Fixes #2955 - NTR tuft cell of stomach

[Caroline-99]

Fixes #2955

• NTR tuft cell of stomach

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-02-12/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-02-12/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

tuft cell of stomach http://purl.obolibrary.org/obo/CL_4052040

Added

• tuft cell of stomach IAO_0000115 "A tuft cell that is part of the epithelium of the stomach. This cell is characterized by gastric chemosensation and immune regulation through IL-25 secretion, which activates ILC2s to produce IL-13, driving epithelial remodelling and tuft cell expansion. Unlike intestinal tuft cells, which are primarily involved in helminth defense and type 2 immunity, the tuft cell of the stomach is primarily involved in inflammation, metaplasia, and hyperplasia."

  • hasDbXref "PMID:38117182"

  • hasDbXref "doi:/10.1101/2022.02.16.480779"

  • hasDbXref "PMID:22527717"

• tuft cell of stomach hasExactSynonym "gastric tuft cell"

  • hasDbXref "PMID:38117182"

• tuft cell of stomach date "2025-02-12T11:24:56Z"^^dateTime

• tuft cell of stomach label "tuft cell of stomach"

• tuft cell of stomach contributor 0009-0000-8480-9277

• Class: tuft cell of stomach

• tuft cell of stomach EquivalentTo brush cell and (BFO_0000050 some UBERON_0001276)

• tuft cell of stomach SubClassOf epithelial cell of stomach

• tuft cell of stomach SubClassOf brush cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

tuft cell of stomach http://purl.obolibrary.org/obo/CL_4052040

Added

• tuft cell of stomach definition "A tuft cell that is part of the epithelium of the stomach. This cell is characterized by gastric chemosensation and immune regulation through IL-25 secretion, which activates ILC2s to produce IL-13, driving epithelial remodelling and tuft cell expansion. Unlike intestinal tuft cells, which are primarily involved in helminth defense and type 2 immunity, the tuft cell of the stomach is primarily involved in inflammation, metaplasia, and hyperplasia."

  • database_cross_reference "PMID:38117182"

  • database_cross_reference "doi:/10.1101/2022.02.16.480779"

  • database_cross_reference "PMID:22527717"

• tuft cell of stomach has_exact_synonym "gastric tuft cell"

  • database_cross_reference "PMID:38117182"

• tuft cell of stomach date "2025-02-12T11:24:56Z"^^dateTime

• tuft cell of stomach label "tuft cell of stomach"

• tuft cell of stomach contributor 0009-0000-8480-9277

• Class: tuft cell of stomach

• tuft cell of stomach EquivalentTo brush cell and (part of some epithelium of stomach)