diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index c25e1f227..883874eba 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2705,10 +2705,8 @@ Declaration(ObjectProperty(obo:RO_0002202)) Declaration(ObjectProperty(obo:RO_0002215)) Declaration(ObjectProperty(obo:RO_0002292)) Declaration(ObjectProperty(obo:RO_0013001)) -Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) -Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(AnnotationProperty()) @@ -2869,10 +2867,6 @@ AnnotationAssertion(rdfs:label rdfs:seeAlso "see also"^^xsd:string) # Object Properties ############################ -# Object Property: (has_completed) - -AnnotationAssertion(rdfs:label "has_completed"^^xsd:string) - # Object Property: (has_high_plasma_membrane_amount) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19243617"^^xsd:string) obo:IAO_0000115 "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al (PMID:19243617)."^^xsd:string) @@ -2885,10 +2879,6 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19243617"^^xsd:string) o AnnotationAssertion(rdfs:label "has_low_plasma_membrane_amount"^^xsd:string) SubObjectPropertyOf( obo:RO_0002104) -# Object Property: (has_not_completed) - -AnnotationAssertion(rdfs:label "has_not_completed"^^xsd:string) - # Object Property: (lacks_part) AnnotationAssertion(obo:IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 ?Y"^^xsd:string) @@ -7412,7 +7402,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000492 "CD4-positive helper T cell"^^xsd: EquivalentClasses(obo:CL_0000492 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000492 obo:CL_0000624) SubClassOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) -SubClassOf(obo:CL_0000492 ObjectSomeValuesFrom( obo:GO_0030217)) +SubClassOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000493 (obsolete regulatory T cell) @@ -9035,7 +9025,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000654 "FMA:18645"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000654 "cell"^^xsd:string) AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000654 "primary oogonium"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000654 "primary oocyte"^^xsd:string) -EquivalentClasses(obo:CL_0000654 ObjectIntersectionOf(obo:CL_0000023 ObjectSomeValuesFrom( obo:GO_0051321))) +EquivalentClasses(obo:CL_0000654 ObjectIntersectionOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051321))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000654 obo:CL_0000023) SubClassOf(obo:CL_0000654 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000024)) @@ -9047,7 +9037,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000655 "FMA:18646"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000655 "cell"^^xsd:string) AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000655 "primary oogonium"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000655 "secondary oocyte"^^xsd:string) -EquivalentClasses(obo:CL_0000655 ObjectIntersectionOf(obo:CL_0000023 ObjectSomeValuesFrom( obo:GO_0007147))) +EquivalentClasses(obo:CL_0000655 ObjectIntersectionOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007147))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000655 obo:CL_0000023) SubClassOf(obo:CL_0000655 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000654)) @@ -10254,7 +10244,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000785 "mature B-lymphocyte AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000785 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000785 "Mature B cells are also reportedly CD10-negative, CD19-positive, CD22-positive, CD34-negative, CD48-positive, CD79a-positive, CD84-positive, CD127-negative, CD352-positive, RAG-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Transcription factors expressed: Pax5-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000785 "mature B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000785 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042113) ObjectSomeValuesFrom( obo:GO_0002335))) +EquivalentClasses(obo:CL_0000785 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042113) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002335))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000785 obo:CL_0001201) SubClassOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000818)) DisjointClasses(obo:CL_0000785 obo:CL_0000816) @@ -10288,7 +10278,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000787 "memory B-lymphocyte AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000787 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000787 "Memory B-cells are also reportedly CD5-negative, CD10-negative, CD21-positive, CD22-positive, CD23-negative, CD24-positive, CD25-positive, CD27-positive, CD34-negative, CD38-negative, CD40-positive, CD43-negative, CD44-positive, CD45-positive, CD53-positive, CD80-negative, CD81-negative, CD86-positive, and CD196/CCR6-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000787 "memory B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000787 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom( obo:GO_0002344) ObjectSomeValuesFrom( obo:PR_000001935))) +EquivalentClasses(obo:CL_0000787 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002344) ObjectSomeValuesFrom( obo:PR_000001935))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000787 obo:CL_0000785) # Class: obo:CL_0000788 (naive B cell) @@ -10300,7 +10290,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000788 "naive B-lymphocyte" AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000788 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000788 "This cell type is compatible with the HIPC Lyoplate markers for 'naive B cell'. Per DSD: Naive B cells are also reportedly CD10-negative, CD19-positive, CD20-positive, CD21-positive, CD22-positive, CD25-negative, CD27-negative, CD34-negative, CD40-positive, CD43-negative, CD45-positive, CD48-positive, CD53-positive, CD80-negative, CD81-positive, CD84-positive, CD86-negative, CD95-negative, CD138-negative, CD150-positive, CD184/CXCR4-positive, CD185/CXCR5-positive, CD196/CCR6-positive, CD200-positive, CD229-positive, CD243-positive, CD289-positive, CD290-positive, CD352-positive, MHCII/HLA-DR-positive, cadherin 9-positive, and sIgH-positive, Transcription factors: Pax5-positive, ETS1-positive, FOXO1A-positive, KLF4-positive, KLF9-positive, MiTF-positive, OBF1-positive, PLZF-positive, and SpiB-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000788 "naive B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000788 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom( obo:GO_0002344) ObjectSomeValuesFrom( obo:PR_000001963))) +EquivalentClasses(obo:CL_0000788 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002344) ObjectSomeValuesFrom( obo:PR_000001963))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000788 obo:CL_0000785) SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000818)) @@ -10324,7 +10314,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000790 "immature alpha-beta AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000790 "immature alpha-beta T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000790 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000790 "immature alpha-beta T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000790 ObjectIntersectionOf(obo:CL_0000789 ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0000790 ObjectIntersectionOf(obo:CL_0000789 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000790 obo:CL_0000789) # Class: obo:CL_0000791 (mature alpha-beta T cell) @@ -10335,7 +10325,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000791 "mature alpha-beta T AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000791 "mature alpha-beta T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000791 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000791 "mature alpha-beta T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000791 ObjectIntersectionOf(obo:CL_0000789 ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0000791 ObjectIntersectionOf(obo:CL_0000789 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000791 obo:CL_0000789) SubClassOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000790)) @@ -10389,7 +10379,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000794 "CD8-positive, alpha AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000794 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000794 "Note that while T cells of this subset are loosely referred to 'cytotoxic T cells,' as many other T cell types, including CD4-positive, alpha-beta T cells and gamma-delta T cells exhibit cytotoxicity in vitro and in vivo."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000794 "CD8-positive, alpha-beta cytotoxic T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000794 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003466) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003499) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0033380) ObjectSomeValuesFrom( obo:GO_0030217))) +EquivalentClasses(obo:CL_0000794 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003466) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003499) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0033380) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000794 obo:CL_0000625) SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) @@ -10463,7 +10453,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000799 "immature gamma-delt AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000799 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000799 "Note that gamma-delta T cells have both thymic and extrathymic differentiation pathways."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000799 "immature gamma-delta T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000799 ObjectIntersectionOf(obo:CL_0000798 ObjectSomeValuesFrom( obo:GO_0042492) ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0000799 ObjectIntersectionOf(obo:CL_0000798 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042492) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000799 obo:CL_0000798) SubClassOf(obo:CL_0000799 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000807)) @@ -10475,7 +10465,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000800 "mature gamma-delta AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000800 "mature gamma-delta T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000800 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000800 "mature gamma-delta T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000800 ObjectIntersectionOf(obo:CL_0000798 ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0000800 ObjectIntersectionOf(obo:CL_0000798 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000800 obo:CL_0000798) SubClassOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000799)) @@ -10637,7 +10627,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000813 "memory T-cell"^^xsd AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000813 "memory T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000813 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000813 "memory T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000813 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom( obo:GO_0002286) ObjectSomeValuesFrom( obo:GO_0043379))) +EquivalentClasses(obo:CL_0000813 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002286) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000813 obo:CL_0002419) DisjointClasses(obo:CL_0000813 obo:CL_0000898) @@ -10654,7 +10644,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000814 "mature natural kill AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000814 "mature natural killer T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000814 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000814 "mature NK T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000814 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087) ObjectSomeValuesFrom( obo:GO_0030217))) +EquivalentClasses(obo:CL_0000814 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000814 obo:CL_0000791) SubClassOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002042)) @@ -10687,7 +10677,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:781735149"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000816 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000816 "Immature B cells are also reportedly CD5-positive, CD10-positive, CD19-positive, CD20-positive, CD21-positive, CD22-positive, CD24-positive, CD25-negative, CD27-negative, CD34-negative, CD38-positive, CD40-positive, CD43-negative, CD45-positive, CD48-positive, CD53-positive, CD79a-positive, CD80-negative, CD81-positive, CD86-negative, CD95-negative, CD127-negative, CD138-negative, CD185-positive, CD196-positive, MHCII/HLA-DR-positive, RAG-positive, TdT-negative, Vpre-B-negative, and preBCR-negative. Transcription factors expressed: Pax5-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000816 "immature B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000816 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom( obo:GO_0045190) ObjectSomeValuesFrom( obo:GO_0071738))) +EquivalentClasses(obo:CL_0000816 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045190) ObjectSomeValuesFrom( obo:GO_0071738))) SubClassOf(obo:CL_0000816 obo:CL_0001201) SubClassOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000954)) @@ -10716,7 +10706,7 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000818 "T3 B cell"^^xsd:st AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000818 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000818 "This cell type is compatible with the HIPC Lyoplate markers for 'transitional B cell'.") AnnotationAssertion(rdfs:label obo:CL_0000818 "transitional stage B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000818 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom( obo:PR_000001408) ObjectSomeValuesFrom( obo:PR_000001932) ObjectSomeValuesFrom( obo:GO_0002335))) +EquivalentClasses(obo:CL_0000818 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom( obo:PR_000001408) ObjectSomeValuesFrom( obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002335))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000818 obo:CL_0001201) SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000816)) @@ -11361,7 +11351,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000875 "resident monocyte"^ AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000875 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000875 "Markers: CCR2-CX3CCR1+ (human, mouse, rat); human: CD16+, CCR5+, CD32/FcgRII-high, MHCII+, CD86+; mouse: CD62L-Ly6C-."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000875 "non-classical monocyte"^^xsd:string) -EquivalentClasses(obo:CL_0000875 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0000587) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031294) ObjectSomeValuesFrom( obo:GO_0030224) ObjectSomeValuesFrom( obo:PR_000001206) ObjectSomeValuesFrom( obo:PR_000001002) ObjectSomeValuesFrom( obo:PR_000001020) ObjectSomeValuesFrom( obo:PR_000001289))) +EquivalentClasses(obo:CL_0000875 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0000587) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031294) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030224) ObjectSomeValuesFrom( obo:PR_000001206) ObjectSomeValuesFrom( obo:PR_000001002) ObjectSomeValuesFrom( obo:PR_000001020) ObjectSomeValuesFrom( obo:PR_000001289))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000875 obo:CL_0000576) SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002393)) @@ -11522,7 +11512,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000893 "XAO:0003159"^^xsd:string) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000893 "thymic lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000893 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000893 "thymocyte"^^xsd:string) -EquivalentClasses(obo:CL_0000893 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0000893 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000893 obo:CL_0002420) # Class: obo:CL_0000894 (DN1 thymic pro-T cell) @@ -11579,7 +11569,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000897 "CD4-positive, alpha AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000897 "cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000897 "T4.Mem.Sp") AnnotationAssertion(rdfs:label obo:CL_0000897 "CD4-positive, alpha-beta memory T cell") -EquivalentClasses(obo:CL_0000897 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom( obo:GO_0002286) ObjectSomeValuesFrom( obo:GO_0043379))) +EquivalentClasses(obo:CL_0000897 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002286) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(obo:CL_0000897 obo:CL_0000624) # Class: obo:CL_0000898 (naive T cell) @@ -11590,7 +11580,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000898 "naive T-cell"^^xsd: AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000898 "naive T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000898 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000898 "naive T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000898 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom( obo:GO_0045058) ObjectSomeValuesFrom( obo:PR_000001318) ObjectSomeValuesFrom( obo:PR_000001307))) +EquivalentClasses(obo:CL_0000898 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058) ObjectSomeValuesFrom( obo:PR_000001318) ObjectSomeValuesFrom( obo:PR_000001307))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000898 obo:CL_0002419) # Class: obo:CL_0000899 (T-helper 17 cell) @@ -11744,7 +11734,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000908 "CD8-positive, alpha AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000908 "CD8-positive, alpha-beta cytokine secreting effector T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000908 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000908 "CD8-positive, alpha-beta cytokine secreting effector T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000908 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom( obo:GO_0030217) ObjectSomeValuesFrom( obo:PR_000001318) ObjectSomeValuesFrom( obo:PR_000001869))) +EquivalentClasses(obo:CL_0000908 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217) ObjectSomeValuesFrom( obo:PR_000001318) ObjectSomeValuesFrom( obo:PR_000001869))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000908 obo:CL_0000625) SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) @@ -11758,7 +11748,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000909 "CD8-positive, alpha AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000909 "cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000909 "T.8Mem.Sp") AnnotationAssertion(rdfs:label obo:CL_0000909 "CD8-positive, alpha-beta memory T cell") -EquivalentClasses(obo:CL_0000909 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom( obo:GO_0002286) ObjectSomeValuesFrom( obo:GO_0043379))) +EquivalentClasses(obo:CL_0000909 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002286) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) # Class: obo:CL_0000910 (cytotoxic T cell) @@ -11782,7 +11772,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000911 "effector T-cell"^^x AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000911 "effector T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000911 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000911 "effector T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000911 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0045026) ObjectSomeValuesFrom( obo:GO_0030217) ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0000911 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0045026) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000911 obo:CL_0002419) # Class: obo:CL_0000912 (helper T cell) @@ -12116,7 +12106,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000934 "CD4-positive, alpha AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000934 "CD4-positive, alpha-beta cytotoxic T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000934 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000934 "CD4-positive, alpha-beta cytotoxic T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000934 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913) ObjectSomeValuesFrom( obo:GO_0030217))) +EquivalentClasses(obo:CL_0000934 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000934 obo:CL_0000624) SubClassOf(obo:CL_0000934 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) @@ -12190,7 +12180,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000940 "mucosal invariant T AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000940 "mucosal invariant T-lymphocyte"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000940 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000940 "mucosal invariant T cell"^^xsd:string) -EquivalentClasses(obo:CL_0000940 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002227) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394) ObjectSomeValuesFrom( obo:GO_0030217))) +EquivalentClasses(obo:CL_0000940 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002227) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000940 obo:CL_0000791) # Class: obo:CL_0000941 (thymic conventional dendritic cell) @@ -12303,7 +12293,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000951 obo:CL_0000975 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:rhs"^^xsd:string) Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "GO_REF:0000031"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:9785673"^^xsd:string) obo:IAO_0000115 obo:CL_0000952 "An preBRC-positive large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-positive, composed of surrogate light chain protein (SL), which is composed of VpreB , Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu) on the cell surface."^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000952 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000952 "preBCR-positive large pre-B-II cell"^^xsd:string) -EquivalentClasses(obo:CL_0000952 ObjectIntersectionOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001858) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001859) ObjectSomeValuesFrom( obo:GO_0071708))) +EquivalentClasses(obo:CL_0000952 ObjectIntersectionOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001858) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001859) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0071708))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000952 obo:CL_0000957) # Class: obo:CL_0000953 (preBCR-negative large pre-B-II cell) @@ -12311,7 +12301,7 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000952 obo:CL_0000957 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:rhs"^^xsd:string) Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) Annotation(oboInOwl:hasDbXref "GO_REF:0000031"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:9785673"^^xsd:string) obo:IAO_0000115 obo:CL_0000953 "A pre-BCR-negative large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-negative, composed of surrogate light chain protein (SL), which is composed of VpreB and Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu), on the cell surface, and lack a DNA rearrangement of immunoglobulin light chain genes."^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000953 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000953 "preBCR-negative large pre-B-II cell"^^xsd:string) -EquivalentClasses(obo:CL_0000953 ObjectIntersectionOf(obo:CL_0000957 ObjectSomeValuesFrom( obo:GO_0071708) ObjectSomeValuesFrom( obo:GO_0035369) ObjectSomeValuesFrom( obo:PR_000001858) ObjectSomeValuesFrom( obo:PR_000001859))) +EquivalentClasses(obo:CL_0000953 ObjectIntersectionOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0071708) ObjectSomeValuesFrom( obo:GO_0035369) ObjectSomeValuesFrom( obo:PR_000001858) ObjectSomeValuesFrom( obo:PR_000001859))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000953 obo:CL_0000957) # Class: obo:CL_0000954 (small pre-B-II cell) @@ -12334,7 +12324,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000955 "pre-BII cell"^^xsd: AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000955 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000955 "pre-B-II cell are also reportedly CD19-positive, CD22-positive, CD38-positive, CD45-positive, and CD48-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000955 "pre-B-II cell"^^xsd:string) -EquivalentClasses(obo:CL_0000955 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom( obo:GO_0071707) ObjectSomeValuesFrom( obo:PR_000006611) ObjectSomeValuesFrom( obo:PR_000001003))) +EquivalentClasses(obo:CL_0000955 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0071707) ObjectSomeValuesFrom( obo:PR_000006611) ObjectSomeValuesFrom( obo:PR_000001003))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000955 obo:CL_0000817) SubClassOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000826)) DisjointClasses(obo:CL_0000955 obo:CL_0000956) @@ -12480,7 +12470,7 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000966 "cell"^^xsd:string) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17992590"^^xsd:string) oboInOwl:hasRelatedSynonym obo:CL_0000966 "centrocyte"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000966 "Bm4 B cells are also reportedly CD10-positive, CD23-negative, CD39-negative, CD44-positive, and CD71-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000966 "Bm4 B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000966 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom( obo:GO_0016446) ObjectSomeValuesFrom( obo:GO_0071738) ObjectSomeValuesFrom( obo:PR_000003516))) +EquivalentClasses(obo:CL_0000966 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0016446) ObjectSomeValuesFrom( obo:GO_0071738) ObjectSomeValuesFrom( obo:PR_000003516))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000966 obo:CL_0000844) SubClassOf(obo:CL_0000966 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000963)) @@ -12493,7 +12483,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000967 "Bm5 B-lymphocyte"^^ AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000967 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000967 "Bm5 B cells are also reportedly CD10-positive, CD23-negative, CD38-negative, CD39-positive, CD44-positive, CD71-positive, and CD77-negative."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000967 "Bm5 B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000967 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom( obo:GO_0002314) ObjectSomeValuesFrom( obo:GO_0016446) ObjectSomeValuesFrom( obo:GO_0071738))) +EquivalentClasses(obo:CL_0000967 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002314) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0016446) ObjectSomeValuesFrom( obo:GO_0071738))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000967 obo:CL_0000787) SubClassOf(obo:CL_0000967 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000966)) @@ -12565,7 +12555,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000972 "class switched memo AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0000972 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0000972 "Per DSD: Class switched memory B cells are also reportedly CD48-positive, CD229-positive, and CD352-positive."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0000972 "class switched memory B cell"^^xsd:string) -EquivalentClasses(obo:CL_0000972 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom( obo:GO_0045190) ObjectSomeValuesFrom( obo:GO_0071753))) +EquivalentClasses(obo:CL_0000972 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045190) ObjectSomeValuesFrom( obo:GO_0071753))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000972 obo:CL_0000787) SubClassOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000970)) @@ -13508,7 +13498,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15032595"^^xsd:string) o AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0001062 "cell") AnnotationAssertion(rdfs:comment obo:CL_0001062 "This cell type is seen in human but not found in the mouse.") AnnotationAssertion(rdfs:label obo:CL_0001062 "effector memory CD8-positive, alpha-beta T cell, terminally differentiated") -EquivalentClasses(obo:CL_0001062 ObjectIntersectionOf(obo:CL_0000909 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom( obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001017) ObjectSomeValuesFrom( obo:PR_000001203))) +EquivalentClasses(obo:CL_0001062 ObjectIntersectionOf(obo:CL_0000909 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001017) ObjectSomeValuesFrom( obo:PR_000001203))) SubClassOf(obo:CL_0001062 obo:CL_0000909) SubClassOf(obo:CL_0001062 obo:CL_4030002) SubClassOf(obo:CL_0001062 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000913)) @@ -13709,7 +13699,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17465678"^^xsd:string) o AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0001087 "cell") AnnotationAssertion(rdfs:comment obo:CL_0001087 "This cell type is seen in human but not found in the mouse.") AnnotationAssertion(rdfs:label obo:CL_0001087 "effector memory CD4-positive, alpha-beta T cell, terminally differentiated") -EquivalentClasses(obo:CL_0001087 ObjectIntersectionOf(obo:CL_0000897 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom( obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001017) ObjectSomeValuesFrom( obo:PR_000001203))) +EquivalentClasses(obo:CL_0001087 ObjectIntersectionOf(obo:CL_0000897 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001017) ObjectSomeValuesFrom( obo:PR_000001203))) SubClassOf(obo:CL_0001087 obo:CL_0000897) SubClassOf(obo:CL_0001087 obo:CL_4030002) SubClassOf(obo:CL_0001087 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000905)) @@ -13757,7 +13747,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001203 "CD8-positive, alpha AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001203 "CD8-positive, alpha-beta memory T-lymphocyte, CD45RO-positive"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0001203 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0001203 "CD8-positive, alpha-beta memory T cell, CD45RO-positive"^^xsd:string) -EquivalentClasses(obo:CL_0001203 ObjectIntersectionOf(obo:CL_0000909 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606) ObjectSomeValuesFrom( obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001307) ObjectSomeValuesFrom( obo:PR_000001381) ObjectSomeValuesFrom( obo:PR_000001380))) +EquivalentClasses(obo:CL_0001203 ObjectIntersectionOf(obo:CL_0000909 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001307) ObjectSomeValuesFrom( obo:PR_000001381) ObjectSomeValuesFrom( obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001203 obo:CL_0000909) SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) @@ -13769,7 +13759,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001204 "CD4-positive, alpha AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001204 "CD4-positive, alpha-beta memory T-lymphocyte, CD45RO-positive"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0001204 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0001204 "CD4-positive, alpha-beta memory T cell, CD45RO-positive"^^xsd:string) -EquivalentClasses(obo:CL_0001204 ObjectIntersectionOf(obo:CL_0000897 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606) ObjectSomeValuesFrom( obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001307) ObjectSomeValuesFrom( obo:PR_000001381) ObjectSomeValuesFrom( obo:PR_000001380))) +EquivalentClasses(obo:CL_0001204 ObjectIntersectionOf(obo:CL_0000897 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379) ObjectSomeValuesFrom( obo:PR_000001307) ObjectSomeValuesFrom( obo:PR_000001381) ObjectSomeValuesFrom( obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001204 obo:CL_0000897) SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) @@ -14391,7 +14381,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002049 "2010-04-28T02:04:01Z" AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002049 "cell"^^xsd:string) AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0002049 "Fraction C"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002049 "Fraction C precursor B cell"^^xsd:string) -EquivalentClasses(obo:CL_0002049 ObjectIntersectionOf(obo:CL_0002400 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001858) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001859) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003457) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003460) ObjectSomeValuesFrom( obo:GO_0071707))) +EquivalentClasses(obo:CL_0002049 ObjectIntersectionOf(obo:CL_0002400 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001858) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001859) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003457) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003460) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0071707))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002049 obo:CL_0002400) SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002047)) @@ -14431,7 +14421,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm"^^xsd:string) oboInOw AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002052 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0002052 "Fraction D precursor B cells are also reportedly CD24-positive and sIgD-negative."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002052 "Fraction D precursor B cell"^^xsd:string) -EquivalentClasses(obo:CL_0002052 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom( obo:PR_000001879) ObjectSomeValuesFrom( obo:GO_0071708) ObjectSomeValuesFrom( obo:GO_0035369))) +EquivalentClasses(obo:CL_0002052 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom( obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0071708) ObjectSomeValuesFrom( obo:GO_0035369))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002052 obo:CL_0000817) SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002050)) @@ -15319,7 +15309,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002124 "gammadelta27-positi AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002124 "gd27-positive"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002124 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002124 "CD27-positive gamma-delta T cell"^^xsd:string) -EquivalentClasses(obo:CL_0002124 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609) ObjectSomeValuesFrom( obo:GO_0030217))) +EquivalentClasses(obo:CL_0002124 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002124 obo:CL_0000800) SubClassOf(obo:CL_0002124 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002126)) @@ -15331,7 +15321,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002125 "2010-08-18T09:57:29Z" AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21976777"^^xsd:string) oboInOwl:hasExactSynonym obo:CL_0002125 "gammadelta-17 cells"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002125 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002125 "CD27-negative gamma-delta T cell"^^xsd:string) -EquivalentClasses(obo:CL_0002125 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620) ObjectSomeValuesFrom( obo:GO_0030217) ObjectSomeValuesFrom( obo:PR_000001963))) +EquivalentClasses(obo:CL_0002125 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217) ObjectSomeValuesFrom( obo:PR_000001963))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002125 obo:CL_0000800) SubClassOf(obo:CL_0002125 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002126)) @@ -18418,7 +18408,7 @@ AnnotationAssertion(oboInOwl:created_by obo:CL_0002393 "tmeehan"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002393 "2010-10-04T10:52:03Z"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002393 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002393 "intermediate monocyte"^^xsd:string) -EquivalentClasses(obo:CL_0002393 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom( obo:GO_0030224) ObjectSomeValuesFrom( obo:PR_000001002) ObjectSomeValuesFrom( obo:PR_000001020) ObjectSomeValuesFrom( obo:PR_000001199) ObjectSomeValuesFrom( obo:PR_000001289))) +EquivalentClasses(obo:CL_0002393 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030224) ObjectSomeValuesFrom( obo:PR_000001002) ObjectSomeValuesFrom( obo:PR_000001020) ObjectSomeValuesFrom( obo:PR_000001199) ObjectSomeValuesFrom( obo:PR_000001289))) SubClassOf(obo:CL_0002393 obo:CL_0000576) SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000860)) @@ -18705,7 +18695,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002419 "mature T-cell"^^xsd AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002419 "cell"^^xsd:string) AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0002419 "CD3epsilon T cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002419 "mature T cell"^^xsd:string) -EquivalentClasses(obo:CL_0002419 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042101) ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0002419 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042101) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002419 obo:CL_0000084) # Class: obo:CL_0002420 (immature T cell) @@ -18718,7 +18708,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002420 "CALOHA:TS-1042"^^xsd:stri AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002420 "immature T-cell"^^xsd:string) AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002420 "cell"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002420 "immature T cell"^^xsd:string) -EquivalentClasses(obo:CL_0002420 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom( obo:GO_0045058))) +EquivalentClasses(obo:CL_0002420 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002420 obo:CL_0000084) # Class: obo:CL_0002421 (nucleated reticulocyte) @@ -21440,7 +21430,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002678 "2011-08-25T03:17:34Z" AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0002678 "cell"^^xsd:string) AnnotationAssertion(rdfs:comment obo:CL_0002678 "Cell has been described as being CD45RA-positive in human, but this doesn't fit with our current definition memory T cell."^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_0002678 "memory regulatory T cell"^^xsd:string) -EquivalentClasses(obo:CL_0002678 ObjectIntersectionOf(obo:CL_0000792 ObjectSomeValuesFrom( obo:GO_0043379))) +EquivalentClasses(obo:CL_0002678 ObjectIntersectionOf(obo:CL_0000792 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(obo:CL_0002678 obo:CL_0000792) SubClassOf(obo:CL_0002678 obo:CL_0000813)