diff --git a/src/mappings/biomappings.sssom.tsv b/src/mappings/biomappings.sssom.tsv index 7d2772cf9..3ff7de99e 100644 --- a/src/mappings/biomappings.sssom.tsv +++ b/src/mappings/biomappings.sssom.tsv @@ -1,24 +1,26 @@ #curie_map: -# BTO: http://purl.obolibrary.org/obo/BTO_ -# IDOMAL: http://purl.obolibrary.org/obo/IDOMAL_ -# UBERON: http://purl.obolibrary.org/obo/UBERON_ -# VO: http://purl.obolibrary.org/obo/VO_ -# mesh: http://id.nlm.nih.gov/mesh/ -# orcid: https://orcid.org/ -#mapping_set_id: https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv -#mapping_set_version: 0.3.8.dev0 -#mapping_set_title: Biomappings -#mapping_set_description: Biomappings is a repository of community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources. It's also a place where anyone can contribute curations of predicted mappings or their own novel mappings. +# BTO: "http://purl.obolibrary.org/obo/BTO_" +# IDOMAL: "http://purl.obolibrary.org/obo/IDOMAL_" +# UBERON: "http://purl.obolibrary.org/obo/UBERON_" +# VO: "http://purl.obolibrary.org/obo/VO_" +# mesh: "http://id.nlm.nih.gov/mesh/" +# obo: "http://purl.obolibrary.org/obo/" +# orcid: "https://orcid.org/" +#mapping_set_id: "https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv" +#mapping_set_version: "0.3.8.dev0" +#mapping_set_title: "Biomappings" +#mapping_set_description: "Biomappings is a repository of community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources. It's also a place where anyone can contribute curations of predicted mappings or their own novel mappings." #creator_id: -# - orcid:0000-0001-9439-5346 -# - orcid:0000-0002-1216-4761 -# - orcid:0000-0002-2046-6145 -# - orcid:0000-0002-2627-0696 -# - orcid:0000-0002-6601-2165 -# - orcid:0000-0003-1307-2508 -# - orcid:0000-0003-4423-4370 -#license: https://creativecommons.org/publicdomain/zero/1.0/ -#mapping_provider: https://github.com/biopragmatics/biomappings +# - "orcid:0000-0001-9439-5346" +# - "orcid:0000-0002-1216-4761" +# - "orcid:0000-0002-2046-6145" +# - "orcid:0000-0002-2627-0696" +# - "orcid:0000-0002-6601-2165" +# - "orcid:0000-0003-1307-2508" +# - "orcid:0000-0003-4423-4370" +#license: "https://creativecommons.org/publicdomain/zero/1.0/" +#subject_source: "obo:uberon/core.owl" +#mapping_provider: "https://github.com/biopragmatics/biomappings" subject_id subject_label predicate_id predicate_modifier object_id object_label mapping_justification author_id mapping_tool confidence UBERON:0000016 endocrine pancreas skos:exactMatch mesh:D007515 Islets of Langerhans semapv:LexicalMatching generate_uberon_mesh_mappings.py 0.9 UBERON:0000017 exocrine pancreas skos:exactMatch mesh:D046790 Pancreas, Exocrine semapv:ManualMappingCuration orcid:0000-0001-9439-5346 @@ -286,8 +288,6 @@ UBERON:2001553 manubrium skos:exactMatch mesh:D008371 Manubrium semapv:ManualMa UBERON:2001977 pad skos:exactMatch Not mesh:D058729 Peripheral Arterial Disease semapv:ManualMappingCuration orcid:0000-0001-9439-5346 UBERON:3010463 animal cap skos:exactMatch BTO:0004724 animal cap semapv:ManualMappingCuration orcid:0000-0003-4423-4370 generate_uberon_bto_mappings.py 0.9 UBERON:3010586 vasa efferentia skos:exactMatch BTO:0002254 vas efferens semapv:ManualMappingCuration orcid:0000-0003-4423-4370 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 -UBERON:3011045 gasserian ganglion skos:exactMatch mesh:D012668 Trigeminal Ganglion semapv:LexicalMatching generate_uberon_mesh_mappings.py 0.9 -UBERON:3011048 genital system skos:exactMatch mesh:D005835 Genitalia semapv:LexicalMatching generate_uberon_mesh_mappings.py 0.9 UBERON:4000104 ganoine skos:exactMatch mesh:C067951 ganoine semapv:ManualMappingCuration orcid:0000-0001-9439-5346 UBERON:4000163 anal fin skos:exactMatch BTO:0004652 anal fin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 generate_uberon_bto_mappings.py 0.9 UBERON:4000164 caudal fin skos:exactMatch BTO:0001827 tail fin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556 diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index 32f505ef2..67f075b15 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -1,17 +1,17 @@ #curie_map: -# FBbt: http://purl.obolibrary.org/obo/FBbt_ -# ORCID: https://orcid.org/ -# UBERON: http://purl.obolibrary.org/obo/UBERON_ -# obo: http://purl.obolibrary.org/obo/ -#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv -#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies. +# FBbt: "http://purl.obolibrary.org/obo/FBbt_" +# ORCID: "https://orcid.org/" +# UBERON: "http://purl.obolibrary.org/obo/UBERON_" +# obo: "http://purl.obolibrary.org/obo/" +#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv" +#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies." #creator_id: -# - ORCID:0000-0002-1373-1705 -# - ORCID:0000-0002-6095-8718 -#license: https://creativecommons.org/licenses/by/4.0/ -#subject_source: obo:fbbt.owl -#object_source: obo:uberon.owl -#mapping_date: 2024-07-12 +# - "ORCID:0000-0002-1373-1705" +# - "ORCID:0000-0002-6095-8718" +#license: "https://creativecommons.org/licenses/by/4.0/" +#subject_source: "obo:fbbt.owl" +#object_source: "obo:uberon/core.owl" +#mapping_date: "2024-07-12" subject_id subject_label predicate_id object_id object_label mapping_justification comment FBbt:00000001 organism semapv:crossSpeciesExactMatch UBERON:0000468 multicellular organism semapv:ManualMappingCuration FBbt:00000002 tagma semapv:crossSpeciesExactMatch UBERON:6000002 arthropod tagma semapv:ManualMappingCuration diff --git a/src/ontology/components/hra_subset.owl b/src/ontology/components/hra_subset.owl index b3a5e453b..9a9bc198d 100644 --- a/src/ontology/components/hra_subset.owl +++ b/src/ontology/components/hra_subset.owl @@ -208,6 +208,15 @@ + + + + + + + + + @@ -289,6 +298,15 @@ + + + + + + + + + @@ -631,6 +649,15 @@ + + + + + + + + + @@ -883,6 +910,15 @@ + + + + + + + + + @@ -901,6 +937,24 @@ + + + + + + + + + + + + + + + + + + @@ -910,6 +964,15 @@ + + + + + + + + + @@ -2530,6 +2593,15 @@ + + + + + + + + + @@ -3988,6 +4060,24 @@ + + + + + + + + + + + + + + + + + + @@ -4213,6 +4303,33 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -5131,6 +5248,15 @@ + + + + + + + + + @@ -5644,6 +5770,15 @@ + + + + + + + + + @@ -7228,6 +7363,15 @@ + + + + + + + + + @@ -7246,6 +7390,15 @@ + + + + + + + + + @@ -7597,6 +7750,15 @@ + + + + + + + + + @@ -8299,6 +8461,15 @@ + + + + + + + + + @@ -8920,15 +9091,6 @@ - - - - - - - - - @@ -10459,6 +10621,15 @@ + + + + + + + + + @@ -11629,6 +11800,15 @@ + + + + + + + + + @@ -14698,6 +14878,15 @@ + + + + + + + + + @@ -14995,6 +15184,15 @@ + + + + + + + + + diff --git a/src/ontology/imports/cl_terms.txt b/src/ontology/imports/cl_terms.txt index 964b7b849..8816c4234 100644 --- a/src/ontology/imports/cl_terms.txt +++ b/src/ontology/imports/cl_terms.txt @@ -3,4 +3,5 @@ CL:0002208 CL:0002329 CL:0011103 CL:0017000 +CL:4023161 diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 13a3aaad0..a578df360 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-11-25") + +Annotation(owl:versionInfo "2024-12-17") Declaration(Class()) Declaration(Class()) @@ -1225,7 +1225,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2311,6 +2310,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9977,6 +9977,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10500,6 +10504,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12510,6 +12515,7 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -13037,7 +13043,7 @@ AnnotationAssertion(rdfs:label "has_broad_synonym") AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") -# Annotation Property: (database_cross_reference) +# Annotation Property: (has cross-reference) AnnotationAssertion( "disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) \"NCIT:C41009\"^^xsd:string") AnnotationAssertion( "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.") @@ -33831,12 +33837,6 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (neuronal brush cell) - -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "neuronal brush cell") -SubClassOf( ) - # Class: (megakaryocyte) AnnotationAssertion(Annotation( "ISBN:0721601464") Annotation( "MESH:D008533") Annotation( "PMID:31043076") Annotation( "http://en.wikipedia.org/wiki/Megakaryocyte") "A large hematopoietic cell (50 to 100 micron) with a lobated nucleus. Once mature, this cell undergoes multiple rounds of endomitosis and cytoplasmic restructuring to allow platelet formation and release.") @@ -47328,6 +47328,16 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (unipolar brush cell) + +AnnotationAssertion(Annotation( "PMID:9193142") Annotation( "WikipediaVersioned:Unipolar_brush_cell&oldid=1045937026") "An excitatory glutamatergic interneuron found in the granular layer of the cerebellar cortex and also in the granule cell domain of the cochlear nucleus. Unipolar brush cells have a round or oval cell body with usually a single short dendrite that ends in a brush-like tuft of short dendrites unique to them known as dendrioles.") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "unipolar brush cell") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (somatosensory neuron) AnnotationAssertion(Annotation( "PMID:22865660") "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.") @@ -144882,6 +144892,7 @@ SubClassOf( (Saccharomycotina) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:38895705") AnnotationAssertion(Annotation( ) "true yeasts") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:147537") @@ -145042,9 +145053,7 @@ AnnotationAssertion(Annotation( "NCBITaxon:1549675") AnnotationAssertion(rdfs:label "Galloanserae") SubClassOf( ) -DisjointClasses( ) -DisjointClasses( ) -DisjointClasses( ) +DisjointClasses( ) # Class: (Mustelinae) @@ -145559,9 +145568,8 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:30458") AnnotationAssertion(rdfs:label "Strigiformes") -SubClassOf( ) -DisjointClasses( ) -DisjointClasses( ) +SubClassOf( ) +DisjointClasses( ) # Class: (Moschidae) @@ -145651,6 +145659,41 @@ SubClassOf( ) DisjointClasses( ) +# Class: (Columbimorphae) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "pigeons, sandgrouse & allies") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3073799") +AnnotationAssertion(rdfs:label "Columbimorphae") +SubClassOf( ) +DisjointClasses( ) + +# Class: (Telluraves) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "core landbirds") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3073808") +AnnotationAssertion(rdfs:label "Telluraves") +SubClassOf( ) + +# Class: (Australaves) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3073809") +AnnotationAssertion(rdfs:label "Australaves") +SubClassOf( ) + +# Class: (Neoaves) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3078114") +AnnotationAssertion(rdfs:label "Neoaves") +SubClassOf( ) + # Class: (Tetraodontiformes) AnnotationAssertion( "GC_ID:1") @@ -146475,6 +146518,7 @@ AnnotationAssertion( ) "Common warthog") AnnotationAssertion(Annotation( ) "warthog") AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Sus africanus") AnnotationAssertion( "NCBITaxon:41426") AnnotationAssertion(rdfs:label "Phacochoerus africanus") SubClassOf( ) @@ -146732,6 +146776,7 @@ SubClassOf( (Saccharomycetes) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:38895705") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Hemiascomycetes") AnnotationAssertion( "NCBITaxon:4891") @@ -146741,6 +146786,7 @@ SubClassOf( (Saccharomycetales) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:38895705") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Endomycetales") AnnotationAssertion(Annotation( ) "budding yeasts") @@ -146809,6 +146855,7 @@ AnnotationAssertion( ) "Candida robusta") AnnotationAssertion(Annotation( ) "Mycoderma cerevisiae") AnnotationAssertion(Annotation( ) "Saccharomyces capensis") +AnnotationAssertion(Annotation( ) "Saccharomyces cerevisiae (Desm.) Meyen ex E.C. Hansen, 1883") AnnotationAssertion(Annotation( ) "Saccharomyces diastaticus") AnnotationAssertion(Annotation( ) "Saccharomyces italicus") AnnotationAssertion(Annotation( ) "Saccharomyces oviformis") @@ -147719,6 +147766,7 @@ SubClassOf( (Coelacanthiformes) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "coelacanths") AnnotationAssertion(Annotation( ) "lobe-finned fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Osteichthyes") @@ -148406,7 +148454,7 @@ SubClassOf( (Anseriformes) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "ducks, geese and swans") +AnnotationAssertion(Annotation( ) "ducks, geese & swans") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:8826") AnnotationAssertion(rdfs:label "Anseriformes") @@ -148437,8 +148485,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:8929") AnnotationAssertion(rdfs:label "Columbiformes") -SubClassOf( ) -DisjointClasses( ) +SubClassOf( ) # Class: (Columbidae) @@ -148514,7 +148561,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9126") AnnotationAssertion(rdfs:label "Passeriformes") -SubClassOf( ) +SubClassOf( ) # Class: (Artiodactyla) @@ -151027,6 +151074,15 @@ AnnotationAssertion( "pyramidal family morphology") SubClassOf( ) +# Class: (unipolar neuron morphology) + +AnnotationAssertion(Annotation( "WikipediaVersioned:Unipolar_neuron&oldid=994458581") "A cell morphology that inheres in neurons with only one process, a neurite, that extends from the cell body. The neurite then branches to form dendritic and axonal processes.") +AnnotationAssertion( ) +AnnotationAssertion( "quality") +AnnotationAssertion( "PATO:0070025") +AnnotationAssertion(rdfs:label "unipolar neuron morphology") +SubClassOf( ) + # Class: (multipolar neuron morphology) AnnotationAssertion(Annotation( "WikipediaVersioned:Multipolar_neuron&oldid=1022942606") "A cell morphology that inheres in neurons which possess three or more neurites, usually a single axon and many dendrites and dendritic branches.") @@ -157058,9 +157114,7 @@ DisjointClasses(ObjectSomeValuesFrom( DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) @@ -157132,8 +157186,7 @@ DisjointClasses(ObjectSomeValuesFrom( DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) @@ -157152,6 +157205,11 @@ DisjointClasses(ObjectSomeValuesFrom( DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) @@ -157511,7 +157569,6 @@ DisjointClasses(ObjectSomeValuesFrom( DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectComplementOf())) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 43d807052..c28fc1a17 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -45,9 +45,6 @@ synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" synonymtypedef: SENSU "taxonomic disambiguation" synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns" default-namespace: uberon -idspace: EFO http://www.ebi.ac.uk/efo/EFO_ -idspace: NIF_Subcellular http://www.neurolex.org/wiki/ -idspace: NIFEXT http://uri.neuinfo.org/nif/nifstd/nifext_ treat-xrefs-as-equivalent: AEO treat-xrefs-as-equivalent: BILA treat-xrefs-as-equivalent: BSPO @@ -63170,8 +63167,8 @@ xref: UMLS:C1708253 {source="ncithesaurus:Granular_Layer_of_the_Cerebellum"} intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: in_deep_part_of UBERON:0002129 ! cerebellar cortex relationship: has_part CL:0000119 ! cerebellar Golgi cell -relationship: has_part CL:0000555 ! neuronal brush cell relationship: has_part CL:0001031 ! cerebellar granule cell +relationship: has_part CL:4023161 relationship: mutually_spatially_disjoint_with UBERON:0002979 {source="ABA"} ! Purkinje cell layer of cerebellar cortex [Term] @@ -72993,8 +72990,8 @@ id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] -synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "lower limb skin" EXACT [FMA:23102] +synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 4219d3c23..a28dc1c59 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-08-29") + +Annotation(owl:versionInfo "2024-12-17") Declaration(Class()) Declaration(Class())