From 64b5e7b035fded4d292ea715a1c7066597110bc8 Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Tue, 17 Dec 2024 16:46:58 +0000 Subject: [PATCH 1/2] Fixes #2749 Fixes #2749 - Added a new term with textual/logical defs and refs --- src/ontology/cl-edit.owl | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 7edb00cd8..f8c871fec 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3134,6 +3134,7 @@ Declaration(Class(obo:CL_4052025)) Declaration(Class(obo:CL_4052026)) Declaration(Class(obo:CL_4052027)) Declaration(Class(obo:CL_4052028)) +Declaration(Class(obo:CL_4052030)) Declaration(Class(obo:CL_4052048)) Declaration(Class(obo:CL_4052049)) Declaration(Class(obo:CP_0000000)) @@ -33337,6 +33338,18 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39198675") Annotation(ob AnnotationAssertion(rdfs:label obo:CL_4052028 "uterine natural killer cell") EquivalentClasses(obo:CL_4052028 ObjectIntersectionOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995))) +# Class: obo:CL_4052030 (respiratory airway secretory cell) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35355013") Annotation(oboInOwl:hasDbXref "PMID:36796082") obo:IAO_0000115 obo:CL_4052030 "A secretory epithelial cell of the respiratory and terminal bronchioles.") +AnnotationAssertion(terms:contributor obo:CL_4052030 ) +AnnotationAssertion(terms:date obo:CL_4052030 "2024-11-29T16:14:31Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36796082") Annotation(oboInOwl:hasRelatedSynonym obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4052030 "RAS cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35355018") oboInOwl:hasRelatedSynonym obo:CL_4052030 "terminal and respiratory bronchioles secretory cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35355013") Annotation(oboInOwl:hasDbXref "PMID:36796082") rdfs:comment obo:CL_4052030 "The respiratory airway secretory cell is cuboidal and has a unique transcriptomic profile compared to other epithelial cells in the same region. In humans, it functions as a multipotent progenitor, capable of regenerating alveolar type 2 (AT2) cells.") +AnnotationAssertion(rdfs:label obo:CL_4052030 "respiratory airway secretory cell") +SubClassOf(obo:CL_4052030 obo:CL_1100001) +SubClassOf(obo:CL_4052030 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002051)) + # Class: obo:CL_4052048 (intercalated cell of salivary gland) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30855909") Annotation(oboInOwl:hasDbXref "PMID:35799078") Annotation(oboInOwl:hasDbXref "PMID:36726292") Annotation(oboInOwl:hasDbXref "PMID:37724716") obo:IAO_0000115 obo:CL_4052048 "A cuboidal epithelial cell that is part of the intercalated duct of salivary gland. This cell expresses proteins commonly associated with acinar cells and displays calcium signaling characteristics similar to secretory cells, indicating an active role in the secretory process rather than ion reabsorption.") From 58b34d45f456492d48d239214b12a456f3baf666 Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Tue, 17 Dec 2024 17:00:37 +0000 Subject: [PATCH 2/2] Update cl-edit.owl --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 180f896b8..ea61001bd 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -45,7 +45,7 @@ Annotation(terms:contributor ) Annotation(terms:contributor ) Annotation(terms:contributor ) Annotation(terms:license ) -Annotation(rdfs:comment "See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl"@buffalo.edu, university at buffalo.) +Annotation(rdfs:comment "See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, university at buffalo.") Declaration(Class(obo:CL_0000000)) Declaration(Class(obo:CL_0000001))