From 5e640cf7528587b1715edf3d4aa1ed108ce9acb2 Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Mon, 4 Mar 2024 12:08:34 +0000 Subject: [PATCH 1/8] Fixes #2300 New Term Request TAC3-Positive interneurons --- src/ontology/cl-edit.owl | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 55260e24a..217912d73 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3023,6 +3023,7 @@ Declaration(Class(obo:CL_4040002)) Declaration(Class(obo:CL_4040003)) Declaration(Class(obo:CL_4040004)) Declaration(Class(obo:CL_4040005)) +Declaration(Class(obo:CL_4042001)) Declaration(Class(obo:CP_0000000)) Declaration(Class(obo:CP_0000025)) Declaration(Class(obo:CP_0000027)) @@ -31919,6 +31920,15 @@ AnnotationAssertion(rdfs:label obo:CL_4040005 "mesenchymal stem cell of apical p SubClassOf(obo:CL_4040005 obo:CL_0000134) SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003677)) +# Class: obo:CL_4042001 (TAC3-positive interneuron) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:notes obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") +AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive interneuron"@en) +SubClassOf(obo:CL_4042001 obo:CL_0011005) +SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002435)) + # Class: obo:CP_0000000 (obsolete CP:0000000) AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500) From 193c49444a64a55b8596ebfdb317846189b9200e Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Mon, 4 Mar 2024 13:16:10 +0000 Subject: [PATCH 2/8] Update cl-edit.owl --- src/ontology/cl-edit.owl | 1 + 1 file changed, 1 insertion(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 217912d73..3c54be6cb 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31923,6 +31923,7 @@ SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000367 # Class: obo:CL_4042001 (TAC3-positive interneuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") +AnnotationAssertion( obo:CL_4042001 "https://orcid.org/0000-0002-0098-8958") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:notes obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive interneuron"@en) From 92cd092793e0f9ae6234ac9034064165fafc96c6 Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Mon, 4 Mar 2024 13:34:31 +0000 Subject: [PATCH 3/8] Update cl-edit.owl --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 3c54be6cb..4d0e3e962 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31925,7 +31925,7 @@ SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000367 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") AnnotationAssertion( obo:CL_4042001 "https://orcid.org/0000-0002-0098-8958") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:notes obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") rdfs:comment obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive interneuron"@en) SubClassOf(obo:CL_4042001 obo:CL_0011005) SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002435)) From 4063bf44829e3423cda9aa0a41ce67fa4e9f0d24 Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Tue, 5 Mar 2024 14:34:55 +0000 Subject: [PATCH 4/8] Update cl-edit.owl --- src/ontology/cl-edit.owl | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 4d0e3e962..713994d56 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31922,9 +31922,11 @@ SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000367 # Class: obo:CL_4042001 (TAC3-positive interneuron) +AnnotationAssertion(obo:IAO_0000115 obo:CL_4042001 "") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") -AnnotationAssertion( obo:CL_4042001 "https://orcid.org/0000-0002-0098-8958") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") +AnnotationAssertion( obo:CL_4042001 ) +AnnotationAssertion( obo:CL_4042001 "2024-03-05T14:29:32Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "

PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") rdfs:comment obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive interneuron"@en) SubClassOf(obo:CL_4042001 obo:CL_0011005) From 699c3c92aba126ddd31d469ac6d26611dd1ac398 Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Tue, 5 Mar 2024 14:45:27 +0000 Subject: [PATCH 5/8] Update cl-edit.owl --- src/ontology/cl-edit.owl | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 713994d56..a68c65434 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31922,7 +31922,6 @@ SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000367 # Class: obo:CL_4042001 (TAC3-positive interneuron) -AnnotationAssertion(obo:IAO_0000115 obo:CL_4042001 "") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") AnnotationAssertion( obo:CL_4042001 ) AnnotationAssertion( obo:CL_4042001 "2024-03-05T14:29:32Z"^^xsd:dateTime) From 468ea002b1f245aedcefed202de9b929f6e290eb Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Thu, 7 Mar 2024 14:10:12 +0000 Subject: [PATCH 6/8] Update cl-edit.owl --- src/ontology/cl-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index e03aa647b..8b051ce19 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31921,14 +31921,14 @@ AnnotationAssertion(rdfs:label obo:CL_4040005 "mesenchymal stem cell of apical p SubClassOf(obo:CL_4040005 obo:CL_0000134) SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003677)) -# Class: obo:CL_4042001 (TAC3-positive interneuron) +# Class: obo:CL_4042001 (TAC3-positive striatal interneuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") AnnotationAssertion( obo:CL_4042001 ) AnnotationAssertion( obo:CL_4042001 "2024-03-05T14:29:32Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "

PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") rdfs:comment obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") -AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive interneuron"@en) +AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive striatal interneuron"@en) SubClassOf(obo:CL_4042001 obo:CL_0011005) SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002435)) From 82f72ee91f469e5238f78fa541ee24e4f5ffbca3 Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Mon, 25 Mar 2024 11:13:13 +0000 Subject: [PATCH 7/8] update Fixes-2300 --- src/ontology/cl-edit.owl | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 8b051ce19..78e269404 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31923,14 +31923,15 @@ SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000367 # Class: obo:CL_4042001 (TAC3-positive striatal interneuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma in the striatum and that has an enriched expression of the gene TAC3.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma located in the striatum and that has an enriched expression of the gene TAC3.") AnnotationAssertion( obo:CL_4042001 ) AnnotationAssertion( obo:CL_4042001 "2024-03-05T14:29:32Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "

PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") rdfs:comment obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive striatal interneuron"@en) SubClassOf(obo:CL_4042001 obo:CL_0011005) -SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002435)) +SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002435)) +SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016004)) # Class: obo:CP_0000000 (obsolete CP:0000000) From 89dfc99334c3264ce6b6ef849ab13612becc5b11 Mon Sep 17 00:00:00 2001 From: AvolaAmg Date: Mon, 25 Mar 2024 14:30:29 +0000 Subject: [PATCH 8/8] New Term Request TAC3-Positive interneurons --- src/ontology/cl-edit.owl | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 78e269404..0e0f7c650 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31923,11 +31923,10 @@ SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000367 # Class: obo:CL_4042001 (TAC3-positive striatal interneuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma located in the striatum and that has an enriched expression of the gene TAC3.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") Annotation(oboInOwl:hasDbXref "PMID:32999462") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma located in the striatum and that has an enriched expression of the gene TAC3.") AnnotationAssertion( obo:CL_4042001 ) AnnotationAssertion( obo:CL_4042001 "2024-03-05T14:29:32Z"^^xsd:dateTime) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "

PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron
") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") rdfs:comment obo:CL_4042001 "In Human, Rhesus Macaque, and Marmoset, TAC3-positive interneuron has its soma in the striatum.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron") AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive striatal interneuron"@en) SubClassOf(obo:CL_4042001 obo:CL_0011005) SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002435))