From 6a633fb38426bd274b928af3f7e36633fe757ad5 Mon Sep 17 00:00:00 2001
From: Jim Balhoff <jim@balhoff.org>
Date: Wed, 16 Nov 2022 17:30:34 -0500
Subject: [PATCH 1/2] Map relations to RO ids to be used in OWL translation.

---
 src/ontology/catalog-v001.xml |  1 +
 src/ontology/emapa-edit.obo   | 10 +++++++++-
 2 files changed, 10 insertions(+), 1 deletion(-)

diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
index 78d46fc..e2c0406 100644
--- a/src/ontology/catalog-v001.xml
+++ b/src/ontology/catalog-v001.xml
@@ -1,5 +1,6 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/ro/releases/2022-10-26/ro.owl" uri="http://purl.obolibrary.org/obo/ro.owl"/>
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/emapa/imports/ro_import.owl" uri="imports/ro_import.owl"/>
     <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base=""/>
 </catalog>
diff --git a/src/ontology/emapa-edit.obo b/src/ontology/emapa-edit.obo
index 6905960..7095deb 100644
--- a/src/ontology/emapa-edit.obo
+++ b/src/ontology/emapa-edit.obo
@@ -70445,40 +70445,48 @@ is_a: TS:0 ! Theiler stage
 [Typedef]
 id: attached_to
 name: attached_to
+xref: RO:0002371
 
 [Typedef]
 id: develops_from
 name: develops_from
 is_transitive: true
+xref: RO:0002202
 
 [Typedef]
 id: develops_in
 name: develops_in
+xref: RO:0002226
 
 [Typedef]
 id: ends_at
 name: ends_at
+xref: RO:0002493
 
 [Typedef]
 id: has_part
 name: has_part
 is_transitive: true
+xref: BFO:0000051
 
 [Typedef]
 id: is_a
 name: is_a
 is_transitive: true
+builtin: true
 
 [Typedef]
 id: located_in
 name: located_in
+xref: RO:0001025
 
 [Typedef]
 id: part_of
 name: part_of
 is_transitive: true
+xref: BFO:0000050
 
 [Typedef]
 id: starts_at
 name: starts_at
-
+xref: RO:0002489

From ae2a50c332f48de0edbfe08e72710dc96f9a584b Mon Sep 17 00:00:00 2001
From: Jim Balhoff <balhoff@gmail.com>
Date: Wed, 16 Nov 2022 17:32:47 -0500
Subject: [PATCH 2/2] Update catalog-v001.xml

---
 src/ontology/catalog-v001.xml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
index e2c0406..78d46fc 100644
--- a/src/ontology/catalog-v001.xml
+++ b/src/ontology/catalog-v001.xml
@@ -1,6 +1,5 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
-    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/ro/releases/2022-10-26/ro.owl" uri="http://purl.obolibrary.org/obo/ro.owl"/>
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/emapa/imports/ro_import.owl" uri="imports/ro_import.owl"/>
     <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base=""/>
 </catalog>