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[Typo/Bug] mononuclear & multinucleate phagocyte have no children! #1266

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dosumis opened this issue Sep 24, 2021 · 6 comments · Fixed by #2208
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[Typo/Bug] mononuclear & multinucleate phagocyte have no children! #1266

dosumis opened this issue Sep 24, 2021 · 6 comments · Fixed by #2208
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@dosumis
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dosumis commented Sep 24, 2021

CL term

mononuclear phagocyte http://purl.obolibrary.org/obo/CL_0000113

Description of typo, bug or error

image

@addiehl - any suggestions for how we might efficiently populate these classes?

@github-actions
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This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

@github-actions github-actions bot added the Stale label Mar 24, 2022
@paolaroncaglia
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Also see #561.

@github-actions github-actions bot removed the Stale label Apr 27, 2022
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This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

@github-actions github-actions bot added the Stale label Oct 24, 2022
@jychien
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jychien commented Sep 21, 2023

Additional references pertaining to this issue, which states monocyte, macrophages, and dendritic cells as children on mononuclear phagocytes (MNP):

You can also see in the macrophage definition that it is a mononuclear phagocyte.
Screenshot 2023-09-21 at 10 56 05 AM

Also, is there a reason why mononuclear phagocyte is not a child of mononuclear cell?

I think the general confusion is that under leukocyte, there is a division between mononuclear cell and myeloid cell. However, typically, the distinction is made between lymphocyte vs myeloid cells because the cell lineage is derived from common lymphoid progenitor and common myeloid progenitor. There are many diagrams online, but here is one from wikipedia.

Screenshot 2023-09-21 at 11 11 37 AM

@dosumis
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dosumis commented Oct 18, 2023

  • TODO - mononuclear phagocyte should be under 'mononuclear cell'
  • TODO - populate subclasses under 'mononuclear phagocyte'
    These are currently under the general term 'phagocyte'

@aleixpuigb
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aleixpuigb commented Oct 26, 2023

TODO - populate subclasses under 'mononuclear phagocyte'

macrophage
monocyte
dendritic cell
mononuclear osteoclast - This should be reasoned, as osteoclast should be classified as a phagocytic cell. However, as it is not (but it is on the textual definition), it is not included. I will add to the parent term SubclassOf 'phagocyte (sensu Vertebrata)' to ammend it.

aleixpuigb added a commit that referenced this issue Oct 26, 2023
Fixes #1266 populate mononuclear phagocyte
@aleixpuigb aleixpuigb removed the Stale label Nov 9, 2023
aleixpuigb added a commit that referenced this issue Nov 13, 2023
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6 participants