From 6897f12ceb4c1fad29c2447158d36ab3a8bf208b Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Tue, 9 Apr 2024 12:12:48 +0100 Subject: [PATCH 1/7] NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes Fixes #2320 #2321 #2322 #2328 --- src/ontology/cl-edit.owl | 49 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 49 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index ff8a14332..72f668f99 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3030,6 +3030,11 @@ Declaration(Class(obo:CL_4042003)) Declaration(Class(obo:CL_4042004)) Declaration(Class(obo:CL_4042005)) Declaration(Class(obo:CL_4042006)) +Declaration(Class(obo:CL_4042007)) +Declaration(Class(obo:CL_4042008)) +Declaration(Class(obo:CL_4042009)) +Declaration(Class(obo:CL_4042010)) +Declaration(Class(obo:CL_4042011)) Declaration(Class(obo:CP_0000000)) Declaration(Class(obo:CP_0000025)) Declaration(Class(obo:CP_0000027)) @@ -32019,6 +32024,50 @@ AnnotationAssertion(rdfs:label obo:CL_4042006 "dural macrophage"@en) SubClassOf(obo:CL_4042006 obo:CL_4042003) SubClassOf(obo:CL_4042006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002092)) +# Class: obo:CL_4042007 (protoplasmic astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte cell that has highly branched protrusions, its soma is part of a neocortex and it is found between layer 2 and 6. A protoplasmic astrocyte is involved in the formation and elimination of synapses, in the clearance of glutamate, in the modulation of synaptic functions and in the regulation of blood flow in response to synaptic activity.") +AnnotationAssertion( obo:CL_4042007 ) +AnnotationAssertion( obo:CL_4042007 "2024-04-08T16:01:24Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") oboInOwl:hasDbXref obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100.000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") +AnnotationAssertion(rdfs:label obo:CL_4042007 "protoplasmic astrocyte"@en) +SubClassOf(obo:CL_4042007 obo:CL_0002605) + +# Class: obo:CL_4042008 (fibrous astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") obo:IAO_0000115 obo:CL_4042008 "An astrocyte cell with long fiber-like processes, the soma of this astrocyte is part of a white matter, its soma and processes are oriented along the white matter tracts. This astrocyte type has several contacts with the vasculature of a nervous system and is involved in metabolic support.") +AnnotationAssertion( obo:CL_4042008 ) +AnnotationAssertion( obo:CL_4042008 "2024-04-08T16:29:28Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28280934") rdfs:comment obo:CL_4042008 "In humans, a fibrous astrocyte diameter is circa 182 µm. In rodents, a fibrous astrocyte diameter is circa 85 µm.") +AnnotationAssertion(rdfs:label obo:CL_4042008 "fibrous astrocyte"@en) +SubClassOf(obo:CL_4042008 obo:CL_0000127) +SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002316)) + +# Class: obo:CL_4042009 (interlaminar astrocyte) + +AnnotationAssertion( obo:CL_4042009 ) +AnnotationAssertion( obo:CL_4042009 "2024-04-08T16:33:45Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042009 "ILA") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") rdfs:comment obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, a pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.") +AnnotationAssertion(rdfs:label obo:CL_4042009 "interlaminar astrocyte"@en) +SubClassOf(obo:CL_4042009 obo:CL_0002605) + +# Class: obo:CL_4042010 (pial interlaminar astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042010 "An interlaminar astrocyte whose soma is part of the first layer of a neocortex and is in contact with a pia surface.") +AnnotationAssertion( obo:CL_4042010 ) +AnnotationAssertion( obo:CL_4042010 "2024-04-08T16:37:57Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4042010 "pial interlaminar astrocyte"@en) +SubClassOf(obo:CL_4042010 obo:CL_4042009) + +# Class: obo:CL_4042011 (subpial Interlaminar astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042011 "An interlaminar astrocyte type whose soma is part of the upper first layer of the neocortex and its processes extend to a pia surface.") +AnnotationAssertion( obo:CL_4042011 ) +AnnotationAssertion( obo:CL_4042011 "2024-04-08T16:39:09Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4042011 "subpial Interlaminar astrocyte"@en) +SubClassOf(obo:CL_4042011 obo:CL_4042009) + # Class: obo:CP_0000000 (obsolete CP:0000000) AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500) From 7881c809a063ecd4ef5bdc13891c4b3104dbaca7 Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Tue, 9 Apr 2024 12:24:08 +0100 Subject: [PATCH 2/7] Update cl-edit.owl --- src/ontology/cl-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 72f668f99..8c4ec3c17 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32029,7 +32029,7 @@ SubClassOf(obo:CL_4042006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000209 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte cell that has highly branched protrusions, its soma is part of a neocortex and it is found between layer 2 and 6. A protoplasmic astrocyte is involved in the formation and elimination of synapses, in the clearance of glutamate, in the modulation of synaptic functions and in the regulation of blood flow in response to synaptic activity.") AnnotationAssertion( obo:CL_4042007 ) AnnotationAssertion( obo:CL_4042007 "2024-04-08T16:01:24Z"^^xsd:dateTime) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") oboInOwl:hasDbXref obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100.000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100.000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") AnnotationAssertion(rdfs:label obo:CL_4042007 "protoplasmic astrocyte"@en) SubClassOf(obo:CL_4042007 obo:CL_0002605) @@ -32045,10 +32045,10 @@ SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000231 # Class: obo:CL_4042009 (interlaminar astrocyte) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, a pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.") AnnotationAssertion( obo:CL_4042009 ) AnnotationAssertion( obo:CL_4042009 "2024-04-08T16:33:45Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042009 "ILA") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") rdfs:comment obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, a pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.") AnnotationAssertion(rdfs:label obo:CL_4042009 "interlaminar astrocyte"@en) SubClassOf(obo:CL_4042009 obo:CL_0002605) From 16fb9517e5742ed4adcad8277827fc8fdcbf4fd1 Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Tue, 9 Apr 2024 12:24:47 +0100 Subject: [PATCH 3/7] Update cl-edit.owl --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 8c4ec3c17..5367a1620 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32029,7 +32029,7 @@ SubClassOf(obo:CL_4042006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000209 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte cell that has highly branched protrusions, its soma is part of a neocortex and it is found between layer 2 and 6. A protoplasmic astrocyte is involved in the formation and elimination of synapses, in the clearance of glutamate, in the modulation of synaptic functions and in the regulation of blood flow in response to synaptic activity.") AnnotationAssertion( obo:CL_4042007 ) AnnotationAssertion( obo:CL_4042007 "2024-04-08T16:01:24Z"^^xsd:dateTime) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100.000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100,000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") AnnotationAssertion(rdfs:label obo:CL_4042007 "protoplasmic astrocyte"@en) SubClassOf(obo:CL_4042007 obo:CL_0002605) From b810a7b3d3ef647940658d28fc3a929fdea733da Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Tue, 9 Apr 2024 12:28:38 +0100 Subject: [PATCH 4/7] Update cl-edit.owl --- src/ontology/cl-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 5367a1620..ce27a77a3 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32035,7 +32035,7 @@ SubClassOf(obo:CL_4042007 obo:CL_0002605) # Class: obo:CL_4042008 (fibrous astrocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") obo:IAO_0000115 obo:CL_4042008 "An astrocyte cell with long fiber-like processes, the soma of this astrocyte is part of a white matter, its soma and processes are oriented along the white matter tracts. This astrocyte type has several contacts with the vasculature of a nervous system and is involved in metabolic support.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") obo:IAO_0000115 obo:CL_4042008 "An astrocyte cell with long fiber-like processes with a soma in the white matter and processes are oriented along the white matter tracts part of a white matter. This astrocyte type has several contacts with the vasculature of a nervous system and is involved in metabolic support.") AnnotationAssertion( obo:CL_4042008 ) AnnotationAssertion( obo:CL_4042008 "2024-04-08T16:29:28Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28280934") rdfs:comment obo:CL_4042008 "In humans, a fibrous astrocyte diameter is circa 182 µm. In rodents, a fibrous astrocyte diameter is circa 85 µm.") @@ -32045,7 +32045,7 @@ SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000231 # Class: obo:CL_4042009 (interlaminar astrocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, a pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, the pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.") AnnotationAssertion( obo:CL_4042009 ) AnnotationAssertion( obo:CL_4042009 "2024-04-08T16:33:45Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042009 "ILA") From e3ed1ead6a2e9a243844c051f3ea0fbfed593d23 Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Tue, 9 Apr 2024 12:47:18 +0100 Subject: [PATCH 5/7] Update cl-edit.owl --- src/ontology/cl-edit.owl | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index ce27a77a3..bf27b8605 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32032,6 +32032,8 @@ AnnotationAssertion( obo:CL_4042007 "2024-04-08T1 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100,000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") AnnotationAssertion(rdfs:label obo:CL_4042007 "protoplasmic astrocyte"@en) SubClassOf(obo:CL_4042007 obo:CL_0002605) +SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001950)) +SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950)) # Class: obo:CL_4042008 (fibrous astrocyte) @@ -32042,6 +32044,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28280934") rdfs:comment AnnotationAssertion(rdfs:label obo:CL_4042008 "fibrous astrocyte"@en) SubClassOf(obo:CL_4042008 obo:CL_0000127) SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002316)) +SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002316)) # Class: obo:CL_4042009 (interlaminar astrocyte) @@ -32051,6 +32054,8 @@ AnnotationAssertion( obo:CL_4042009 "2024-04-08T1 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042009 "ILA") AnnotationAssertion(rdfs:label obo:CL_4042009 "interlaminar astrocyte"@en) SubClassOf(obo:CL_4042009 obo:CL_0002605) +SubClassOf(obo:CL_4042009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001950)) +SubClassOf(obo:CL_4042009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950)) # Class: obo:CL_4042010 (pial interlaminar astrocyte) From f800b3821a8aa764b1c648d0301ecf1a0fe671d0 Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Tue, 9 Apr 2024 12:57:22 +0100 Subject: [PATCH 6/7] Update cl-edit.owl --- src/ontology/cl-edit.owl | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index bf27b8605..afad08371 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32065,13 +32065,14 @@ AnnotationAssertion( obo:CL_4042010 "2024-04-08T1 AnnotationAssertion(rdfs:label obo:CL_4042010 "pial interlaminar astrocyte"@en) SubClassOf(obo:CL_4042010 obo:CL_4042009) -# Class: obo:CL_4042011 (subpial Interlaminar astrocyte) +# Class: obo:CL_4042011 (subpial interlaminar astrocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042011 "An interlaminar astrocyte type whose soma is part of the upper first layer of the neocortex and its processes extend to a pia surface.") AnnotationAssertion( obo:CL_4042011 ) AnnotationAssertion( obo:CL_4042011 "2024-04-08T16:39:09Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:CL_4042011 "subpial Interlaminar astrocyte"@en) +AnnotationAssertion(rdfs:label obo:CL_4042011 "subpial interlaminar astrocyte"@en) SubClassOf(obo:CL_4042011 obo:CL_4042009) +SubClassOf(obo:CL_4042011 ObjectSomeValuesFrom(obo:RO_0002170 obo:UBERON_0002361)) # Class: obo:CP_0000000 (obsolete CP:0000000) From 26692f2422fa984acad5d6be3743ecf1d6744449 Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Mon, 15 Apr 2024 10:19:33 +0100 Subject: [PATCH 7/7] Update cl-edit.owl --- src/ontology/cl-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index afad08371..3117babed 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -32026,7 +32026,7 @@ SubClassOf(obo:CL_4042006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000209 # Class: obo:CL_4042007 (protoplasmic astrocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte cell that has highly branched protrusions, its soma is part of a neocortex and it is found between layer 2 and 6. A protoplasmic astrocyte is involved in the formation and elimination of synapses, in the clearance of glutamate, in the modulation of synaptic functions and in the regulation of blood flow in response to synaptic activity.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte with highly branched protrusions, found in neocortex layers 2-6. It is involved with the formation and elimination of synapses, glutamate clearance, modulation of synaptic functions and regulation of blood flow in response to synaptic activity.") AnnotationAssertion( obo:CL_4042007 ) AnnotationAssertion( obo:CL_4042007 "2024-04-08T16:01:24Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100,000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") @@ -32037,7 +32037,7 @@ SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950 # Class: obo:CL_4042008 (fibrous astrocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") obo:IAO_0000115 obo:CL_4042008 "An astrocyte cell with long fiber-like processes with a soma in the white matter and processes are oriented along the white matter tracts part of a white matter. This astrocyte type has several contacts with the vasculature of a nervous system and is involved in metabolic support.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") obo:IAO_0000115 obo:CL_4042008 "A cell type located in the first layer of the neocortex with radial protrusions extending transversely into the deeper cortex layers, herby facilitating communication across neurons, astrocytes, capillaries, meninges and cerebrospinal fluid through contact with neurons, pia mater and capillaries.") AnnotationAssertion( obo:CL_4042008 ) AnnotationAssertion( obo:CL_4042008 "2024-04-08T16:29:28Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28280934") rdfs:comment obo:CL_4042008 "In humans, a fibrous astrocyte diameter is circa 182 µm. In rodents, a fibrous astrocyte diameter is circa 85 µm.")