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Wikipedia reference serialized incorrectly in OBO #9

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cthoyt opened this issue Nov 23, 2024 · 0 comments
Open

Wikipedia reference serialized incorrectly in OBO #9

cthoyt opened this issue Nov 23, 2024 · 0 comments

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@cthoyt
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cthoyt commented Nov 23, 2024

The following see also reference to a wikipedia URL gets serialized to OBO in a weird way -> to Nidamental:gland, which looks like a CURIE but is not.

AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/CEPH_0000175> <http://en.wikipedia.org/wiki/Nidamental_gland>)

cephalopod-ontology/ceph.obo

Lines 1037 to 1044 in 1d666ed

[Term]
id: CEPH:0000175
name: nidamental gland
def: "Large glandular structures found in decapodiforms and Nautilus that lie in and open directly into the mantle cavity. The glands are composed of numerous lamellae that are involved in secretion of egg cases or the jelly of egg masses." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587]
is_a: UBERON:0002530 ! gland
relationship: RO:0001025 UBERON:0006580 ! located in mantle cavity
property_value: seeAlso Nidamental:gland

full OWL context for this declaration:

Declaration(Class(<http://purl.obolibrary.org/obo/CEPH_0000175>))
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CEPH_0000175> "nidamental gland"^^xsd:string)
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/CEPH_0000175> <http://en.wikipedia.org/wiki/Nidamental_gland>)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CEPH_0000175> "Large glandular structures found in decapodiforms and Nautilus that lie in and open directly into the mantle cavity. The glands are composed of numerous lamellae that are involved in secretion of egg cases or the jelly of egg masses."^^xsd:string)
SubClassOf(<http://purl.obolibrary.org/obo/CEPH_0000175> <http://purl.obolibrary.org/obo/UBERON_0002530>)
SubClassOf(<http://purl.obolibrary.org/obo/CEPH_0000175> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0001025> <http://purl.obolibrary.org/obo/UBERON_0006580>))

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