From c51375913abcb1f5acdf44eedfbb91ed9bd675a9 Mon Sep 17 00:00:00 2001 From: paolaroncaglia Date: Thu, 22 Apr 2021 18:03:33 +0200 Subject: [PATCH] Add 6 grouping terms for appendix Addresses #999 , #1000 , #1018 , #1019 , #1020 and #1035 --- src/ontology/cl-edit.owl | 80 ++++++++++++++++++++++++++++++++++++++-- 1 file changed, 76 insertions(+), 4 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 3cd2cb3c2..d56b70e32 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -1892,6 +1892,12 @@ Declaration(Class(obo:CL_0009025)) Declaration(Class(obo:CL_0009026)) Declaration(Class(obo:CL_0009027)) Declaration(Class(obo:CL_0009028)) +Declaration(Class(obo:CL_0009029)) +Declaration(Class(obo:CL_0009030)) +Declaration(Class(obo:CL_0009031)) +Declaration(Class(obo:CL_0009032)) +Declaration(Class(obo:CL_0009033)) +Declaration(Class(obo:CL_0009034)) Declaration(Class(obo:CL_0010000)) Declaration(Class(obo:CL_0010001)) Declaration(Class(obo:CL_0010002)) @@ -22341,6 +22347,72 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009028 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "appendix mesothelial cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "mesothelial cell of appendix vermiformis") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009029 "mesothelial cell of vermiform appendix") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009029 ) +AnnotationAssertion(rdfs:label obo:CL_0009029 "mesothelial cell of appendix") +EquivalentClasses(obo:CL_0009029 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) + +# Class: obo:CL_0009030 (enteroendocrine cell of appendix) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009030 "An intestinal enteroendocrine cell that is located in a vermiform appendix.") +AnnotationAssertion(oboInOwl:created_by obo:CL_0009030 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "appendix enteroendocrine cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "enteroendocrine cell of appendix vermiformis") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009030 "enteroendocrine cell of vermiform appendix") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009030 ) +AnnotationAssertion(rdfs:label obo:CL_0009030 "enteroendocrine cell of appendix") +EquivalentClasses(obo:CL_0009030 ObjectIntersectionOf(obo:CL_1001516 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) + +# Class: obo:CL_0009031 (T cell of appendix) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009031 "A T cell that is located in a vermiform appendix.") +AnnotationAssertion(oboInOwl:created_by obo:CL_0009031 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "T cell of appendix vermiformis") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "T cell of vermiform appendix") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009031 "appendix T cell") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009031 ) +AnnotationAssertion(rdfs:label obo:CL_0009031 "T cell of appendix") +EquivalentClasses(obo:CL_0009031 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) + +# Class: obo:CL_0009032 (B cell of appendix) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009032 "A B cell that is located in a vermiform appendix.") +AnnotationAssertion(oboInOwl:created_by obo:CL_0009032 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "B cell of appendix vermiformis") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "B cell of vermiform appendix") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009032 "appendix B cell") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009032 ) +AnnotationAssertion(rdfs:label obo:CL_0009032 "B cell of appendix") +EquivalentClasses(obo:CL_0009032 ObjectIntersectionOf(obo:CL_0000236 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) + +# Class: obo:CL_0009033 (plasma cell of appendix) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009033 "A plasma cell that is located in a vermiform appendix.") +AnnotationAssertion(oboInOwl:created_by obo:CL_0009033 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "appendix plasma cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "plasma cell of appendix vermiformis") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009033 "plasma cell of vermiform appendix") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009033 ) +AnnotationAssertion(rdfs:label obo:CL_0009033 "plasma cell of appendix") +EquivalentClasses(obo:CL_0009033 ObjectIntersectionOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) + +# Class: obo:CL_0009034 (dendritic cell of appendix) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://orcid.org/0000-0003-3440-1876") obo:IAO_0000115 obo:CL_0009034 "A dendritic cell that is located in a vermiform appendix.") +AnnotationAssertion(oboInOwl:created_by obo:CL_0009034 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "appendix dendritic cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "dendritic cell of appendix vermiformis") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009034 "dendritic cell of vermiform appendix") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0009034 ) +AnnotationAssertion(rdfs:label obo:CL_0009034 "dendritic cell of appendix") +EquivalentClasses(obo:CL_0009034 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) + # Class: obo:CL_0010000 (keratinized cell of hair follicle) AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) obo:IAO_0000115 obo:CL_0010000 "A hair follicle matrix region cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the hair bulb to become the hair medulla cortex and hair root sheath.") @@ -27564,9 +27636,9 @@ SubClassOf(obo:CL_4023008 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0001893 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023009 "A glutamatergic neuron located in the cerebral cortex that projects to structures not derived from telencephalon.") AnnotationAssertion( obo:CL_4023009 ) -AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023009 "ILX:0770101") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023009 "ET projecting neuron") +AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 ) AnnotationAssertion(rdfs:label obo:CL_4023009 "extratelencephalic-projecting glutamatergic cortical neuron") SubClassOf(obo:CL_4023009 obo:CL_0000679) SubClassOf(obo:CL_4023009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956)) @@ -27597,9 +27669,9 @@ EquivalentClasses(obo:CL_4023011 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeV AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023012 "A glutamatergic neuron located in the cerebral cortex that projects axons locally rather than distantly.") AnnotationAssertion( obo:CL_4023012 ) -AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023012 "ILX:0770103") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023012 "NP neuron") +AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 ) AnnotationAssertion(rdfs:label obo:CL_4023012 "near-projecting glutamatergic cortical neuron") SubClassOf(obo:CL_4023012 obo:CL_0000679) SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956)) @@ -27608,8 +27680,8 @@ SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023013 "A glutamatergic neuron located in the cerebral cortex that projects to the thalamus.") AnnotationAssertion( obo:CL_4023013 ) -AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 ) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023013 "CT projecting neuron") +AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 ) AnnotationAssertion(rdfs:label obo:CL_4023013 "corticothalamic-projecting glutamatergic cortical neuron") SubClassOf(obo:CL_4023013 obo:CL_0000679) SubClassOf(obo:CL_4023013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956)) @@ -28126,4 +28198,4 @@ SubClassOf(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33 obo:GO_0005634) SubClassOf(Annotation(oboInOwl:hasDbXref ) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031)) -) +) \ No newline at end of file