship: BFO:0000050 UBERON:0001232 ! collecting duct of renal tubule +intersection_of: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule +relationship: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule [Term] id: UBERON:0014390 @@ -32886,8 +32885,8 @@ synonym: "muscularis propria of ileum" RELATED [] synonym: "smooth muscle of ileum" RELATED [] is_a: UBERON:0011201 ! muscle layer of small intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0002116 ! ileum +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0002116 ! part of ileum [Term] id: UBERON:0014401 @@ -32899,7 +32898,7 @@ synonym: "venous blood vessel of kidney" EXACT [] is_a: UBERON:0003517 ! kidney blood vessel is_a: UBERON:0003920 ! venous blood vessel intersection_of: UBERON:0003920 ! venous blood vessel -intersection_of: BFO:0000050 UBERON:0002113 ! kidney +intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0014452 @@ -32909,7 +32908,7 @@ synonym: "lingual gustatory epithelium" EXACT [] is_a: UBERON:0002926 ! gustatory epithelium is_a: UBERON:0003357 ! epithelium of tongue intersection_of: UBERON:0002926 ! gustatory epithelium -intersection_of: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0014455 @@ -32921,8 +32920,8 @@ synonym: "subcutaneous fat of abdominal region" EXACT [] is_a: UBERON:0002190 ! subcutaneous adipose tissue is_a: UBERON:0007808 ! adipose tissue of abdominal region intersection_of: UBERON:0001013 ! adipose tissue -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen -intersection_of: BFO:0000050 UBERON:0002072 ! hypodermis +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen +intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0014477 @@ -32932,8 +32931,8 @@ synonym: "skeleton of thorax" EXACT [] synonym: "thoracic part of axial skeleton" EXACT [] synonym: "thoracic skeleton" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton -relationship: BFO:0000050 UBERON:0000915 ! thoracic segment of trunk -relationship: BFO:0000050 UBERON:0002090 ! postcranial axial skeleton +relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk +relationship: BFO:0000050 UBERON:0002090 ! part of postcranial axial skeleton [Term] id: UBERON:0014530 @@ -32943,8 +32942,8 @@ synonym: "neuraxis lamina" BROAD [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer -intersection_of: BFO:0000050 UBERON:0002316 ! white matter -relationship: BFO:0000050 UBERON:0002316 ! white matter +intersection_of: BFO:0000050 UBERON:0002316 ! part of white matter +relationship: BFO:0000050 UBERON:0002316 ! part of white matter [Term] id: UBERON:0014531 @@ -32953,8 +32952,8 @@ synonym: "diencephalon lamina" BROAD [] synonym: "lamina of diencephalon" BROAD [] is_a: UBERON:0014530 ! white matter lamina of neuraxis intersection_of: UBERON:0014530 ! white matter lamina of neuraxis -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0014532 @@ -32963,8 +32962,8 @@ synonym: "cerebral hemisphere lamina" BROAD [] synonym: "lamina of cerebral hemisphere" BROAD [] is_a: UBERON:0014530 ! white matter lamina of neuraxis intersection_of: UBERON:0014530 ! white matter lamina of neuraxis -intersection_of: BFO:0000050 UBERON:0001869 ! cerebral hemisphere -relationship: BFO:0000050 UBERON:0001869 ! cerebral hemisphere +intersection_of: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere +relationship: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere [Term] id: UBERON:0014540 @@ -32983,8 +32982,8 @@ synonym: "white lamina of cerebellum" EXACT [] synonym: "white laminae of cerebellum" EXACT [] is_a: UBERON:0014530 ! white matter lamina of neuraxis intersection_of: UBERON:0014530 ! white matter lamina of neuraxis -intersection_of: BFO:0000050 UBERON:0002037 ! cerebellum -relationship: BFO:0000050 UBERON:0002037 ! cerebellum +intersection_of: BFO:0000050 UBERON:0002037 ! part of cerebellum +relationship: BFO:0000050 UBERON:0002037 ! part of cerebellum [Term] id: UBERON:0014649 @@ -32997,8 +32996,8 @@ synonym: "white substance of medulla" EXACT [] is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0019262 ! white matter of myelencephalon intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001896 ! medulla oblongata -relationship: BFO:0000050 UBERON:0001896 ! medulla oblongata +intersection_of: BFO:0000050 UBERON:0001896 ! part of medulla oblongata +relationship: BFO:0000050 UBERON:0001896 ! part of medulla oblongata [Term] id: UBERON:0014699 @@ -33012,7 +33011,7 @@ id: UBERON:0014701 name: extraembryonic vascular system def: "A vascular system that overlaps a umbilical cord and is part of a entire extraembryonic component." [] is_a: UBERON:0007798 ! vascular system -relationship: BFO:0000050 UBERON:0016887 ! entire extraembryonic component +relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0014702 @@ -33022,9 +33021,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0004066 ! frontonasal prominence -relationship: BFO:0000050 UBERON:0004066 ! frontonasal prominence -relationship: RO:0002202 UBERON:0000076 ! external ectoderm +intersection_of: BFO:0000050 UBERON:0004066 ! part of frontonasal prominence +relationship: BFO:0000050 UBERON:0004066 ! part of frontonasal prominence +relationship: RO:0002202 UBERON:0000076 ! develops_from external ectoderm [Term] id: UBERON:0014703 @@ -33033,9 +33032,9 @@ def: "A unilaminar epithelium that develops_from a ectoderm and is part of a ana is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium -intersection_of: BFO:0000050 UBERON:0001353 ! anal region -intersection_of: RO:0002202 UBERON:0000924 ! ectoderm -relationship: BFO:0000050 UBERON:0001353 ! anal region +intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region +intersection_of: RO:0002202 UBERON:0000924 ! develops_from ectoderm +relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0014706 @@ -33044,14 +33043,14 @@ synonym: "metanephros primitive collecting ducts" EXACT [] synonym: "primitive collecting duct" EXACT [] is_a: UBERON:0007501 ! arborizing epithelial duct system is_a: UBERON:0012275 ! meso-epithelium -relationship: RO:0002202 UBERON:0000084 ! ureteric bud +relationship: RO:0002202 UBERON:0000084 ! develops_from ureteric bud [Term] id: UBERON:0014716 name: interlobular duct def: "A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory." [] is_a: UBERON:0035050 ! excretory duct -relationship: BFO:0000050 UBERON:0002384 ! connective tissue +relationship: BFO:0000050 UBERON:0002384 ! part of connective tissue [Term] id: UBERON:0014717 @@ -33061,8 +33060,8 @@ synonym: "acinus of mucuous gland" EXACT [] synonym: "mucus acinus" EXACT [] is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus -intersection_of: BFO:0000050 UBERON:0000414 ! mucous gland -relationship: BFO:0000050 UBERON:0000414 ! mucous gland +intersection_of: BFO:0000050 UBERON:0000414 ! part of mucous gland +relationship: BFO:0000050 UBERON:0000414 ! part of mucous gland [Term] id: UBERON:0014719 @@ -33071,8 +33070,8 @@ def: "A duct that is located within a lobule, with no more connective tissue int synonym: "intralobular ductule" RELATED [] is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0009911 ! lobule -relationship: BFO:0000050 UBERON:0009911 ! lobule +intersection_of: BFO:0000050 UBERON:0009911 ! part of lobule +relationship: BFO:0000050 UBERON:0009911 ! part of lobule [Term] id: UBERON:0014775 @@ -33084,8 +33083,8 @@ synonym: "future prosencephalon" RELATED [] synonym: "segment of forebrain" BROAD [] is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere -intersection_of: BFO:0000050 UBERON:0006240 ! future forebrain -relationship: BFO:0000050 UBERON:0006240 ! future forebrain +intersection_of: BFO:0000050 UBERON:0006240 ! part of future forebrain +relationship: BFO:0000050 UBERON:0006240 ! part of future forebrain [Term] id: UBERON:0014776 @@ -33100,8 +33099,8 @@ synonym: "neuromere of mesomere group" EXACT [] synonym: "segment of midbrain" BROAD [] is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere -intersection_of: BFO:0000050 UBERON:0009616 ! presumptive midbrain -relationship: BFO:0000050 UBERON:0009616 ! presumptive midbrain +intersection_of: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain +relationship: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain [Term] id: UBERON:0014777 @@ -33112,8 +33111,8 @@ synonym: "spinal cord segment" RELATED [] synonym: "spinal neuromeres" EXACT [] is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere -intersection_of: BFO:0000050 UBERON:0006241 ! future spinal cord -relationship: BFO:0000050 UBERON:0006241 ! future spinal cord +intersection_of: BFO:0000050 UBERON:0006241 ! part of future spinal cord +relationship: BFO:0000050 UBERON:0006241 ! part of future spinal cord [Term] id: UBERON:0014783 @@ -33123,8 +33122,8 @@ is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001630 ! muscle organ -intersection_of: BFO:0000050 UBERON:0000162 ! cloaca -relationship: BFO:0000050 UBERON:0000162 ! cloaca +intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca +relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0014790 @@ -33136,8 +33135,8 @@ synonym: "septum of tongue" RELATED [] synonym: "tongue septum" RELATED [] is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum -intersection_of: BFO:0000050 UBERON:0001723 ! tongue -relationship: BFO:0000050 UBERON:0001723 ! tongue +intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue +relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0014791 @@ -33149,8 +33148,8 @@ synonym: "musculature of arm" RELATED [] synonym: "set of muscles of arm" RELATED [] is_a: UBERON:0004474 ! musculature of arm intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0003822 ! forelimb stylopod -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +intersection_of: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0014792 @@ -33161,8 +33160,8 @@ synonym: "musculature of lower limb" NARROW [] synonym: "musculi membri inferioris" NARROW [] is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0010709 ! pelvic complex -relationship: BFO:0000050 UBERON:0010709 ! pelvic complex +intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex +relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex [Term] id: UBERON:0014793 @@ -33175,8 +33174,8 @@ synonym: "set of muscles of upper limb" NARROW [] synonym: "upper limb musculature" NARROW [] is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature -intersection_of: BFO:0000050 UBERON:0010708 ! pectoral complex -relationship: BFO:0000050 UBERON:0010708 ! pectoral complex +intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex +relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex [Term] id: UBERON:0014794 @@ -33184,8 +33183,8 @@ name: pectoral appendage muscle def: "Any muscle organ that is part of a pectoral appendage (forelimb or pectoral fin)." [] is_a: UBERON:0010891 ! pectoral complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0004710 ! pectoral appendage -relationship: BFO:0000050 UBERON:0007269 ! pectoral appendage musculature +intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage +relationship: BFO:0000050 UBERON:0007269 ! part of pectoral appendage musculature [Term] id: UBERON:0014795 @@ -33193,8 +33192,8 @@ name: pelvic appendage muscle def: "Any muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin)." [] is_a: UBERON:0010890 ! pelvic complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ -intersection_of: BFO:0000050 UBERON:0004709 ! pelvic appendage -relationship: BFO:0000050 UBERON:0007270 ! pelvic appendage musculature +intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage +relationship: BFO:0000050 UBERON:0007270 ! part of pelvic appendage musculature [Term] id: UBERON:0014891 @@ -33206,8 +33205,8 @@ synonym: "brainstem tracts" RELATED [] synonym: "brainstem tracts and commissures" RELATED [] is_a: UBERON:0003544 ! brain white matter intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0002298 ! brainstem -relationship: BFO:0000050 UBERON:0002298 ! brainstem +intersection_of: BFO:0000050 UBERON:0002298 ! part of brainstem +relationship: BFO:0000050 UBERON:0002298 ! part of brainstem [Term] id: UBERON:0014892 @@ -33215,16 +33214,16 @@ name: skeletal muscle organ def: "A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles)." [] synonym: "skeletal muscle" BROAD [] is_a: UBERON:0001630 ! muscle organ -relationship: BFO:0000050 UBERON:0018254 ! skeletal musculature -relationship: BFO:0000051 UBERON:0001134 ! skeletal muscle tissue -relationship: RO:0002202 UBERON:0003082 ! myotome +relationship: BFO:0000050 UBERON:0018254 ! part of skeletal musculature +relationship: BFO:0000051 UBERON:0001134 ! has part skeletal muscle tissue +relationship: RO:0002202 UBERON:0003082 ! develops_from myotome [Term] id: UBERON:0014903 name: primordial vasculature def: "A portion of tissue that will develop into vasculature." [] is_a: UBERON:0001048 ! primordium -relationship: BFO:0000050 UBERON:0011695 ! embryonic cardiovascular system +relationship: BFO:0000050 UBERON:0011695 ! part of embryonic cardiovascular system [Term] id: UBERON:0014907 @@ -33236,7 +33235,7 @@ synonym: "intersomitic blood vessel" EXACT [] synonym: "intersomitic vessels" EXACT [] synonym: "segmental vessel" EXACT [] is_a: UBERON:0001981 ! blood vessel -relationship: RO:0002202 UBERON:0005805 ! dorsal aorta +relationship: RO:0002202 UBERON:0005805 ! develops_from dorsal aorta [Term] id: UBERON:0015021 @@ -33245,11 +33244,11 @@ def: "A forelimb bone or its cartilage or pre-cartilage precursor." [] synonym: "forelimb skeletal element" BROAD [] is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb union_of: UBERON:0008962 ! forelimb bone union_of: UBERON:0010883 ! forelimb cartilage element union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation -relationship: BFO:0000050 UBERON:0001440 ! forelimb skeleton +relationship: BFO:0000050 UBERON:0001440 ! part of forelimb skeleton [Term] id: UBERON:0015022 @@ -33258,11 +33257,11 @@ def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [] synonym: "hindlimb bone skeletal element" BROAD [] is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb union_of: UBERON:0003464 ! hindlimb bone union_of: UBERON:0010885 ! hindlimb cartilage element union_of: UBERON:0010886 ! hindlimb pre-cartilage condensation -relationship: BFO:0000050 UBERON:0001441 ! hindlimb skeleton +relationship: BFO:0000050 UBERON:0001441 ! part of hindlimb skeleton [Term] id: UBERON:0015023 @@ -33274,8 +33273,8 @@ is_a: UBERON:0015063 ! autopod endochondral element union_of: UBERON:0003221 ! phalanx union_of: UBERON:0010700 ! phalanx pre-cartilage condensation union_of: UBERON:0010701 ! phalanx cartilage element -relationship: BFO:0000050 UBERON:0002544 ! digit -relationship: BFO:0000050 UBERON:0012150 ! skeleton of digitopodium +relationship: BFO:0000050 UBERON:0002544 ! part of digit +relationship: BFO:0000050 UBERON:0012150 ! part of skeleton of digitopodium [Term] id: UBERON:0015024 @@ -33286,13 +33285,13 @@ synonym: "manual digit phalanx skeletal element" BROAD [] is_a: UBERON:0015021 ! forelimb endochondral element is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0015023 ! phalanx endochondral element -intersection_of: BFO:0000050 UBERON:0002389 ! manual digit +intersection_of: BFO:0000050 UBERON:0002389 ! part of manual digit union_of: UBERON:0001436 ! phalanx of manus union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation union_of: UBERON:0010686 ! manual digit phalanx cartilage element -relationship: BFO:0000050 UBERON:0002389 ! manual digit -relationship: BFO:0000050 UBERON:0010688 ! skeleton of manual acropodium -relationship: BFO:0000050 UBERON:5102389 ! manual digit digitopodial skeleton +relationship: BFO:0000050 UBERON:0002389 ! part of manual digit +relationship: BFO:0000050 UBERON:0010688 ! part of skeleton of manual acropodium +relationship: BFO:0000050 UBERON:5102389 ! part of manual digit digitopodial skeleton [Term] id: UBERON:0015030 @@ -33303,13 +33302,13 @@ synonym: "pedal digit phalanx skeletal element" BROAD [] is_a: UBERON:0015022 ! hindlimb endochondral element is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0015023 ! phalanx endochondral element -intersection_of: BFO:0000050 UBERON:0001466 ! pedal digit +intersection_of: BFO:0000050 UBERON:0001466 ! part of pedal digit union_of: UBERON:0001449 ! phalanx of pes union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation union_of: UBERON:0010685 ! pedal digit phalanx cartilage element -relationship: BFO:0000050 UBERON:0001466 ! pedal digit -relationship: BFO:0000050 UBERON:0010696 ! skeleton of pedal acropodium -relationship: BFO:0000050 UBERON:5101466 ! pedal digit digitopodial skeleton +relationship: BFO:0000050 UBERON:0001466 ! part of pedal digit +relationship: BFO:0000050 UBERON:0010696 ! part of skeleton of pedal acropodium +relationship: BFO:0000050 UBERON:5101466 ! part of pedal digit digitopodial skeleton [Term] id: UBERON:0015052 @@ -33321,7 +33320,7 @@ is_a: UBERON:0015022 ! hindlimb endochondral element union_of: UBERON:0000981 ! femur union_of: UBERON:0006234 ! femur pre-cartilage condensation union_of: UBERON:0010129 ! femur cartilage element -relationship: BFO:0000050 UBERON:0000376 ! hindlimb stylopod +relationship: BFO:0000050 UBERON:0000376 ! part of hindlimb stylopod [Term] id: UBERON:0015053 @@ -33333,7 +33332,7 @@ is_a: UBERON:0015021 ! forelimb endochondral element union_of: UBERON:0000976 ! humerus union_of: UBERON:0006245 ! humerus cartilage element union_of: UBERON:0006246 ! humerus pre-cartilage condensation -relationship: BFO:0000050 UBERON:0003822 ! forelimb stylopod +relationship: BFO:0000050 UBERON:0003822 ! part of forelimb stylopod [Term] id: UBERON:0015061 @@ -33344,11 +33343,11 @@ synonym: "limb bone skeletal element" BROAD [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010363 ! endochondral element intersection_of: UBERON:0010363 ! endochondral element -intersection_of: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb union_of: UBERON:0002428 ! limb bone union_of: UBERON:0010881 ! limb cartilage element union_of: UBERON:0010882 ! limb bone pre-cartilage condensation -relationship: BFO:0000050 UBERON:0004381 ! skeleton of limb +relationship: BFO:0000050 UBERON:0004381 ! part of skeleton of limb [Term] id: UBERON:0015063 @@ -33356,8 +33355,8 @@ name: autopod endochondral element def: "A endochondral element that is part of a autopod region." [] is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element -intersection_of: BFO:0000050 UBERON:0002470 ! autopod region -relationship: BFO:0000050 UBERON:0006717 ! autopodial skeleton +intersection_of: BFO:0000050 UBERON:0002470 ! part of autopod region +relationship: BFO:0000050 UBERON:0006717 ! part of autopodial skeleton [Term] id: UBERON:0015064 @@ -33375,8 +33374,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0011822 ! dense irregular connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0015144 @@ -33387,8 +33386,8 @@ synonym: "hand/foot hair" EXACT [] synonym: "paw hair" NARROW [] is_a: UBERON:0001037 ! strand of hair intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0002470 ! autopod region -relationship: BFO:0000050 UBERON:0002470 ! autopod region +intersection_of: BFO:0000050 UBERON:0002470 ! part of autopod region +relationship: BFO:0000050 UBERON:0002470 ! part of autopod region [Term] id: UBERON:0015145 @@ -33400,8 +33399,8 @@ synonym: "hind foot hair" EXACT [] synonym: "hind paw hair" NARROW [] is_a: UBERON:0015144 ! autopod hair intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes [Term] id: UBERON:0015146 @@ -33412,8 +33411,8 @@ synonym: "hair of hand" EXACT [] synonym: "hand hair" EXACT [] is_a: UBERON:0015144 ! autopod hair intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0002398 ! manus -relationship: BFO:0000050 UBERON:0002398 ! manus +intersection_of: BFO:0000050 UBERON:0002398 ! part of manus +relationship: BFO:0000050 UBERON:0002398 ! part of manus [Term] id: UBERON:0015147 @@ -33422,8 +33421,8 @@ def: "A strand of hair that is part of a pinna." [] synonym: "ear hair" RELATED [] is_a: UBERON:0022279 ! strand of hair on external ear intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0001757 ! pinna -relationship: BFO:0000050 UBERON:0001757 ! pinna +intersection_of: BFO:0000050 UBERON:0001757 ! part of pinna +relationship: BFO:0000050 UBERON:0001757 ! part of pinna [Term] id: UBERON:0015150 @@ -33434,8 +33433,8 @@ synonym: "dorsal coat hair" RELATED [] synonym: "hair of back" RELATED [] is_a: UBERON:0001037 ! strand of hair intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0001137 ! dorsum -relationship: BFO:0000050 UBERON:0001137 ! dorsum +intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum +relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0015152 @@ -33445,8 +33444,8 @@ synonym: "ocular gland" EXACT [] synonym: "orbital gland" RELATED [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0004088 ! orbital region -relationship: BFO:0000050 UBERON:0035639 ! ocular adnexa +intersection_of: BFO:0000050 UBERON:0004088 ! part of orbital region +relationship: BFO:0000050 UBERON:0035639 ! part of ocular adnexa [Term] id: UBERON:0015154 @@ -33461,7 +33460,7 @@ id: UBERON:0015165 name: multi-unit eye def: "An eye consisting of multiple light-sensing organs" [] is_a: UBERON:0000970 ! eye -relationship: BFO:0000051 UBERON:0000020 ! sense organ +relationship: BFO:0000051 UBERON:0000020 ! has part sense organ [Term] id: UBERON:0015172 @@ -33471,8 +33470,8 @@ synonym: "blood vessel of endometrium" EXACT [] is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001295 ! endometrium -relationship: BFO:0000050 UBERON:0001295 ! endometrium +intersection_of: BFO:0000050 UBERON:0001295 ! part of endometrium +relationship: BFO:0000050 UBERON:0001295 ! part of endometrium [Term] id: UBERON:0015181 @@ -33489,15 +33488,15 @@ is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001560 ! neck of organ -intersection_of: BFO:0000050 UBERON:0001091 ! calcareous tooth -relationship: BFO:0000050 UBERON:0001091 ! calcareous tooth +intersection_of: BFO:0000050 UBERON:0001091 ! part of calcareous tooth +relationship: BFO:0000050 UBERON:0001091 ! part of calcareous tooth [Term] id: UBERON:0015212 name: lateral structure def: "Any structure that is placed on one side of the left-right axis of a bilaterian." [] is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000050 UBERON:0000465 ! material anatomical entity +relationship: BFO:0000050 UBERON:0000465 ! part of material anatomical entity [Term] id: UBERON:0015228 @@ -33509,14 +33508,14 @@ synonym: "circulatory vessel" NARROW [] synonym: "heart" BROAD [] synonym: "heart or heart like organ" EXACT [] is_a: UBERON:0003103 ! compound organ -relationship: BFO:0000050 UBERON:0001009 ! circulatory system +relationship: BFO:0000050 UBERON:0001009 ! part of circulatory system [Term] id: UBERON:0015238 name: pineal complex def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0001899 ! epithalamus +relationship: BFO:0000050 UBERON:0001899 ! part of epithalamus [Term] id: UBERON:0015249 @@ -33524,8 +33523,8 @@ name: digit skin def: "A zone of skin that is part of a digit [Automatically generated definition]." [] is_a: UBERON:0015790 ! autopod skin intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002544 ! digit -relationship: BFO:0000050 UBERON:0002544 ! digit +intersection_of: BFO:0000050 UBERON:0002544 ! part of digit +relationship: BFO:0000050 UBERON:0002544 ! part of digit [Term] id: UBERON:0015329 @@ -33533,15 +33532,15 @@ name: respiratory system basement membrane def: "A basement membrane of epithelium that is part of a respiratory system." [] is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0003570 ! respiratory system connective tissue +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0003570 ! part of respiratory system connective tissue [Term] id: UBERON:0015410 name: heart plus pericardium synonym: "heart/pericardium" EXACT [] is_a: UBERON:0005178 ! thoracic cavity element -relationship: BFO:0000050 UBERON:0004535 ! cardiovascular system +relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0015418 @@ -33550,8 +33549,8 @@ def: "A mesenchyme that is part of a urethra." [] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0000057 ! urethra -relationship: BFO:0000050 UBERON:0000057 ! urethra +intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra +relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0015453 @@ -33560,8 +33559,8 @@ def: "A lymph node that is part of a hypodermis." [] is_a: UBERON:0000029 ! lymph node is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0002072 ! hypodermis -relationship: BFO:0000050 UBERON:0002072 ! hypodermis +intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis +relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0015716 @@ -33572,8 +33571,8 @@ synonym: "epithelium of anal canal" EXACT [] is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0014703 ! anal membrane ectodermal component intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000159 ! anal canal -relationship: BFO:0000050 UBERON:0000159 ! anal canal +intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal +relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0015757 @@ -33592,8 +33591,8 @@ is_a: UBERON:0004809 ! salivary gland epithelium is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001837 ! duct of salivary gland -relationship: BFO:0000050 UBERON:0001837 ! duct of salivary gland +intersection_of: BFO:0000050 UBERON:0001837 ! part of duct of salivary gland +relationship: BFO:0000050 UBERON:0001837 ! part of duct of salivary gland [Term] id: UBERON:0015783 @@ -33603,8 +33602,8 @@ synonym: "muscle layer in fatty layer of subcutaneous tissue" EXACT [] synonym: "stratum musculosum panniculi adiposi telae subcutaneae" EXACT [] is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0002072 ! hypodermis -relationship: BFO:0000050 UBERON:0002072 ! hypodermis +intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis +relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0015786 @@ -33614,9 +33613,9 @@ synonym: "pars respiratoria tunicae mucosae nasi" EXACT [] synonym: "respiratory zone of nasal mucosa" EXACT [] is_a: UBERON:0001826 ! nasal cavity mucosa intersection_of: UBERON:0001826 ! nasal cavity mucosa -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -intersection_of: BFO:0000051 UBERON:0005385 ! nasal cavity respiratory epithelium -relationship: BFO:0000051 UBERON:0005385 ! nasal cavity respiratory epithelium +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +intersection_of: BFO:0000051 UBERON:0005385 ! has part nasal cavity respiratory epithelium +relationship: BFO:0000051 UBERON:0005385 ! has part nasal cavity respiratory epithelium [Term] id: UBERON:0015787 @@ -33626,8 +33625,8 @@ synonym: "respiratory conduit" RELATED [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit -intersection_of: BFO:0000050 UBERON:0001557 ! upper respiratory tract -relationship: BFO:0000050 UBERON:0001557 ! upper respiratory tract +intersection_of: BFO:0000050 UBERON:0001557 ! part of upper respiratory tract +relationship: BFO:0000050 UBERON:0001557 ! part of upper respiratory tract [Term] id: UBERON:0015788 @@ -33635,7 +33634,7 @@ name: olfactory apparatus chamber def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015787 ! upper respiratory conduit -relationship: BFO:0000050 UBERON:0000004 ! nose +relationship: BFO:0000050 UBERON:0000004 ! part of nose [Term] id: UBERON:0015789 @@ -33645,7 +33644,7 @@ synonym: "cranial/facial muscle" EXACT [] synonym: "cranio-facial muscle" RELATED [] synonym: "craniofacial muscle" RELATED [] is_a: UBERON:0002376 ! cranial muscle -relationship: BFO:0000050 UBERON:0004473 ! musculature of face +relationship: BFO:0000050 UBERON:0004473 ! part of musculature of face [Term] id: UBERON:0015790 @@ -33654,8 +33653,8 @@ def: "A zone of skin that is part of a autopod region." [] synonym: "paw skin" RELATED [] is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0002470 ! autopod region -relationship: BFO:0000050 UBERON:0002470 ! autopod region +intersection_of: BFO:0000050 UBERON:0002470 ! part of autopod region +relationship: BFO:0000050 UBERON:0002470 ! part of autopod region [Term] id: UBERON:0015791 @@ -33663,9 +33662,9 @@ name: digit connective tissue def: "A portion of connective tissue that is part of a digit." [] is_a: UBERON:0003587 ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue -intersection_of: BFO:0000050 UBERON:0002544 ! digit -relationship: BFO:0000050 UBERON:0002544 ! digit -relationship: RO:0002202 UBERON:0010702 ! digit mesenchyme +intersection_of: BFO:0000050 UBERON:0002544 ! part of digit +relationship: BFO:0000050 UBERON:0002544 ! part of digit +relationship: RO:0002202 UBERON:0010702 ! develops_from digit mesenchyme [Term] id: UBERON:0015796 @@ -33675,8 +33674,8 @@ synonym: "hepatic blood vessel" RELATED [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0002107 ! liver +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0015807 @@ -33684,8 +33683,8 @@ name: ear epithelium def: "A epithelium that is part of a ear." [] is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001690 ! ear -relationship: BFO:0000050 UBERON:0001690 ! ear +intersection_of: BFO:0000050 UBERON:0001690 ! part of ear +relationship: BFO:0000050 UBERON:0001690 ! part of ear [Term] id: UBERON:0015808 @@ -33694,8 +33693,8 @@ def: "A epithelium that is part of a camera-type eye." [] is_a: UBERON:0007625 ! pigment epithelium of eye is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000019 ! camera-type eye -relationship: BFO:0000050 UBERON:0000019 ! camera-type eye +intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye +relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0015813 @@ -33703,8 +33702,8 @@ name: middle ear epithelium def: "A epithelium that is part of a middle ear." [] is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001756 ! middle ear -relationship: BFO:0000050 UBERON:0001756 ! middle ear +intersection_of: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear [Term] id: UBERON:0015814 @@ -33712,8 +33711,8 @@ name: outer ear epithelium def: "A epithelium that is part of a external ear." [] is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001691 ! external ear -relationship: BFO:0000050 UBERON:0001691 ! external ear +intersection_of: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: BFO:0000050 UBERON:0001691 ! part of external ear [Term] id: UBERON:0015833 @@ -33721,8 +33720,8 @@ name: foregut epithelium def: "A epithelium that is part of a foregut." [] is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001041 ! foregut -relationship: BFO:0000050 UBERON:0001041 ! foregut +intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut +relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0015834 @@ -33733,8 +33732,8 @@ synonym: "lamina propria mucosae of duodenum" EXACT [] synonym: "lamina propria of duodenum" EXACT [] is_a: UBERON:0001238 ! lamina propria of small intestine intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0008342 ! intestinal villus of duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0008342 ! part of intestinal villus of duodenum [Term] id: UBERON:0015860 @@ -33747,8 +33746,8 @@ name: lymph node of head def: "A lymph node that is part of a head." [] is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0015871 @@ -33757,8 +33756,8 @@ def: "Any of the lymph nodes that are part of a face." [] synonym: "buccal lymph node" EXACT [] is_a: UBERON:0015870 ! lymph node of head intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0001456 ! face +intersection_of: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:0016398 @@ -33766,8 +33765,8 @@ name: lymph node of lower limb def: "A lymph node that is part of a hindlimb." [] is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0002103 ! hindlimb -relationship: BFO:0000050 UBERON:0002103 ! hindlimb +intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb +relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0016399 @@ -33775,8 +33774,8 @@ name: lymph node of upper limb def: "A lymph node that is part of a forelimb." [] is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0016405 @@ -33786,7 +33785,7 @@ synonym: "capillary of lung" EXACT [] is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0003526 ! respiratory system capillary intersection_of: UBERON:0001982 ! capillary -intersection_of: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0016410 @@ -33795,8 +33794,8 @@ def: "A breast that is part of a male organism." [] synonym: "mamma masculina" EXACT [] is_a: UBERON:0000310 ! breast intersection_of: UBERON:0000310 ! breast -intersection_of: BFO:0000050 UBERON:0003101 ! male organism -relationship: BFO:0000050 UBERON:0003101 ! male organism +intersection_of: BFO:0000050 UBERON:0003101 ! part of male organism +relationship: BFO:0000050 UBERON:0003101 ! part of male organism [Term] id: UBERON:0016435 @@ -33804,8 +33803,8 @@ name: chest wall def: "Subdivision of thorax which includes all structures from the skin to the costal pleura. Examples: There is only one chest wall." [] is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0001443 ! chest -relationship: BFO:0000050 UBERON:0001443 ! chest +intersection_of: BFO:0000050 UBERON:0001443 ! part of chest +relationship: BFO:0000050 UBERON:0001443 ! part of chest [Term] id: UBERON:0016446 @@ -33815,8 +33814,8 @@ synonym: "hair of scalp" EXACT [] synonym: "head hair" EXACT [] is_a: UBERON:0001037 ! strand of hair intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0016447 @@ -33825,8 +33824,8 @@ def: "A strand of hair that is part of a trunk." [] synonym: "trunk hair" EXACT [] is_a: UBERON:0001037 ! strand of hair intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0016478 @@ -33837,8 +33836,8 @@ synonym: "stroma of liver" EXACT [] is_a: UBERON:0003891 ! stroma is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0002107 ! liver -relationship: BFO:0000050 UBERON:0002107 ! liver +intersection_of: BFO:0000050 UBERON:0002107 ! part of liver +relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0016481 @@ -33847,15 +33846,15 @@ def: "A lymph node that is part of a bronchus." [] is_a: UBERON:0000029 ! lymph node is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0002185 ! bronchus -relationship: BFO:0000050 UBERON:0002185 ! bronchus +intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus +relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0016490 name: auditory system def: "is the sensory system for the sense of hearing." [] is_a: UBERON:0007037 ! mechanosensory system -relationship: BFO:0000050 UBERON:0002105 ! vestibulo-auditory system +relationship: BFO:0000050 UBERON:0002105 ! part of vestibulo-auditory system [Term] id: UBERON:0016510 @@ -33865,8 +33864,8 @@ synonym: "male urethral epithelium" EXACT [] synonym: "urethral epithelium of male" EXACT [] is_a: UBERON:0002325 ! epithelium of urethra intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001333 ! male urethra -relationship: BFO:0000050 UBERON:0001333 ! male urethra +intersection_of: BFO:0000050 UBERON:0001333 ! part of male urethra +relationship: BFO:0000050 UBERON:0001333 ! part of male urethra [Term] id: UBERON:0016511 @@ -33875,8 +33874,8 @@ def: "A lamina propria that is part of a mucosa of fundus of stomach." [] synonym: "lamina propria mucosae of fundus of stomach" EXACT [] is_a: UBERON:0004780 ! gastrointestinal system lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: BFO:0000050 UBERON:0004994 ! mucosa of fundus of stomach -relationship: BFO:0000050 UBERON:0004994 ! mucosa of fundus of stomach +intersection_of: BFO:0000050 UBERON:0004994 ! part of mucosa of fundus of stomach +relationship: BFO:0000050 UBERON:0004994 ! part of mucosa of fundus of stomach [Term] id: UBERON:0016512 @@ -33886,8 +33885,8 @@ synonym: "doudenal lumen" EXACT [] synonym: "duodenal lumen" EXACT [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space -intersection_of: BFO:0000050 UBERON:0002114 ! duodenum -relationship: BFO:0000050 UBERON:0002114 ! duodenum +intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum +relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0016517 @@ -33897,8 +33896,8 @@ synonym: "jejunal lumen" EXACT [] synonym: "jejunum lumen" EXACT [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space -intersection_of: BFO:0000050 UBERON:0002115 ! jejunum -relationship: BFO:0000050 UBERON:0002115 ! jejunum +intersection_of: BFO:0000050 UBERON:0002115 ! part of jejunum +relationship: BFO:0000050 UBERON:0002115 ! part of jejunum [Term] id: UBERON:0016520 @@ -33908,8 +33907,8 @@ synonym: "female urethral epithelium" EXACT [] synonym: "urethral epithelium of female" EXACT [] is_a: UBERON:0002325 ! epithelium of urethra intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001334 ! female urethra -relationship: BFO:0000050 UBERON:0001334 ! female urethra +intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra +relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0016525 @@ -33938,15 +33937,15 @@ synonym: "segment of cerebral cortex" RELATED [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0001869 ! cerebral hemisphere +relationship: BFO:0000050 UBERON:0001869 ! part of cerebral hemisphere [Term] id: UBERON:0016527 name: white matter of cerebral lobe is_a: UBERON:0002437 ! cerebral hemisphere white matter intersection_of: UBERON:0002437 ! cerebral hemisphere white matter -intersection_of: BFO:0000050 UBERON:0016526 ! lobe of cerebral hemisphere -relationship: BFO:0000050 UBERON:0016526 ! lobe of cerebral hemisphere +intersection_of: BFO:0000050 UBERON:0016526 ! part of lobe of cerebral hemisphere +relationship: BFO:0000050 UBERON:0016526 ! part of lobe of cerebral hemisphere [Term] id: UBERON:0016528 @@ -33955,8 +33954,8 @@ def: "A white matter of cerebral lobe that is part of a frontal lobe." [] synonym: "frontal lobe white matter" EXACT [] is_a: UBERON:0016527 ! white matter of cerebral lobe intersection_of: UBERON:0016527 ! white matter of cerebral lobe -intersection_of: BFO:0000050 UBERON:0016525 ! frontal lobe -relationship: BFO:0000050 UBERON:0016525 ! frontal lobe +intersection_of: BFO:0000050 UBERON:0016525 ! part of frontal lobe +relationship: BFO:0000050 UBERON:0016525 ! part of frontal lobe [Term] id: UBERON:0016529 @@ -33968,10 +33967,10 @@ synonym: "gray matter of lobe of cerebral hemisphere" RELATED [] synonym: "neocortical part of cerebral hemisphere" RELATED [] is_a: UBERON:0005401 ! cerebral hemisphere gray matter intersection_of: UBERON:0005401 ! cerebral hemisphere gray matter -intersection_of: BFO:0000050 UBERON:0001950 ! neocortex -intersection_of: BFO:0000050 UBERON:0016526 ! lobe of cerebral hemisphere -relationship: BFO:0000050 UBERON:0001950 ! neocortex -relationship: BFO:0000050 UBERON:0016526 ! lobe of cerebral hemisphere +intersection_of: BFO:0000050 UBERON:0001950 ! part of neocortex +intersection_of: BFO:0000050 UBERON:0016526 ! part of lobe of cerebral hemisphere +relationship: BFO:0000050 UBERON:0001950 ! part of neocortex +relationship: BFO:0000050 UBERON:0016526 ! part of lobe of cerebral hemisphere [Term] id: UBERON:0016536 @@ -33979,8 +33978,8 @@ name: white matter of limbic lobe def: "A white matter of cerebral lobe that is part of a limbic lobe." [] is_a: UBERON:0016527 ! white matter of cerebral lobe intersection_of: UBERON:0016527 ! white matter of cerebral lobe -intersection_of: BFO:0000050 UBERON:0002600 ! limbic lobe -relationship: BFO:0000050 UBERON:0002600 ! limbic lobe +intersection_of: BFO:0000050 UBERON:0002600 ! part of limbic lobe +relationship: BFO:0000050 UBERON:0002600 ! part of limbic lobe [Term] id: UBERON:0016542 @@ -33990,8 +33989,8 @@ synonym: "gray matter of limbic lobe" RELATED [] synonym: "limbic lobe cortex" EXACT [] is_a: UBERON:0016529 ! cortex of cerebral lobe intersection_of: UBERON:0016529 ! cortex of cerebral lobe -intersection_of: BFO:0000050 UBERON:0002600 ! limbic lobe -relationship: BFO:0000050 UBERON:0002600 ! limbic lobe +intersection_of: BFO:0000050 UBERON:0002600 ! part of limbic lobe +relationship: BFO:0000050 UBERON:0002600 ! part of limbic lobe [Term] id: UBERON:0016545 @@ -34001,9 +34000,9 @@ is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000490 ! unilaminar epithelium -intersection_of: BFO:0000050 UBERON:0000076 ! external ectoderm -intersection_of: BFO:0000050 UBERON:0001042 ! chordate pharynx -relationship: BFO:0000050 UBERON:0000076 ! external ectoderm +intersection_of: BFO:0000050 UBERON:0000076 ! part of external ectoderm +intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx +relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm [Term] id: UBERON:0016548 @@ -34015,13 +34014,13 @@ synonym: "gray matter layer of neuraxis" EXACT [] synonym: "grey matter layer" BROAD [] synonym: "grey matter layer of neuraxis" EXACT [] is_a: UBERON:0022303 ! nervous system cell part layer -relationship: BFO:0000051 UBERON:0002020 ! gray matter +relationship: BFO:0000051 UBERON:0002020 ! has part gray matter [Term] id: UBERON:0016550 name: spinal cord column is_a: UBERON:0011215 ! central nervous system cell part cluster -relationship: BFO:0000050 UBERON:0002240 ! spinal cord +relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0016554 @@ -34030,8 +34029,8 @@ def: "A white matter that is part of the midbrain." [] synonym: "mesencephalic white matter" EXACT [] is_a: UBERON:0003544 ! brain white matter intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001891 ! midbrain -relationship: BFO:0000050 UBERON:0001891 ! midbrain +intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain +relationship: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0016565 @@ -34040,8 +34039,8 @@ def: "A blood vessel that is part of a cerebellum." [] is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0002037 ! cerebellum -relationship: BFO:0000050 UBERON:0002037 ! cerebellum +intersection_of: BFO:0000050 UBERON:0002037 ! part of cerebellum +relationship: BFO:0000050 UBERON:0002037 ! part of cerebellum [Term] id: UBERON:0016566 @@ -34056,8 +34055,8 @@ synonym: "rexed lamina" EXACT [] is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer -intersection_of: BFO:0000050 UBERON:0002315 ! gray matter of spinal cord -relationship: BFO:0000050 UBERON:0002315 ! gray matter of spinal cord +intersection_of: BFO:0000050 UBERON:0002315 ! part of gray matter of spinal cord +relationship: BFO:0000050 UBERON:0002315 ! part of gray matter of spinal cord [Term] id: UBERON:0016611 @@ -34065,10 +34064,10 @@ name: auditory hillocks, pharyngeal arch 1 derived def: "A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix." [] is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster -intersection_of: BFO:0000050 UBERON:0006208 ! auditory hillocks -intersection_of: RO:0002202 UBERON:0004362 ! pharyngeal arch 1 -relationship: BFO:0000050 UBERON:0006208 ! auditory hillocks -relationship: RO:0002202 UBERON:0004362 ! pharyngeal arch 1 +intersection_of: BFO:0000050 UBERON:0006208 ! part of auditory hillocks +intersection_of: RO:0002202 UBERON:0004362 ! develops_from pharyngeal arch 1 +relationship: BFO:0000050 UBERON:0006208 ! part of auditory hillocks +relationship: RO:0002202 UBERON:0004362 ! develops_from pharyngeal arch 1 [Term] id: UBERON:0016612 @@ -34076,10 +34075,10 @@ name: auditory hillocks, pharyngeal arch 2 derived def: "A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus." [] is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster -intersection_of: BFO:0000050 UBERON:0006208 ! auditory hillocks -intersection_of: RO:0002202 UBERON:0003066 ! pharyngeal arch 2 -relationship: BFO:0000050 UBERON:0006208 ! auditory hillocks -relationship: RO:0002202 UBERON:0003066 ! pharyngeal arch 2 +intersection_of: BFO:0000050 UBERON:0006208 ! part of auditory hillocks +intersection_of: RO:0002202 UBERON:0003066 ! develops_from pharyngeal arch 2 +relationship: BFO:0000050 UBERON:0006208 ! part of auditory hillocks +relationship: RO:0002202 UBERON:0003066 ! develops_from pharyngeal arch 2 [Term] id: UBERON:0016879 @@ -34088,8 +34087,8 @@ def: "Primordium that develops into the central nervous system" [] synonym: "future CNS" EXACT [] synonym: "presumptive central nervous system" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0016880 ! future nervous system -relationship: RO:0002202 UBERON:0000924 ! ectoderm +relationship: BFO:0000050 UBERON:0016880 ! part of future nervous system +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0016880 @@ -34105,9 +34104,9 @@ def: "The joint that is formed by the union of the humerus, the scapula (or shou synonym: "joint of shoulder region" EXACT [] is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint -intersection_of: BFO:0000050 UBERON:0001467 ! shoulder -relationship: BFO:0000050 UBERON:0001467 ! shoulder -relationship: RO:0002202 UBERON:0006292 ! shoulder joint primordium +intersection_of: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: BFO:0000050 UBERON:0001467 ! part of shoulder +relationship: RO:0002202 UBERON:0006292 ! develops_from shoulder joint primordium [Term] id: UBERON:0016885 @@ -34116,8 +34115,8 @@ def: "Epithelium lining the distalmost portion of the digestive tract." [] synonym: "rectum epithelium" NARROW [] is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0006866 ! terminal part of digestive tract -relationship: BFO:0000050 UBERON:0006866 ! terminal part of digestive tract +intersection_of: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract +relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract [Term] id: UBERON:0016886 @@ -34127,8 +34126,8 @@ synonym: "rectum muscle" NARROW [] synonym: "rectum muscle structure" NARROW [] is_a: UBERON:0002385 ! muscle tissue intersection_of: UBERON:0002385 ! muscle tissue -intersection_of: BFO:0000050 UBERON:0006866 ! terminal part of digestive tract -relationship: BFO:0000050 UBERON:0006866 ! terminal part of digestive tract +intersection_of: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract +relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract [Term] id: UBERON:0016887 @@ -34137,7 +34136,7 @@ def: "The part of the conceptus that may be lost before birth or will be discard synonym: "extra-embryonic component" EXACT [] synonym: "extraembryonic component" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure -relationship: BFO:0000050 UBERON:0004716 ! conceptus +relationship: BFO:0000050 UBERON:0004716 ! part of conceptus [Term] id: UBERON:0016888 @@ -34152,15 +34151,15 @@ def: "A periosteum that is part of a long bone." [] synonym: "long bone periosteum" EXACT [] is_a: UBERON:0002515 ! periosteum intersection_of: UBERON:0002515 ! periosteum -intersection_of: BFO:0000050 UBERON:0002495 ! long bone -relationship: BFO:0000050 UBERON:0002495 ! long bone +intersection_of: BFO:0000050 UBERON:0002495 ! part of long bone +relationship: BFO:0000050 UBERON:0002495 ! part of long bone [Term] id: UBERON:0017650 name: developing mesenchymal structure def: "A mesenchyme-derived anatomical entity undergoing a transtion to become another structure." [] is_a: UBERON:0005423 ! developing anatomical structure -relationship: BFO:0000051 UBERON:0003104 ! mesenchyme +relationship: BFO:0000051 UBERON:0003104 ! has part mesenchyme [Term] id: UBERON:0017672 @@ -34172,7 +34171,7 @@ synonym: "set of abdominal viscera" EXACT [] is_a: UBERON:0002075 ! viscus is_a: UBERON:0005172 ! abdomen element intersection_of: UBERON:0002075 ! viscus -intersection_of: BFO:0000050 UBERON:0000916 ! abdomen +intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0018111 @@ -34185,8 +34184,8 @@ synonym: "tunica muscularis (rectum)" EXACT [] synonym: "tunica muscularis recti" EXACT [] is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001052 ! rectum -relationship: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum +relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0018112 @@ -34199,8 +34198,8 @@ is_a: UBERON:0004220 ! large intestine smooth muscle is_a: UBERON:0004231 ! anal region smooth muscle is_a: UBERON:0016886 ! muscle tissue of terminal part of digestive tract intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: BFO:0000050 UBERON:0001052 ! rectum -relationship: BFO:0000050 UBERON:0001052 ! rectum +intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum +relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0018154 @@ -34208,8 +34207,8 @@ name: ligament of middle ear def: "A ligament that is part of a middle ear." [] is_a: UBERON:0000211 ! ligament intersection_of: UBERON:0000211 ! ligament -intersection_of: BFO:0000050 UBERON:0001756 ! middle ear -relationship: BFO:0000050 UBERON:0001756 ! middle ear +intersection_of: BFO:0000050 UBERON:0001756 ! part of middle ear +relationship: BFO:0000050 UBERON:0001756 ! part of middle ear [Term] id: UBERON:0018226 @@ -34220,11 +34219,11 @@ synonym: "pulmonary lymphatic vasculature" RELATED [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision -intersection_of: BFO:0000050 UBERON:0002048 ! lung -intersection_of: BFO:0000050 UBERON:0006558 ! lymphatic part of lymphoid system -relationship: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0006558 ! lymphatic part of lymphoid system -relationship: BFO:0000051 UBERON:0018227 ! pulmonary lymphatic vessel +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +intersection_of: BFO:0000050 UBERON:0006558 ! part of lymphatic part of lymphoid system +relationship: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0006558 ! part of lymphatic part of lymphoid system +relationship: BFO:0000051 UBERON:0018227 ! has part pulmonary lymphatic vessel [Term] id: UBERON:0018227 @@ -34234,8 +34233,8 @@ synonym: "lymphatic vessel of lung" EXACT [] is_a: UBERON:0003456 ! respiratory system lymphatic vessel is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0018226 ! pulmonary part of lymphatic system +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0018226 ! part of pulmonary part of lymphatic system [Term] id: UBERON:0018234 @@ -34244,8 +34243,8 @@ def: "A stroma that is part of a pancreas." [] synonym: "pancreatic stroma" EXACT [] is_a: UBERON:0003891 ! stroma intersection_of: UBERON:0003891 ! stroma -intersection_of: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000050 UBERON:0001264 ! pancreas +intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0018235 @@ -34254,15 +34253,15 @@ def: "A capsule that divides the parenchyma of the pancreas into lobes and lobul synonym: "pancreatic capsule" EXACT [] is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule -intersection_of: BFO:0000050 UBERON:0001264 ! pancreas -relationship: BFO:0000050 UBERON:0001264 ! pancreas +intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas +relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0018254 name: skeletal musculature is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000050 UBERON:0000383 ! musculature of body -relationship: BFO:0000051 UBERON:0014892 ! skeletal muscle organ +relationship: BFO:0000050 UBERON:0000383 ! part of musculature of body +relationship: BFO:0000051 UBERON:0014892 ! has part skeletal muscle organ [Term] id: UBERON:0018257 @@ -34270,15 +34269,15 @@ name: submucosa of digestive tract def: "Any portion of submucosa that lines the digestive tract." [] is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0018260 name: layer of muscle tissue def: "Any organ component layer that consists of muscle tissue." [] is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000051 UBERON:0002385 ! muscle tissue +relationship: BFO:0000051 UBERON:0002385 ! has part muscle tissue [Term] id: UBERON:0018261 @@ -34290,8 +34289,8 @@ synonym: "tunica externa of digestive tract" RELATED [] synonym: "tunica muscularis of digestive tract" EXACT [] is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001555 ! digestive tract -relationship: BFO:0000050 UBERON:0001555 ! digestive tract +intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract +relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0018303 @@ -34302,8 +34301,8 @@ is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000479 ! tissue -intersection_of: BFO:0000050 UBERON:0002369 ! adrenal gland -relationship: BFO:0000050 UBERON:0002369 ! adrenal gland +intersection_of: BFO:0000050 UBERON:0002369 ! part of adrenal gland +relationship: BFO:0000050 UBERON:0002369 ! part of adrenal gland [Term] id: UBERON:0018649 @@ -34313,8 +34312,8 @@ synonym: "ventricular heart muscle" EXACT [] synonym: "ventricular muscle" RELATED [] is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium intersection_of: UBERON:0001133 ! cardiac muscle tissue -intersection_of: BFO:0000050 UBERON:0002082 ! cardiac ventricle -relationship: BFO:0000050 UBERON:0001083 ! myocardium of ventricle +intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle +relationship: BFO:0000050 UBERON:0001083 ! part of myocardium of ventricle [Term] id: UBERON:0018664 @@ -34325,7 +34324,7 @@ synonym: "neck of bone" EXACT [] is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005913 ! zone of bone organ intersection_of: UBERON:0001560 ! neck of organ -intersection_of: BFO:0000050 UBERON:0001474 ! bone element +intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0018674 @@ -34335,8 +34334,8 @@ synonym: "cardiac vasculature" EXACT [] is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature -intersection_of: BFO:0000050 UBERON:0000948 ! heart -relationship: BFO:0000050 UBERON:0000948 ! heart +intersection_of: BFO:0000050 UBERON:0000948 ! part of heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0018707 @@ -34353,7 +34352,7 @@ synonym: "genital mucosa" EXACT [] is_a: UBERON:0000344 ! mucosa is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000344 ! mucosa -intersection_of: BFO:0000050 UBERON:0000990 ! reproductive system +intersection_of: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0019143 @@ -34362,8 +34361,8 @@ def: "Adipose tissue which is located throughout skeletal muscle and is responsi synonym: "intramuscular fat" RELATED [] is_a: UBERON:0001013 ! adipose tissue intersection_of: UBERON:0001013 ! adipose tissue -intersection_of: BFO:0000050 UBERON:0014892 ! skeletal muscle organ -relationship: BFO:0000050 UBERON:0014892 ! skeletal muscle organ +intersection_of: BFO:0000050 UBERON:0014892 ! part of skeletal muscle organ +relationship: BFO:0000050 UBERON:0014892 ! part of skeletal muscle organ [Term] id: UBERON:0019189 @@ -34372,8 +34371,8 @@ synonym: "carotid endothelium" RELATED [] synonym: "carotid epithelium" RELATED [] is_a: UBERON:0001917 ! endothelium of artery intersection_of: UBERON:0001986 ! endothelium -intersection_of: BFO:0000050 UBERON:0005396 ! carotid artery segment -relationship: BFO:0000050 UBERON:0005396 ! carotid artery segment +intersection_of: BFO:0000050 UBERON:0005396 ! part of carotid artery segment +relationship: BFO:0000050 UBERON:0005396 ! part of carotid artery segment [Term] id: UBERON:0019190 @@ -34386,8 +34385,8 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0019204 @@ -34395,8 +34394,8 @@ name: skin epithelium def: "Any region of epithelium that is part of a skin region." [] is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000014 ! zone of skin -relationship: BFO:0000050 UBERON:0000014 ! zone of skin +intersection_of: BFO:0000050 UBERON:0000014 ! part of zone of skin +relationship: BFO:0000050 UBERON:0000014 ! part of zone of skin [Term] id: UBERON:0019207 @@ -34409,9 +34408,9 @@ synonym: "retinachoroidal region" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: BFO:0000050 UBERON:0010230 ! eyeball of camera-type eye -relationship: BFO:0000051 UBERON:0000966 ! retina -relationship: BFO:0000051 UBERON:0001776 ! optic choroid +relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye +relationship: BFO:0000051 UBERON:0000966 ! has part retina +relationship: BFO:0000051 UBERON:0001776 ! has part optic choroid [Term] id: UBERON:0019258 @@ -34419,8 +34418,8 @@ name: white matter of hindbrain def: "A white matter that is part of the hindbrain." [] is_a: UBERON:0003544 ! brain white matter intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0019261 @@ -34428,8 +34427,8 @@ name: white matter of forebrain def: "A white matter that is part of the forebrain." [] is_a: UBERON:0003544 ! brain white matter intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001890 ! forebrain -relationship: BFO:0000050 UBERON:0001890 ! forebrain +intersection_of: BFO:0000050 UBERON:0001890 ! part of forebrain +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain [Term] id: UBERON:0019262 @@ -34438,8 +34437,8 @@ def: "A white matter that is part of the myelencephalon." [] synonym: "myelencephalic white matter" EXACT [] is_a: UBERON:0019258 ! white matter of hindbrain intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0005290 ! myelencephalon -relationship: BFO:0000050 UBERON:0005290 ! myelencephalon +intersection_of: BFO:0000050 UBERON:0005290 ! part of myelencephalon +relationship: BFO:0000050 UBERON:0005290 ! part of myelencephalon [Term] id: UBERON:0019263 @@ -34447,48 +34446,48 @@ name: gray matter of hindbrain synonym: "gray matter of the hindbrain" EXACT [] is_a: UBERON:0003528 ! brain gray matter intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0002028 ! hindbrain -relationship: BFO:0000050 UBERON:0002028 ! hindbrain +intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain +relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0019264 name: gray matter of forebrain is_a: UBERON:0003528 ! brain gray matter intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0001890 ! forebrain -relationship: BFO:0000050 UBERON:0001890 ! forebrain +intersection_of: BFO:0000050 UBERON:0001890 ! part of forebrain +relationship: BFO:0000050 UBERON:0001890 ! part of forebrain [Term] id: UBERON:0019267 name: gray matter of midbrain is_a: UBERON:0003528 ! brain gray matter intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0001891 ! midbrain -relationship: BFO:0000050 UBERON:0001891 ! midbrain +intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain +relationship: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0019269 name: gray matter of diencephalon is_a: UBERON:0019264 ! gray matter of forebrain intersection_of: UBERON:0002020 ! gray matter -intersection_of: BFO:0000050 UBERON:0001894 ! diencephalon -relationship: BFO:0000050 UBERON:0001894 ! diencephalon +intersection_of: BFO:0000050 UBERON:0001894 ! part of diencephalon +relationship: BFO:0000050 UBERON:0001894 ! part of diencephalon [Term] id: UBERON:0019291 name: white matter of metencephalon is_a: UBERON:0019258 ! white matter of hindbrain intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0001895 ! metencephalon -relationship: BFO:0000050 UBERON:0001895 ! metencephalon +intersection_of: BFO:0000050 UBERON:0001895 ! part of metencephalon +relationship: BFO:0000050 UBERON:0001895 ! part of metencephalon [Term] id: UBERON:0019304 name: sensory organ epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000020 ! sense organ -relationship: BFO:0000050 UBERON:0000020 ! sense organ +intersection_of: BFO:0000050 UBERON:0000020 ! part of sense organ +relationship: BFO:0000050 UBERON:0000020 ! part of sense organ [Term] id: UBERON:0019306 @@ -34496,8 +34495,8 @@ name: nose epithelium is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000004 ! nose -relationship: BFO:0000050 UBERON:0000004 ! nose +intersection_of: BFO:0000050 UBERON:0000004 ! part of nose +relationship: BFO:0000050 UBERON:0000004 ! part of nose [Term] id: UBERON:0019319 @@ -34508,7 +34507,7 @@ synonym: "integumental system exocrine gland" EXACT [] is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003297 ! gland of integumental system intersection_of: UBERON:0002365 ! exocrine gland -intersection_of: BFO:0000050 UBERON:0002416 ! integumental system +intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0022248 @@ -34520,8 +34519,8 @@ synonym: "telencephalic fascicle" EXACT [] synonym: "telencephalic nerve fascicle" EXACT [] is_a: UBERON:0005838 ! fasciculus of brain intersection_of: UBERON:0001019 ! nerve fasciculus -intersection_of: BFO:0000050 UBERON:0001893 ! telencephalon -relationship: BFO:0000050 UBERON:0001893 ! telencephalon +intersection_of: BFO:0000050 UBERON:0001893 ! part of telencephalon +relationship: BFO:0000050 UBERON:0001893 ! part of telencephalon [Term] id: UBERON:0022279 @@ -34531,8 +34530,8 @@ synonym: "hair of tragus" EXACT [] synonym: "tragus hair" EXACT [] is_a: UBERON:0016446 ! hair of head intersection_of: UBERON:0001037 ! strand of hair -intersection_of: BFO:0000050 UBERON:0001691 ! external ear -relationship: BFO:0000050 UBERON:0001691 ! external ear +intersection_of: BFO:0000050 UBERON:0001691 ! part of external ear +relationship: BFO:0000050 UBERON:0001691 ! part of external ear [Term] id: UBERON:0022280 @@ -34542,8 +34541,8 @@ synonym: "wall of small intestinal crypt of Lieberkuhn" RELATED [] is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001241 ! crypt of Lieberkuhn of small intestine -relationship: BFO:0000050 UBERON:0001241 ! crypt of Lieberkuhn of small intestine +intersection_of: BFO:0000050 UBERON:0001241 ! part of crypt of Lieberkuhn of small intestine +relationship: BFO:0000050 UBERON:0001241 ! part of crypt of Lieberkuhn of small intestine [Term] id: UBERON:0022281 @@ -34551,8 +34550,8 @@ name: epithelium of crypt of Lieberkuhn of large intestine is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001984 ! crypt of Lieberkuhn of large intestine -relationship: BFO:0000050 UBERON:0001984 ! crypt of Lieberkuhn of large intestine +intersection_of: BFO:0000050 UBERON:0001984 ! part of crypt of Lieberkuhn of large intestine +relationship: BFO:0000050 UBERON:0001984 ! part of crypt of Lieberkuhn of large intestine [Term] id: UBERON:0022284 @@ -34560,7 +34559,7 @@ name: lacrimal gland bud def: "the single bud-like invagination of the conjunctival fornix epithelium at the temporal aspect of the eye that signals lacrimal gland formation (Int Rev Cytol. 1996;168:1-80. Cell biology of the harderian gland)" [] is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0015808 ! eye epithelium -relationship: BFO:0000050 UBERON:0001750 ! lacrimal apparatus +relationship: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus [Term] id: UBERON:0022292 @@ -34568,8 +34567,8 @@ name: splenic arteriole is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001980 ! arteriole -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: BFO:0000050 UBERON:0002106 ! spleen +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0022303 @@ -34578,7 +34577,7 @@ def: "Single layer of a laminar structure, identified by different density, arra synonym: "lamina" BROAD [] synonym: "layer" BROAD [] is_a: UBERON:0005162 ! multi cell part structure -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0022350 @@ -34587,7 +34586,7 @@ def: "Serous membrane layer that is adjacent to and lines an organ." [] synonym: "visceral wall of serous membrane" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0000042 ! serous membrane +relationship: BFO:0000050 UBERON:0000042 ! part of serous membrane [Term] id: UBERON:0022351 @@ -34597,7 +34596,7 @@ synonym: "cavity lining" BROAD [] synonym: "parietal wall of serous membrane" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer -relationship: BFO:0000050 UBERON:0000042 ! serous membrane +relationship: BFO:0000050 UBERON:0000042 ! part of serous membrane [Term] id: UBERON:0022357 @@ -34607,8 +34606,8 @@ synonym: "ileum mesentery" EXACT [] synonym: "mesoileum" EXACT [] is_a: UBERON:0001170 ! mesentery of small intestine intersection_of: UBERON:0002095 ! mesentery -intersection_of: BFO:0000050 UBERON:0002116 ! ileum -relationship: BFO:0000050 UBERON:0002116 ! ileum +intersection_of: BFO:0000050 UBERON:0002116 ! part of ileum +relationship: BFO:0000050 UBERON:0002116 ! part of ileum [Term] id: UBERON:0022358 @@ -34618,8 +34617,8 @@ synonym: "placental vessel" BROAD [] is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001987 ! placenta -relationship: BFO:0000050 UBERON:0001987 ! placenta +intersection_of: BFO:0000050 UBERON:0001987 ! part of placenta +relationship: BFO:0000050 UBERON:0001987 ! part of placenta [Term] id: UBERON:0022360 @@ -34627,8 +34626,8 @@ name: male mammary gland duct def: "A mammary gland duct that is part of a male organism. This structure typically regresses." [] is_a: UBERON:0001765 ! mammary duct intersection_of: UBERON:0001765 ! mammary duct -intersection_of: BFO:0000050 UBERON:0003101 ! male organism -relationship: BFO:0000050 UBERON:0003101 ! male organism +intersection_of: BFO:0000050 UBERON:0003101 ! part of male organism +relationship: BFO:0000050 UBERON:0003101 ! part of male organism [Term] id: UBERON:0024045 @@ -34637,8 +34636,8 @@ def: "White matter that lies deep to the granular cell layer of the cerebellar c synonym: "white matter of the cerebellar cortex" EXACT [] is_a: UBERON:0019291 ! white matter of metencephalon intersection_of: UBERON:0002316 ! white matter -intersection_of: BFO:0000050 UBERON:0002129 ! cerebellar cortex -relationship: BFO:0000050 UBERON:0002129 ! cerebellar cortex +intersection_of: BFO:0000050 UBERON:0002129 ! part of cerebellar cortex +relationship: BFO:0000050 UBERON:0002129 ! part of cerebellar cortex [Term] id: UBERON:0034705 @@ -34648,7 +34647,7 @@ synonym: "embryonic neuroepithelium" EXACT [] synonym: "neurepithelium" BROAD [] synonym: "neuroepithelium" EXACT [] is_a: UBERON:0000483 ! epithelium -relationship: BFO:0000050 UBERON:0001016 ! nervous system +relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0034706 @@ -34671,7 +34670,7 @@ synonym: "cranial nerve fiber tract" RELATED [] synonym: "cranial nerve or tract" RELATED [] synonym: "neuron projection bundle from brain" RELATED [] is_a: UBERON:0000122 ! neuron projection bundle -relationship: BFO:0000050 UBERON:0000033 ! head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0034728 @@ -34681,15 +34680,15 @@ synonym: "nervus visceralis" EXACT [] synonym: "visceral nerve" EXACT [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve -intersection_of: BFO:0000050 UBERON:0002410 ! autonomic nervous system -relationship: BFO:0000050 UBERON:0002410 ! autonomic nervous system +intersection_of: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system +relationship: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system [Term] id: UBERON:0034768 name: morphological feature def: "A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology." [] is_a: UBERON:0000061 ! anatomical structure -relationship: BFO:0000050 UBERON:0000468 ! multicellular organism +relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0034769 @@ -34701,8 +34700,8 @@ id: UBERON:0034875 name: future pituitary gland synonym: "pituitary primordium" EXACT [] is_a: UBERON:0006598 ! presumptive structure -relationship: BFO:0000050 UBERON:0000033 ! head -relationship: RO:0002202 UBERON:0000924 ! ectoderm +relationship: BFO:0000050 UBERON:0000033 ! part of head +relationship: RO:0002202 UBERON:0000924 ! develops_from ectoderm [Term] id: UBERON:0034878 @@ -34710,7 +34709,7 @@ name: prechordal mesoderm def: "the area of axial mesoderm that develops into the prechordal plate" [] synonym: "prechordal mesenchyme" EXACT [] is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0003068 ! axial mesoderm +relationship: BFO:0000050 UBERON:0003068 ! part of axial mesoderm [Term] id: UBERON:0034907 @@ -34718,8 +34717,8 @@ name: pineal parenchyma def: "Parenchymal tissue that forms the pineal gland." [] is_a: UBERON:0005158 ! parenchyma of central nervous system intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0001905 ! pineal body -relationship: BFO:0000050 UBERON:0001905 ! pineal body +intersection_of: BFO:0000050 UBERON:0001905 ! part of pineal body +relationship: BFO:0000050 UBERON:0001905 ! part of pineal body [Term] id: UBERON:0034921 @@ -34727,7 +34726,7 @@ name: multi organ part structure def: "An multicellular anatomical structure that has subparts of multiple organs as a part." [] synonym: "anatomical cluster" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000051 UBERON:0000064 ! organ part +relationship: BFO:0000051 UBERON:0000064 ! has part organ part [Term] id: UBERON:0034922 @@ -34740,14 +34739,14 @@ id: UBERON:0034923 name: disconnected anatomical group def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [] is_a: UBERON:0000465 ! material anatomical entity -relationship: BFO:0000051 UBERON:0000061 ! anatomical structure +relationship: BFO:0000051 UBERON:0000061 ! has part anatomical structure [Term] id: UBERON:0034925 name: anatomical collection def: "A collection of anatomical structures that are alike in terms of their morphology or developmental origin." [] is_a: UBERON:0000465 ! material anatomical entity -relationship: BFO:0000051 UBERON:0000061 ! anatomical structure +relationship: BFO:0000051 UBERON:0000061 ! has part anatomical structure [Term] id: UBERON:0034926 @@ -34760,11 +34759,11 @@ id: UBERON:0034929 name: external soft tissue zone def: "A region or zone on the surface of an organism that encompasses skin and any adnexa, down through muscles and bounded by underlying skeletal support structures." [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: BFO:0000050 UBERON:0000475 ! organism subdivision -relationship: BFO:0000051 UBERON:0000014 ! zone of skin -relationship: BFO:0000051 UBERON:0001015 ! musculature -relationship: BFO:0000051 UBERON:0001021 ! nerve -relationship: BFO:0000051 UBERON:0002049 ! vasculature +relationship: BFO:0000050 UBERON:0000475 ! part of organism subdivision +relationship: BFO:0000051 UBERON:0000014 ! has part zone of skin +relationship: BFO:0000051 UBERON:0001015 ! has part musculature +relationship: BFO:0000051 UBERON:0001021 ! has part nerve +relationship: BFO:0000051 UBERON:0002049 ! has part vasculature [Term] id: UBERON:0034932 @@ -34775,15 +34774,15 @@ synonym: "biliary system epithelium" EXACT [] synonym: "biliary tract epithelium" RELATED [] is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0002294 ! biliary system -relationship: BFO:0000050 UBERON:0002294 ! biliary system +intersection_of: BFO:0000050 UBERON:0002294 ! part of biliary system +relationship: BFO:0000050 UBERON:0002294 ! part of biliary system [Term] id: UBERON:0034933 name: layer of smooth muscle tissue def: "Any organ component layer that consists of smooth muscle tissue." [] is_a: UBERON:0018260 ! layer of muscle tissue -relationship: BFO:0000051 UBERON:0001135 ! smooth muscle tissue +relationship: BFO:0000051 UBERON:0001135 ! has part smooth muscle tissue [Term] id: UBERON:0034944 @@ -34801,7 +34800,7 @@ def: "A population of lymphatic endothelial cell precursors that will form the l synonym: "primary lymph sac" RELATED [] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 ! epithelial sac -relationship: BFO:0000050 UBERON:0006558 ! lymphatic part of lymphoid system +relationship: BFO:0000050 UBERON:0006558 ! part of lymphatic part of lymphoid system [Term] id: UBERON:0034969 @@ -34810,8 +34809,8 @@ synonym: "duct epithelium" RELATED [] synonym: "ductal epithelium" RELATED [] is_a: UBERON:0003914 ! epithelial tube intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0000058 ! duct -relationship: BFO:0000050 UBERON:0000058 ! duct +intersection_of: BFO:0000050 UBERON:0000058 ! part of duct +relationship: BFO:0000050 UBERON:0000058 ! part of duct [Term] id: UBERON:0034978 @@ -34827,8 +34826,8 @@ name: jaw mesenchyme def: "Mesenchyme that is part of a developing jaw [Automatically generated definition]." [] is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0011595 ! jaw region -relationship: BFO:0000050 UBERON:0011595 ! jaw region +intersection_of: BFO:0000050 UBERON:0011595 ! part of jaw region +relationship: BFO:0000050 UBERON:0011595 ! part of jaw region [Term] id: UBERON:0034996 @@ -34836,8 +34835,8 @@ name: outer renal medulla loop of Henle synonym: "loop of Henle, outer medullary portion" EXACT [] is_a: UBERON:0034997 ! renal medulla loop of Henle intersection_of: UBERON:0001288 ! loop of Henle -intersection_of: BFO:0000050 UBERON:0001293 ! outer medulla of kidney -relationship: BFO:0000050 UBERON:0001293 ! outer medulla of kidney +intersection_of: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney +relationship: BFO:0000050 UBERON:0001293 ! part of outer medulla of kidney [Term] id: UBERON:0034997 @@ -34846,14 +34845,14 @@ synonym: "loop of Henle of renal medulla" EXACT [] synonym: "loop of Henle, medullary portion" EXACT [] is_a: UBERON:0001288 ! loop of Henle intersection_of: UBERON:0001288 ! loop of Henle -intersection_of: BFO:0000050 UBERON:0000362 ! renal medulla -relationship: BFO:0000050 UBERON:0000362 ! renal medulla +intersection_of: BFO:0000050 UBERON:0000362 ! part of renal medulla +relationship: BFO:0000050 UBERON:0000362 ! part of renal medulla [Term] id: UBERON:0035004 name: preputial swelling is_a: UBERON:0002050 ! embryonic structure -relationship: BFO:0000050 UBERON:0005876 ! undifferentiated genital tubercle +relationship: BFO:0000050 UBERON:0005876 ! part of undifferentiated genital tubercle [Term] id: UBERON:0035005 @@ -34861,8 +34860,8 @@ name: preputial swelling of male synonym: "prepuce of male" RELATED [] is_a: UBERON:0035004 ! preputial swelling intersection_of: UBERON:0035004 ! preputial swelling -intersection_of: BFO:0000050 UBERON:0003101 ! male organism -relationship: BFO:0000050 UBERON:0006261 ! male genital tubercle +intersection_of: BFO:0000050 UBERON:0003101 ! part of male organism +relationship: BFO:0000050 UBERON:0006261 ! part of male genital tubercle [Term] id: UBERON:0035006 @@ -34870,8 +34869,8 @@ name: preputial swelling of female synonym: "prepuce of female" RELATED [] is_a: UBERON:0035004 ! preputial swelling intersection_of: UBERON:0035004 ! preputial swelling -intersection_of: BFO:0000050 UBERON:0003100 ! female organism -relationship: BFO:0000050 UBERON:0006233 ! female genital tubercle +intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism +relationship: BFO:0000050 UBERON:0006233 ! part of female genital tubercle [Term] id: UBERON:0035034 @@ -34879,16 +34878,16 @@ name: eyelid epithelium def: "An epithelium that is part of an eyelid [Automatically generated definition]." [] is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0001711 ! eyelid -relationship: BFO:0000050 UBERON:0001711 ! eyelid +intersection_of: BFO:0000050 UBERON:0001711 ! part of eyelid +relationship: BFO:0000050 UBERON:0001711 ! part of eyelid [Term] id: UBERON:0035037 name: jaw epithelium is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium -intersection_of: BFO:0000050 UBERON:0011595 ! jaw region -relationship: BFO:0000050 UBERON:0011595 ! jaw region +intersection_of: BFO:0000050 UBERON:0011595 ! part of jaw region +relationship: BFO:0000050 UBERON:0011595 ! part of jaw region [Term] id: UBERON:0035049 @@ -34897,7 +34896,7 @@ def: "Any of the interlobular excretory ducts of a salivary gland which are foun is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0035050 ! excretory duct intersection_of: UBERON:0035050 ! excretory duct -intersection_of: BFO:0000050 UBERON:0001044 ! saliva-secreting gland +intersection_of: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland [Term] id: UBERON:0035050 @@ -34910,7 +34909,7 @@ name: interlobular duct of salivary gland is_a: UBERON:0014716 ! interlobular duct is_a: UBERON:0035049 ! excretory duct of salivary gland intersection_of: UBERON:0014716 ! interlobular duct -intersection_of: BFO:0000050 UBERON:0001044 ! saliva-secreting gland +intersection_of: BFO:0000050 UBERON:0001044 ! part of saliva-secreting gland [Term] id: UBERON:0035073 @@ -34919,8 +34918,8 @@ synonym: "ductal part of eccrine sweat gland" EXACT [] is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct -intersection_of: BFO:0000050 UBERON:0000423 ! eccrine sweat gland -relationship: BFO:0000050 UBERON:0000423 ! eccrine sweat gland +intersection_of: BFO:0000050 UBERON:0000423 ! part of eccrine sweat gland +relationship: BFO:0000050 UBERON:0000423 ! part of eccrine sweat gland [Term] id: UBERON:0035075 @@ -34929,8 +34928,8 @@ synonym: "lobe or lobule of thymus" RELATED [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000063 ! organ subunit -intersection_of: BFO:0000050 UBERON:0002046 ! thyroid gland -relationship: BFO:0000050 UBERON:0002046 ! thyroid gland +intersection_of: BFO:0000050 UBERON:0002046 ! part of thyroid gland +relationship: BFO:0000050 UBERON:0002046 ! part of thyroid gland [Term] id: UBERON:0035128 @@ -34938,8 +34937,8 @@ name: manus cartilage element synonym: "hand cartilage condensation" EXACT [] is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0015064 ! autopod cartilage -relationship: BFO:0000050 UBERON:0002398 ! manus -relationship: RO:0002202 UBERON:0009523 ! mesenchyme of handplate +relationship: BFO:0000050 UBERON:0002398 ! part of manus +relationship: RO:0002202 UBERON:0009523 ! develops_from mesenchyme of handplate [Term] id: UBERON:0035129 @@ -34947,8 +34946,8 @@ name: pes cartilage element synonym: "foot cartilage condensation" EXACT [] is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015064 ! autopod cartilage -relationship: BFO:0000050 UBERON:0002387 ! pes -relationship: RO:0002202 UBERON:0003328 ! mesenchyme of footplate +relationship: BFO:0000050 UBERON:0002387 ! part of pes +relationship: RO:0002202 UBERON:0003328 ! develops_from mesenchyme of footplate [Term] id: UBERON:0035267 @@ -34959,8 +34958,8 @@ synonym: "gallbladder neck" EXACT [] is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001560 ! neck of organ -intersection_of: BFO:0000050 UBERON:0002110 ! gall bladder -relationship: BFO:0000050 UBERON:0002110 ! gall bladder +intersection_of: BFO:0000050 UBERON:0002110 ! part of gall bladder +relationship: BFO:0000050 UBERON:0002110 ! part of gall bladder [Term] id: UBERON:0035316 @@ -34972,8 +34971,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003893 ! capsule -intersection_of: BFO:0000050 UBERON:0002367 ! prostate gland -relationship: BFO:0000050 UBERON:0002367 ! prostate gland +intersection_of: BFO:0000050 UBERON:0002367 ! part of prostate gland +relationship: BFO:0000050 UBERON:0002367 ! part of prostate gland [Term] id: UBERON:0035553 @@ -34981,7 +34980,7 @@ name: left cardiac chamber def: "Any chamber of the left side of the heart" [] is_a: UBERON:0004151 ! cardiac chamber is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000948 ! heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0035554 @@ -34989,13 +34988,13 @@ name: right cardiac chamber def: "Any chamber of the right side of the heart" [] is_a: UBERON:0004151 ! cardiac chamber is_a: UBERON:0015212 ! lateral structure -relationship: BFO:0000050 UBERON:0000948 ! heart +relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0035555 name: lateral line sense organ is_a: UBERON:0010521 ! electroreceptor organ -relationship: BFO:0000050 UBERON:0002540 ! lateral line system +relationship: BFO:0000050 UBERON:0002540 ! part of lateral line system [Term] id: UBERON:0035606 @@ -35008,10 +35007,10 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ -intersection_of: BFO:0000050 UBERON:0001352 ! external acoustic meatus -intersection_of: BFO:0000050 UBERON:0001867 ! cartilage of external ear -relationship: BFO:0000050 UBERON:0001352 ! external acoustic meatus -relationship: BFO:0000050 UBERON:0001867 ! cartilage of external ear +intersection_of: BFO:0000050 UBERON:0001352 ! part of external acoustic meatus +intersection_of: BFO:0000050 UBERON:0001867 ! part of cartilage of external ear +relationship: BFO:0000050 UBERON:0001352 ! part of external acoustic meatus +relationship: BFO:0000050 UBERON:0001867 ! part of cartilage of external ear [Term] id: UBERON:0035639 @@ -35028,7 +35027,7 @@ synonym: "eye adnexa" RELATED [] synonym: "set of accessory visual structures" RELATED [] synonym: "structurae oculi accessoriae" RELATED [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0004088 ! orbital region +relationship: BFO:0000050 UBERON:0004088 ! part of orbital region [Term] id: UBERON:0035764 @@ -35037,16 +35036,16 @@ synonym: "intrapulmonary lymph node" EXACT [] synonym: "pulmonary node" EXACT [] is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node -intersection_of: BFO:0000050 UBERON:0008886 ! pulmonary vascular system -relationship: BFO:0000050 UBERON:0008886 ! pulmonary vascular system +intersection_of: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system +relationship: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system [Term] id: UBERON:0035767 name: intrapulmonary bronchus is_a: UBERON:0002185 ! bronchus intersection_of: UBERON:0002185 ! bronchus -intersection_of: BFO:0000050 UBERON:0002048 ! lung -relationship: BFO:0000050 UBERON:0002048 ! lung +intersection_of: BFO:0000050 UBERON:0002048 ! part of lung +relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0035804 @@ -35055,9 +35054,9 @@ def: "The primordial mouth region of the developing head." [] synonym: "primitive mouth" EXACT [] synonym: "primordial mouth" EXACT [] is_a: UBERON:0013522 ! subdivision of tube -relationship: BFO:0000050 UBERON:0007026 ! presumptive gut -relationship: BFO:0000051 UBERON:0000925 ! endoderm -relationship: BFO:0000051 UBERON:0000930 ! stomodeum +relationship: BFO:0000050 UBERON:0007026 ! part of presumptive gut +relationship: BFO:0000051 UBERON:0000925 ! has part endoderm +relationship: BFO:0000051 UBERON:0000930 ! has part stomodeum [Term] id: UBERON:0035805 @@ -35070,14 +35069,14 @@ synonym: "sigmoideum muscularis" RELATED [] synonym: "tunica muscularis colon sigmoideum" RELATED [] is_a: UBERON:0012489 ! muscle layer of colon intersection_of: UBERON:0006660 ! muscular coat -intersection_of: BFO:0000050 UBERON:0001159 ! sigmoid colon -relationship: BFO:0000050 UBERON:0001159 ! sigmoid colon +intersection_of: BFO:0000050 UBERON:0001159 ! part of sigmoid colon +relationship: BFO:0000050 UBERON:0001159 ! part of sigmoid colon [Term] id: UBERON:0035809 name: serous cavity is_a: UBERON:0002553 ! anatomical cavity -relationship: BFO:0000050 UBERON:0005906 ! serous sac +relationship: BFO:0000050 UBERON:0005906 ! part of serous sac [Term] id: UBERON:0035820 @@ -35085,8 +35084,8 @@ name: peritoneal sac def: "A serous sac that is the aggregate of the peritoneum and the peritoneal cavity, located in the abdominal cavity." [] synonym: "peritoneal component" RELATED [] is_a: UBERON:0005906 ! serous sac -relationship: BFO:0000051 UBERON:0001179 ! peritoneal cavity -relationship: BFO:0000051 UBERON:0002358 ! peritoneum +relationship: BFO:0000051 UBERON:0001179 ! has part peritoneal cavity +relationship: BFO:0000051 UBERON:0002358 ! has part peritoneum [Term] id: UBERON:0035965 @@ -35096,9 +35095,9 @@ synonym: "vascular wall" RELATED [] is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: BFO:0000050 UBERON:0001981 ! blood vessel -relationship: BFO:0000050 UBERON:0001981 ! blood vessel -relationship: BFO:0000051 UBERON:0004797 ! blood vessel layer +intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel +relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel +relationship: BFO:0000051 UBERON:0004797 ! has part blood vessel layer [Term] id: UBERON:0036072 @@ -35109,9 +35108,9 @@ is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009854 ! digestive tract diverticulum is_a: UBERON:0015833 ! foregut epithelium intersection_of: UBERON:0007499 ! epithelial sac -intersection_of: BFO:0000050 UBERON:0008947 ! respiratory primordium -relationship: BFO:0000050 UBERON:0008947 ! respiratory primordium -relationship: RO:0002202 UBERON:0007690 ! early pharyngeal endoderm +intersection_of: BFO:0000050 UBERON:0008947 ! part of respiratory primordium +relationship: BFO:0000050 UBERON:0008947 ! part of respiratory primordium +relationship: RO:0002202 UBERON:0007690 ! develops_from early pharyngeal endoderm [Term] id: UBERON:0036073 @@ -35120,9 +35119,9 @@ synonym: "respiratory primordium associated mesenchyme" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme -intersection_of: BFO:0000050 UBERON:0008947 ! respiratory primordium -relationship: BFO:0000050 UBERON:0008947 ! respiratory primordium -relationship: RO:0002202 UBERON:0004873 ! splanchnopleure +intersection_of: BFO:0000050 UBERON:0008947 ! part of respiratory primordium +relationship: BFO:0000050 UBERON:0008947 ! part of respiratory primordium +relationship: RO:0002202 UBERON:0004873 ! develops_from splanchnopleure [Term] id: UBERON:0036146 @@ -35142,14 +35141,14 @@ synonym: "follicle" BROAD [] synonym: "skin follicle" EXACT [] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0000014 ! zone of skin +relationship: BFO:0000050 UBERON:0000014 ! part of zone of skin [Term] id: UBERON:0036215 name: anatomical surface region def: "Material anatomical entity that forms the outermost boundary of an anatomical structure." [] is_a: UBERON:0000465 ! material anatomical entity -relationship: BFO:0000050 UBERON:0000061 ! anatomical structure +relationship: BFO:0000050 UBERON:0000061 ! part of anatomical structure [Term] id: UBERON:0036225 @@ -35157,8 +35156,8 @@ name: respiratory system gland def: "Any gland that is part os the respiratory system." [] is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -relationship: BFO:0000050 UBERON:0001004 ! respiratory system +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0036245 @@ -35170,8 +35169,8 @@ synonym: "parenchyma of lactiferous gland" EXACT [] is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0001911 ! mammary gland -relationship: BFO:0000050 UBERON:0001911 ! mammary gland +intersection_of: BFO:0000050 UBERON:0001911 ! part of mammary gland +relationship: BFO:0000050 UBERON:0001911 ! part of mammary gland [Term] id: UBERON:0036253 @@ -35180,8 +35179,8 @@ synonym: "cranial orifice" EXACT [] synonym: "skull orifice" EXACT [] is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice -intersection_of: BFO:0000050 UBERON:0003129 ! skull -relationship: BFO:0000050 UBERON:0003129 ! skull +intersection_of: BFO:0000050 UBERON:0003129 ! part of skull +relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:1000021 @@ -35191,8 +35190,8 @@ synonym: "face skin" EXACT [] synonym: "facial skin" RELATED [] is_a: UBERON:0001084 ! skin of head intersection_of: UBERON:0000014 ! zone of skin -intersection_of: BFO:0000050 UBERON:0001456 ! face -relationship: BFO:0000050 UBERON:0001456 ! face +intersection_of: BFO:0000050 UBERON:0001456 ! part of face +relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:1000023 @@ -35203,7 +35202,7 @@ synonym: "pulp of spleen" EXACT [] synonym: "splenic pulp" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: BFO:0000050 UBERON:1000024 ! parenchyma of spleen +relationship: BFO:0000050 UBERON:1000024 ! part of parenchyma of spleen [Term] id: UBERON:1000024 @@ -35213,8 +35212,8 @@ synonym: "splenic parenchyma" EXACT [] is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma -intersection_of: BFO:0000050 UBERON:0002106 ! spleen -relationship: BFO:0000050 UBERON:0002106 ! spleen +intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen +relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:2000120 @@ -35224,8 +35223,8 @@ synonym: "lateral line ganglia" EXACT [] synonym: "LLG" EXACT [] is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: BFO:0000050 UBERON:0002540 ! lateral line system -relationship: RO:0002202 UBERON:0009128 ! lateral line placode +relationship: BFO:0000050 UBERON:0002540 ! part of lateral line system +relationship: RO:0002202 UBERON:0009128 ! develops_from lateral line placode [Term] id: UBERON:2000175 @@ -35233,7 +35232,7 @@ name: posterior lateral line nerve def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [] synonym: "caudal lateral line nerve" EXACT [] is_a: UBERON:0008906 ! lateral line nerve -relationship: BFO:0000050 UBERON:2001471 ! posterior lateral line system +relationship: BFO:0000050 UBERON:2001471 ! part of posterior lateral line system [Term] id: UBERON:2000228 @@ -35241,7 +35240,7 @@ name: lateral line primordium synonym: "lateral line primordia" EXACT [] synonym: "llp" EXACT [] is_a: UBERON:0000479 ! tissue -relationship: BFO:0000050 UBERON:0002540 ! lateral line system +relationship: BFO:0000050 UBERON:0002540 ! part of lateral line system [Term] id: UBERON:2000425 @@ -35249,14 +35248,14 @@ name: anterior lateral line nerve def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [] synonym: "rostral lateral line nerve" EXACT [] is_a: UBERON:0008906 ! lateral line nerve -relationship: BFO:0000050 UBERON:2001468 ! anterior lateral line system +relationship: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system [Term] id: UBERON:2001156 name: posterior lateral line placode is_a: UBERON:0003067 ! dorsolateral placode disjoint_from: UBERON:2001316 ! anterior lateral line placode -relationship: BFO:0000050 UBERON:2001471 ! posterior lateral line system +relationship: BFO:0000050 UBERON:2001471 ! part of posterior lateral line system [Term] id: UBERON:2001314 @@ -35264,7 +35263,7 @@ name: posterior lateral line ganglion def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [] is_a: UBERON:2000120 ! lateral line ganglion disjoint_from: UBERON:2001391 ! anterior lateral line ganglion -relationship: RO:0002202 UBERON:2001156 ! posterior lateral line placode +relationship: RO:0002202 UBERON:2001156 ! develops_from posterior lateral line placode [Term] id: UBERON:2001316 @@ -35274,8 +35273,8 @@ synonym: "anterior lateral line placodes" RELATED [] synonym: "pre-auditory lateral line placode" RELATED [] is_a: UBERON:0003067 ! dorsolateral placode intersection_of: UBERON:0003067 ! dorsolateral placode -intersection_of: BFO:0000050 UBERON:2001468 ! anterior lateral line system -relationship: BFO:0000050 UBERON:2001468 ! anterior lateral line system +intersection_of: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system +relationship: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system [Term] id: UBERON:2001391 @@ -35284,15 +35283,15 @@ def: "The anteror lateral line ganglia develops from cranial ectodermal placodes synonym: "anterior lateral line ganglia" RELATED [] is_a: UBERON:2000120 ! lateral line ganglion intersection_of: UBERON:2000120 ! lateral line ganglion -intersection_of: BFO:0000050 UBERON:2001468 ! anterior lateral line system -relationship: BFO:0000050 UBERON:2001468 ! anterior lateral line system +intersection_of: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system +relationship: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system [Term] id: UBERON:2001431 name: primitive olfactory epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium -relationship: BFO:0000050 UBERON:0003050 ! olfactory placode +relationship: BFO:0000050 UBERON:0003050 ! part of olfactory placode [Term] id: UBERON:2001457 @@ -35300,8 +35299,8 @@ name: postcranial axial cartilage def: "Cartilage which is part of the axial skeleton." [] is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element -intersection_of: BFO:0000050 UBERON:0002090 ! postcranial axial skeleton -relationship: BFO:0000050 UBERON:0002090 ! postcranial axial skeleton +intersection_of: BFO:0000050 UBERON:0002090 ! part of postcranial axial skeleton +relationship: BFO:0000050 UBERON:0002090 ! part of postcranial axial skeleton [Term] id: UBERON:2001468 @@ -35316,9 +35315,9 @@ name: anterior lateral line def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [] is_a: UBERON:0010202 ! lateral line intersection_of: UBERON:0010202 ! lateral line -intersection_of: BFO:0000050 UBERON:2001468 ! anterior lateral line system -relationship: BFO:0000050 UBERON:2001468 ! anterior lateral line system -relationship: RO:0002202 UBERON:2005117 ! anterior lateral line primordium +intersection_of: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system +relationship: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system +relationship: RO:0002202 UBERON:2005117 ! develops_from anterior lateral line primordium [Term] id: UBERON:2001471 @@ -35332,7 +35331,7 @@ name: anterior lateral line primordium def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [] synonym: "anterior lateral line primordia" EXACT [] is_a: UBERON:2000228 ! lateral line primordium -relationship: BFO:0000050 UBERON:2001468 ! anterior lateral line system +relationship: BFO:0000050 UBERON:2001468 ! part of anterior lateral line system [Term] id: UBERON:2005227 @@ -35341,7 +35340,7 @@ synonym: "immature neuromast" RELATED [] synonym: "proto neuromast" RELATED [] synonym: "proto-neuromast" RELATED [] is_a: UBERON:0000477 ! anatomical cluster -relationship: BFO:0000050 UBERON:0002540 ! lateral line system +relationship: BFO:0000050 UBERON:0002540 ! part of lateral line system [Term] id: UBERON:2005260 @@ -35364,8 +35363,8 @@ name: external integument structure def: "Structures of the dermis, epidermis, glands and pigment cells recognizable on the external surfaces of the integument." [] is_a: UBERON:0003102 ! surface structure intersection_of: UBERON:0003102 ! surface structure -intersection_of: BFO:0000050 UBERON:0002199 ! integument -relationship: BFO:0000050 UBERON:0002199 ! integument +intersection_of: BFO:0000050 UBERON:0002199 ! part of integument +relationship: BFO:0000050 UBERON:0002199 ! part of integument [Term] id: UBERON:3000972 @@ -35373,8 +35372,8 @@ name: head external integument structure def: "Dermal, epidermal, glandular and pigment structures of the external head integument." [] is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure -intersection_of: BFO:0000050 UBERON:0000033 ! head -relationship: BFO:0000050 UBERON:0000033 ! head +intersection_of: BFO:0000050 UBERON:0000033 ! part of head +relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:3000977 @@ -35382,8 +35381,8 @@ name: body external integument structure def: "Dermal, epidermal, glandular and pigment structures of the body integument." [] is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure -intersection_of: BFO:0000050 UBERON:0002100 ! trunk -relationship: BFO:0000050 UBERON:0002100 ! trunk +intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk +relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:3000981 @@ -35391,8 +35390,8 @@ name: limb external integument structure def: "Dermal, epidermal, glandular and pigment structures of the limb integument." [] is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure -intersection_of: BFO:0000050 UBERON:0002101 ! limb -relationship: BFO:0000050 UBERON:0002101 ! limb +intersection_of: BFO:0000050 UBERON:0002101 ! part of limb +relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:3010200 @@ -35400,9 +35399,9 @@ name: vasculature of respiratory integument def: "Blood vessels in respiratory skin." [] is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel -intersection_of: BFO:0000050 UBERON:0001004 ! respiratory system -intersection_of: BFO:0000050 UBERON:0002199 ! integument -relationship: BFO:0000050 UBERON:0002199 ! integument +intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system +intersection_of: BFO:0000050 UBERON:0002199 ! part of integument +relationship: BFO:0000050 UBERON:0002199 ! part of integument [Term] id: UBERON:4000013 @@ -35417,8 +35416,8 @@ name: skeletal element projection def: "Anatomical projection that is composed of bone or cartilage tissue." [] is_a: UBERON:0004529 ! anatomical projection intersection_of: UBERON:0004529 ! anatomical projection -intersection_of: BFO:0000050 UBERON:0004765 ! skeletal element -relationship: BFO:0000050 UBERON:0004765 ! skeletal element +intersection_of: BFO:0000050 UBERON:0004765 ! part of skeletal element +relationship: BFO:0000050 UBERON:0004765 ! part of skeletal element [Term] id: UBERON:4200172 @@ -35431,8 +35430,8 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ -intersection_of: BFO:0000050 UBERON:0000976 ! humerus -relationship: BFO:0000050 UBERON:0004411 ! proximal epiphysis of humerus +intersection_of: BFO:0000050 UBERON:0000976 ! part of humerus +relationship: BFO:0000050 UBERON:0004411 ! part of proximal epiphysis of humerus [Term] id: UBERON:5001466 @@ -35444,10 +35443,10 @@ synonym: "pedal digit digitopodial subdivision" EXACT [] synonym: "pedal digit ray" EXACT [] is_a: UBERON:5002544 ! digit plus metapodial segment intersection_of: UBERON:5002544 ! digit plus metapodial segment -intersection_of: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000050 UBERON:0002387 ! pes -relationship: BFO:0000051 UBERON:0001466 ! pedal digit -relationship: BFO:0000051 UBERON:5101466 ! pedal digit digitopodial skeleton +intersection_of: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000050 UBERON:0002387 ! part of pes +relationship: BFO:0000051 UBERON:0001466 ! has part pedal digit +relationship: BFO:0000051 UBERON:5101466 ! has part pedal digit digitopodial skeleton [Term] id: UBERON:5002389 @@ -35459,10 +35458,10 @@ synonym: "manual digit digitopodial subdivision" EXACT [] synonym: "manual digit ray" EXACT [] is_a: UBERON:5002544 ! digit plus metapodial segment intersection_of: UBERON:5002544 ! digit plus metapodial segment -intersection_of: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000050 UBERON:0002102 ! forelimb -relationship: BFO:0000051 UBERON:0002389 ! manual digit -relationship: BFO:0000051 UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000050 UBERON:0002102 ! part of forelimb +relationship: BFO:0000051 UBERON:0002389 ! has part manual digit +relationship: BFO:0000051 UBERON:5102389 ! has part manual digit digitopodial skeleton [Term] id: UBERON:5002544 @@ -35473,9 +35472,9 @@ synonym: "digit ( phalanges plus metapodial) plus soft tissue" BROAD [] synonym: "digit digitopodial subdivision" EXACT [] synonym: "digit ray" EXACT [] is_a: UBERON:0000475 ! organism subdivision -relationship: BFO:0000050 UBERON:0012140 ! digitopodium region -relationship: BFO:0000051 UBERON:0002544 ! digit -relationship: BFO:0000051 UBERON:5102544 ! individual digit of digitopodial skeleton +relationship: BFO:0000050 UBERON:0012140 ! part of digitopodium region +relationship: BFO:0000051 UBERON:0002544 ! has part digit +relationship: BFO:0000051 UBERON:5102544 ! has part individual digit of digitopodial skeleton [Term] id: UBERON:5101466 @@ -35484,7 +35483,7 @@ def: "A subdivision of the skeleton of the autopod consisting of the phalanges o synonym: "pedal digit" RELATED [] synonym: "pedal digit skeleton" RELATED [] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton -relationship: BFO:0000050 UBERON:5001466 ! pedal digit plus metapodial segment +relationship: BFO:0000050 UBERON:5001466 ! part of pedal digit plus metapodial segment [Term] id: UBERON:5102389 @@ -35493,7 +35492,7 @@ def: "A subdivision of the skeleton of the autopod consisting of the phalanges o synonym: "manual digit" RELATED [] synonym: "manual digit skeleton" RELATED [] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton -relationship: BFO:0000050 UBERON:5002389 ! manual digit plus metapodial segment +relationship: BFO:0000050 UBERON:5002389 ! part of manual digit plus metapodial segment [Term] id: UBERON:5102544 @@ -35503,21 +35502,30 @@ synonym: "digit" RELATED [] synonym: "digit skeleton" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision -relationship: BFO:0000050 UBERON:0012150 ! skeleton of digitopodium -relationship: BFO:0000050 UBERON:5002544 ! digit plus metapodial segment +relationship: BFO:0000050 UBERON:0012150 ! part of skeleton of digitopodium +relationship: BFO:0000050 UBERON:5002544 ! part of digit plus metapodial segment [Typedef] id: BFO:0000050 +name: part of is_transitive: true -inverse_of: BFO:0000051 +inverse_of: BFO:0000051 ! has part [Typedef] id: BFO:0000051 +name: has part is_transitive: true [Typedef] id: RO:0002202 +name: develops_from holds_over_chain: BFO:0000050 RO:0002202 is_transitive: true -transitive_over: BFO:0000050 +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: RO:0002495 +name: immediate transformation of +synonym: "direct_transformation_of" EXACT [] +synonym: "immediately transforms from" EXACT [] diff --git a/src/ontology/imports/uberon_import.owl b/src/ontology/imports/uberon_import.owl index 1dac947f8..fe6f0eb19 100644 --- a/src/ontology/imports/uberon_import.owl +++ b/src/ontology/imports/uberon_import.owl @@ -1,13 +1,17 @@ + xmlns:obo="http://purl.obolibrary.org/obo/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:dc="http://purl.org/dc/elements/1.1/"> @@ -29,18 +33,180 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -53,12 +219,42 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + direct_transformation_of + immediately transforms from + immediate transformation of @@ -225,7 +434,7 @@ - + @@ -842,7 +1051,7 @@ - + @@ -2215,7 +2424,7 @@ - + @@ -4133,7 +4342,7 @@ - + @@ -4150,7 +4359,7 @@ - + @@ -4167,7 +4376,7 @@ - + @@ -4355,7 +4564,7 @@ - + @@ -4960,7 +5169,7 @@ - + @@ -5241,7 +5450,7 @@ - + @@ -5277,7 +5486,7 @@ - + @@ -5919,7 +6128,7 @@ - + @@ -8695,7 +8904,7 @@ - + @@ -11169,7 +11378,7 @@ - + @@ -11263,7 +11472,7 @@ - + @@ -11841,7 +12050,7 @@ - + @@ -12742,12 +12951,23 @@ + + + + + + + + + + + - + @@ -13712,7 +13932,7 @@ - + @@ -13731,7 +13951,7 @@ - + @@ -13790,7 +14010,7 @@ - + @@ -13816,7 +14036,7 @@ - + @@ -13839,7 +14059,7 @@ - + @@ -15340,7 +15560,7 @@ - + @@ -15691,7 +15911,7 @@ - + @@ -16186,7 +16406,7 @@ - + @@ -16397,7 +16617,7 @@ - + @@ -16419,7 +16639,7 @@ - + @@ -17389,7 +17609,7 @@ - + @@ -18198,7 +18418,7 @@ - + @@ -19854,7 +20074,7 @@ - + @@ -19873,7 +20093,7 @@ - + @@ -22487,7 +22707,7 @@ - + @@ -22587,7 +22807,7 @@ - + @@ -22904,7 +23124,7 @@ - + @@ -22952,7 +23172,7 @@ - + @@ -24854,7 +25074,7 @@ - + @@ -32893,10 +33113,21 @@ + + + + + + + + + + + - + @@ -34357,7 +34588,7 @@ - + @@ -45487,7 +45718,7 @@ - + @@ -46730,15 +46961,6 @@ - - - - - true - - - - @@ -47936,7 +48158,7 @@ - + @@ -48105,7 +48327,7 @@ - + @@ -50477,7 +50699,7 @@ - + @@ -58809,7 +59031,7 @@ - + @@ -60803,7 +61025,7 @@ - + @@ -78814,5 +79036,5 @@ - +