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[NTR] laminin enterocyte of colon #2583

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JABelfiore opened this issue Sep 19, 2024 · 0 comments · May be fixed by #2609
Open

[NTR] laminin enterocyte of colon #2583

JABelfiore opened this issue Sep 19, 2024 · 0 comments · May be fixed by #2609
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cellxgene GutCellAtlas HCA/DCP Needed/useful for the Human Cell Atlas new term request

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@JABelfiore
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Please check that the term does not already exist by using the ontology search tool OLS:
https://www.ebi.ac.uk/ols4/ontologies/cl

Preferred term label
laminin enterocyte of colon

Synonyms (add reference(s), please)

Definition (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)

An enterocyte located in the epithelium of the large intestine. This cell expresses and interacts with specific laminin isoforms, particularly laminin-332 (composed of α3, β3, and γ2 chains) and laminin-511 (composed of α5, β1, and γ1 chains). Laminin enterocytes of the colon are attached to the basement membrane via hemidesmosomes containing α6β4 integrin, which binds to laminins. This cell exhibits differential expression of laminin chains along the crypt-surface axis[PMID:14585148][PMID:35101094].

Parent cell type term (check the hierarchy here https://www.ebi.ac.uk/ols4/ontologies/cl)
enterocyte of colon

Anatomical structure where the cell type is found (check Uberon for anatomical structures: https://www.ebi.ac.uk/ols4/ontologies/uberon)
part of wall of crypt of Lieberkuhn
Your ORCID
https://orcid.org/0009-0005-7919-4905

Additional notes or concerns

@JABelfiore JABelfiore added new term request HCA/DCP Needed/useful for the Human Cell Atlas cellxgene GutCellAtlas labels Sep 19, 2024
@JABelfiore JABelfiore added this to the pre HCA meeting release milestone Sep 19, 2024
@JABelfiore JABelfiore self-assigned this Sep 19, 2024
@JABelfiore JABelfiore linked a pull request Sep 24, 2024 that will close this issue
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Labels
cellxgene GutCellAtlas HCA/DCP Needed/useful for the Human Cell Atlas new term request
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