From e3d9aa4b7b33dfff84deb29041ec640d0e26ce7f Mon Sep 17 00:00:00 2001 From: CEastwood <116108977+Caroline-99@users.noreply.github.com> Date: Thu, 5 Dec 2024 14:53:38 +0000 Subject: [PATCH] Fixes #2776 - respiratory suprabasal cell textual definition (#2819) * Fixes #2776 Updated the textual definition to include information from the Lung Atlas Jamboree * Update cl-edit.owl --- src/ontology/cl-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 401e04824..0f7c06763 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32018,14 +32018,14 @@ EquivalentClasses(obo:CL_4033047 ObjectIntersectionOf(obo:CL_4023033 obo:CL_4023 # Class: obo:CL_4033048 (respiratory tract suprabasal cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25564622") obo:IAO_0000115 obo:CL_4033048 "A respiratory epithelial cell with topographic nuclear position in between the basal and luminal cell of the airway epithelium. This non-basal, intermediate cell has limited proliferative capacity, ultrastructural features of basal cells and no defined features of the typically differentiated cellular phenotypes.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25564622") Annotation(oboInOwl:hasDbXref "PMID:34044844") Annotation(oboInOwl:hasDbXref "PMID:35387001") Annotation(oboInOwl:hasDbXref "PMID:37834236") obo:IAO_0000115 obo:CL_4033048 "A respiratory epithelial cell derived from a basal cell, with a topographic nuclear position between the basal and luminal cells of the airway epithelium. This non-basal, intermediate progenitor cell has limited proliferative capacity and can differentiate into multiciliated, secretory, or rare airway cells (ionocytes, tuft cells, neuroendocrine cells). It shares some ultrastructural features with basal cells but lacks the defined characteristics of fully differentiated cellular phenotypes.") AnnotationAssertion(terms:contributor obo:CL_4033048 ) AnnotationAssertion(terms:contributor obo:CL_4033048 ) AnnotationAssertion(terms:date obo:CL_4033048 "2023-06-20T10:44:30Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25564622") oboInOwl:hasExactSynonym obo:CL_4033048 "respiratory parabasal cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4033048 "respiratory suprabasal cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25658372") oboInOwl:hasExactSynonym obo:CL_4033048 "respiratory suprabasal progenitor cell") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25658372") Annotation(oboInOwl:hasDbXref "doi:10.1101/2023.04.20.537495") rdfs:comment obo:CL_4033048 "In humans, respiratory suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25658372") Annotation(oboInOwl:hasDbXref "PMID:32726565") Annotation(oboInOwl:hasDbXref "doi:10.1101/2023.04.20.537495") rdfs:comment obo:CL_4033048 "In humans, respiratory tract suprabasal cells have been noted to have enriched expression of the following: CK8, KRT13, IVL, and SERPINB3. Single-cell sequencing indicates that suprabasal cells derived from the nasal epithelium are distinct from those in the tracheobronchial epithelium.") AnnotationAssertion(rdfs:label obo:CL_4033048 "respiratory tract suprabasal cell") SubClassOf(obo:CL_4033048 obo:CL_0000066) SubClassOf(obo:CL_4033048 obo:CL_0011026)