.gitignore

.DS_Store
.project
*.swp
*.tmp
*.tmp.obo
*.tmp.owl
*.obda
*.properties
~*
/owltools_folder/
src/ontology/subsets/
bin/
hp-simple-non-classified.*
semantic.cache
src/ontology/*test.owl
src/ontology/apache-jena-3.1.1.zip
src/ontology/apache-jena-3.1.1
src/ontology/assert-equivalent-classes-module.owl
src/ontology/assert-equivalent-classes-module.owl
src/ontology/assert-unsatisfiable-module.owl
src/ontology/build.sh
src/ontology/build/
src/ontology/dosdp-tools.log
src/ontology/hp-base.*
src/ontology/hp-full.*
src/ontology/hp-inferred.*
src/ontology/hp-simple-non-classified.*
src/ontology/hp.json
src/ontology/hp.obo
src/ontology/hp.obo.tmp
src/ontology/hp.owl
src/ontology/imports/*_terms_combined.txt
src/ontology/mirror
src/ontology/mirror/*
src/ontology/patterns
src/ontology/reports/xref-syntax-violation.csv
src/ontology/seed.txt
src/ontology/target/
src/ontology/tmp/
src/patterns/imports/seed_sorted.txt
src/ontology/Dockerfile
src/ontology/patterns.sh
src/patterns/data/default/*.ofn
src/patterns/data/default/*.txt
src/patterns/data/full/*.ofn
src/patterns/data/full/*.txt
src/ontology/patternised_classes.txt
src/ontology/hp_report
/reports/
src/ontology/reports/hp-edit.owl-obo-report.tsv
src/ontology/archive/default-catalog.xml
src/ontology/reports/basic-report.tsv
src/ontology/reports/class-count-by-prefix.tsv
src/ontology/reports/edges.tsv
src/ontology/reports/obsoletes.tsv
src/ontology/reports/synonyms.tsv
src/ontology/reports/xrefs.tsv
src/ontology/imports/*json
src/ontology/imports/*obo
src/patterns/all_pattern_terms.txt
src/patterns/data/full/README.md
src/patterns/data/default/README.md
src/ontology/reports/README.md
src/ontology/ontologyterms.txt
src/ontology/reports/equivalent-classes-violation.csv
src/ontology/reports/hp.owl-obo-report.tsv
src/metadata
.travis.yml
src/ontology/reports/layperson-synonyms.tsv
src/ontology/reports/validate_profile_owl2dl_hp.owl.txt
src/ontology/.cogs
src/ontology/reports/count-all.tsv
src/ontology/reports/count-phenotypes.tsv
src/ontology/reports/count-synonyms.tsv
src/ontology/reports/deprecated_class_reference-violation.csv
src/ontology/reports/synonym_ends_with_illegal_character-violation.csv
src/patterns/data/matches/*.ofn
src/ontology/reports/diff-international.txt
src/ontology/hp-international.owl
src/patterns/data/matches/*.ofn
hp-base.obo
hp-base.json
hp-full.*
hp-inferred.*
hp-simple-non-classified.*
hp-international.*
hp.json
hp.owl
src/ontology/reports/orcid-xref-is-not-formatted-correctly-violation.csv
src/ontology/reports/xref-uses-unknown-prefix-violation.csv
src/ontology/translations/hp-nna.owl
src/ontology/behaviour_seed.txt
site/*
docs/cite.md
docs/contributing.md
src/ontology/reports/missing-parent-hpo-violation.csv
src/translations/hp-dtp-not-translated.babelon.tsv
src/translations/hp-nna-not-translated.babelon.tsv
src/translations/hp-tw-not-translated.babelon.tsv
hp-fr.obo
hp-fr.json
hp-fr.owl
src/ontology/imports/.Rhistory
src/ontology/reports/hpodiff_hp_2022-12-15_to_hp_2022-12-15.xlsx
src/ontology/reports/hpodiff_hp_2022-12-15_to_hp_2023-01-20.xlsx
src/ontology/reports/hpodiff_hp_2023-01-27_to_hp_2023-03-31.xlsx
src/ontology/reports/hpodiff_hp_2023-04-05_to_hp_2023-06-05.xlsx
src/ontology/reports/hpodiff_hp_2023-06-06_to_hp_2023-06-16.xlsx
src/ontology/reports/hpodiff_hp_2023-06-17_to_hp_2023-07-20.xlsx
src/ontology/reports/hpodiff_hp_2023-06-17_to_hp_2023-07-21.xlsx
src/ontology/reports/hpodiff_hp_2024-04-19_to_hp_2024-04-24.xlsx
src/ontology/reports/hpodiff_hp_2024-04-26_to_hp_2024-05-10.xlsx
src/ontology/reports/hpodiff_hp_2024-06-25_to_hp_2024-06-28.xlsx